Page generated on Fri Oct 15 12:01:34 2010

dme-mir-987



dme-mir-987

View dme-mir-987 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-987	143	194072	1	35	193156	91	781		10	21	193156	781

ATACGAGGAGCGGAAGACGAACAATGTTGGACTGTGTTTAAAGTAAATAGTCTGGATTGATGAAAGTTGCATTCGAGAATTCATCAACAGGCATTTACTTCAACTGCAGTTTGAACAAAATGCAACAGGAAAATAACGAGTGC
........................(((..((((((..((.((((((((.(((((...(((((((..((.......))..))))))).))))))))))))).))..))))))..).))..........................-29.70
.........((....).)......(((..((((((..((.((((((((.(((((...(((((((..((.......))..))))))).))))))))))))).))..))))))..).))....(((...(........)...)))-32.90
Sense strand

	Size	Blast	Total	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR031696_2152	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR029633 total small RNAs from hen1 homozygous flies	V083 male, one day	S29 male head #1	SRR031697 Total small RNAs from dcr-2 heterozygous flies	V090 CS  male total RNA	SRR031692 Total small RNAs from Oregon R	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR001345 ago2 non-beta-eliminated	S22 female head #1	V082 embryo 14-24hr	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	V084 female, one day	V067 S2-NP	SRR001349 heterozygous dcr-2_untreated	SRR001338 IR non-beta-eliminated	SRR001664 homozygous dcr-2_untreated	SRR001347 ago2 untreated	SRR029028 untreated (mock)	SRR032095 AGO1 IP dcr2 knockdown	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	GSM280088 S2cell (AGO1IP)	S2 female head	SRR001344 dcr-2 beta-eliminated	SRR029031 loqs-ORF knockdown	SRR001343 dcr-2 non-beta-eliminated	GSM180328 adult heads (female heads, male heads)	SRR029030 dcr-2 knockdown	V081 embryo 2-6hr	SRR001348 ago2 oxidized	SRR029033 lacZ knockdown	V008 S2-DRSC	SRR029032 r2d2 knockdown	S1 male head	V001 IR-	S24 male body #2	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR032094 ago2 knockdown	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	S9 0-1h #3 (7)	SRR032093 ago1 knockdown	V076 ML-DmBG3-C2	V002 IR+	S28 0-2d pupae	S21 disk #2	S5 imaginal disc	S32 s2+48 #2	SRR031693_4	GSM246084 D. melanogaster adult male heads 454	S23 female body #2	V089 ago2[414] ovary total RNA	V064 ago2[414], ovary, AGO1IP	SRR001346 ago2 beta-eliminated	SRR001337 WT_females beta-eliminated	SRR032092 mock oxidized	V098 dcr-2[L811fsX] ovary	GSM239041 fly heads, non beta-eliminated	GSM467729 WT	V097 CS ovary	S19 2-4day pupae #1	S27 0-1d Pupae (w)	S35 KC+48 #2	V088 r2d2[1] ovary total RNA	SRR029029 dcr-1 knockdown	V063 CS,ovary,AGO1IP	S4 female body	S34 KC+48 #1	GSM280087 S2cell (AGO2IP)	V065 dcr-2[L811fsX], ovary, AGO1IP	S7 12-24hr embryo	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	S10 2-6h #1 (8)	V018 Kc167 cell	S25 1st instar #1	GSM239052 S2 cells, non beta-eliminated	S26 1st instar #2	SRR014280 Ovary_rep1 w1118_P	GSM379057 Krimp Mutant	GSM180335 imaginal discs	SRR001340 IR beta-eliminated	S3 male body	GSM467730 r2d2	GSM343287 Drosophila Toll 10b mutant embryos	V024 kc167 cell	GSM379061 Squ Heterozygote	V066 r2d2[1], ovary, AGO1IP	S33 KC-48 #2	V011 Sg4	GSM379062 Squ Mutant	S18 3rd inster #2	V021 ML-DmD21 cell	S17 3rd inster #1	GSM467731 loq	GSM379065 Zuc Heterozygote	S20 2-4day pupae#2	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	V028 CMEW1 Cl.8+ cell	GSM379051 Armi Mutant	GSM379059	V033 CMEW1 Cl.8+ cell	GSM379066 Zuc Mutant	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM280084 loqs-/- ovaries (18-29nt)	SRR001342 WT_males beta-eliminated	GSM379067 SpnE Mutant	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	V075 ML-DmBG1-C1	GSM180333 late embryo (12-24)	GSM379054 Flam Heterozygote	SRR014282 Ovary_rep1 wK_P	V019 GM2 cell	GSM379063 Vasa Heterozygote	SRR032096 AGO2 IP dcr2 knockdown	GSM379060 SpnE Heterozygote	GSM379058	S13 6-10h #2 (11)	GSM379050 Armi Heterozygote	V026 1182-4H cell	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	GSM180329 adult bodies (female bodies, male bodies)	SRR014273 Ovary_rep1_Har_P	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	GSM379064 Vasa Mutant	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379056 Krimp Heterozygote	V010 MLDmD20c5	SRR014275 Ovary_rep1 LK_P	GSM379055 Flam Mutant	GSM180334 larvae: 1st instar and 3rd instars	S30 s2-48 #2	GSM280083 dcr-2-/- ovaries (18-29nt)	V009 CMEL1	S16 KC -48 #1	GSM379052 Aub Heterozygote	GSM379053 Aub Mutant	SRR014277 Ovary_rep1 NA_P	S8 S2-48,+48, KC-48, +48 mix	GSM280085 WT testes (18-24nt)	S12 6-10h #1 (10)	GSM239051 S2 cells, beta-eliminated	SRR023400 total RNA extracted from P19 cells	GSM239050 fly heads, beta-eliminated	SRR010959 Ago3 IP in heterozygotes	GSM180331 early embryo (2-6)	V025 S2R+ cell	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR010954 Aub trans-heterozygotes, oxidized	V020 S2R+ cell	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	GSM180330 very early embryo (0-1)	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR010951 Ago3 heterozygotes, oxidized	GSM280086 WT ovaries (AGO2IP)	S11 2-6h #2 (9)	GSM180332 mid embryo (6-10)	S14 0-1hr #1 (A)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	S31 s2+48 #1	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023197 RNA Library from S2 control cells	SRR010956 Piwi IP in Ago3 heterozygotes	GSM424740 S2 pKF63 stably transfected	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM424741 S2 pKF63 transiently transfected	S15 S2 -48 #1	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	GSM280082 WT ovaries (18-29nt)	SRR023399 RNA bound by P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	GSM424739 S2 parental	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR010953 Aub heterozygotes, oxidized
.TACGAGGAGCGGAAGACGAACAATGT....................................................................................................................	26	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............GAAGACGAACAATGTTGGACTGTGTT.........................................................................................................	26	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................ACGAACAATGTTGGACTGTGTT.........................................................................................................	22	1	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GAACAATGTTGGACTGTGTT.........................................................................................................	20	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................AACAATGTTGGACTGTGTT.........................................................................................................	19	1	26	1	0	2	1	0	0	0	0	2	0	1	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	13	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................ACAATGTTGGACTGTGTT.........................................................................................................	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................ACAATGTTGGACTGTGTTT........................................................................................................	19	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................TAAAGTAAATAGTCTGGATTGA...................................................................................	22	1	27529	4606	2867	3069	2204	622	316	1462	1541	1454	1295	1319	81	80	953	213	556	684	406	490	470	177	299	210	210	250	57	324	102	304	12	97	9	46	27	93	28	21	7	18	30	47	41	35	3	31	50	1	1	3	5	0	9	7	1	4	17	25	32	41	8	7	21	5	6	0	1	5	4	14	0	0	8	9	0	5	4	1	0	1	0	2	9	0	2	3	4	0	2	0	2	0	2	1	1	2	0	1	4	0	0	0	2	1	2	2	0	0	3	2	0	1	1	0	0	2	1	1	3	2	1	0	1	2	0	0	1	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................TAAAGTAAATAGTCTGGATTGATGA................................................................................	25	1	19684	2230	1069	1166	1225	1194	1681	912	1023	859	683	304	824	1798	128	478	621	141	163	148	158	71	245	101	101	0	209	66	107	79	118	64	299	27	56	63	16	59	161	47	6	11	23	10	48	18	12	89	46	58	49	31	6	13	16	52	13	6	4	0	23	1	11	18	21	29	5	33	0	2	7	9	3	7	23	8	4	9	19	9	12	18	7	3	3	2	6	3	5	7	6	14	6	7	5	4	3	3	1	5	2	11	6	5	4	3	7	8	3	2	3	3	1	6	1	0	3	7	0	2	5	6	4	1	1	2	1	1	1	1	0	1	2	0	0	3	0	2	2	0	0	1	0	1	0	2	0	0	0	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................TAAAGTAAATAGTCTGGATTGATGAAAG.............................................................................	28	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................TAAAGTAAATAGTCTGGATTG....................................................................................	21	1	8433	1433	731	1186	970	155	91	544	362	342	510	46	30	13	141	52	84	363	253	242	169	31	42	31	31	81	14	14	22	75	3	14	2	26	22	12	24	4	1	2	15	31	18	24	0	9	17	0	2	2	0	0	6	2	1	2	1	0	3	13	1	20	31	0	0	0	4	1	8	2	1	0	2	2	0	1	1	0	0	2	0	0	1	0	2	0	14	9	1	0	1	0	1	0	0	1	0	8	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................TAAAGTAAATAGTCTGGATTGATGAAAGT............................................................................	29	1	6	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.................................................................................CATCAACAGGCATTTACTTC..........................................	20	1	4	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................CATCAACAGGCATTTACTTCAA........................................	22	1	128	14	5	13	18	1	6	8	0	16	3	0	3	2	0	0	1	2	2	1	3	0	1	0	0	0	3	1	0	1	0	12	2	0	0	0	0	1	2	2	0	0	0	1	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................ATCAACAGGCATTTACTTCAA........................................	21	1	159	34	15	14	21	0	7	13	4	11	7	0	8	0	0	0	1	1	2	0	2	0	1	0	0	1	5	0	0	0	1	4	1	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................ATCAACAGGCATTTACTTC..........................................	19	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................ATCAACAGGCATTTACTTCAAC.......................................	22	1	59	10	0	0	1	0	16	6	0	3	3	0	6	0	2	0	0	0	0	0	1	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................ATCAACAGGCATTTACTTCAACT......................................	23	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................ATCAACAGGCATTTACTTCA.........................................	20	1	160	20	35	12	14	0	30	12	0	5	7	2	4	0	2	0	1	0	0	0	3	0	0	1	1	1	2	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................TCAACAGGCATTTACTTCAA........................................	20	1	60	6	5	4	2	0	7	1	0	6	5	0	3	0	0	0	0	5	0	0	0	0	0	0	0	1	0	0	0	0	1	9	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................TCAACAGGCATTTACTTC..........................................	18	1	3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................TCAACAGGCATTTACTTCAACT......................................	22	1	14	1	0	0	3	0	5	1	0	1	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................TCAACAGGCATTTACTTCAAC.......................................	21	1	9	0	0	0	0	0	0	1	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................................................CAACAGGCATTTACTTCAA........................................	19	1	2	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................AACAGGCATTTACTTCAAC.......................................	19	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR031696_2152	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR029633 total small RNAs from hen1 homozygous flies	V083 male, one day	S29 male head #1	SRR031697 Total small RNAs from dcr-2 heterozygous flies	V090 CS  male total RNA	SRR031692 Total small RNAs from Oregon R	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR001345 ago2 non-beta-eliminated	S22 female head #1	V082 embryo 14-24hr	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	V084 female, one day	V067 S2-NP	SRR001349 heterozygous dcr-2_untreated	SRR001338 IR non-beta-eliminated	SRR001664 homozygous dcr-2_untreated	SRR001347 ago2 untreated	SRR029028 untreated (mock)	SRR032095 AGO1 IP dcr2 knockdown	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	GSM280088 S2cell (AGO1IP)	S2 female head	SRR001344 dcr-2 beta-eliminated	SRR029031 loqs-ORF knockdown	SRR001343 dcr-2 non-beta-eliminated	GSM180328 adult heads (female heads, male heads)	SRR029030 dcr-2 knockdown	V081 embryo 2-6hr	SRR001348 ago2 oxidized	SRR029033 lacZ knockdown	V008 S2-DRSC	SRR029032 r2d2 knockdown	S1 male head	V001 IR-	S24 male body #2	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR032094 ago2 knockdown	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	S9 0-1h #3 (7)	SRR032093 ago1 knockdown	V076 ML-DmBG3-C2	V002 IR+	S28 0-2d pupae	S21 disk #2	S5 imaginal disc	S32 s2+48 #2	SRR031693_4	GSM246084 D. melanogaster adult male heads 454	S23 female body #2	V089 ago2[414] ovary total RNA	V064 ago2[414], ovary, AGO1IP	SRR001346 ago2 beta-eliminated	SRR001337 WT_females beta-eliminated	SRR032092 mock oxidized	V098 dcr-2[L811fsX] ovary	GSM239041 fly heads, non beta-eliminated	GSM467729 WT	V097 CS ovary	S19 2-4day pupae #1	S27 0-1d Pupae (w)	S35 KC+48 #2	V088 r2d2[1] ovary total RNA	SRR029029 dcr-1 knockdown	V063 CS,ovary,AGO1IP	S4 female body	S34 KC+48 #1	GSM280087 S2cell (AGO2IP)	V065 dcr-2[L811fsX], ovary, AGO1IP	S7 12-24hr embryo	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	S10 2-6h #1 (8)	V018 Kc167 cell	S25 1st instar #1	GSM239052 S2 cells, non beta-eliminated	S26 1st instar #2	SRR014280 Ovary_rep1 w1118_P	GSM379057 Krimp Mutant	GSM180335 imaginal discs	SRR001340 IR beta-eliminated	S3 male body	GSM467730 r2d2	GSM343287 Drosophila Toll 10b mutant embryos	V024 kc167 cell	GSM379061 Squ Heterozygote	V066 r2d2[1], ovary, AGO1IP	S33 KC-48 #2	V011 Sg4	GSM379062 Squ Mutant	S18 3rd inster #2	V021 ML-DmD21 cell	S17 3rd inster #1	GSM467731 loq	GSM379065 Zuc Heterozygote	S20 2-4day pupae#2	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	V028 CMEW1 Cl.8+ cell	GSM379051 Armi Mutant	GSM379059	V033 CMEW1 Cl.8+ cell	GSM379066 Zuc Mutant	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM280084 loqs-/- ovaries (18-29nt)	SRR001342 WT_males beta-eliminated	GSM379067 SpnE Mutant	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	V075 ML-DmBG1-C1	GSM180333 late embryo (12-24)	GSM379054 Flam Heterozygote	SRR014282 Ovary_rep1 wK_P	V019 GM2 cell	GSM379063 Vasa Heterozygote	SRR032096 AGO2 IP dcr2 knockdown	GSM379060 SpnE Heterozygote	GSM379058	S13 6-10h #2 (11)	GSM379050 Armi Heterozygote	V026 1182-4H cell	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	GSM180329 adult bodies (female bodies, male bodies)	SRR014273 Ovary_rep1_Har_P	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	GSM379064 Vasa Mutant	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379056 Krimp Heterozygote	V010 MLDmD20c5	SRR014275 Ovary_rep1 LK_P	GSM379055 Flam Mutant	GSM180334 larvae: 1st instar and 3rd instars	S30 s2-48 #2	GSM280083 dcr-2-/- ovaries (18-29nt)	V009 CMEL1	S16 KC -48 #1	GSM379052 Aub Heterozygote	GSM379053 Aub Mutant	SRR014277 Ovary_rep1 NA_P	S8 S2-48,+48, KC-48, +48 mix	GSM280085 WT testes (18-24nt)	S12 6-10h #1 (10)	GSM239051 S2 cells, beta-eliminated	SRR023400 total RNA extracted from P19 cells	GSM239050 fly heads, beta-eliminated	SRR010959 Ago3 IP in heterozygotes	GSM180331 early embryo (2-6)	V025 S2R+ cell	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR010954 Aub trans-heterozygotes, oxidized	V020 S2R+ cell	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	GSM180330 very early embryo (0-1)	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR010951 Ago3 heterozygotes, oxidized	GSM280086 WT ovaries (AGO2IP)	S11 2-6h #2 (9)	GSM180332 mid embryo (6-10)	S14 0-1hr #1 (A)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	S31 s2+48 #1	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023197 RNA Library from S2 control cells	SRR010956 Piwi IP in Ago3 heterozygotes	GSM424740 S2 pKF63 stably transfected	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR010960 wt, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	OSS2 Drosophila OSS cell small RNA libraries, rep1	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM424741 S2 pKF63 transiently transfected	S15 S2 -48 #1	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	GSM280082 WT ovaries (18-29nt)	SRR023399 RNA bound by P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	GSM424739 S2 parental	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR010953 Aub heterozygotes, oxidized
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