Page generated on Fri Oct 15 12:01:41 2010

dme-mir-984



dme-mir-984

View dme-mir-984 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-984	139	79278	6	1	64482		14799	1	1	16	64482	14799

GAATGGGAATGGCTTCTATTGCGTAGAAACAAATTTCATTGAGGTAAATACGGTTGGAATTTTGTCTTTTAACTATAAATCCAACCGAATTTGGCTCGGCGAAATTTTTCAGTTTACTGGCGTCGAAAAAACATCTCGT
.........................((((..((((((.(((((.(((((.((((((((.((..((......))...)).)))))))).))))).))))).)))))))))).............................-28.80
..((((((.((..(((...(((.((((((((((((((.(((((.(((((.((((((((.((..((......))...)).)))))))).))))).))))).)))))))....)))).))))))..)))....))))))))-38.50
Sense strand

	Size	Blast	Total	V076 ML-DmBG3-C2	V081 embryo 2-6hr	V098 dcr-2[L811fsX] ovary	V097 CS ovary	GSM280085 WT testes (18-24nt)	V090 CS  male total RNA	S21 disk #2	V082 embryo 14-24hr	S5 imaginal disc	V018 Kc167 cell	V065 dcr-2[L811fsX], ovary, AGO1IP	V084 female, one day	V083 male, one day	GSM280082 WT ovaries (18-29nt)	V089 ago2[414] ovary total RNA	S24 male body #2	V024 kc167 cell	V088 r2d2[1] ovary total RNA	V063 CS,ovary,AGO1IP	V066 r2d2[1], ovary, AGO1IP	S9 0-1h #3 (7)	GSM379066 Zuc Mutant	V064 ago2[414], ovary, AGO1IP	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM180335 imaginal discs	SRR032095 AGO1 IP dcr2 knockdown	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	GSM379065 Zuc Heterozygote	S32 s2+48 #2	V021 ML-DmD21 cell	SRR014280 Ovary_rep1 w1118_P	S19 2-4day pupae #1	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	S35 KC+48 #2	S33 KC-48 #2	V026 1182-4H cell	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	S28 0-2d pupae	SRR029031 loqs-ORF knockdown	S3 male body	S16 KC -48 #1	GSM379067 SpnE Mutant	GSM379057 Krimp Mutant	GSM379053 Aub Mutant	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	S27 0-1d Pupae (w)	S31 s2+48 #1	GSM379062 Squ Mutant	GSM280088 S2cell (AGO1IP)	V075 ML-DmBG1-C1	GSM379058	SRR031697 Total small RNAs from dcr-2 heterozygous flies	V009 CMEL1	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379063 Vasa Heterozygote	S30 s2-48 #2	V019 GM2 cell	SRR014273 Ovary_rep1_Har_P	SRR014277 Ovary_rep1 NA_P	S10 2-6h #1 (8)	GSM379052 Aub Heterozygote	SRR014275 Ovary_rep1 LK_P	GSM379051 Armi Mutant	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	GSM379064 Vasa Mutant	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	GSM379054 Flam Heterozygote	S15 S2 -48 #1	S17 3rd inster #1	SRR014282 Ovary_rep1 wK_P	V008 S2-DRSC	GSM379050 Armi Heterozygote	S34 KC+48 #1	S29 male head #1	GSM379056 Krimp Heterozygote	S23 female body #2	V010 MLDmD20c5	GSM379060 SpnE Heterozygote	GSM379059	V020 S2R+ cell	SRR031696_2152	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	V001 IR-	GSM280084 loqs-/- ovaries (18-29nt)	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR010954 Aub trans-heterozygotes, oxidized	SRR032096 AGO2 IP dcr2 knockdown	SRR029028 untreated (mock)	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR029032 r2d2 knockdown	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM379055 Flam Mutant	GSM379061 Squ Heterozygote	V033 CMEW1 Cl.8+ cell	SRR010953 Aub heterozygotes, oxidized	V028 CMEW1 Cl.8+ cell	V067 S2-NP	S22 female head #1	SRR029633 total small RNAs from hen1 homozygous flies	OSS8 Drosophila OSS cell small RNA libraries, rep4	S4 female body	S18 3rd inster #2	S8 S2-48,+48, KC-48, +48 mix	OSS7 Drosophila OSS cell small RNA libraries, rep3	V025 S2R+ cell	S20 2-4day pupae#2	SRR029030 dcr-2 knockdown	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR031692 Total small RNAs from Oregon R	S2 female head	GSM280087 S2cell (AGO2IP)	S14 0-1hr #1 (A)	V002 IR+	S13 6-10h #2 (11)	V011 Sg4	SRR032093 ago1 knockdown	SRR001664 homozygous dcr-2_untreated	S11 2-6h #2 (9)	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	GSM180329 adult bodies (female bodies, male bodies)	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR001349 heterozygous dcr-2_untreated	GSM467729 WT	SRR031701 Total small RNAs from r2d2 heterozygous flies	S26 1st instar #2	S7 12-24hr embryo	SRR031693_4	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	S25 1st instar #1	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	GSM343287 Drosophila Toll 10b mutant embryos	S12 6-10h #1 (10)	GSM180333 late embryo (12-24)	GSM180332 mid embryo (6-10)	SRR001345 ago2 non-beta-eliminated	GSM467731 loq	SRR010959 Ago3 IP in heterozygotes	GSM180328 adult heads (female heads, male heads)	SRR032092 mock oxidized	SRR010956 Piwi IP in Ago3 heterozygotes	S1 male head	GSM246084 D. melanogaster adult male heads 454	GSM180334 larvae: 1st instar and 3rd instars	SRR001344 dcr-2 beta-eliminated	SRR001338 IR non-beta-eliminated	GSM467730 r2d2	GSM280086 WT ovaries (AGO2IP)	SRR001347 ago2 untreated	GSM239051 S2 cells, beta-eliminated	SRR032094 ago2 knockdown	SRR001341 WT_males non-beta-eliminated	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR001337 WT_females beta-eliminated	SRR023197 RNA Library from S2 control cells	SRR029033 lacZ knockdown	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	SRR001343 dcr-2 non-beta-eliminated	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM239050 fly heads, beta-eliminated	SRR029029 dcr-1 knockdown	GSM180331 early embryo (2-6)	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR023399 RNA bound by P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	GSM239052 S2 cells, non beta-eliminated	GSM239041 fly heads, non beta-eliminated	GSM424739 S2 parental	SRR001346 ago2 beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized
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...................................TCATTGAGGTAAATACGGTTGGA.................................................................................	23	1	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TCATTGAGGTAAATACGGTTGG..................................................................................	22	1	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................CATTGAGGTAAATACGGTTGG..................................................................................	21	1	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................CATTGAGGTAAATACGGTTGGA.................................................................................	22	1	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................ATTGAGGTAAATACGGTTGGA.................................................................................	21	1	8	6	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................ATTGAGGTAAATACGGTTGGAATTT.............................................................................	25	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................ATTGAGGTAAATACGGTTGGAAT...............................................................................	23	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................TTGAGGTAAATACGGTTGGAATT..............................................................................	23	1	81	14	2	18	9	9	2	5	0	3	2	2	0	0	0	1	3	3	0	0	1	0	0	0	0	2	0	1	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................TTGAGGTAAATACGGTTGGAAT...............................................................................	22	1	210	27	5	29	15	61	12	6	0	6	11	6	0	0	0	6	4	1	2	1	2	0	1	2	0	1	0	0	0	2	0	0	1	0	0	0	0	1	0	0	1	0	1	1	1	0	0	0	0	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................TTGAGGTAAATACGGTTGGA.................................................................................	20	1	13	1	0	0	0	8	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................ATCCAACCGAATTTGGCT...........................................	18	1	17	11	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................ATCCAACCGAATTTGGCTCGG........................................	21	1	12700	9627	699	404	189	18	38	7	180	3	51	383	67	109	113	6	4	33	9	122	74	1	28	59	46	1	7	26	31	1	3	9	0	9	1	0	12	12	0	4	0	0	12	19	7	9	0	0	10	9	13	12	13	14	8	5	0	5	13	6	0	10	5	10	11	3	0	6	0	0	10	3	8	0	0	7	1	5	3	2	0	8	7	2	2	2	5	0	0	3	2	0	0	6	1	6	0	3	5	0	2	0	0	0	0	2	0	0	2	1	2	0	0	0	4	0	1	1	1	0	0	0	2	0	0	1	0	0	0	0	0	0	1	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................ATCCAACCGAATTTGGCTCGGC.......................................	22	1	699	547	29	0	1	9	5	0	9	0	2	27	15	4	1	3	0	2	1	4	13	0	0	1	0	5	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	1	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	4	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................ATCCAACCGAATTTGGCTCGGCGA.....................................	24	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................ATCCAACCGAATTTGGCTCGGCG......................................	23	1	52	27	0	6	0	1	0	1	0	0	0	3	0	0	2	0	0	0	0	0	0	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................ATCCAACCGAATTTGGCTCG.........................................	20	1	1155	970	32	12	4	20	13	6	7	2	3	3	3	23	9	0	3	0	0	1	1	0	0	1	8	0	0	2	0	3	2	0	1	1	2	1	0	1	0	0	1	0	0	0	1	0	0	0	0	0	1	0	1	1	0	0	0	1	1	1	0	0	1	0	0	0	0	1	0	0	0	1	0	1	2	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................ATCCAACCGAATTTGGCTC..........................................	19	1	14	10	1	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TCCAACCGAATTTGGCTCG.........................................	19	1	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TCCAACCGAATTTGGCTCGG........................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................CCAACCGAATTTGGCTCGG........................................	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................CAACCGAATTTGGCTCGG........................................	18	1	91	61	5	1	0	0	0	0	2	0	1	10	0	2	3	0	0	1	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................CAACCGAATTTGGCTCGGC.......................................	19	1	6	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................TTTCAGTTTACTGGCGTCGAA............	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	V076 ML-DmBG3-C2	V081 embryo 2-6hr	V098 dcr-2[L811fsX] ovary	V097 CS ovary	GSM280085 WT testes (18-24nt)	V090 CS  male total RNA	S21 disk #2	V082 embryo 14-24hr	S5 imaginal disc	V018 Kc167 cell	V065 dcr-2[L811fsX], ovary, AGO1IP	V084 female, one day	V083 male, one day	GSM280082 WT ovaries (18-29nt)	V089 ago2[414] ovary total RNA	S24 male body #2	V024 kc167 cell	V088 r2d2[1] ovary total RNA	V063 CS,ovary,AGO1IP	V066 r2d2[1], ovary, AGO1IP	S9 0-1h #3 (7)	GSM379066 Zuc Mutant	V064 ago2[414], ovary, AGO1IP	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM180335 imaginal discs	SRR032095 AGO1 IP dcr2 knockdown	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	GSM379065 Zuc Heterozygote	S32 s2+48 #2	V021 ML-DmD21 cell	SRR014280 Ovary_rep1 w1118_P	S19 2-4day pupae #1	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	S35 KC+48 #2	S33 KC-48 #2	V026 1182-4H cell	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	S28 0-2d pupae	SRR029031 loqs-ORF knockdown	S3 male body	S16 KC -48 #1	GSM379067 SpnE Mutant	GSM379057 Krimp Mutant	GSM379053 Aub Mutant	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	S27 0-1d Pupae (w)	S31 s2+48 #1	GSM379062 Squ Mutant	GSM280088 S2cell (AGO1IP)	V075 ML-DmBG1-C1	GSM379058	SRR031697 Total small RNAs from dcr-2 heterozygous flies	V009 CMEL1	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379063 Vasa Heterozygote	S30 s2-48 #2	V019 GM2 cell	SRR014273 Ovary_rep1_Har_P	SRR014277 Ovary_rep1 NA_P	S10 2-6h #1 (8)	GSM379052 Aub Heterozygote	SRR014275 Ovary_rep1 LK_P	GSM379051 Armi Mutant	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	GSM379064 Vasa Mutant	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	GSM379054 Flam Heterozygote	S15 S2 -48 #1	S17 3rd inster #1	SRR014282 Ovary_rep1 wK_P	V008 S2-DRSC	GSM379050 Armi Heterozygote	S34 KC+48 #1	S29 male head #1	GSM379056 Krimp Heterozygote	S23 female body #2	V010 MLDmD20c5	GSM379060 SpnE Heterozygote	GSM379059	V020 S2R+ cell	SRR031696_2152	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	V001 IR-	GSM280084 loqs-/- ovaries (18-29nt)	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR010954 Aub trans-heterozygotes, oxidized	SRR032096 AGO2 IP dcr2 knockdown	SRR029028 untreated (mock)	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR029032 r2d2 knockdown	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM379055 Flam Mutant	GSM379061 Squ Heterozygote	V033 CMEW1 Cl.8+ cell	SRR010953 Aub heterozygotes, oxidized	V028 CMEW1 Cl.8+ cell	V067 S2-NP	S22 female head #1	SRR029633 total small RNAs from hen1 homozygous flies	OSS8 Drosophila OSS cell small RNA libraries, rep4	S4 female body	S18 3rd inster #2	S8 S2-48,+48, KC-48, +48 mix	OSS7 Drosophila OSS cell small RNA libraries, rep3	V025 S2R+ cell	S20 2-4day pupae#2	SRR029030 dcr-2 knockdown	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR031692 Total small RNAs from Oregon R	S2 female head	GSM280087 S2cell (AGO2IP)	S14 0-1hr #1 (A)	V002 IR+	S13 6-10h #2 (11)	V011 Sg4	SRR032093 ago1 knockdown	SRR001664 homozygous dcr-2_untreated	S11 2-6h #2 (9)	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	GSM180329 adult bodies (female bodies, male bodies)	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR001349 heterozygous dcr-2_untreated	GSM467729 WT	SRR031701 Total small RNAs from r2d2 heterozygous flies	S26 1st instar #2	S7 12-24hr embryo	SRR031693_4	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	S25 1st instar #1	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	GSM343287 Drosophila Toll 10b mutant embryos	S12 6-10h #1 (10)	GSM180333 late embryo (12-24)	GSM180332 mid embryo (6-10)	SRR001345 ago2 non-beta-eliminated	GSM467731 loq	SRR010959 Ago3 IP in heterozygotes	GSM180328 adult heads (female heads, male heads)	SRR032092 mock oxidized	SRR010956 Piwi IP in Ago3 heterozygotes	S1 male head	GSM246084 D. melanogaster adult male heads 454	GSM180334 larvae: 1st instar and 3rd instars	SRR001344 dcr-2 beta-eliminated	SRR001338 IR non-beta-eliminated	GSM467730 r2d2	GSM280086 WT ovaries (AGO2IP)	SRR001347 ago2 untreated	GSM239051 S2 cells, beta-eliminated	SRR032094 ago2 knockdown	SRR001341 WT_males non-beta-eliminated	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR001337 WT_females beta-eliminated	SRR023197 RNA Library from S2 control cells	SRR029033 lacZ knockdown	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	SRR001343 dcr-2 non-beta-eliminated	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM239050 fly heads, beta-eliminated	SRR029029 dcr-1 knockdown	GSM180331 early embryo (2-6)	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR023399 RNA bound by P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	GSM239052 S2 cells, non beta-eliminated	GSM239041 fly heads, non beta-eliminated	GSM424739 S2 parental	SRR001346 ago2 beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized
......................................TTGAGGTAAATACGGTTGGAAT...............................................................................	22	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TGAGGTAAATACGGTTGGAAT...............................................................................	21	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................TAAATCCAACCGAATTTGGCT...........................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................AACCGAATTTGGCTCGGC.......................................	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0