Page generated on Fri Oct 15 12:01:33 2010

dme-mir-981




dme-mir-981

View dme-mir-981 on miRBase
miRNALengthPerfect(sense)Perfect(antisense)5' moR5'armLoop3'arm3' moROtherLoop SizeMatureStar
dme-mir-98114620014353217721980143201980142177


GCTCCTTGCACTGCAACTTAGGAGAAACATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAAATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAAAATCAACGCTCAAGGCCGCCCAAGGATT
.............................(((.(((.(....((((((((((..(((((((((((((...........))).))))))))))..))))))))))....).))).))).............................-39.20
..((((((..(.((.......(((.....(((.(((.(....((((((((((..(((((((((((((...........))).))))))))))..))))))))))....).))).))).........)))...)).)..))))))..-49.34
Sense strand
                                                                                                                                                  SizeBlastTotalS29 male head #1SRR031696_2152 SRR031703 Total small RNAs from r2d2 homozygous flies S22 female head #1SRR029633 total small RNAs from hen1 homozygous flies SRR031701 Total small RNAs from r2d2 heterozygous flies SRR031699 Total small RNAs from dcr-2 homozygous flies SRR031697 Total small RNAs from dcr-2 heterozygous flies SRR031692 Total small RNAs from Oregon R S2 female headSRR001345 ago2 non-beta-eliminated SRR001338 IR non-beta-eliminated S1 male headS33 KC-48 #2SRR001664 homozygous dcr-2_untreated SRR001349 heterozygous dcr-2_untreated SRR001347 ago2 untreated SRR001341 WT_males non-beta-eliminated SRR001339 WT_females non-beta-eliminated S21 disk #2SRR001343 dcr-2 non-beta-eliminated S5 imaginal discGSM180328 adult heads (female heads, male heads) SRR001344 dcr-2 beta-eliminated SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies S16 KC -48 #1S28 0-2d pupaeS19 2-4day pupae #1S24 male body #2S27 0-1d Pupae (w)V090 CS  male total RNA  V033 CMEW1 Cl.8+ cellV082 embryo 14-24hrS7 12-24hr embryoGSM246084 D. melanogaster adult male heads 454 S35 KC+48 #2S26 1st instar #2SRR001337 WT_females beta-eliminated S34 KC+48 #1SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies SRR001348 ago2 oxidized S13 6-10h #2 (11)SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies S10 2-6h #1 (8)V081 embryo 2-6hrV028 CMEW1 Cl.8+ cellS25 1st instar #1S9 0-1h #3 (7)S23 female body #2GSM180335 imaginal discs S17 3rd inster #1S32 s2+48 #2V083 male, one dayS8 S2-48,+48, KC-48, +48 mixV002 IR+V001 IR-S12 6-10h #1 (10)GSM239041 fly heads, non beta-eliminated SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies SRR001346 ago2 beta-eliminated S20 2-4day pupae#2S18 3rd inster #2V008 S2-DRSCSRR031693_4 S4 female bodyGSM180333 late embryo (12-24) GSM239052 S2 cells, non beta-eliminated V084 female, one dayS3 male bodySRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb SRR001340 IR beta-eliminated V097 CS ovaryV009 CMEL1V063 CS,ovary,AGO1IPS11 2-6h #2 (9)V076 ML-DmBG3-C2SRR001342 WT_males beta-eliminated GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day GSM180334 larvae: 1st instar and 3rd instars V010 MLDmD20c5V011 Sg4SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb GSM280085 WT testes (18-24nt) GSM180331 early embryo (2-6) GSM180332 mid embryo (6-10) GSM467729 WT GSM467731 loq S14 0-1hr #1 (A)OSS2 Drosophila OSS cell small RNA libraries, rep1 V075 ML-DmBG1-C1GSM280087 S2cell (AGO2IP) V018 Kc167 cellGSM239050 fly heads, beta-eliminated SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb GSM467730 r2d2 OSS6 Drosophila OSS cell small RNA libraries, rep2 V019 GM2 cellSRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb V089 ago2[414] ovary total RNA  V026 1182-4H cellOSS7 Drosophila OSS cell small RNA libraries, rep3 SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 GSM180329 adult bodies (female bodies, male bodies) V064 ago2[414], ovary, AGO1IPSRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 OSS8 Drosophila OSS cell small RNA libraries, rep4 V098 dcr-2[L811fsX] ovarySRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb V020 S2R+ cellS31 s2+48 #1S30 s2-48 #2V025 S2R+ cellV088 r2d2[1] ovary total RNA  GSM379065 Zuc Heterozygote V066 r2d2[1], ovary, AGO1IPSRR014275 Ovary_rep1 LK_P V065 dcr-2[L811fsX], ovary, AGO1IPS15 S2 -48 #1GSM379067 SpnE Mutant GSM379058 GSM379056 Krimp Heterozygote SRR010960 wt, oxidized GSM379052 Aub Heterozygote GSM280088 S2cell (AGO1IP) GSM180330 very early embryo (0-1) GSM343287 Drosophila Toll 10b mutant embryos V067 S2-NPV024 kc167 cellGSM280086 WT ovaries (AGO2IP) SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 SRR014282 Ovary_rep1 wK_P SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 GSM239051 S2 cells, beta-eliminated SRR032094 ago2 knockdown GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries SRR029031 loqs-ORF knockdown SRR010957 Aub IP in Ago3 trans-heterozygotes GSM379050 Armi Heterozygote SRR010952 Ago3 trans-heterozygotes, oxidized SRR023197 RNA Library from S2 control cells SRR032092 mock oxidized SRR029033 lacZ knockdown SRR010956 Piwi IP in Ago3 heterozygotes GSM424740 S2 pKF63 stably transfected SRR010954 Aub trans-heterozygotes, oxidized SRR023400 total RNA extracted from P19 cells GSM379063 Vasa Heterozygote SRR023407 RNA bound by NLS-P19 protein GSM180337 tissue culture cells (S2 only) SRR023402 total RNA extracted from NLS-P19 cells GSM280084 loqs-/- ovaries (18-29nt) GSM379054 Flam Heterozygote GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries SRR014273 Ovary_rep1_Har_P GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries GSM379064 Vasa Mutant GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) GSM379053 Aub Mutant GSM379055 Flam Mutant SRR032095 AGO1 IP dcr2 knockdown SRR029029 dcr-1 knockdown SRR010959 Ago3 IP in heterozygotes SRR014280 Ovary_rep1 w1118_P SRR029032 r2d2 knockdown SRR014277 Ovary_rep1 NA_P GSM424741 S2 pKF63 transiently transfected SRR032096 AGO2 IP dcr2 knockdownV021 ML-DmD21 cellGSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0 GSM379051 Armi Mutant GSM379062 Squ Mutant GSM379061 Squ Heterozygote SRR010958 Piwi IP in Ago3 trans-heterozygotes GSM280082 WT ovaries (18-29nt) SRR023399 RNA bound by P19 protein SRR010955 Aub IP in Ago3 heterozygotes GSM379060 SpnE Heterozygote SRR029030 dcr-2 knockdown GSM424739 S2 parental GSM280083 dcr-2-/- ovaries (18-29nt) GSM379059 SRR029028 untreated (mock) SRR032093 ago1 knockdown SRR010951 Ago3 heterozygotes, oxidized SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 GSM379057 Krimp Mutant GSM379066 Zuc Mutant SRR010953 Aub heterozygotes, oxidized
.............................TCCTCACTGAAGTCGGGTTT.................................................................................................2011000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................ACTGAAGTCGGGTTTCGTT.............................................................................................1921000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TGAAGTCGGGTTTCGTTAGCAG........................................................................................2211000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................AAGTCGGGTTTCGTTAGCA.........................................................................................1911000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TCGGGTTTCGTTAGCAGCG......................................................................................1911000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TCGGGTTTCGTTAGCAGCGGGC...................................................................................221320000010110000001011000000000002010000006001000000000100000110000300000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TCGGGTTTCGTTAGCAGCGGG....................................................................................2111000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TCGGGTTTCGTTAGCAGCGG.....................................................................................2012000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TCGGGTTTCGTTAGCAGC.......................................................................................1812000000000000000000000000000000100000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CGGGTTTCGTTAGCAGCGGG....................................................................................2017300004001100000000000000011000013000010002000011900000000000070001100000000000000000000000000100000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
..........................................CGGGTTTCGTTAGCAGCGG.....................................................................................19113000020000000000000000000000000040000000000000700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CGGGTTTCGTTAGCAGCGGGCT..................................................................................2211713569495155165172828530231121492111148321027122071535424860312312045111804520000050154553029021714000120371334160710001101030004110000023005010031100120200000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CGGGTTTCGTTAGCAGCG......................................................................................181436100000000010000000000000000000240000000000000700000020000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CGGGTTTCGTTAGCAGCGGGCTGT................................................................................2412000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CGGGTTTCGTTAGCAGCGGGC...................................................................................211221000021312001000000000001010000126490000005001036700000000420050007900010800110000000000000002003000010000000000200100000000000000010000000000000000000000000000000000000000000000000000000000000
...........................................GGGTTTCGTTAGCAGCGGG....................................................................................1912000001000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................GGGTTTCGTTAGCAGCGGGC...................................................................................2012000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................GGGTTTCGTTAGCAGCGGGCT..................................................................................21124020030002020000001100000000000215000000100002100000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................GGTTTCGTTAGCAGCGGGC...................................................................................1911000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................GTTTTAATAAATTCAACAAG..............................................................2012000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................AGTTCGTTGTCGACGAAACCTGCA........................................2411000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................AGTTCGTTGTCGACGAAACCTG..........................................2211000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TTCGTTGTCGACGAAACC............................................181224474252914182226032528300000001600000000000000290300000000000000010000100001000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TTCGTTGTCGACGAAACCTG..........................................201194692265318930845721754220010891123710231318052462651648344127273066954121767815174521166118403602660002143483412014901239305330100002010000050010000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TTCGTTGTCGACGAAACCTGCATG......................................2416600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TTCGTTGTCGACGAAACCTGC.........................................2116791810998111046779458033904721321027241953118726461153870358959774873180018002939901475089696861171127711154217853115974017229508285681741818353532175659262213137245937126525105203616513017701120731314951012010453310512310343010112001011101100100000000000000000000000000000000000000000000000000000000000000000
....................................................................................TTCGTTGTCGACGAAACCTGCA........................................221104916306761074766686640540540204426449735353937113914822222258312501378127544844814544681263770295301805728501442507671831313322392672956621811010422788194183617515313214615696421216559119401228101871320677747163301131010278418226456131474961010326010230201403021101010010011010000000000000000000000000000000000000000000000000000000000000000
....................................................................................TTCGTTGTCGACGAAACCTGCAT.......................................231142056211339810533436351872514203013283366139162571215648380056204211000100610100000210000000010000200100010100001010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TTCGTTGTCGACGAAACCT...........................................1912832531691423414651683569223731201705105981042253202313312101001400193601800023201410000010000140000020000010000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TCGTTGTCGACGAAACCTGCA........................................21156616169125625837271519581127149121181542072232100200001001000100013200000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TCGTTGTCGACGAAACCT...........................................18112020200103001100110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TCGTTGTCGACGAAACCTGC.........................................2012834241723318222373153204677707025030001000001020000100003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TCGTTGTCGACGAAACCTG..........................................191821217227414111001000330000000000000010000000210000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TCGTTGTCGACGAAACCTGCAT.......................................221251500330000001000020000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................CGTTGTCGACGAAACCTGCA........................................20137491220532000000000000000010002000000300000000010000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................CGTTGTCGACGAAACCTGC.........................................19124044161201011000001100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................CGTTGTCGACGAAACCTG..........................................1815010011000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................CGTTGTCGACGAAACCTGCAT.......................................2111000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................GTTGTCGACGAAACCTGC.........................................18110204010130475053001316602004000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................GTTGTCGACGAAACCTGCAT.......................................2012000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................GTTGTCGACGAAACCTGCA........................................1917202000807136015101010001000000000021000000000000000001000100000000100000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................TTGTCGACGAAACCTGCA........................................1817010100000000002100000000000100000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
Antisense strand
                                                                                                                                                  SizeBlastTotalS29 male head #1SRR031696_2152 SRR031703 Total small RNAs from r2d2 homozygous flies S22 female head #1SRR029633 total small RNAs from hen1 homozygous flies SRR031701 Total small RNAs from r2d2 heterozygous flies SRR031699 Total small RNAs from dcr-2 homozygous flies SRR031697 Total small RNAs from dcr-2 heterozygous flies SRR031692 Total small RNAs from Oregon R S2 female headSRR001345 ago2 non-beta-eliminated SRR001338 IR non-beta-eliminated S1 male headS33 KC-48 #2SRR001664 homozygous dcr-2_untreated SRR001349 heterozygous dcr-2_untreated SRR001347 ago2 untreated SRR001341 WT_males non-beta-eliminated SRR001339 WT_females non-beta-eliminated S21 disk #2SRR001343 dcr-2 non-beta-eliminated S5 imaginal discGSM180328 adult heads (female heads, male heads) SRR001344 dcr-2 beta-eliminated SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies S16 KC -48 #1S28 0-2d pupaeS19 2-4day pupae #1S24 male body #2S27 0-1d Pupae (w)V090 CS  male total RNA  V033 CMEW1 Cl.8+ cellV082 embryo 14-24hrS7 12-24hr embryoGSM246084 D. melanogaster adult male heads 454 S35 KC+48 #2S26 1st instar #2SRR001337 WT_females beta-eliminated S34 KC+48 #1SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies SRR001348 ago2 oxidized S13 6-10h #2 (11)SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies S10 2-6h #1 (8)V081 embryo 2-6hrV028 CMEW1 Cl.8+ cellS25 1st instar #1S9 0-1h #3 (7)S23 female body #2GSM180335 imaginal discs S17 3rd inster #1S32 s2+48 #2V083 male, one dayS8 S2-48,+48, KC-48, +48 mixV002 IR+V001 IR-S12 6-10h #1 (10)GSM239041 fly heads, non beta-eliminated SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies SRR001346 ago2 beta-eliminated S20 2-4day pupae#2S18 3rd inster #2V008 S2-DRSCSRR031693_4 S4 female bodyGSM180333 late embryo (12-24) GSM239052 S2 cells, non beta-eliminated V084 female, one dayS3 male bodySRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb SRR001340 IR beta-eliminated V097 CS ovaryV009 CMEL1V063 CS,ovary,AGO1IPS11 2-6h #2 (9)V076 ML-DmBG3-C2SRR001342 WT_males beta-eliminated GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day GSM180334 larvae: 1st instar and 3rd instars V010 MLDmD20c5V011 Sg4SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb GSM280085 WT testes (18-24nt) GSM180331 early embryo (2-6) GSM180332 mid embryo (6-10) GSM467729 WT GSM467731 loq S14 0-1hr #1 (A)OSS2 Drosophila OSS cell small RNA libraries, rep1 V075 ML-DmBG1-C1GSM280087 S2cell (AGO2IP) V018 Kc167 cellGSM239050 fly heads, beta-eliminated SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb GSM467730 r2d2 OSS6 Drosophila OSS cell small RNA libraries, rep2 V019 GM2 cellSRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb V089 ago2[414] ovary total RNA  V026 1182-4H cellOSS7 Drosophila OSS cell small RNA libraries, rep3 SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 GSM180329 adult bodies (female bodies, male bodies) V064 ago2[414], ovary, AGO1IPSRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 OSS8 Drosophila OSS cell small RNA libraries, rep4 V098 dcr-2[L811fsX] ovarySRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb V020 S2R+ cellS31 s2+48 #1S30 s2-48 #2V025 S2R+ cellV088 r2d2[1] ovary total RNA  GSM379065 Zuc Heterozygote V066 r2d2[1], ovary, AGO1IPSRR014275 Ovary_rep1 LK_P V065 dcr-2[L811fsX], ovary, AGO1IPS15 S2 -48 #1GSM379067 SpnE Mutant GSM379058 GSM379056 Krimp Heterozygote SRR010960 wt, oxidized GSM379052 Aub Heterozygote GSM280088 S2cell (AGO1IP) GSM180330 very early embryo (0-1) GSM343287 Drosophila Toll 10b mutant embryos V067 S2-NPV024 kc167 cellGSM280086 WT ovaries (AGO2IP) SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 SRR014282 Ovary_rep1 wK_P SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 GSM239051 S2 cells, beta-eliminated SRR032094 ago2 knockdown GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries SRR029031 loqs-ORF knockdown SRR010957 Aub IP in Ago3 trans-heterozygotes GSM379050 Armi Heterozygote SRR010952 Ago3 trans-heterozygotes, oxidized SRR023197 RNA Library from S2 control cells SRR032092 mock oxidized SRR029033 lacZ knockdown SRR010956 Piwi IP in Ago3 heterozygotes GSM424740 S2 pKF63 stably transfected SRR010954 Aub trans-heterozygotes, oxidized SRR023400 total RNA extracted from P19 cells GSM379063 Vasa Heterozygote SRR023407 RNA bound by NLS-P19 protein GSM180337 tissue culture cells (S2 only) SRR023402 total RNA extracted from NLS-P19 cells GSM280084 loqs-/- ovaries (18-29nt) GSM379054 Flam Heterozygote GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries SRR014273 Ovary_rep1_Har_P GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries GSM379064 Vasa Mutant GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) GSM379053 Aub Mutant GSM379055 Flam Mutant SRR032095 AGO1 IP dcr2 knockdown SRR029029 dcr-1 knockdown SRR010959 Ago3 IP in heterozygotes SRR014280 Ovary_rep1 w1118_P SRR029032 r2d2 knockdown SRR014277 Ovary_rep1 NA_P GSM424741 S2 pKF63 transiently transfected SRR032096 AGO2 IP dcr2 knockdownV021 ML-DmD21 cellGSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0 GSM379051 Armi Mutant GSM379062 Squ Mutant GSM379061 Squ Heterozygote SRR010958 Piwi IP in Ago3 trans-heterozygotes GSM280082 WT ovaries (18-29nt) SRR023399 RNA bound by P19 protein SRR010955 Aub IP in Ago3 heterozygotes GSM379060 SpnE Heterozygote SRR029030 dcr-2 knockdown GSM424739 S2 parental GSM280083 dcr-2-/- ovaries (18-29nt) GSM379059 SRR029028 untreated (mock) SRR032093 ago1 knockdown SRR010951 Ago3 heterozygotes, oxidized SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 GSM379057 Krimp Mutant GSM379066 Zuc Mutant SRR010953 Aub heterozygotes, oxidized
.......................................AGTCGGGTTTCGTTAGCAGCGGG....................................................................................2311000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
........................................GTCGGGTTTCGTTAGCAGCGGG....................................................................................22117010110000100050010000100011001000001000000000000000000000000000000100000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TCGGGTTTCGTTAGCAGCGGG....................................................................................21124902110000001050010000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
.........................................TCGGGTTTCGTTAGCAGCGGGC...................................................................................2212000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................AGTTCGTTGTCGACGAAACCTG..........................................2211000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................AGTTCGTTGTCGACGAAACCT...........................................2117000010000000000000000000000000010000000100000100000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TCGTTGTCGACGAAACCT...........................................1811000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000