Page generated on Fri Oct 15 12:01:36 2010

dme-mir-986




dme-mir-986

View dme-mir-986 on miRBase
miRNALengthPerfect(sense)Perfect(antisense)5' moR5'armLoop3'arm3' moROtherLoop SizeMatureStar
dme-mir-986149136087651341181101790169241341181790


GTCGTAGCGTTAGCCACGCAGAGGACACACCTGAAATTACCCATCTCGAATAGCGTTGTGACTGAGGTAACTGCGCATCGAATCTACTCAGCGGCGAGGCTATTCAAGTAAGGTTATTTTGGGCCAGCGACTTTACGACCGGAAAACAA
.............................((..((((.(((...((.(((((((.((((..(((((.......((...))......)))))..)))).))))))).))...))).))))..))..........................-34.52
((((((.((((.(((......(((.....)))(((((.(((...((.(((((((.((((..(((((.......((...))......)))))..)))).))))))).))...))).))))).))).))))....))))))..........-45.72
Sense strand
                                                                                                                                                     SizeBlastTotalV098 dcr-2[L811fsX] ovaryV065 dcr-2[L811fsX], ovary, AGO1IPV076 ML-DmBG3-C2SRR031696_2152 SRR029633 total small RNAs from hen1 homozygous flies V010 MLDmD20c5V064 ago2[414], ovary, AGO1IPV019 GM2 cellV083 male, one dayV084 female, one dayV082 embryo 14-24hrV097 CS ovaryV089 ago2[414] ovary total RNA  V063 CS,ovary,AGO1IPV081 embryo 2-6hrSRR031703 Total small RNAs from r2d2 homozygous flies V033 CMEW1 Cl.8+ cellV066 r2d2[1], ovary, AGO1IPV090 CS  male total RNA  SRR031692 Total small RNAs from Oregon R V028 CMEW1 Cl.8+ cellSRR031699 Total small RNAs from dcr-2 homozygous flies SRR031693_4 SRR031701 Total small RNAs from r2d2 heterozygous flies V088 r2d2[1] ovary total RNA  SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 SRR001664 homozygous dcr-2_untreated SRR031697 Total small RNAs from dcr-2 heterozygous flies V009 CMEL1GSM379063 Vasa Heterozygote GSM379060 SpnE Heterozygote SRR014282 Ovary_rep1 wK_P GSM379065 Zuc Heterozygote SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies V001 IR-GSM379057 Krimp Mutant GSM379053 Aub Mutant GSM379052 Aub Heterozygote GSM379056 Krimp Heterozygote SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb SRR001349 heterozygous dcr-2_untreated S24 male body #2V002 IR+SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies GSM379064 Vasa Mutant GSM280083 dcr-2-/- ovaries (18-29nt) SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 V021 ML-DmD21 cellS29 male head #1GSM280084 loqs-/- ovaries (18-29nt) S28 0-2d pupaeS27 0-1d Pupae (w)GSM379066 Zuc Mutant GSM280085 WT testes (18-24nt) GSM280082 WT ovaries (18-29nt) GSM343287 Drosophila Toll 10b mutant embryos S19 2-4day pupae #1GSM379062 Squ Mutant GSM379061 Squ Heterozygote GSM379050 Armi Heterozygote OSS6 Drosophila OSS cell small RNA libraries, rep2 GSM467730 r2d2 GSM379059 S23 female body #2GSM379051 Armi Mutant SRR001347 ago2 untreated OSS2 Drosophila OSS cell small RNA libraries, rep1 GSM379058 SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies OSS7 Drosophila OSS cell small RNA libraries, rep3 SRR001341 WT_males non-beta-eliminated GSM467729 WT S33 KC-48 #2SRR001339 WT_females non-beta-eliminated SRR001343 dcr-2 non-beta-eliminated S12 6-10h #1 (10)SRR010954 Aub trans-heterozygotes, oxidized S22 female head #1OSS8 Drosophila OSS cell small RNA libraries, rep4 SRR010960 wt, oxidized S9 0-1h #3 (7)SRR001345 ago2 non-beta-eliminated SRR014275 Ovary_rep1 LK_P S35 KC+48 #2V024 kc167 cellS10 2-6h #1 (8)V018 Kc167 cellS17 3rd inster #1S13 6-10h #2 (11)V075 ML-DmBG1-C1S32 s2+48 #2GSM379067 SpnE Mutant S18 3rd inster #2S2 female headS14 0-1hr #1 (A)SRR010953 Aub heterozygotes, oxidized S34 KC+48 #1S31 s2+48 #1S3 male bodySRR001348 ago2 oxidized S16 KC -48 #1S4 female bodySRR032092 mock oxidized SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 SRR001344 dcr-2 beta-eliminated S20 2-4day pupae#2V067 S2-NPV008 S2-DRSCS21 disk #2S7 12-24hr embryoSRR014280 Ovary_rep1 w1118_P SRR029030 dcr-2 knockdown SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 SRR001337 WT_females beta-eliminated SRR029028 untreated (mock) V011 Sg4SRR010955 Aub IP in Ago3 heterozygotes GSM467731 loq S1 male headGSM180328 adult heads (female heads, male heads) SRR032095 AGO1 IP dcr2 knockdown SRR014273 Ovary_rep1_Har_P S25 1st instar #1S30 s2-48 #2SRR001338 IR non-beta-eliminated GSM280087 S2cell (AGO2IP) GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day V020 S2R+ cellSRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb V026 1182-4H cellS5 imaginal discS8 S2-48,+48, KC-48, +48 mixSRR032094 ago2 knockdown SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 GSM180334 larvae: 1st instar and 3rd instars GSM280088 S2cell (AGO1IP) S11 2-6h #2 (9)GSM180333 late embryo (12-24) GSM180332 mid embryo (6-10) SRR010959 Ago3 IP in heterozygotes SRR029032 r2d2 knockdown V025 S2R+ cellSRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb GSM180329 adult bodies (female bodies, male bodies) GSM280086 WT ovaries (AGO2IP) GSM379054 Flam Heterozygote GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) GSM246084 D. melanogaster adult male heads 454 GSM180331 early embryo (2-6) SRR014277 Ovary_rep1 NA_P S15 S2 -48 #1SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb S26 1st instar #2SRR029031 loqs-ORF knockdown SRR010952 Ago3 trans-heterozygotes, oxidized SRR010956 Piwi IP in Ago3 heterozygotes SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb SRR010951 Ago3 heterozygotes, oxidized GSM180335 imaginal discs SRR023402 total RNA extracted from NLS-P19 cells GSM180330 very early embryo (0-1) GSM424741 S2 pKF63 transiently transfected SRR032096 AGO2 IP dcr2 knockdownSRR001346 ago2 beta-eliminated GSM239051 S2 cells, beta-eliminated GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries SRR010957 Aub IP in Ago3 trans-heterozygotes SRR023197 RNA Library from S2 control cells SRR029033 lacZ knockdown GSM424740 S2 pKF63 stably transfected SRR023400 total RNA extracted from P19 cells SRR023407 RNA bound by NLS-P19 protein GSM180337 tissue culture cells (S2 only) SRR001340 IR beta-eliminated GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries SRR001342 WT_males beta-eliminated GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries GSM239050 fly heads, beta-eliminated GSM379055 Flam Mutant SRR029029 dcr-1 knockdown GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0 SRR010958 Piwi IP in Ago3 trans-heterozygotes SRR023399 RNA bound by P19 protein GSM239052 S2 cells, non beta-eliminated GSM239041 fly heads, non beta-eliminated GSM424739 S2 parental SRR032093 ago1 knockdown
..........TAGCCACGCAGAGGACACACCTGAAAT................................................................................................................2711000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GCAGAGGACACACCTGAAATTACCC...........................................................................................................2511000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GACACACCTGAAATTACCCA..........................................................................................................2011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CACACCTGAAATTACCCA..........................................................................................................1811000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
...............................TGAAATTACCCATCTCGAATAGCGT.............................................................................................2512000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................ATCTCGAATAGCGTTGTGACTGA....................................................................................23133632032101212003010010100000000000001000000010000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................ATCTCGAATAGCGTTGTGACTG.....................................................................................221471213004013014000000210020017000000000000000100000000002100000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................ATCTCGAATAGCGTTGTGAC.......................................................................................2014100011000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................ATCTCGAATAGCGTTGTGA........................................................................................1911000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................ATCTCGAATAGCGTTGTGACT......................................................................................2117200000001001000000000000000000000000000000000000001000000100000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TCTCGAATAGCGTTGTGACTGAGGTAAC..............................................................................2812001000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TCTCGAATAGCGTTGTGACTGA....................................................................................2211024171699313764948450203291316436342105253721842423232123882039189017151424164311841313113410727988961037845904649616568632628618554392526436463441441375416365382314365325337268203230243292273218218302142171981861231118811011411010610280108589210585779155671615738641927472959454854148363998125233182719112138161682118161166843510774657101322341313420323010221000111000000000000000000000000000
...........................................TCTCGAATAGCGTTGTGACTGAG...................................................................................23111161951206738322332141921183617152012141018192258101210235581713713412893101445504231151534605023422175120010011201301212151102102200231000000000100000000000010000000000001000000000000000000000000000000000000000000000000000000000
...........................................TCTCGAATAGCGTTGTGACTGAGGTA................................................................................2614000000001000000000000000000001001000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TCTCGAATAGCGTTGTGACTGAGGTAA...............................................................................2712000000000000100000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TCTCGAATAGCGTTGTGACTGAGG..................................................................................24131100001101000001010002000102000201001100061000000020000100000000000000000300100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TCTCGAATAGCGTTGTGACT......................................................................................201704572351314103835773021034442171714059467966168973915876726410661144011833563178172223833161722222220103616123295157841361291462313218831112058200020122324504400645203040211860200100211310000100001010100100101001000103000000000000001000000101000000000000000000000000
...........................................TCTCGAATAGCGTTGTGA........................................................................................18175218221622013026542151612014125363129117151024085591113550101510330504011112401001100000105000002017115000000200000000200050100200010000100000000000000000000000000000010000000000000000000000000000000000000000000
...........................................TCTCGAATAGCGTTGTGACTGAGGT.................................................................................2519100001000000100000000000100000010000000000000000000000000001000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TCTCGAATAGCGTTGTGAC.......................................................................................19158711146411283201142482201871724344010042220002212214022801012000070130001000014022000000212130000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TCTCGAATAGCGTTGTGACTGAGGTAACT.............................................................................2911000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TCTCGAATAGCGTTGTGACTG.....................................................................................211203152994201326371046988887408889628439277320306287388355236152441251229189328179116229117126114136116916192184791201089277119655873496955419417751623206055116192935351116361325201023268294229294515101726122511122808022050210401700511401313212210101121100200102000011001010000000000000000000000000000000000000000
............................................CTCGAATAGCGTTGTGACTGA....................................................................................211495291310779011312858204018505241213268111021133111111200505520003101630200101202000300101021203105010000000100100000000000000000000001020000000000000000000000000000000000000000000000000000000000000000000000
............................................CTCGAATAGCGTTGTGACT......................................................................................191552119190000000000200000261010000100020000002000000000000000000000000000001001103000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................CTCGAATAGCGTTGTGACTGAGG..................................................................................231395040040110010000400012010040001000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................CTCGAATAGCGTTGTGACTG.....................................................................................201202934275360622421104303534224050033101071110000100000100000210000000000001201001000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................CTCGAATAGCGTTGTGAC.......................................................................................181220000190000000000000000010010000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................CTCGAATAGCGTTGTGACTGAG...................................................................................22135541119222100915564027113031226137401921524114211212400313204080500100201001000000301001102100200000000100001000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
............................................CTCGAATAGCGTTGTGACTGAGGT.................................................................................2412100000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TCGAATAGCGTTGTGACTG.....................................................................................19153247104030002030011100231000001000210100020000000101000000011100101011001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TCGAATAGCGTTGTGACTGAGGT.................................................................................2311000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TCGAATAGCGTTGTGACTGAG...................................................................................21115100011001000000000011000000010100010010000101000000000010000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TCGAATAGCGTTGTGACTGA....................................................................................2012732640146891013012009415601435000406511111235039100040425303005070112200011001000000000010000000000000010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.............................................TCGAATAGCGTTGTGACTGAGG..................................................................................22120900002001002000000000000000000000000000001000002000000100000000000010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TCGAATAGCGTTGTGACT......................................................................................18116231100020100000000010000000001000000000000000010001000000000000000000000000000010000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................CGAATAGCGTTGTGACTGAG...................................................................................2011000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................CGAATAGCGTTGTGACTGAGGT.................................................................................221361253003013211010000101000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................CGAATAGCGTTGTGACTGAGG..................................................................................21117301100300100100001000000010100000001000001000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................CGAATAGCGTTGTGACTGAGGTA................................................................................231601016013035450002030106110010000000031000000000000000100000000100000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................CGAATAGCGTTGTGACTGAGGTAA...............................................................................2414200000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................CGAATAGCGTTGTGACTGA....................................................................................19122041210201000011011011200000100000000000000000000000000000000010000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................CGAATAGCGTTGTGACTG.....................................................................................1813001000010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................GAATAGCGTTGTGACTGA....................................................................................18150061651001000020002000210016020003010000001000011000000000000010100010000000002010000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................GAATAGCGTTGTGACTGAGGTA................................................................................2213000000010100000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................GAATAGCGTTGTGACTGAG...................................................................................1913000000000000000002000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................GAATAGCGTTGTGACTGAGG..................................................................................2011000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AATAGCGTTGTGACTGAGG..................................................................................1911000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AATAGCGTTGTGACTGAGGTA................................................................................2113200000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AATAGCGTTGTGACTGAGGTAA...............................................................................2216120000001110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................ATAGCGTTGTGACTGAGGT.................................................................................1911000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TAGCGTTGTGACTGAGGT.................................................................................1811000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................GTTGTGACTGAGGTAACTGCGC.........................................................................2212000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................TTGTGACTGAGGTAACTGCGCATC......................................................................2411100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................GAGGTAACTGCGCATCGAATCT................................................................2213000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................AGGTAACTGCGCATCGAATCTACTCA...........................................................2611000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................AGGTAACTGCGCATCGAATCTA...............................................................2211000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................GGTAACTGCGCATCGAATCTACT.............................................................231170000000000000000000000000000000000000000000012000000000000000000000000100020000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................GGTAACTGCGCATCGAATCTACTC............................................................2416700002000100100000004010111004000000000000000110000140100000200100010000100100000500200110000000020030001101000000001000000000000000000001000000000000000000000000000000000000000000000000000000
.................................................................GGTAACTGCGCATCGAATC.................................................................1911001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................GGTAACTGCGCATCGAATCTA...............................................................2111000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................GTAACTGCGCATCGAATCTACT.............................................................2214000000001001000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................GTAACTGCGCATCGAATCT................................................................1911000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................TAACTGCGCATCGAATCTACTCAGC.........................................................2517000000000000001000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
...................................................................TAACTGCGCATCGAATCTACT.............................................................2111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...................................................................TAACTGCGCATCGAATCTACTCAGCGGC......................................................2812000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000100000000000000000000000000000000
...................................................................TAACTGCGCATCGAATCTACTC............................................................2211001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................AACTGCGCATCGAATCTACTC............................................................2111000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................AACTGCGCATCGAATCTACTCAGCGGC......................................................2711000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................AACTGCGCATCGAATCTACTCAGCGG.......................................................2614300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.....................................................................ACTGCGCATCGAATCTACTCAGCGGC......................................................2614000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.....................................................................ACTGCGCATCGAATCTACTCAGCGGCG.....................................................2712000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.....................................................................ACTGCGCATCGAATCTACTCAGCGG.......................................................2511100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................TGCGCATCGAATCTACTCAGCGGCGA....................................................2613000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000001000000000000000000000000000000000000
.......................................................................TGCGCATCGAATCTACTCAGCGGCGAG...................................................2713000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................TGCGCATCGAATCTACTCAGCG........................................................2211000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................TGCGCATCGAATCTACTCAGCGGCGAGGC.................................................2911000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................TGCGCATCGAATCTACTCAGCGG.......................................................2312100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................TGCGCATCGAATCTACTCAGCGGCG.....................................................2515000000000000000000000000000000101000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
........................................................................GCGCATCGAATCTACTCAGCGGCG.....................................................2411000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
........................................................................GCGCATCGAATCTACTCAGCGGCGAG...................................................2611000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................CGCATCGAATCTACTCAGC.........................................................1911000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................GCATCGAATCTACTCAGCGGCGAGG..................................................2511000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................CATCGAATCTACTCAGCGGCGAGGC.................................................2513000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................ATCGAATCTACTCAGCGGCGAGG..................................................2312000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................ATCGAATCTACTCAGCGGCGAGGCTA...............................................2612000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TCGAATCTACTCAGCGGCGAGGCTA...............................................2513000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................CGAATCTACTCAGCGGCGAGGCT................................................2311000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................GAATCTACTCAGCGGCGAG...................................................1914000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................ATCTACTCAGCGGCGAGGCTATTCAAG.........................................2711100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TACTCAGCGGCGAGGCTATTCAAG.........................................2412000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................ACTCAGCGGCGAGGCTATTCAAGTAA......................................2611001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................CTCAGCGGCGAGGCTATTCA...........................................2012000000000000000100000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................CTCAGCGGCGAGGCTATTCAA..........................................2114000010000000000000001000000000000000000000000010000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................CTCAGCGGCGAGGCTATTC............................................1911000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................CTCAGCGGCGAGGCTATTCAAG.........................................2217200000000010001000002000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TCAGCGGCGAGGCTATTCAAG.........................................2113120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TCAGCGGCGAGGCTATTCAA..........................................2011000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TCAGCGGCGAGGCTATTCAAGTAA......................................2411100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TCAGCGGCGAGGCTATTCAAGT........................................22121420010010101020000000100000101011000000000000000000000000000000000000000000000000000002000100000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TCAGCGGCGAGGCTATTCAAGTA.......................................2315110010000010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................CAGCGGCGAGGCTATTCAAGTA.......................................22131850211000004011010004000000001000000000000000000000000000000000010000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................CAGCGGCGAGGCTATTCAAGT........................................211402050000020002011000000001000000000000000000000000000100000000010000000000000000000000000100000000000000000000000001100000012000000000000000000000000000000000000000000000000000000000000000000
........................................................................................CAGCGGCGAGGCTATTCAAG.........................................20112500010010000000000010000000000000000000001000000000000001000000000000000000000000000001000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................CAGCGGCGAGGCTATTCAA..........................................1911000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................CAGCGGCGAGGCTATTCAAGTAA......................................23113400000000000000000000000000000000000000000010000040000000000000000000000000000000000010100000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................AGCGGCGAGGCTATTCAAGT........................................20155401240030000000100000200000100000000001000000010060000018000000010000101061200000000110000000000001001000001000000000000021000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................AGCGGCGAGGCTATTCAAGTA.......................................2112221710212560432220233160142210540100240200000010112000000120300000202000010000111001100400010211102051100003102000003200041000001101002000000160000000000000000000000000000010000000000000000000000000
.........................................................................................AGCGGCGAGGCTATTCAAGTAA......................................22112746422176723240241391331010112517031913812020000119500121301110020200140812460102020110003600110099999831010004404627913310046012101423201810100142110310123002022297004030313030000120000000220000000000000000000000000000000000000
.........................................................................................AGCGGCGAGGCTATTCAAG.........................................19113000120000000010010000100000100000000000000000000000000002000000000000000000100000000100200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................AGCGGCGAGGCTATTCAA..........................................1814000010000000000000000001000000000000000001000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................GCGGCGAGGCTATTCAAGTA.......................................2019000000000000000000000000000000000000000001000000000000001000000000000100000000000000000000000000000001000000000050000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................GCGGCGAGGCTATTCAAGT........................................1912000000000000000000000100000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................GCGGCGAGGCTATTCAAGTAA......................................21155200601010000001400041201000010000000100000300000030000000300000010000000000000000000200002040000043001100000000200000000000000000010000000000000000000000000000000000000000000000000000000000
...........................................................................................CGGCGAGGCTATTCAAGTAA......................................2015000000000000000000001000000000000000000000100000000000000000000000000000000000000200000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................GGCGAGGCTATTCAAGTAA......................................1912010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................GGCGAGGCTATTCAAGTA.......................................1811000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................GCGAGGCTATTCAAGTAA......................................1813000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
Antisense strand
                                                                                                                                                     SizeBlastTotalV098 dcr-2[L811fsX] ovaryV065 dcr-2[L811fsX], ovary, AGO1IPV076 ML-DmBG3-C2SRR031696_2152 SRR029633 total small RNAs from hen1 homozygous flies V010 MLDmD20c5V064 ago2[414], ovary, AGO1IPV019 GM2 cellV083 male, one dayV084 female, one dayV082 embryo 14-24hrV097 CS ovaryV089 ago2[414] ovary total RNA  V063 CS,ovary,AGO1IPV081 embryo 2-6hrSRR031703 Total small RNAs from r2d2 homozygous flies V033 CMEW1 Cl.8+ cellV066 r2d2[1], ovary, AGO1IPV090 CS  male total RNA  SRR031692 Total small RNAs from Oregon R V028 CMEW1 Cl.8+ cellSRR031699 Total small RNAs from dcr-2 homozygous flies SRR031693_4 SRR031701 Total small RNAs from r2d2 heterozygous flies V088 r2d2[1] ovary total RNA  SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1 SRR001664 homozygous dcr-2_untreated SRR031697 Total small RNAs from dcr-2 heterozygous flies V009 CMEL1GSM379063 Vasa Heterozygote GSM379060 SpnE Heterozygote SRR014282 Ovary_rep1 wK_P GSM379065 Zuc Heterozygote SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies V001 IR-GSM379057 Krimp Mutant GSM379053 Aub Mutant GSM379052 Aub Heterozygote GSM379056 Krimp Heterozygote SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb SRR001349 heterozygous dcr-2_untreated S24 male body #2V002 IR+SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies GSM379064 Vasa Mutant GSM280083 dcr-2-/- ovaries (18-29nt) SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1 V021 ML-DmD21 cellS29 male head #1GSM280084 loqs-/- ovaries (18-29nt) S28 0-2d pupaeS27 0-1d Pupae (w)GSM379066 Zuc Mutant GSM280085 WT testes (18-24nt) GSM280082 WT ovaries (18-29nt) GSM343287 Drosophila Toll 10b mutant embryos S19 2-4day pupae #1GSM379062 Squ Mutant GSM379061 Squ Heterozygote GSM379050 Armi Heterozygote OSS6 Drosophila OSS cell small RNA libraries, rep2 GSM467730 r2d2 GSM379059 S23 female body #2GSM379051 Armi Mutant SRR001347 ago2 untreated OSS2 Drosophila OSS cell small RNA libraries, rep1 GSM379058 SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies OSS7 Drosophila OSS cell small RNA libraries, rep3 SRR001341 WT_males non-beta-eliminated GSM467729 WT S33 KC-48 #2SRR001339 WT_females non-beta-eliminated SRR001343 dcr-2 non-beta-eliminated S12 6-10h #1 (10)SRR010954 Aub trans-heterozygotes, oxidized S22 female head #1OSS8 Drosophila OSS cell small RNA libraries, rep4 SRR010960 wt, oxidized S9 0-1h #3 (7)SRR001345 ago2 non-beta-eliminated SRR014275 Ovary_rep1 LK_P S35 KC+48 #2V024 kc167 cellS10 2-6h #1 (8)V018 Kc167 cellS17 3rd inster #1S13 6-10h #2 (11)V075 ML-DmBG1-C1S32 s2+48 #2GSM379067 SpnE Mutant S18 3rd inster #2S2 female headS14 0-1hr #1 (A)SRR010953 Aub heterozygotes, oxidized S34 KC+48 #1S31 s2+48 #1S3 male bodySRR001348 ago2 oxidized S16 KC -48 #1S4 female bodySRR032092 mock oxidized SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 SRR001344 dcr-2 beta-eliminated S20 2-4day pupae#2V067 S2-NPV008 S2-DRSCS21 disk #2S7 12-24hr embryoSRR014280 Ovary_rep1 w1118_P SRR029030 dcr-2 knockdown SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1 SRR001337 WT_females beta-eliminated SRR029028 untreated (mock) V011 Sg4SRR010955 Aub IP in Ago3 heterozygotes GSM467731 loq S1 male headGSM180328 adult heads (female heads, male heads) SRR032095 AGO1 IP dcr2 knockdown SRR014273 Ovary_rep1_Har_P S25 1st instar #1S30 s2-48 #2SRR001338 IR non-beta-eliminated GSM280087 S2cell (AGO2IP) GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day V020 S2R+ cellSRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb V026 1182-4H cellS5 imaginal discS8 S2-48,+48, KC-48, +48 mixSRR032094 ago2 knockdown SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1 GSM180334 larvae: 1st instar and 3rd instars GSM280088 S2cell (AGO1IP) S11 2-6h #2 (9)GSM180333 late embryo (12-24) GSM180332 mid embryo (6-10) SRR010959 Ago3 IP in heterozygotes SRR029032 r2d2 knockdown V025 S2R+ cellSRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb GSM180329 adult bodies (female bodies, male bodies) GSM280086 WT ovaries (AGO2IP) GSM379054 Flam Heterozygote GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006) GSM246084 D. melanogaster adult male heads 454 GSM180331 early embryo (2-6) SRR014277 Ovary_rep1 NA_P S15 S2 -48 #1SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb S26 1st instar #2SRR029031 loqs-ORF knockdown SRR010952 Ago3 trans-heterozygotes, oxidized SRR010956 Piwi IP in Ago3 heterozygotes SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb SRR010951 Ago3 heterozygotes, oxidized GSM180335 imaginal discs SRR023402 total RNA extracted from NLS-P19 cells GSM180330 very early embryo (0-1) GSM424741 S2 pKF63 transiently transfected SRR032096 AGO2 IP dcr2 knockdownSRR001346 ago2 beta-eliminated GSM239051 S2 cells, beta-eliminated GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries SRR010957 Aub IP in Ago3 trans-heterozygotes SRR023197 RNA Library from S2 control cells SRR029033 lacZ knockdown GSM424740 S2 pKF63 stably transfected SRR023400 total RNA extracted from P19 cells SRR023407 RNA bound by NLS-P19 protein GSM180337 tissue culture cells (S2 only) SRR001340 IR beta-eliminated GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries SRR001342 WT_males beta-eliminated GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries GSM239050 fly heads, beta-eliminated GSM379055 Flam Mutant SRR029029 dcr-1 knockdown GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0 SRR010958 Piwi IP in Ago3 trans-heterozygotes SRR023399 RNA bound by P19 protein GSM239052 S2 cells, non beta-eliminated GSM239041 fly heads, non beta-eliminated GSM424739 S2 parental SRR032093 ago1 knockdown
........................ACACACCTGAAATTACCCAT.........................................................................................................2011000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................TGAGGTAACTGCGCATCGAAT..................................................................2111000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................GGTAACTGCGCATCGAATCTACTCA...........................................................2511000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000
..........................................................................................GCGGCGAGGCTATTCAAGTAAGGTTA.................................2612000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000
.............................................................................................................................AGCGACTTTACGACCGGAA.....1911000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000