Page generated on Fri Oct 15 12:01:49 2010

dme-mir-966



dme-mir-966

View dme-mir-966 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-966	136	4382		1	4127		251	2	1	14	4127	251

ATTCCATCGATTTCGCTCGGCTGTAACCTGATCCGCTGCTGTGGGTTGTGGGCTGTGTGGCTGTGGTATAGGTGCCGCCAGTTGATAACCCCCAGCGTGGGCACGGACCCACTGGTCGTCAACCGCTTCGCAACTC
..........................((((.(((((.((((.(((((((.(((((.(((((............)))))))))).))))))).))))))))))).))..............................-43.50
..............((..(((.((....((.(((((.((((.(((((((.(((((.(((((............)))))))))).))))))).)))))))))))..((((....))))....)).)))..)).....-51.70
Sense strand

	Size	Blast	Total	SRR023402 total RNA extracted from NLS-P19 cells	V098 dcr-2[L811fsX] ovary	V097 CS ovary	S29 male head #1	V081 embryo 2-6hr	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	V090 CS  male total RNA	S33 KC-48 #2	V067 S2-NP	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR023407 RNA bound by NLS-P19 protein	SRR014282 Ovary_rep1 wK_P	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	V009 CMEL1	SRR014280 Ovary_rep1 w1118_P	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	GSM424740 S2 pKF63 stably transfected	S32 s2+48 #2	V021 ML-DmD21 cell	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR029633 total small RNAs from hen1 homozygous flies	S16 KC -48 #1	SRR023400 total RNA extracted from P19 cells	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S30 s2-48 #2	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR031696_2152	GSM379057 Krimp Mutant	V008 S2-DRSC	SRR031693_4	V033 CMEW1 Cl.8+ cell	GSM379065 Zuc Heterozygote	V076 ML-DmBG3-C2	GSM424739 S2 parental	S31 s2+48 #1	V010 MLDmD20c5	GSM379051 Armi Mutant	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	V083 male, one day	SRR032096 AGO2 IP dcr2 knockdown	V088 r2d2[1] ovary total RNA	SRR032092 mock oxidized	S22 female head #1	S34 KC+48 #1	V011 Sg4	SRR029028 untreated (mock)	SRR032093 ago1 knockdown	V018 Kc167 cell	GSM280082 WT ovaries (18-29nt)	V028 CMEW1 Cl.8+ cell	SRR031701 Total small RNAs from r2d2 heterozygous flies	GSM379066 Zuc Mutant	GSM379058	S24 male body #2	S23 female body #2	GSM379054 Flam Heterozygote	GSM343287 Drosophila Toll 10b mutant embryos	SRR029033 lacZ knockdown	S10 2-6h #1 (8)	V024 kc167 cell	V082 embryo 14-24hr	GSM379052 Aub Heterozygote	V089 ago2[414] ovary total RNA	GSM379064 Vasa Mutant	SRR001338 IR non-beta-eliminated	SRR014273 Ovary_rep1_Har_P	S15 S2 -48 #1	GSM379062 Squ Mutant	V084 female, one day	S35 KC+48 #2	GSM379050 Armi Heterozygote	GSM379063 Vasa Heterozygote	SRR031692 Total small RNAs from Oregon R	SRR029031 loqs-ORF knockdown	S14 0-1hr #1 (A)	V066 r2d2[1], ovary, AGO1IP	V075 ML-DmBG1-C1	S28 0-2d pupae	SRR023197 RNA Library from S2 control cells	GSM379053 Aub Mutant	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	GSM239051 S2 cells, beta-eliminated	S9 0-1h #3 (7)	S2 female head	GSM180328 adult heads (female heads, male heads)	S13 6-10h #2 (11)	V020 S2R+ cell	SRR014277 Ovary_rep1 NA_P	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	V025 S2R+ cell	GSM379060 SpnE Heterozygote	SRR031699 Total small RNAs from dcr-2 homozygous flies	V063 CS,ovary,AGO1IP	SRR001349 heterozygous dcr-2_untreated	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	S19 2-4day pupae #1	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR032095 AGO1 IP dcr2 knockdown	GSM379061 Squ Heterozygote	S27 0-1d Pupae (w)	GSM280085 WT testes (18-24nt)	GSM379056 Krimp Heterozygote	SRR010954 Aub trans-heterozygotes, oxidized	V065 dcr-2[L811fsX], ovary, AGO1IP	S1 male head	GSM239050 fly heads, beta-eliminated	S21 disk #2	SRR001664 homozygous dcr-2_untreated	SRR023399 RNA bound by P19 protein	S12 6-10h #1 (10)	GSM379067 SpnE Mutant	S4 female body	SRR014275 Ovary_rep1 LK_P	SRR001343 dcr-2 non-beta-eliminated	V026 1182-4H cell	SRR029030 dcr-2 knockdown	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM280087 S2cell (AGO2IP)	V002 IR+	SRR029032 r2d2 knockdown	S8 S2-48,+48, KC-48, +48 mix	V001 IR-	GSM379059	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR001341 WT_males non-beta-eliminated	SRR010956 Piwi IP in Ago3 heterozygotes	SRR001345 ago2 non-beta-eliminated	SRR010960 wt, oxidized	S3 male body	S5 imaginal disc	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR010953 Aub heterozygotes, oxidized	S11 2-6h #2 (9)	GSM180333 late embryo (12-24)	GSM180335 imaginal discs	V019 GM2 cell	S7 12-24hr embryo	SRR001340 IR beta-eliminated	S18 3rd inster #2	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM379055 Flam Mutant	GSM280088 S2cell (AGO1IP)	S25 1st instar #1	OSS7 Drosophila OSS cell small RNA libraries, rep3	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	S20 2-4day pupae#2	GSM280086 WT ovaries (AGO2IP)	SRR001347 ago2 untreated	S26 1st instar #2	SRR032094 ago2 knockdown	GSM180332 mid embryo (6-10)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR001337 WT_females beta-eliminated	GSM180337 tissue culture cells (S2 only)	GSM280084 loqs-/- ovaries (18-29nt)	SRR031703 Total small RNAs from r2d2 homozygous flies	GSM467731 loq	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM467729 WT	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM246084 D. melanogaster adult male heads 454	SRR029029 dcr-1 knockdown	GSM180334 larvae: 1st instar and 3rd instars	SRR010959 Ago3 IP in heterozygotes	GSM180331 early embryo (2-6)	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	SRR001344 dcr-2 beta-eliminated	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR010955 Aub IP in Ago3 heterozygotes	GSM239052 S2 cells, non beta-eliminated	GSM467730 r2d2	GSM239041 fly heads, non beta-eliminated	GSM180329 adult bodies (female bodies, male bodies)	SRR001346 ago2 beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	S17 3rd inster #1	V064 ago2[414], ovary, AGO1IP
....................CTGTAACCTGATCCGCTGC.................................................................................................	19	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TGCTGTGGGTTGTGGGCTGTGTGG............................................................................	24	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CTGTGGGTTGTGGGCTGTGTG.............................................................................	21	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TGTGGGTTGTGGGCTGTGTGG............................................................................	21	1	1372	27	294	199	50	35	40	17	20	8	15	1	20	1	21	13	13	19	6	5	14	19	15	12	12	9	14	9	12	18	13	10	9	8	13	6	21	6	11	10	18	18	4	8	0	3	4	9	1	0	8	3	7	6	9	9	5	4	4	6	1	7	5	6	2	5	8	8	5	1	7	7	5	5	2	3	3	5	4	2	1	4	3	3	9	0	2	4	2	5	2	2	2	1	5	2	3	4	3	2	2	5	1	2	1	0	4	2	2	3	1	1	3	0	0	1	1	2	0	1	2	2	0	0	1	1	0	0	2	1	0	0	2	0	2	0	1	1	1	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TGTGGGTTGTGGGCTGTGTGGCTG.........................................................................	24	1	14	0	1	4	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TGTGGGTTGTGGGCTGTGTGGC...........................................................................	22	1	537	2	56	72	6	5	10	7	19	3	9	5	4	5	9	8	9	3	10	27	3	6	8	3	4	10	8	2	10	4	5	2	3	11	7	3	0	4	7	5	0	4	10	5	10	0	0	2	7	4	4	8	6	3	4	6	0	0	4	0	0	0	4	2	6	4	5	2	3	3	3	0	1	5	2	0	2	1	1	3	0	3	5	0	0	0	1	1	0	0	1	1	1	2	2	0	0	0	1	0	0	0	3	0	0	1	1	0	0	1	0	0	1	0	0	0	1	1	0	0	0	0	0	3	0	1	0	0	0	1	1	0	0	2	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TGTGGGTTGTGGGCTGTGTGGCTGT........................................................................	25	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TGTGGGTTGTGGGCTGTGT..............................................................................	19	1	205	11	18	14	13	19	0	26	3	0	0	0	0	0	2	2	3	0	2	0	1	1	1	12	2	1	5	1	1	0	0	2	3	4	0	8	0	0	3	0	0	3	1	1	0	1	0	0	0	0	0	1	0	4	0	0	1	2	0	1	0	1	2	0	1	0	1	2	0	0	0	1	0	0	1	2	1	0	2	1	0	0	1	2	0	0	0	0	2	0	0	0	0	1	0	0	0	2	1	1	1	0	1	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TGTGGGTTGTGGGCTGTGTG.............................................................................	20	1	1306	634	90	76	0	22	20	12	13	0	6	49	31	49	10	6	13	14	14	0	0	4	8	2	2	12	4	1	5	1	13	2	8	3	8	5	9	1	5	7	0	2	0	7	15	5	0	2	2	6	2	3	3	2	1	1	1	2	4	11	0	0	2	2	2	3	1	2	5	0	3	1	0	0	4	4	6	2	0	2	0	1	1	4	0	0	2	0	0	1	2	4	1	2	0	0	2	0	1	0	1	0	0	0	0	3	0	0	0	0	0	1	0	0	3	1	1	0	1	0	0	1	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TGTGGGTTGTGGGCTGTGTGGCT..........................................................................	23	1	535	0	38	40	20	7	12	4	14	29	18	2	0	2	9	11	6	9	10	13	8	2	7	3	11	4	3	9	4	3	2	10	5	3	2	0	0	3	2	4	0	0	1	4	0	12	14	9	9	6	2	4	2	2	4	2	5	4	4	0	14	5	1	5	5	1	1	2	2	3	2	5	6	2	2	3	1	0	4	3	5	3	0	0	0	0	1	2	0	2	2	1	3	1	0	4	0	0	0	0	2	1	1	1	0	1	0	1	2	1	3	2	1	2	0	1	0	0	1	3	2	0	0	0	2	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TGTGGGTTGTGGGCTGTG...............................................................................	18	1	101	4	6	8	0	5	0	9	3	0	1	0	4	0	0	2	2	0	4	0	0	3	1	6	0	1	3	0	2	0	1	1	2	1	0	6	0	0	1	1	0	0	2	0	0	0	0	0	0	0	0	1	1	3	0	0	1	0	1	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	2	1	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GTGGGTTGTGGGCTGTGT..............................................................................	18	1	2	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GTGGGTTGTGGGCTGTGTG.............................................................................	19	1	9	0	5	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GTGGGTTGTGGGCTGTGTGGC...........................................................................	21	1	24	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	5	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GTGGGTTGTGGGCTGTGTGGCT..........................................................................	22	1	3	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GTGGGTTGTGGGCTGTGTGGCTG.........................................................................	23	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GTGGGTTGTGGGCTGTGTGG............................................................................	20	1	8	0	0	1	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................TGGGTTGTGGGCTGTGTGGCTG.........................................................................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................TGGGTTGTGGGCTGTGTG.............................................................................	18	1	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................TGGGTTGTGGGCTGTGTGGC...........................................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................GGGTTGTGGGCTGTGTGGC...........................................................................	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................GTGGTATAGGTGCCGCCAGTTGATAACC..............................................	28	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................GCCGCCAGTTGATAACCCCCAGC........................................	23	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................GCCGCCAGTTGATAACCCC............................................	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................CCGCCAGTTGATAACCCCCA..........................................	20	1	20	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	3	0	0	0	1	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................CCGCCAGTTGATAACCCCCAG.........................................	21	1	59	1	0	1	0	0	0	0	0	8	1	0	0	0	0	0	0	0	0	0	2	0	0	0	4	0	0	5	0	0	0	0	0	1	0	0	0	5	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	3	0	0	0	0	0	0	0	1	0	0	0	0	7	2	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................CCGCCAGTTGATAACCCC............................................	18	1	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................CCGCCAGTTGATAACCCCC...........................................	19	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................CCGCCAGTTGATAACCCCCAGC........................................	22	1	160	0	6	2	7	1	0	0	0	20	2	2	0	2	2	5	1	2	0	0	9	3	0	0	2	1	0	9	0	4	1	4	1	0	0	1	0	9	0	2	0	0	0	0	0	1	3	0	0	1	4	0	1	0	2	0	3	4	1	0	2	3	2	0	0	0	0	0	0	5	0	0	0	1	1	0	0	3	1	0	3	0	0	0	0	0	1	0	4	0	0	0	0	0	0	1	1	1	0	1	0	0	0	0	2	0	0	2	0	0	0	1	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................GCCAGTTGATAACCCCCAGCGT......................................	22	1	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................CCCACTGGTCGTCAACCGCTTCGCAAC..	27	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	SRR023402 total RNA extracted from NLS-P19 cells	V098 dcr-2[L811fsX] ovary	V097 CS ovary	S29 male head #1	V081 embryo 2-6hr	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	V090 CS  male total RNA	S33 KC-48 #2	V067 S2-NP	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR023407 RNA bound by NLS-P19 protein	SRR014282 Ovary_rep1 wK_P	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	V009 CMEL1	SRR014280 Ovary_rep1 w1118_P	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	GSM424740 S2 pKF63 stably transfected	S32 s2+48 #2	V021 ML-DmD21 cell	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR029633 total small RNAs from hen1 homozygous flies	S16 KC -48 #1	SRR023400 total RNA extracted from P19 cells	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S30 s2-48 #2	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR031696_2152	GSM379057 Krimp Mutant	V008 S2-DRSC	SRR031693_4	V033 CMEW1 Cl.8+ cell	GSM379065 Zuc Heterozygote	V076 ML-DmBG3-C2	GSM424739 S2 parental	S31 s2+48 #1	V010 MLDmD20c5	GSM379051 Armi Mutant	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	V083 male, one day	SRR032096 AGO2 IP dcr2 knockdown	V088 r2d2[1] ovary total RNA	SRR032092 mock oxidized	S22 female head #1	S34 KC+48 #1	V011 Sg4	SRR029028 untreated (mock)	SRR032093 ago1 knockdown	V018 Kc167 cell	GSM280082 WT ovaries (18-29nt)	V028 CMEW1 Cl.8+ cell	SRR031701 Total small RNAs from r2d2 heterozygous flies	GSM379066 Zuc Mutant	GSM379058	S24 male body #2	S23 female body #2	GSM379054 Flam Heterozygote	GSM343287 Drosophila Toll 10b mutant embryos	SRR029033 lacZ knockdown	S10 2-6h #1 (8)	V024 kc167 cell	V082 embryo 14-24hr	GSM379052 Aub Heterozygote	V089 ago2[414] ovary total RNA	GSM379064 Vasa Mutant	SRR001338 IR non-beta-eliminated	SRR014273 Ovary_rep1_Har_P	S15 S2 -48 #1	GSM379062 Squ Mutant	V084 female, one day	S35 KC+48 #2	GSM379050 Armi Heterozygote	GSM379063 Vasa Heterozygote	SRR031692 Total small RNAs from Oregon R	SRR029031 loqs-ORF knockdown	S14 0-1hr #1 (A)	V066 r2d2[1], ovary, AGO1IP	V075 ML-DmBG1-C1	S28 0-2d pupae	SRR023197 RNA Library from S2 control cells	GSM379053 Aub Mutant	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	GSM239051 S2 cells, beta-eliminated	S9 0-1h #3 (7)	S2 female head	GSM180328 adult heads (female heads, male heads)	S13 6-10h #2 (11)	V020 S2R+ cell	SRR014277 Ovary_rep1 NA_P	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	V025 S2R+ cell	GSM379060 SpnE Heterozygote	SRR031699 Total small RNAs from dcr-2 homozygous flies	V063 CS,ovary,AGO1IP	SRR001349 heterozygous dcr-2_untreated	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	S19 2-4day pupae #1	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR032095 AGO1 IP dcr2 knockdown	GSM379061 Squ Heterozygote	S27 0-1d Pupae (w)	GSM280085 WT testes (18-24nt)	GSM379056 Krimp Heterozygote	SRR010954 Aub trans-heterozygotes, oxidized	V065 dcr-2[L811fsX], ovary, AGO1IP	S1 male head	GSM239050 fly heads, beta-eliminated	S21 disk #2	SRR001664 homozygous dcr-2_untreated	SRR023399 RNA bound by P19 protein	S12 6-10h #1 (10)	GSM379067 SpnE Mutant	S4 female body	SRR014275 Ovary_rep1 LK_P	SRR001343 dcr-2 non-beta-eliminated	V026 1182-4H cell	SRR029030 dcr-2 knockdown	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM280087 S2cell (AGO2IP)	V002 IR+	SRR029032 r2d2 knockdown	S8 S2-48,+48, KC-48, +48 mix	V001 IR-	GSM379059	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR001341 WT_males non-beta-eliminated	SRR010956 Piwi IP in Ago3 heterozygotes	SRR001345 ago2 non-beta-eliminated	SRR010960 wt, oxidized	S3 male body	S5 imaginal disc	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR010953 Aub heterozygotes, oxidized	S11 2-6h #2 (9)	GSM180333 late embryo (12-24)	GSM180335 imaginal discs	V019 GM2 cell	S7 12-24hr embryo	SRR001340 IR beta-eliminated	S18 3rd inster #2	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM379055 Flam Mutant	GSM280088 S2cell (AGO1IP)	S25 1st instar #1	OSS7 Drosophila OSS cell small RNA libraries, rep3	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	S20 2-4day pupae#2	GSM280086 WT ovaries (AGO2IP)	SRR001347 ago2 untreated	S26 1st instar #2	SRR032094 ago2 knockdown	GSM180332 mid embryo (6-10)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010952 Ago3 trans-heterozygotes, oxidized	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR001337 WT_females beta-eliminated	GSM180337 tissue culture cells (S2 only)	GSM280084 loqs-/- ovaries (18-29nt)	SRR031703 Total small RNAs from r2d2 homozygous flies	GSM467731 loq	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM467729 WT	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM246084 D. melanogaster adult male heads 454	SRR029029 dcr-1 knockdown	GSM180334 larvae: 1st instar and 3rd instars	SRR010959 Ago3 IP in heterozygotes	GSM180331 early embryo (2-6)	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	SRR001344 dcr-2 beta-eliminated	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR010955 Aub IP in Ago3 heterozygotes	GSM239052 S2 cells, non beta-eliminated	GSM467730 r2d2	GSM239041 fly heads, non beta-eliminated	GSM180329 adult bodies (female bodies, male bodies)	SRR001346 ago2 beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	S17 3rd inster #1	V064 ago2[414], ovary, AGO1IP