Page generated on Fri Oct 15 12:01:22 2010

dme-mir-980



dme-mir-980

View dme-mir-980 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-980	147	1108326	2	2	4819	39	1103461		7	21	1103461	4819

AAATTTCCCGCGTGTGAAATACGAAGTTGATTGTATGTCAGTTTTTCATTTGGCCTGGCTAGCTTACTCCTTTTTAAATATTGCTAGCTGCCTTGTGAAGGGCTTACGTGTAATTGCAGTTCGACTCCCGAATAATAAATTTTTCGA
............................((((((((((.((((((((((..(((..(((((((...................))))))))))..)))))))))).))))))))))................................-33.01
..(((((........))))).(((((..((((((((((.((((((((((..(((..(((((((...................))))))))))..)))))))))).))))))))))...(((((.....)))))........))))).-40.61
Sense strand

	Size	Blast	Total	V009 CMEL1	V010 MLDmD20c5	SRR032095 AGO1 IP dcr2 knockdown	V026 1182-4H cell	V024 kc167 cell	GSM424739 S2 parental	V019 GM2 cell	V018 Kc167 cell	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR029031 loqs-ORF knockdown	V008 S2-DRSC	V033 CMEW1 Cl.8+ cell	V067 S2-NP	GSM280088 S2cell (AGO1IP)	V020 S2R+ cell	V025 S2R+ cell	V021 ML-DmD21 cell	GSM424740 S2 pKF63 stably transfected	SRR029028 untreated (mock)	V090 CS  male total RNA	V075 ML-DmBG1-C1	SRR029030 dcr-2 knockdown	V082 embryo 14-24hr	SRR029033 lacZ knockdown	V076 ML-DmBG3-C2	SRR029032 r2d2 knockdown	V011 Sg4	V084 female, one day	V083 male, one day	V028 CMEW1 Cl.8+ cell	SRR031696_2152	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR032096 AGO2 IP dcr2 knockdown	SRR029029 dcr-1 knockdown	GSM424741 S2 pKF63 transiently transfected	V002 IR+	SRR032094 ago2 knockdown	V001 IR-	V098 dcr-2[L811fsX] ovary	SRR032093 ago1 knockdown	S30 s2-48 #2	V097 CS ovary	SRR029633 total small RNAs from hen1 homozygous flies	S15 S2 -48 #1	GSM379059	GSM379065 Zuc Heterozygote	SRR014273 Ovary_rep1_Har_P	S33 KC-48 #2	V089 ago2[414] ovary total RNA	GSM280087 S2cell (AGO2IP)	V081 embryo 2-6hr	V088 r2d2[1] ovary total RNA	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR031692 Total small RNAs from Oregon R	GSM379057 Krimp Mutant	S32 s2+48 #2	SRR031701 Total small RNAs from r2d2 heterozygous flies	S13 6-10h #2 (11)	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR031697 Total small RNAs from dcr-2 heterozygous flies	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR014277 Ovary_rep1 NA_P	SRR031703 Total small RNAs from r2d2 homozygous flies	V064 ago2[414], ovary, AGO1IP	S31 s2+48 #1	SRR001338 IR non-beta-eliminated	SRR031699 Total small RNAs from dcr-2 homozygous flies	GSM379056 Krimp Heterozygote	V066 r2d2[1], ovary, AGO1IP	SRR001349 heterozygous dcr-2_untreated	SRR001347 ago2 untreated	GSM379053 Aub Mutant	GSM379055 Flam Mutant	GSM379051 Armi Mutant	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	S16 KC -48 #1	V063 CS,ovary,AGO1IP	SRR001664 homozygous dcr-2_untreated	GSM239052 S2 cells, non beta-eliminated	SRR014275 Ovary_rep1 LK_P	S12 6-10h #1 (10)	S24 male body #2	GSM379050 Armi Heterozygote	S19 2-4day pupae #1	S29 male head #1	GSM379064 Vasa Mutant	GSM379063 Vasa Heterozygote	GSM379060 SpnE Heterozygote	GSM379054 Flam Heterozygote	S28 0-2d pupae	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	S22 female head #1	SRR032092 mock oxidized	SRR014280 Ovary_rep1 w1118_P	SRR023400 total RNA extracted from P19 cells	GSM379058	S8 S2-48,+48, KC-48, +48 mix	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM379066 Zuc Mutant	GSM280085 WT testes (18-24nt)	GSM280084 loqs-/- ovaries (18-29nt)	S7 12-24hr embryo	GSM379052 Aub Heterozygote	S27 0-1d Pupae (w)	GSM379061 Squ Heterozygote	GSM379062 Squ Mutant	S35 KC+48 #2	S23 female body #2	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR023197 RNA Library from S2 control cells	GSM343287 Drosophila Toll 10b mutant embryos	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR031693_4	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379067 SpnE Mutant	S34 KC+48 #1	S2 female head	S17 3rd inster #1	SRR001345 ago2 non-beta-eliminated	S25 1st instar #1	SRR014282 Ovary_rep1 wK_P	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	GSM280082 WT ovaries (18-29nt)	SRR023399 RNA bound by P19 protein	SRR023402 total RNA extracted from NLS-P19 cells	S10 2-6h #1 (8)	S9 0-1h #3 (7)	S26 1st instar #2	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	GSM180333 late embryo (12-24)	S4 female body	GSM180332 mid embryo (6-10)	SRR001341 WT_males non-beta-eliminated	GSM180328 adult heads (female heads, male heads)	S3 male body	SRR001339 WT_females non-beta-eliminated	S14 0-1hr #1 (A)	SRR001344 dcr-2 beta-eliminated	SRR001348 ago2 oxidized	S1 male head	SRR001343 dcr-2 non-beta-eliminated	GSM467730 r2d2	GSM239041 fly heads, non beta-eliminated	GSM467729 WT	S5 imaginal disc	SRR001337 WT_females beta-eliminated	S18 3rd inster #2	S20 2-4day pupae#2	GSM239051 S2 cells, beta-eliminated	S21 disk #2	GSM467731 loq	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR010955 Aub IP in Ago3 heterozygotes	GSM180329 adult bodies (female bodies, male bodies)	SRR010954 Aub trans-heterozygotes, oxidized	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR001340 IR beta-eliminated	GSM180334 larvae: 1st instar and 3rd instars	GSM180331 early embryo (2-6)	S11 2-6h #2 (9)	OSS8 Drosophila OSS cell small RNA libraries, rep4	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM180330 very early embryo (0-1)	GSM180335 imaginal discs	SRR010956 Piwi IP in Ago3 heterozygotes	SRR001342 WT_males beta-eliminated	GSM280086 WT ovaries (AGO2IP)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR010960 wt, oxidized	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	SRR010959 Ago3 IP in heterozygotes	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR010958 Piwi IP in Ago3 trans-heterozygotes	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR001346 ago2 beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	SRR010953 Aub heterozygotes, oxidized
...........GTGTGAAATACGAAGTTGATTG..................................................................................................................	22	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GTGAAATACGAAGTTGATTGTA................................................................................................................	22	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CAGTTTTTCATTTGGCCTGGCT.......................................................................................	22	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CAGTTTTTCATTTGGCCTGGCTAG.....................................................................................	24	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CAGTTTTTCATTTGGCCTGGCTAGC....................................................................................	25	1	9	2	0	1	1	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................AGTTTTTCATTTGGCCTGGCT.......................................................................................	21	1	125	2	5	0	1	5	21	13	3	0	0	4	6	1	0	2	2	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	0	4	0	1	0	0	0	0	0	0	0	2	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	4	1	0	0	0	0	0	1	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................AGTTTTTCATTTGGCCTGGCTA......................................................................................	22	1	46	6	2	0	1	3	0	0	3	0	0	5	0	2	0	1	2	2	0	0	0	2	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................AGTTTTTCATTTGGCCTG..........................................................................................	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................AGTTTTTCATTTGGCCTGGC........................................................................................	20	1	6	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................AGTTTTTCATTTGGCCTGGCTAGC....................................................................................	24	1	3899	937	227	5	81	72	0	121	168	20	0	493	52	52	1	138	121	84	0	5	2	9	8	18	0	1	0	635	1	1	5	8	0	0	0	0	0	6	2	0	4	29	0	27	17	3	0	0	3	1	0	12	0	0	0	3	2	1	36	47	0	12	0	0	15	0	0	7	3	0	0	0	1	0	0	1	0	0	0	0	1	0	42	9	0	3	3	0	0	0	0	1	0	17	0	0	24	0	3	6	1	0	0	3	0	0	1	0	0	5	0	73	0	44	44	4	1	1	0	0	0	2	26	1	0	0	12	0	35	3	5	0	0	5	0	4	1	0	0	3	1	0	0	4	0	1	4	0	0	1	0	0	0	0	2	0	1	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................AGTTTTTCATTTGGCCTGGCTAG.....................................................................................	23	1	689	56	12	1	24	31	0	7	12	8	1	29	27	31	2	10	31	5	21	4	0	9	0	3	0	1	6	14	2	2	4	1	0	1	0	0	2	0	2	1	1	6	0	7	3	0	0	0	2	0	0	5	0	0	0	2	0	0	5	5	0	2	0	0	2	1	1	1	1	0	1	0	1	0	0	0	0	2	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	138	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23	0	37	37	0	0	0	0	0	0	0	0	0	0	0	0	0	18	17	0	2	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................................................TAGCTGCCTTGTGAAGGG.............................................	18	1	2029	46	122	322	56	87	0	533	161	65	45	18	111	11	5	89	17	50	0	29	12	25	23	23	16	11	1	1	3	4	8	5	4	11	4	0	12	8	11	2	16	1	0	3	1	4	0	5	0	0	2	2	1	0	0	0	0	6	0	0	1	0	0	2	2	0	4	0	0	0	0	1	1	0	1	1	0	0	0	0	0	0	0	1	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	3	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	1	0	0	0	0	1	0	0	1	0	0	1	0	0	1	0	0	0	1	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................TAGCTGCCTTGTGAAGGGCT...........................................	20	1	17774	615	1000	1614	864	872	513	1031	612	814	1279	103	1130	317	486	409	380	113	175	820	107	256	493	119	478	129	431	3	79	69	40	249	47	40	295	156	63	311	62	43	158	55	11	104	36	51	29	21	5	3	15	20	7	15	11	34	22	90	32	4	9	13	0	6	29	2	47	34	18	12	7	23	21	7	9	9	6	1	0	25	9	2	0	2	2	1	0	9	1	2	4	0	3	0	0	0	0	2	5	6	4	11	4	0	1	2	2	3	1	0	2	1	48	0	0	0	1	0	3	0	0	1	4	0	1	0	5	3	1	0	0	0	0	0	0	0	1	0	0	0	0	0	1	2	2	0	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................TAGCTGCCTTGTGAAGGGCTTA.........................................	22	1	68451	5998	3786	1911	4833	3544	1091	1555	1336	4482	2058	1205	3743	1184	1972	681	1457	593	355	1067	538	623	580	1464	408	401	430	710	562	444	356	1822	147	66	151	0	1261	305	1101	148	311	1256	81	1130	1053	148	423	123	919	119	74	262	73	75	169	635	193	204	404	438	116	248	54	66	347	36	128	365	194	111	50	283	275	31	42	54	26	222	23	221	71	32	210	221	33	204	197	51	30	36	44	162	9	124	47	16	6	22	96	15	34	94	22	132	4	102	38	29	60	85	54	0	27	2	2	62	7	2	6	40	63	60	6	58	11	6	23	22	1	0	44	39	43	24	18	33	30	30	2	21	21	2	12	1	17	16	2	8	4	4	9	1	6	6	0	6	1	1	2	5	0	2	2	1	3	0	2	2	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................AGCTGCCTTGTGAAGGGCT...........................................	19	1	62	0	0	43	0	0	0	1	0	0	1	1	0	1	2	1	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................AGCTGCCTTGTGAAGGGC............................................	18	1	12	0	0	6	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................AGCTGCCTTGTGAAGGGCTTAC........................................	22	1	2	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................AGCTGCCTTGTGAAGGGCTTA.........................................	21	1	186	5	4	5	2	4	0	1	0	1	4	3	5	6	12	1	2	0	0	3	0	0	0	2	11	0	0	0	0	0	0	26	0	0	0	0	1	0	0	0	1	3	0	23	1	0	0	1	0	0	1	0	0	0	0	12	0	0	12	1	0	5	0	0	9	0	0	6	3	0	0	1	3	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................AGCTGCCTTGTGAAGGGCTT..........................................	20	1	1770	68	53	528	53	68	67	75	84	55	79	29	12	32	242	22	16	9	1	15	4	10	13	6	18	3	14	4	2	3	4	19	0	18	0	75	0	1	1	6	4	1	2	9	1	0	1	1	4	2	6	2	0	1	1	1	0	3	0	0	0	1	0	1	1	1	4	1	1	1	3	1	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................GCTGCCTTGTGAAGGGCTT..........................................	19	1	371	23	33	47	23	27	0	24	22	17	32	9	6	16	6	16	7	2	0	9	3	2	0	2	10	3	0	0	0	1	0	0	0	1	10	0	3	0	5	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................GCTGCCTTGTGAAGGGCTTA.........................................	20	1	46	2	0	1	3	1	0	1	1	0	2	0	1	0	0	0	0	0	0	3	0	0	0	0	0	0	3	0	1	1	0	1	0	0	0	0	0	0	1	0	0	2	0	0	3	0	0	1	0	0	0	0	0	0	1	0	0	0	2	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................GCTGCCTTGTGAAGGGCT...........................................	18	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................CTGCCTTGTGAAGGGCTT..........................................	18	1	286	6	3	65	7	6	0	8	6	38	16	1	6	2	3	2	2	1	0	13	1	0	10	1	45	0	25	0	0	3	0	0	2	5	0	0	1	3	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................CTGCCTTGTGAAGGGCTTAC........................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................CTGCCTTGTGAAGGGCTTACGTG.....................................	23	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................CTGCCTTGTGAAGGGCTTA.........................................	19	1	9	0	0	1	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................TGCCTTGTGAAGGGCTTA.........................................	18	1	25	0	0	2	0	0	0	0	0	5	0	0	2	0	0	0	0	0	0	0	0	0	4	1	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................GCCTTGTGAAGGGCTTACGTGTAATTGC..............................	28	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AGGGCTTACGTGTAATTGC..............................	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	V009 CMEL1	V010 MLDmD20c5	SRR032095 AGO1 IP dcr2 knockdown	V026 1182-4H cell	V024 kc167 cell	GSM424739 S2 parental	V019 GM2 cell	V018 Kc167 cell	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR029031 loqs-ORF knockdown	V008 S2-DRSC	V033 CMEW1 Cl.8+ cell	V067 S2-NP	GSM280088 S2cell (AGO1IP)	V020 S2R+ cell	V025 S2R+ cell	V021 ML-DmD21 cell	GSM424740 S2 pKF63 stably transfected	SRR029028 untreated (mock)	V090 CS  male total RNA	V075 ML-DmBG1-C1	SRR029030 dcr-2 knockdown	V082 embryo 14-24hr	SRR029033 lacZ knockdown	V076 ML-DmBG3-C2	SRR029032 r2d2 knockdown	V011 Sg4	V084 female, one day	V083 male, one day	V028 CMEW1 Cl.8+ cell	SRR031696_2152	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR032096 AGO2 IP dcr2 knockdown	SRR029029 dcr-1 knockdown	GSM424741 S2 pKF63 transiently transfected	V002 IR+	SRR032094 ago2 knockdown	V001 IR-	V098 dcr-2[L811fsX] ovary	SRR032093 ago1 knockdown	S30 s2-48 #2	V097 CS ovary	SRR029633 total small RNAs from hen1 homozygous flies	S15 S2 -48 #1	GSM379059	GSM379065 Zuc Heterozygote	SRR014273 Ovary_rep1_Har_P	S33 KC-48 #2	V089 ago2[414] ovary total RNA	GSM280087 S2cell (AGO2IP)	V081 embryo 2-6hr	V088 r2d2[1] ovary total RNA	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR031692 Total small RNAs from Oregon R	GSM379057 Krimp Mutant	S32 s2+48 #2	SRR031701 Total small RNAs from r2d2 heterozygous flies	S13 6-10h #2 (11)	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR031697 Total small RNAs from dcr-2 heterozygous flies	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR014277 Ovary_rep1 NA_P	SRR031703 Total small RNAs from r2d2 homozygous flies	V064 ago2[414], ovary, AGO1IP	S31 s2+48 #1	SRR001338 IR non-beta-eliminated	SRR031699 Total small RNAs from dcr-2 homozygous flies	GSM379056 Krimp Heterozygote	V066 r2d2[1], ovary, AGO1IP	SRR001349 heterozygous dcr-2_untreated	SRR001347 ago2 untreated	GSM379053 Aub Mutant	GSM379055 Flam Mutant	GSM379051 Armi Mutant	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	S16 KC -48 #1	V063 CS,ovary,AGO1IP	SRR001664 homozygous dcr-2_untreated	GSM239052 S2 cells, non beta-eliminated	SRR014275 Ovary_rep1 LK_P	S12 6-10h #1 (10)	S24 male body #2	GSM379050 Armi Heterozygote	S19 2-4day pupae #1	S29 male head #1	GSM379064 Vasa Mutant	GSM379063 Vasa Heterozygote	GSM379060 SpnE Heterozygote	GSM379054 Flam Heterozygote	S28 0-2d pupae	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	S22 female head #1	SRR032092 mock oxidized	SRR014280 Ovary_rep1 w1118_P	SRR023400 total RNA extracted from P19 cells	GSM379058	S8 S2-48,+48, KC-48, +48 mix	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM379066 Zuc Mutant	GSM280085 WT testes (18-24nt)	GSM280084 loqs-/- ovaries (18-29nt)	S7 12-24hr embryo	GSM379052 Aub Heterozygote	S27 0-1d Pupae (w)	GSM379061 Squ Heterozygote	GSM379062 Squ Mutant	S35 KC+48 #2	S23 female body #2	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR023197 RNA Library from S2 control cells	GSM343287 Drosophila Toll 10b mutant embryos	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR031693_4	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379067 SpnE Mutant	S34 KC+48 #1	S2 female head	S17 3rd inster #1	SRR001345 ago2 non-beta-eliminated	S25 1st instar #1	SRR014282 Ovary_rep1 wK_P	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	GSM280082 WT ovaries (18-29nt)	SRR023399 RNA bound by P19 protein	SRR023402 total RNA extracted from NLS-P19 cells	S10 2-6h #1 (8)	S9 0-1h #3 (7)	S26 1st instar #2	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	GSM180333 late embryo (12-24)	S4 female body	GSM180332 mid embryo (6-10)	SRR001341 WT_males non-beta-eliminated	GSM180328 adult heads (female heads, male heads)	S3 male body	SRR001339 WT_females non-beta-eliminated	S14 0-1hr #1 (A)	SRR001344 dcr-2 beta-eliminated	SRR001348 ago2 oxidized	S1 male head	SRR001343 dcr-2 non-beta-eliminated	GSM467730 r2d2	GSM239041 fly heads, non beta-eliminated	GSM467729 WT	S5 imaginal disc	SRR001337 WT_females beta-eliminated	S18 3rd inster #2	S20 2-4day pupae#2	GSM239051 S2 cells, beta-eliminated	S21 disk #2	GSM467731 loq	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR010955 Aub IP in Ago3 heterozygotes	GSM180329 adult bodies (female bodies, male bodies)	SRR010954 Aub trans-heterozygotes, oxidized	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR001340 IR beta-eliminated	GSM180334 larvae: 1st instar and 3rd instars	GSM180331 early embryo (2-6)	S11 2-6h #2 (9)	OSS8 Drosophila OSS cell small RNA libraries, rep4	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM180330 very early embryo (0-1)	GSM180335 imaginal discs	SRR010956 Piwi IP in Ago3 heterozygotes	SRR001342 WT_males beta-eliminated	GSM280086 WT ovaries (AGO2IP)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR010960 wt, oxidized	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	SRR010959 Ago3 IP in heterozygotes	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR010958 Piwi IP in Ago3 trans-heterozygotes	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR001346 ago2 beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	SRR010953 Aub heterozygotes, oxidized
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......................................................................................GCTGCCTTGTGAAGGGCTTACGTGTAA..................................	27	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0