Page generated on Fri Oct 15 12:01:34 2010

dme-mir-970



dme-mir-970

View dme-mir-970 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-970	144	165445		21	4947	251	160220	1	5	20	160220	4947

ATACGAGTTGAAAGTGCCCATAATCGAAAGGCATCTGTTGCAGCTAGCGGGTGTTTTATTTGGTAGCTGTAATGATTTGAATCTATCATAAGACACACGCGGCTATAACCGTTGTCTAAGAGCTTCAAAATCGATAATAACAAA
............................(((((.(.((((.((((.(((.((((((((..((((((...(((....)))...)))))))))))))).))))))).)))).).)))))...........................-31.30
......(((((..(((((...........)))))..((((((((((.((((((...)))))).))))))))))..((((((.((....(.(((((...((((......))))))))).).)).)))))).))))).........-36.70
Sense strand

	Size	Blast	Total	V098 dcr-2[L811fsX] ovary	S29 male head #1	SRR031696_2152	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR029633 total small RNAs from hen1 homozygous flies	V064 ago2[414], ovary, AGO1IP	V097 CS ovary	SRR031703 Total small RNAs from r2d2 homozygous flies	V066 r2d2[1], ovary, AGO1IP	V063 CS,ovary,AGO1IP	SRR032095 AGO1 IP dcr2 knockdown	GSM280088 S2cell (AGO1IP)	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR031692 Total small RNAs from Oregon R	S33 KC-48 #2	SRR001338 IR non-beta-eliminated	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR031697 Total small RNAs from dcr-2 heterozygous flies	V090 CS  male total RNA	S32 s2+48 #2	SRR029028 untreated (mock)	S22 female head #1	V088 r2d2[1] ovary total RNA	V081 embryo 2-6hr	SRR029030 dcr-2 knockdown	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	S31 s2+48 #1	OSS2 Drosophila OSS cell small RNA libraries, rep1	V067 S2-NP	SRR014275 Ovary_rep1 LK_P	V089 ago2[414] ovary total RNA	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V008 S2-DRSC	SRR001664 homozygous dcr-2_untreated	OSS7 Drosophila OSS cell small RNA libraries, rep3	SRR001347 ago2 untreated	SRR001349 heterozygous dcr-2_untreated	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	S30 s2-48 #2	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V083 male, one day	S16 KC -48 #1	S28 0-2d pupae	S15 S2 -48 #1	SRR014280 Ovary_rep1 w1118_P	S2 female head	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	OSS8 Drosophila OSS cell small RNA libraries, rep4	V082 embryo 14-24hr	SRR014277 Ovary_rep1 NA_P	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	V026 1182-4H cell	S35 KC+48 #2	SRR029033 lacZ knockdown	S19 2-4day pupae #1	SRR001345 ago2 non-beta-eliminated	S9 0-1h #3 (7)	SRR029031 loqs-ORF knockdown	S24 male body #2	GSM379064 Vasa Mutant	SRR014273 Ovary_rep1_Har_P	V009 CMEL1	GSM379065 Zuc Heterozygote	V084 female, one day	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	S34 KC+48 #1	V033 CMEW1 Cl.8+ cell	V025 S2R+ cell	V018 Kc167 cell	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR032094 ago2 knockdown	GSM379052 Aub Heterozygote	S27 0-1d Pupae (w)	V020 S2R+ cell	GSM379060 SpnE Heterozygote	V002 IR+	SRR029032 r2d2 knockdown	S14 0-1hr #1 (A)	GSM467729 WT	V001 IR-	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	V024 kc167 cell	SRR014282 Ovary_rep1 wK_P	S23 female body #2	GSM379050 Armi Heterozygote	GSM379057 Krimp Mutant	GSM379063 Vasa Heterozygote	GSM379066 Zuc Mutant	SRR029029 dcr-1 knockdown	S1 male head	S8 S2-48,+48, KC-48, +48 mix	GSM424739 S2 parental	V021 ML-DmD21 cell	GSM379056 Krimp Heterozygote	GSM467730 r2d2	GSM379054 Flam Heterozygote	SRR032093 ago1 knockdown	V076 ML-DmBG3-C2	GSM379062 Squ Mutant	V019 GM2 cell	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	GSM379058	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM379051 Armi Mutant	S10 2-6h #1 (8)	GSM379053 Aub Mutant	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	V010 MLDmD20c5	V028 CMEW1 Cl.8+ cell	GSM180328 adult heads (female heads, male heads)	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	SRR001344 dcr-2 beta-eliminated	V011 Sg4	SRR001343 dcr-2 non-beta-eliminated	S21 disk #2	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	GSM379061 Squ Heterozygote	SRR031693_4	GSM424740 S2 pKF63 stably transfected	S13 6-10h #2 (11)	S5 imaginal disc	S7 12-24hr embryo	S12 6-10h #1 (10)	S17 3rd inster #1	SRR032092 mock oxidized	S3 male body	GSM379059	S4 female body	GSM343287 Drosophila Toll 10b mutant embryos	GSM379067 SpnE Mutant	GSM280085 WT testes (18-24nt)	GSM280087 S2cell (AGO2IP)	SRR032096 AGO2 IP dcr2 knockdown	S20 2-4day pupae#2	GSM239041 fly heads, non beta-eliminated	S11 2-6h #2 (9)	S18 3rd inster #2	GSM280082 WT ovaries (18-29nt)	V075 ML-DmBG1-C1	GSM180337 tissue culture cells (S2 only)	GSM424741 S2 pKF63 transiently transfected	SRR001337 WT_females beta-eliminated	GSM180333 late embryo (12-24)	GSM467731 loq	S25 1st instar #1	GSM379055 Flam Mutant	GSM180335 imaginal discs	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR001340 IR beta-eliminated	GSM180330 very early embryo (0-1)	SRR010956 Piwi IP in Ago3 heterozygotes	S26 1st instar #2	GSM280084 loqs-/- ovaries (18-29nt)	GSM180334 larvae: 1st instar and 3rd instars	GSM180329 adult bodies (female bodies, male bodies)	GSM239052 S2 cells, non beta-eliminated	GSM239050 fly heads, beta-eliminated	GSM180331 early embryo (2-6)	SRR001346 ago2 beta-eliminated	GSM180332 mid embryo (6-10)	SRR023197 RNA Library from S2 control cells	SRR010959 Ago3 IP in heterozygotes	GSM239051 S2 cells, beta-eliminated	GSM246084 D. melanogaster adult male heads 454	SRR023400 total RNA extracted from P19 cells	SRR010954 Aub trans-heterozygotes, oxidized	SRR001342 WT_males beta-eliminated	SRR010955 Aub IP in Ago3 heterozygotes	SRR010953 Aub heterozygotes, oxidized	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR023399 RNA bound by P19 protein	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR023402 total RNA extracted from NLS-P19 cells	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM280086 WT ovaries (AGO2IP)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR023407 RNA bound by NLS-P19 protein	SRR010960 wt, oxidized	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	SRR010951 Ago3 heterozygotes, oxidized
...............GCCCATAATCGAAAGGCATCTGTTGC.......................................................................................................	26	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ATCGAAAGGCATCTGTTGC.......................................................................................................	19	1	20	3	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	2	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................CAGCTAGCGGGTGTTTTATTTGGTA...............................................................................	25	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................AGCTAGCGGGTGTTTTATT....................................................................................	19	1	13	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................AGCTAGCGGGTGTTTTAT.....................................................................................	18	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................AGCTAGCGGGTGTTTTATTTGG.................................................................................	22	1	293	28	19	4	2	5	1	27	3	0	4	0	0	2	3	6	0	1	3	4	9	3	2	2	11	2	0	1	9	0	7	0	3	3	6	0	0	0	1	0	1	0	4	3	0	2	0	1	0	0	16	0	0	1	2	0	0	2	4	5	0	0	0	4	1	4	0	1	10	0	1	2	7	1	1	1	0	0	0	2	0	0	0	0	1	0	0	0	0	0	1	0	2	0	0	1	0	0	0	0	3	1	2	0	0	1	0	0	0	0	0	2	4	9	1	3	0	0	0	1	0	0	0	0	0	0	1	0	0	1	0	1	0	1	5	0	0	0	0	1	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................AGCTAGCGGGTGTTTTATTTG..................................................................................	21	1	83	4	15	1	0	2	0	1	1	2	1	1	0	2	1	7	1	0	1	0	1	0	1	2	4	0	0	0	0	0	2	1	0	1	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	3	0	0	0	2	0	1	0	0	1	3	0	0	0	0	0	0	0	3	0	0	0	2	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	3	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................AGCTAGCGGGTGTTTTATTTGGTA...............................................................................	24	1	3605	591	213	2	7	33	1	414	53	12	9	5	0	35	32	28	4	20	17	75	54	19	105	56	19	56	0	28	30	0	83	23	97	26	30	2	0	2	0	31	12	38	83	21	51	10	37	31	0	1	158	18	0	23	17	3	31	32	9	20	27	6	8	73	11	54	0	4	52	13	34	14	1	0	0	24	15	2	9	9	3	1	29	0	11	14	13	0	5	7	4	0	5	2	0	24	1	1	2	15	29	2	13	12	12	0	4	0	5	1	5	1	42	62	10	4	1	5	19	5	4	0	5	0	0	4	1	4	10	2	0	0	1	2	0	3	0	0	0	2	0	1	2	0	19	0	0	1	4	1	0	1	0	2	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................AGCTAGCGGGTGTTTTATTTGGTAG..............................................................................	25	1	111	16	16	0	0	0	0	10	2	1	0	0	0	0	1	0	0	1	0	2	1	0	5	1	5	0	2	1	0	0	1	0	8	0	3	0	0	0	0	0	0	6	4	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	3	0	0	0	0	0	0	0	2	0	0	0	2	1	1	0	0	2	2	0	0	0	0	0	1	0	0	1	0	1	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................AGCTAGCGGGTGTTTTATTTGGTAGC.............................................................................	26	1	9	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................AGCTAGCGGGTGTTTTATTTGGT................................................................................	23	1	672	53	13	2	4	1	0	38	9	0	4	1	2	5	3	18	1	3	1	11	6	8	24	7	9	49	0	6	12	0	16	3	17	2	9	1	2	0	0	3	7	3	10	4	4	2	4	3	0	1	36	4	0	2	2	5	2	3	0	15	5	4	1	16	8	7	0	0	13	4	2	7	10	8	2	2	2	0	0	12	0	0	5	0	5	1	2	0	3	4	1	0	0	0	0	3	4	0	0	5	8	1	2	5	5	0	0	0	0	0	0	0	6	31	1	4	0	2	5	0	0	0	0	1	1	0	3	1	0	1	0	0	0	0	0	1	0	0	0	0	1	0	0	0	4	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......................................................................................CATAAGACACACGCGGCTATAA....................................	22	1	15	0	7	0	0	1	0	0	1	0	0	0	0	1	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................CATAAGACACACGCGGCT........................................	18	1	12	1	0	0	0	1	0	0	2	0	1	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................CATAAGACACACGCGGCTATA.....................................	21	1	15	1	0	1	0	2	0	0	2	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................CATAAGACACACGCGGCTAT......................................	20	1	623	5	34	51	7	45	8	8	64	5	16	11	4	29	26	7	11	23	23	0	11	1	10	2	1	7	8	9	8	3	6	3	0	2	0	6	4	6	3	1	13	0	2	6	4	6	0	7	3	8	2	5	3	0	1	0	1	2	7	1	1	2	1	0	0	1	0	3	0	0	1	1	2	8	1	0	0	1	0	0	1	10	0	1	1	1	2	0	1	1	2	0	4	0	0	1	1	9	0	1	1	0	0	2	2	2	1	0	0	0	0	2	1	0	1	1	1	1	0	1	1	0	0	1	0	0	0	2	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................ATAAGACACACGCGGCTATAAC...................................	22	1	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................ATAAGACACACGCGGCTATAA....................................	21	1	13	0	0	3	1	1	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................ATAAGACACACGCGGCTAT......................................	19	1	1101	66	2	53	43	31	28	11	21	31	36	15	44	14	12	2	12	19	23	16	0	22	1	8	29	20	22	15	1	13	10	8	9	16	8	1	25	0	0	16	0	12	16	0	0	1	26	2	13	12	9	16	16	10	0	4	1	6	0	8	0	13	10	0	14	12	5	1	2	1	6	9	0	0	13	0	5	15	1	0	0	0	4	7	5	9	0	6	4	11	4	3	0	0	0	1	6	0	9	0	2	6	2	2	2	0	4	8	6	0	6	0	0	0	0	1	0	2	4	2	0	4	5	1	0	0	0	0	0	1	0	0	3	0	1	3	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................ATAAGACACACGCGGCTATA.....................................	20	1	20	2	0	1	0	0	1	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................ATAAGACACACGCGGCTA.......................................	18	2	45	3	0	0	1	0	2	1	2	0	0	1	1	0	0	0	1	2	2	0	0	0	0	1	0	0	1	2	0	1	1	1	0	0	1	0	0	0	0	1	0	0	0	0	0	0	2	0	1	2	0	1	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	1	0	0	0	2	1	1	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................TAAGACACACGCGGCTATA.....................................	19	1	3	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................TAAGACACACGCGGCTAT......................................	18	1	34	1	0	3	0	0	1	1	0	0	3	3	0	0	1	0	0	2	1	0	0	0	1	0	2	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................AACCGTTGTCTAAGAGCT....................	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	V098 dcr-2[L811fsX] ovary	S29 male head #1	SRR031696_2152	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR029633 total small RNAs from hen1 homozygous flies	V064 ago2[414], ovary, AGO1IP	V097 CS ovary	SRR031703 Total small RNAs from r2d2 homozygous flies	V066 r2d2[1], ovary, AGO1IP	V063 CS,ovary,AGO1IP	SRR032095 AGO1 IP dcr2 knockdown	GSM280088 S2cell (AGO1IP)	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR031692 Total small RNAs from Oregon R	S33 KC-48 #2	SRR001338 IR non-beta-eliminated	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR031697 Total small RNAs from dcr-2 heterozygous flies	V090 CS  male total RNA	S32 s2+48 #2	SRR029028 untreated (mock)	S22 female head #1	V088 r2d2[1] ovary total RNA	V081 embryo 2-6hr	SRR029030 dcr-2 knockdown	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	S31 s2+48 #1	OSS2 Drosophila OSS cell small RNA libraries, rep1	V067 S2-NP	SRR014275 Ovary_rep1 LK_P	V089 ago2[414] ovary total RNA	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V008 S2-DRSC	SRR001664 homozygous dcr-2_untreated	OSS7 Drosophila OSS cell small RNA libraries, rep3	SRR001347 ago2 untreated	SRR001349 heterozygous dcr-2_untreated	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	S30 s2-48 #2	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V083 male, one day	S16 KC -48 #1	S28 0-2d pupae	S15 S2 -48 #1	SRR014280 Ovary_rep1 w1118_P	S2 female head	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	OSS8 Drosophila OSS cell small RNA libraries, rep4	V082 embryo 14-24hr	SRR014277 Ovary_rep1 NA_P	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	V026 1182-4H cell	S35 KC+48 #2	SRR029033 lacZ knockdown	S19 2-4day pupae #1	SRR001345 ago2 non-beta-eliminated	S9 0-1h #3 (7)	SRR029031 loqs-ORF knockdown	S24 male body #2	GSM379064 Vasa Mutant	SRR014273 Ovary_rep1_Har_P	V009 CMEL1	GSM379065 Zuc Heterozygote	V084 female, one day	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	S34 KC+48 #1	V033 CMEW1 Cl.8+ cell	V025 S2R+ cell	V018 Kc167 cell	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR032094 ago2 knockdown	GSM379052 Aub Heterozygote	S27 0-1d Pupae (w)	V020 S2R+ cell	GSM379060 SpnE Heterozygote	V002 IR+	SRR029032 r2d2 knockdown	S14 0-1hr #1 (A)	GSM467729 WT	V001 IR-	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	V024 kc167 cell	SRR014282 Ovary_rep1 wK_P	S23 female body #2	GSM379050 Armi Heterozygote	GSM379057 Krimp Mutant	GSM379063 Vasa Heterozygote	GSM379066 Zuc Mutant	SRR029029 dcr-1 knockdown	S1 male head	S8 S2-48,+48, KC-48, +48 mix	GSM424739 S2 parental	V021 ML-DmD21 cell	GSM379056 Krimp Heterozygote	GSM467730 r2d2	GSM379054 Flam Heterozygote	SRR032093 ago1 knockdown	V076 ML-DmBG3-C2	GSM379062 Squ Mutant	V019 GM2 cell	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	GSM379058	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM379051 Armi Mutant	S10 2-6h #1 (8)	GSM379053 Aub Mutant	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	V010 MLDmD20c5	V028 CMEW1 Cl.8+ cell	GSM180328 adult heads (female heads, male heads)	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	SRR001344 dcr-2 beta-eliminated	V011 Sg4	SRR001343 dcr-2 non-beta-eliminated	S21 disk #2	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	GSM379061 Squ Heterozygote	SRR031693_4	GSM424740 S2 pKF63 stably transfected	S13 6-10h #2 (11)	S5 imaginal disc	S7 12-24hr embryo	S12 6-10h #1 (10)	S17 3rd inster #1	SRR032092 mock oxidized	S3 male body	GSM379059	S4 female body	GSM343287 Drosophila Toll 10b mutant embryos	GSM379067 SpnE Mutant	GSM280085 WT testes (18-24nt)	GSM280087 S2cell (AGO2IP)	SRR032096 AGO2 IP dcr2 knockdown	S20 2-4day pupae#2	GSM239041 fly heads, non beta-eliminated	S11 2-6h #2 (9)	S18 3rd inster #2	GSM280082 WT ovaries (18-29nt)	V075 ML-DmBG1-C1	GSM180337 tissue culture cells (S2 only)	GSM424741 S2 pKF63 transiently transfected	SRR001337 WT_females beta-eliminated	GSM180333 late embryo (12-24)	GSM467731 loq	S25 1st instar #1	GSM379055 Flam Mutant	GSM180335 imaginal discs	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR001340 IR beta-eliminated	GSM180330 very early embryo (0-1)	SRR010956 Piwi IP in Ago3 heterozygotes	S26 1st instar #2	GSM280084 loqs-/- ovaries (18-29nt)	GSM180334 larvae: 1st instar and 3rd instars	GSM180329 adult bodies (female bodies, male bodies)	GSM239052 S2 cells, non beta-eliminated	GSM239050 fly heads, beta-eliminated	GSM180331 early embryo (2-6)	SRR001346 ago2 beta-eliminated	GSM180332 mid embryo (6-10)	SRR023197 RNA Library from S2 control cells	SRR010959 Ago3 IP in heterozygotes	GSM239051 S2 cells, beta-eliminated	GSM246084 D. melanogaster adult male heads 454	SRR023400 total RNA extracted from P19 cells	SRR010954 Aub trans-heterozygotes, oxidized	SRR001342 WT_males beta-eliminated	SRR010955 Aub IP in Ago3 heterozygotes	SRR010953 Aub heterozygotes, oxidized	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR023399 RNA bound by P19 protein	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR023402 total RNA extracted from NLS-P19 cells	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM280086 WT ovaries (AGO2IP)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR023407 RNA bound by NLS-P19 protein	SRR010960 wt, oxidized	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	SRR010951 Ago3 heterozygotes, oxidized