Page generated on Fri Oct 15 12:01:40 2010

dme-mir-983-1



dme-mir-983-1

View dme-mir-983-1 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-983-1	140	82298	60	2	61727		20627		2	14	61727	20627

ATTCATATTATATGCATATGCTATTATATTGCAATAATTAAATAATACGTTTCGAACTAATGATTTTCAGTTCATTCATTAGGTAGTTACGCATTATCTAGTTGTTGTAAACATTCAACTCGCTGGCGTATGAGAAATTA
............................((((((((((((.(((((.(((..(...(((((((............)))))))...)..))).))))).))))))))))))..............................-25.00
.......((((((((....((.......((((((((((((.(((((.(((..(...(((((((............)))))))...)..))).))))).))))))))))))...........))..)))))))).......-32.27
Sense strand

	Size	Blast	Total	V076 ML-DmBG3-C2	GSM280085 WT testes (18-24nt)	V065 dcr-2[L811fsX], ovary, AGO1IP	V098 dcr-2[L811fsX] ovary	V081 embryo 2-6hr	V097 CS ovary	V082 embryo 14-24hr	V090 CS  male total RNA	V066 r2d2[1], ovary, AGO1IP	V024 kc167 cell	V084 female, one day	S21 disk #2	GSM280082 WT ovaries (18-29nt)	V063 CS,ovary,AGO1IP	V088 r2d2[1] ovary total RNA	V018 Kc167 cell	V083 male, one day	GSM379065 Zuc Heterozygote	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	SRR031697 Total small RNAs from dcr-2 heterozygous flies	S5 imaginal disc	SRR014280 Ovary_rep1 w1118_P	S24 male body #2	V089 ago2[414] ovary total RNA	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V026 1182-4H cell	GSM379057 Krimp Mutant	V064 ago2[414], ovary, AGO1IP	V021 ML-DmD21 cell	GSM379066 Zuc Mutant	OSS2 Drosophila OSS cell small RNA libraries, rep1	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	OSS8 Drosophila OSS cell small RNA libraries, rep4	S9 0-1h #3 (7)	SRR014282 Ovary_rep1 wK_P	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR010954 Aub trans-heterozygotes, oxidized	OSS7 Drosophila OSS cell small RNA libraries, rep3	V009 CMEL1	SRR010953 Aub heterozygotes, oxidized	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379067 SpnE Mutant	GSM180335 imaginal discs	GSM379064 Vasa Mutant	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	V075 ML-DmBG1-C1	V008 S2-DRSC	GSM379062 Squ Mutant	S32 s2+48 #2	V010 MLDmD20c5	SRR014277 Ovary_rep1 NA_P	GSM379063 Vasa Heterozygote	SRR031699 Total small RNAs from dcr-2 homozygous flies	S27 0-1d Pupae (w)	S28 0-2d pupae	GSM379056 Krimp Heterozygote	S33 KC-48 #2	SRR031692 Total small RNAs from Oregon R	GSM379058	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR029028 untreated (mock)	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR031696_2152	GSM379052 Aub Heterozygote	SRR014275 Ovary_rep1 LK_P	S35 KC+48 #2	SRR029633 total small RNAs from hen1 homozygous flies	SRR031703 Total small RNAs from r2d2 homozygous flies	V067 S2-NP	S29 male head #1	GSM379051 Armi Mutant	GSM379061 Squ Heterozygote	V001 IR-	SRR014273 Ovary_rep1_Har_P	S19 2-4day pupae #1	S13 6-10h #2 (11)	GSM280083 dcr-2-/- ovaries (18-29nt)	S31 s2+48 #1	GSM379054 Flam Heterozygote	GSM379060 SpnE Heterozygote	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR023400 total RNA extracted from P19 cells	SRR029030 dcr-2 knockdown	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	GSM280084 loqs-/- ovaries (18-29nt)	GSM379053 Aub Mutant	V019 GM2 cell	SRR023197 RNA Library from S2 control cells	S3 male body	GSM379055 Flam Mutant	GSM379059	V033 CMEW1 Cl.8+ cell	S12 6-10h #1 (10)	S16 KC -48 #1	GSM379050 Armi Heterozygote	SRR032095 AGO1 IP dcr2 knockdown	GSM280088 S2cell (AGO1IP)	V011 Sg4	V002 IR+	SRR010958 Piwi IP in Ago3 trans-heterozygotes	V028 CMEW1 Cl.8+ cell	SRR010959 Ago3 IP in heterozygotes	S10 2-6h #1 (8)	V025 S2R+ cell	S11 2-6h #2 (9)	S34 KC+48 #1	S17 3rd inster #1	SRR032094 ago2 knockdown	SRR001349 heterozygous dcr-2_untreated	S15 S2 -48 #1	SRR029031 loqs-ORF knockdown	S23 female body #2	S18 3rd inster #2	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR023399 RNA bound by P19 protein	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR010955 Aub IP in Ago3 heterozygotes	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	V020 S2R+ cell	SRR001343 dcr-2 non-beta-eliminated	S8 S2-48,+48, KC-48, +48 mix	S22 female head #1	S14 0-1hr #1 (A)	S4 female body	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR010956 Piwi IP in Ago3 heterozygotes	SRR023407 RNA bound by NLS-P19 protein	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	GSM180334 larvae: 1st instar and 3rd instars	S25 1st instar #1	GSM180330 very early embryo (0-1)	S20 2-4day pupae#2	S2 female head	GSM180329 adult bodies (female bodies, male bodies)	S26 1st instar #2	SRR001341 WT_males non-beta-eliminated	GSM180328 adult heads (female heads, male heads)	S7 12-24hr embryo	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR001345 ago2 non-beta-eliminated	SRR023402 total RNA extracted from NLS-P19 cells	GSM467731 loq	GSM467729 WT	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR032096 AGO2 IP dcr2 knockdown	SRR001339 WT_females non-beta-eliminated	S30 s2-48 #2	SRR001664 homozygous dcr-2_untreated	SRR001338 IR non-beta-eliminated	GSM239052 S2 cells, non beta-eliminated	GSM467730 r2d2	GSM239041 fly heads, non beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	GSM280087 S2cell (AGO2IP)	GSM280086 WT ovaries (AGO2IP)	SRR001347 ago2 untreated	GSM180333 late embryo (12-24)	GSM239051 S2 cells, beta-eliminated	GSM180332 mid embryo (6-10)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR031693_4	SRR001337 WT_females beta-eliminated	SRR032092 mock oxidized	SRR029033 lacZ knockdown	GSM424740 S2 pKF63 stably transfected	GSM180337 tissue culture cells (S2 only)	SRR010960 wt, oxidized	SRR001340 IR beta-eliminated	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	S1 male head	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	SRR029029 dcr-1 knockdown	GSM180331 early embryo (2-6)	SRR029032 r2d2 knockdown	GSM424741 S2 pKF63 transiently transfected	SRR001344 dcr-2 beta-eliminated	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001348 ago2 oxidized	GSM343287 Drosophila Toll 10b mutant embryos	GSM424739 S2 parental	SRR032093 ago1 knockdown	SRR001346 ago2 beta-eliminated
......................ATTATATTGCAATAATTAA...................................................................................................	19	2	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................TAAATAATACGTTTCGAAC...................................................................................	19	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................AAATAATACGTTTCGAACT..................................................................................	19	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................AATAATACGTTTCGAACTAATGA.............................................................................	23	2	21	16	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................AATAATACGTTTCGAACTA.................................................................................	19	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................AATAATACGTTTCGAACTAA................................................................................	20	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................AATAATACGTTTCGAACTAATG..............................................................................	22	2	21	15	0	0	0	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................AATAATACGTTTCGAACTAAT...............................................................................	21	2	27	24	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................AATAATACGTTTCGAACT..................................................................................	18	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................ATAATACGTTTCGAACTAATG..............................................................................	21	2	14203	11591	148	206	167	212	95	197	80	44	118	29	91	34	58	39	109	48	45	23	67	24	16	40	15	13	36	38	39	17	40	11	23	8	30	13	33	19	8	18	13	6	3	15	5	6	5	5	14	6	7	15	8	4	11	18	10	10	8	11	3	0	3	6	2	9	3	4	4	8	6	6	6	2	3	3	6	1	2	4	3	3	3	2	0	7	3	3	4	4	3	3	4	5	0	3	2	0	0	2	0	0	5	0	4	1	4	1	1	0	2	1	2	1	2	4	2	2	0	0	1	3	0	0	0	1	0	0	0	0	1	0	2	0	1	0	0	0	1	0	0	0	1	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................ATAATACGTTTCGAACTAAT...............................................................................	20	2	12179	11510	16	70	24	50	14	34	36	11	51	2	6	3	25	4	32	16	2	3	11	0	0	6	1	2	7	24	0	13	12	0	15	1	11	6	3	8	13	9	9	16	0	0	4	0	3	3	8	0	0	6	2	0	3	0	0	4	0	4	0	3	14	0	8	0	1	2	1	5	6	2	0	0	0	0	1	0	1	0	0	0	3	0	3	0	1	0	2	0	1	1	1	0	0	1	0	0	2	1	0	0	1	0	0	0	0	0	0	0	2	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................ATAATACGTTTCGAACTAATGA.............................................................................	22	2	33257	24908	133	1134	968	799	647	516	258	309	153	255	129	119	160	249	144	124	167	144	84	67	131	44	103	102	70	36	73	69	65	50	42	63	35	8	38	35	6	38	39	5	40	30	17	31	34	32	22	19	19	21	23	23	13	11	13	16	9	9	18	22	4	13	1	3	15	10	13	1	4	8	6	12	7	9	7	8	8	7	9	8	5	13	5	5	8	4	7	9	3	6	2	5	5	4	5	0	3	5	2	10	3	9	1	6	3	1	4	1	0	1	0	0	1	0	3	0	4	1	2	0	0	0	0	0	2	2	2	1	1	1	0	0	0	1	0	0	0	0	0	1	0	0	1	1	0	0	0	1	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................ATAATACGTTTCGAACTAATGAT............................................................................	23	2	36	22	1	4	1	0	3	0	0	1	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................................ATTAGGTAGTTACGCATTATCT.........................................	22	2	15283	6621	5132	441	439	409	238	122	76	122	79	116	98	223	126	59	33	53	49	50	39	49	29	46	37	29	15	22	19	27	10	38	9	25	6	17	4	7	0	3	4	0	12	12	15	17	12	8	4	19	11	1	11	11	8	2	2	2	2	3	5	0	1	4	6	12	5	4	3	7	4	6	6	6	11	5	3	4	9	4	6	8	6	0	7	4	3	6	1	0	2	3	4	3	8	0	3	2	5	1	7	0	0	0	1	1	0	3	0	5	2	1	0	0	1	1	0	1	0	0	0	0	1	1	1	1	0	0	0	0	0	0	0	0	1	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................ATTAGGTAGTTACGCATTATCTA........................................	23	2	145	1	29	1	2	8	0	0	0	2	0	0	26	5	1	0	0	0	1	0	1	18	0	7	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	1	1	0	7	0	1	0	0	0	1	0	0	0	0	4	4	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................ATTAGGTAGTTACGCATTATC..........................................	21	2	3213	1781	664	52	103	180	47	76	49	16	6	20	11	12	13	8	17	32	5	10	3	1	3	6	12	0	1	5	1	7	4	5	3	0	1	7	0	2	5	0	1	4	3	1	0	1	0	3	0	1	0	0	0	0	0	0	4	1	0	0	1	3	2	4	2	0	0	0	0	0	0	0	2	0	1	2	1	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................ATTAGGTAGTTACGCATTA............................................	19	2	80	46	20	1	1	3	1	0	4	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................TTAGGTAGTTACGCATTATCTA........................................	22	2	24	0	2	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	6	0	3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................TTAGGTAGTTACGCATTAT...........................................	19	2	17	10	4	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................TTAGGTAGTTACGCATTATC..........................................	20	2	62	25	28	0	1	1	1	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................TTAGGTAGTTACGCATTATCT.........................................	21	2	457	127	155	3	0	2	4	0	0	0	1	3	45	7	2	0	0	0	0	0	1	22	0	17	0	0	0	0	0	0	0	1	5	0	2	8	0	2	0	1	0	0	0	0	6	0	0	0	0	1	6	0	0	0	0	0	2	0	5	0	1	0	0	0	6	0	0	2	0	0	0	0	0	0	0	0	0	4	0	1	0	0	2	0	0	0	1	0	0	0	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................TTAGGTAGTTACGCATTA............................................	18	2	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TAGGTAGTTACGCATTATCT.........................................	20	2	5	2	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................TAGTTACGCATTATCTAGTTG....................................	21	2	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	V076 ML-DmBG3-C2	GSM280085 WT testes (18-24nt)	V065 dcr-2[L811fsX], ovary, AGO1IP	V098 dcr-2[L811fsX] ovary	V081 embryo 2-6hr	V097 CS ovary	V082 embryo 14-24hr	V090 CS  male total RNA	V066 r2d2[1], ovary, AGO1IP	V024 kc167 cell	V084 female, one day	S21 disk #2	GSM280082 WT ovaries (18-29nt)	V063 CS,ovary,AGO1IP	V088 r2d2[1] ovary total RNA	V018 Kc167 cell	V083 male, one day	GSM379065 Zuc Heterozygote	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	SRR031697 Total small RNAs from dcr-2 heterozygous flies	S5 imaginal disc	SRR014280 Ovary_rep1 w1118_P	S24 male body #2	V089 ago2[414] ovary total RNA	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V026 1182-4H cell	GSM379057 Krimp Mutant	V064 ago2[414], ovary, AGO1IP	V021 ML-DmD21 cell	GSM379066 Zuc Mutant	OSS2 Drosophila OSS cell small RNA libraries, rep1	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	OSS8 Drosophila OSS cell small RNA libraries, rep4	S9 0-1h #3 (7)	SRR014282 Ovary_rep1 wK_P	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR010954 Aub trans-heterozygotes, oxidized	OSS7 Drosophila OSS cell small RNA libraries, rep3	V009 CMEL1	SRR010953 Aub heterozygotes, oxidized	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379067 SpnE Mutant	GSM180335 imaginal discs	GSM379064 Vasa Mutant	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	V075 ML-DmBG1-C1	V008 S2-DRSC	GSM379062 Squ Mutant	S32 s2+48 #2	V010 MLDmD20c5	SRR014277 Ovary_rep1 NA_P	GSM379063 Vasa Heterozygote	SRR031699 Total small RNAs from dcr-2 homozygous flies	S27 0-1d Pupae (w)	S28 0-2d pupae	GSM379056 Krimp Heterozygote	S33 KC-48 #2	SRR031692 Total small RNAs from Oregon R	GSM379058	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR029028 untreated (mock)	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR031696_2152	GSM379052 Aub Heterozygote	SRR014275 Ovary_rep1 LK_P	S35 KC+48 #2	SRR029633 total small RNAs from hen1 homozygous flies	SRR031703 Total small RNAs from r2d2 homozygous flies	V067 S2-NP	S29 male head #1	GSM379051 Armi Mutant	GSM379061 Squ Heterozygote	V001 IR-	SRR014273 Ovary_rep1_Har_P	S19 2-4day pupae #1	S13 6-10h #2 (11)	GSM280083 dcr-2-/- ovaries (18-29nt)	S31 s2+48 #1	GSM379054 Flam Heterozygote	GSM379060 SpnE Heterozygote	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR023400 total RNA extracted from P19 cells	SRR029030 dcr-2 knockdown	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	GSM280084 loqs-/- ovaries (18-29nt)	GSM379053 Aub Mutant	V019 GM2 cell	SRR023197 RNA Library from S2 control cells	S3 male body	GSM379055 Flam Mutant	GSM379059	V033 CMEW1 Cl.8+ cell	S12 6-10h #1 (10)	S16 KC -48 #1	GSM379050 Armi Heterozygote	SRR032095 AGO1 IP dcr2 knockdown	GSM280088 S2cell (AGO1IP)	V011 Sg4	V002 IR+	SRR010958 Piwi IP in Ago3 trans-heterozygotes	V028 CMEW1 Cl.8+ cell	SRR010959 Ago3 IP in heterozygotes	S10 2-6h #1 (8)	V025 S2R+ cell	S11 2-6h #2 (9)	S34 KC+48 #1	S17 3rd inster #1	SRR032094 ago2 knockdown	SRR001349 heterozygous dcr-2_untreated	S15 S2 -48 #1	SRR029031 loqs-ORF knockdown	S23 female body #2	S18 3rd inster #2	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR023399 RNA bound by P19 protein	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR010955 Aub IP in Ago3 heterozygotes	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	V020 S2R+ cell	SRR001343 dcr-2 non-beta-eliminated	S8 S2-48,+48, KC-48, +48 mix	S22 female head #1	S14 0-1hr #1 (A)	S4 female body	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR010956 Piwi IP in Ago3 heterozygotes	SRR023407 RNA bound by NLS-P19 protein	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	GSM180334 larvae: 1st instar and 3rd instars	S25 1st instar #1	GSM180330 very early embryo (0-1)	S20 2-4day pupae#2	S2 female head	GSM180329 adult bodies (female bodies, male bodies)	S26 1st instar #2	SRR001341 WT_males non-beta-eliminated	GSM180328 adult heads (female heads, male heads)	S7 12-24hr embryo	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR001345 ago2 non-beta-eliminated	SRR023402 total RNA extracted from NLS-P19 cells	GSM467731 loq	GSM467729 WT	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR032096 AGO2 IP dcr2 knockdown	SRR001339 WT_females non-beta-eliminated	S30 s2-48 #2	SRR001664 homozygous dcr-2_untreated	SRR001338 IR non-beta-eliminated	GSM239052 S2 cells, non beta-eliminated	GSM467730 r2d2	GSM239041 fly heads, non beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	GSM280087 S2cell (AGO2IP)	GSM280086 WT ovaries (AGO2IP)	SRR001347 ago2 untreated	GSM180333 late embryo (12-24)	GSM239051 S2 cells, beta-eliminated	GSM180332 mid embryo (6-10)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR031693_4	SRR001337 WT_females beta-eliminated	SRR032092 mock oxidized	SRR029033 lacZ knockdown	GSM424740 S2 pKF63 stably transfected	GSM180337 tissue culture cells (S2 only)	SRR010960 wt, oxidized	SRR001340 IR beta-eliminated	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	S1 male head	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	SRR029029 dcr-1 knockdown	GSM180331 early embryo (2-6)	SRR029032 r2d2 knockdown	GSM424741 S2 pKF63 transiently transfected	SRR001344 dcr-2 beta-eliminated	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001348 ago2 oxidized	GSM343287 Drosophila Toll 10b mutant embryos	GSM424739 S2 parental	SRR032093 ago1 knockdown	SRR001346 ago2 beta-eliminated
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