Page generated on Fri Oct 15 12:01:30 2010

dme-mir-988



dme-mir-988

View dme-mir-988 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-988	148	383213	3	721	57180		325288	4	23	14	325288	57180

AACTGGTTTCAAAAGAACATAGTTGACGGCGGTACCGGGCATTTTGGGTGTGTGATTTGTAGCAAAGTGATATGTATTTGATCATCCCCTTGTTGCAAACCTCACGCCAAAGATGATCTGCGAAATACACAGTGGTATGGAAAAAAAA
............................((((.......((((((.((((((.(.((((((((((.(((((.........)))))....)))))))))).).)))))).))))))..))))...........................-31.10
(((((((((.....)))).))))).....(.(((((...((((((.((((((.(.((((((((((.(((((.........)))))....)))))))))).).)))))).))))))..(((.(.....).))).))))).)........-39.00
Sense strand

	Size	Blast	Total	S32 s2+48 #2	S33 KC-48 #2	S30 s2-48 #2	S31 s2+48 #1	S16 KC -48 #1	S15 S2 -48 #1	S29 male head #1	S35 KC+48 #2	S34 KC+48 #1	SRR031696_2152	GSM280085 WT testes (18-24nt)	S8 S2-48,+48, KC-48, +48 mix	S13 6-10h #2 (11)	V097 CS ovary	V065 dcr-2[L811fsX], ovary, AGO1IP	V081 embryo 2-6hr	S28 0-2d pupae	S22 female head #1	V033 CMEW1 Cl.8+ cell	S9 0-1h #3 (7)	S24 male body #2	S19 2-4day pupae #1	S23 female body #2	V063 CS,ovary,AGO1IP	V028 CMEW1 Cl.8+ cell	V011 Sg4	V010 MLDmD20c5	S12 6-10h #1 (10)	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	V009 CMEL1	S14 0-1hr #1 (A)	V076 ML-DmBG3-C2	V098 dcr-2[L811fsX] ovary	V075 ML-DmBG1-C1	S10 2-6h #1 (8)	S21 disk #2	V024 kc167 cell	S27 0-1d Pupae (w)	OSS6 Drosophila OSS cell small RNA libraries, rep2	V066 r2d2[1], ovary, AGO1IP	OSS2 Drosophila OSS cell small RNA libraries, rep1	S2 female head	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR029633 total small RNAs from hen1 homozygous flies	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR031693_4	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	V021 ML-DmD21 cell	S5 imaginal disc	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V064 ago2[414], ovary, AGO1IP	OSS7 Drosophila OSS cell small RNA libraries, rep3	SRR029030 dcr-2 knockdown	GSM379065 Zuc Heterozygote	V088 r2d2[1] ovary total RNA	GSM379057 Krimp Mutant	V018 Kc167 cell	S11 2-6h #2 (9)	V019 GM2 cell	V008 S2-DRSC	GSM379064 Vasa Mutant	V026 1182-4H cell	SRR014275 Ovary_rep1 LK_P	S17 3rd inster #1	V067 S2-NP	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	SRR023400 total RNA extracted from P19 cells	SRR031692 Total small RNAs from Oregon R	SRR014277 Ovary_rep1 NA_P	SRR029028 untreated (mock)	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	S7 12-24hr embryo	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR023402 total RNA extracted from NLS-P19 cells	S1 male head	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR014280 Ovary_rep1 w1118_P	GSM379056 Krimp Heterozygote	V082 embryo 14-24hr	SRR014282 Ovary_rep1 wK_P	GSM239051 S2 cells, beta-eliminated	V025 S2R+ cell	S4 female body	V020 S2R+ cell	GSM379063 Vasa Heterozygote	GSM379066 Zuc Mutant	GSM467729 WT	V089 ago2[414] ovary total RNA	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379051 Armi Mutant	S3 male body	GSM280087 S2cell (AGO2IP)	SRR031699 Total small RNAs from dcr-2 homozygous flies	V090 CS  male total RNA	GSM379052 Aub Heterozygote	GSM379060 SpnE Heterozygote	SRR029033 lacZ knockdown	GSM379054 Flam Heterozygote	S18 3rd inster #2	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR029031 loqs-ORF knockdown	V001 IR-	GSM379061 Squ Heterozygote	GSM239052 S2 cells, non beta-eliminated	GSM180337 tissue culture cells (S2 only)	V083 male, one day	SRR001338 IR non-beta-eliminated	SRR014273 Ovary_rep1_Har_P	SRR032093 ago1 knockdown	V002 IR+	SRR001349 heterozygous dcr-2_untreated	GSM379058	S20 2-4day pupae#2	GSM379062 Squ Mutant	V084 female, one day	GSM280088 S2cell (AGO1IP)	GSM379050 Armi Heterozygote	SRR032092 mock oxidized	SRR032094 ago2 knockdown	SRR023399 RNA bound by P19 protein	GSM180328 adult heads (female heads, male heads)	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR001347 ago2 untreated	GSM180332 mid embryo (6-10)	SRR029029 dcr-1 knockdown	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	SRR029032 r2d2 knockdown	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001345 ago2 non-beta-eliminated	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	GSM280082 WT ovaries (18-29nt)	GSM180335 imaginal discs	GSM379067 SpnE Mutant	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM180333 late embryo (12-24)	SRR001664 homozygous dcr-2_untreated	GSM343287 Drosophila Toll 10b mutant embryos	SRR032096 AGO2 IP dcr2 knockdown	GSM379053 Aub Mutant	GSM180330 very early embryo (0-1)	GSM424740 S2 pKF63 stably transfected	GSM379055 Flam Mutant	S25 1st instar #1	GSM180331 early embryo (2-6)	SRR010960 wt, oxidized	SRR023197 RNA Library from S2 control cells	GSM467730 r2d2	GSM379059	SRR032095 AGO1 IP dcr2 knockdown	GSM424739 S2 parental	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	S26 1st instar #2	SRR001343 dcr-2 non-beta-eliminated	GSM280084 loqs-/- ovaries (18-29nt)	GSM180329 adult bodies (female bodies, male bodies)	SRR010959 Ago3 IP in heterozygotes	GSM239050 fly heads, beta-eliminated	GSM239041 fly heads, non beta-eliminated	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR001348 ago2 oxidized	SRR010954 Aub trans-heterozygotes, oxidized	GSM180334 larvae: 1st instar and 3rd instars	GSM467731 loq	SRR001344 dcr-2 beta-eliminated	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR010955 Aub IP in Ago3 heterozygotes	SRR010951 Ago3 heterozygotes, oxidized	SRR010953 Aub heterozygotes, oxidized	SRR010956 Piwi IP in Ago3 heterozygotes	SRR001337 WT_females beta-eliminated	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR001340 IR beta-eliminated	GSM280086 WT ovaries (AGO2IP)	GSM246084 D. melanogaster adult male heads 454	SRR001346 ago2 beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM424741 S2 pKF63 transiently transfected
......................TTGACGGCGGTACCGGGCATTTTGGGT...................................................................................................	27	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................ACGGCGGTACCGGGCATTTTGGGT...................................................................................................	24	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CGGCGGTACCGGGCATTTTGGGT...................................................................................................	23	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CGGCGGTACCGGGCATTTTG......................................................................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GCGGTACCGGGCATTTTGGGT...................................................................................................	21	1	20	1	0	0	0	0	0	2	0	0	0	0	0	0	4	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CGGTACCGGGCATTTTGGGT...................................................................................................	20	1	173	1	0	4	2	0	2	0	1	0	0	0	0	0	24	0	21	0	0	0	0	0	2	0	0	2	1	2	0	0	2	0	3	15	1	3	2	0	0	0	0	0	0	0	0	0	0	0	3	0	3	0	0	0	0	0	0	5	2	3	0	0	1	1	2	4	0	3	2	0	0	1	0	2	0	1	0	0	0	1	0	0	0	0	1	0	0	0	2	0	0	0	6	0	0	0	0	0	0	0	0	0	3	0	0	0	2	0	1	0	0	0	1	1	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	24	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GGTACCGGGCATTTTGGGT...................................................................................................	19	1	324	11	1	1	8	1	1	0	1	0	0	0	0	0	55	0	42	0	0	1	0	0	0	1	0	1	7	4	0	0	1	0	6	44	0	0	0	5	0	0	0	0	0	0	1	0	0	0	3	0	3	0	1	0	0	0	1	15	1	13	0	3	4	0	9	2	0	4	3	0	0	1	3	3	1	0	0	0	0	1	0	1	0	1	1	0	4	0	6	0	2	0	11	4	2	0	0	0	2	1	1	0	4	0	0	4	0	1	1	0	0	2	1	2	1	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GGTACCGGGCATTTTGGG....................................................................................................	18	1	4	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GTACCGGGCATTTTGGGT...................................................................................................	18	1	191	8	0	2	3	0	2	0	2	0	0	0	1	1	37	0	32	0	0	3	0	0	0	0	0	2	2	3	0	0	1	0	3	17	0	0	0	5	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	9	0	4	0	0	0	3	2	0	3	0	0	2	0	0	0	0	0	2	0	0	0	0	1	2	0	6	0	0	1	0	4	0	5	0	0	0	0	1	3	0	0	0	1	0	0	0	4	0	1	0	1	0	0	0	0	0	0	2	0	2	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................TACCGGGCATTTTGGGTG..................................................................................................	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................TGGGTGTGTGATTTGTAGCA....................................................................................	20	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................TGGGTGTGTGATTTGTAGCAAA..................................................................................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................TGTGTGATTTGTAGCAAAGT................................................................................	20	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................................................................TTGTTGCAAACCTCACGC.........................................	18	1	28	1	0	3	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	3	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	2	0	0	0	1	0	0	0	2	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	3	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................CAAAGATGATCTGCGAAATACACA.................	24	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................CAAAGATGATCTGCGAAATACACAG................	25	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	S32 s2+48 #2	S33 KC-48 #2	S30 s2-48 #2	S31 s2+48 #1	S16 KC -48 #1	S15 S2 -48 #1	S29 male head #1	S35 KC+48 #2	S34 KC+48 #1	SRR031696_2152	GSM280085 WT testes (18-24nt)	S8 S2-48,+48, KC-48, +48 mix	S13 6-10h #2 (11)	V097 CS ovary	V065 dcr-2[L811fsX], ovary, AGO1IP	V081 embryo 2-6hr	S28 0-2d pupae	S22 female head #1	V033 CMEW1 Cl.8+ cell	S9 0-1h #3 (7)	S24 male body #2	S19 2-4day pupae #1	S23 female body #2	V063 CS,ovary,AGO1IP	V028 CMEW1 Cl.8+ cell	V011 Sg4	V010 MLDmD20c5	S12 6-10h #1 (10)	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	V009 CMEL1	S14 0-1hr #1 (A)	V076 ML-DmBG3-C2	V098 dcr-2[L811fsX] ovary	V075 ML-DmBG1-C1	S10 2-6h #1 (8)	S21 disk #2	V024 kc167 cell	S27 0-1d Pupae (w)	OSS6 Drosophila OSS cell small RNA libraries, rep2	V066 r2d2[1], ovary, AGO1IP	OSS2 Drosophila OSS cell small RNA libraries, rep1	S2 female head	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR029633 total small RNAs from hen1 homozygous flies	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR031693_4	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	V021 ML-DmD21 cell	S5 imaginal disc	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V064 ago2[414], ovary, AGO1IP	OSS7 Drosophila OSS cell small RNA libraries, rep3	SRR029030 dcr-2 knockdown	GSM379065 Zuc Heterozygote	V088 r2d2[1] ovary total RNA	GSM379057 Krimp Mutant	V018 Kc167 cell	S11 2-6h #2 (9)	V019 GM2 cell	V008 S2-DRSC	GSM379064 Vasa Mutant	V026 1182-4H cell	SRR014275 Ovary_rep1 LK_P	S17 3rd inster #1	V067 S2-NP	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	SRR023400 total RNA extracted from P19 cells	SRR031692 Total small RNAs from Oregon R	SRR014277 Ovary_rep1 NA_P	SRR029028 untreated (mock)	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	S7 12-24hr embryo	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	SRR023402 total RNA extracted from NLS-P19 cells	S1 male head	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR014280 Ovary_rep1 w1118_P	GSM379056 Krimp Heterozygote	V082 embryo 14-24hr	SRR014282 Ovary_rep1 wK_P	GSM239051 S2 cells, beta-eliminated	V025 S2R+ cell	S4 female body	V020 S2R+ cell	GSM379063 Vasa Heterozygote	GSM379066 Zuc Mutant	GSM467729 WT	V089 ago2[414] ovary total RNA	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379051 Armi Mutant	S3 male body	GSM280087 S2cell (AGO2IP)	SRR031699 Total small RNAs from dcr-2 homozygous flies	V090 CS  male total RNA	GSM379052 Aub Heterozygote	GSM379060 SpnE Heterozygote	SRR029033 lacZ knockdown	GSM379054 Flam Heterozygote	S18 3rd inster #2	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR029031 loqs-ORF knockdown	V001 IR-	GSM379061 Squ Heterozygote	GSM239052 S2 cells, non beta-eliminated	GSM180337 tissue culture cells (S2 only)	V083 male, one day	SRR001338 IR non-beta-eliminated	SRR014273 Ovary_rep1_Har_P	SRR032093 ago1 knockdown	V002 IR+	SRR001349 heterozygous dcr-2_untreated	GSM379058	S20 2-4day pupae#2	GSM379062 Squ Mutant	V084 female, one day	GSM280088 S2cell (AGO1IP)	GSM379050 Armi Heterozygote	SRR032092 mock oxidized	SRR032094 ago2 knockdown	SRR023399 RNA bound by P19 protein	GSM180328 adult heads (female heads, male heads)	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	SRR001347 ago2 untreated	GSM180332 mid embryo (6-10)	SRR029029 dcr-1 knockdown	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	SRR029032 r2d2 knockdown	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001345 ago2 non-beta-eliminated	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	GSM280082 WT ovaries (18-29nt)	GSM180335 imaginal discs	GSM379067 SpnE Mutant	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM180333 late embryo (12-24)	SRR001664 homozygous dcr-2_untreated	GSM343287 Drosophila Toll 10b mutant embryos	SRR032096 AGO2 IP dcr2 knockdown	GSM379053 Aub Mutant	GSM180330 very early embryo (0-1)	GSM424740 S2 pKF63 stably transfected	GSM379055 Flam Mutant	S25 1st instar #1	GSM180331 early embryo (2-6)	SRR010960 wt, oxidized	SRR023197 RNA Library from S2 control cells	GSM467730 r2d2	GSM379059	SRR032095 AGO1 IP dcr2 knockdown	GSM424739 S2 parental	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	S26 1st instar #2	SRR001343 dcr-2 non-beta-eliminated	GSM280084 loqs-/- ovaries (18-29nt)	GSM180329 adult bodies (female bodies, male bodies)	SRR010959 Ago3 IP in heterozygotes	GSM239050 fly heads, beta-eliminated	GSM239041 fly heads, non beta-eliminated	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR001348 ago2 oxidized	SRR010954 Aub trans-heterozygotes, oxidized	GSM180334 larvae: 1st instar and 3rd instars	GSM467731 loq	SRR001344 dcr-2 beta-eliminated	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR010955 Aub IP in Ago3 heterozygotes	SRR010951 Ago3 heterozygotes, oxidized	SRR010953 Aub heterozygotes, oxidized	SRR010956 Piwi IP in Ago3 heterozygotes	SRR001337 WT_females beta-eliminated	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR001340 IR beta-eliminated	GSM280086 WT ovaries (AGO2IP)	GSM246084 D. melanogaster adult male heads 454	SRR001346 ago2 beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM424741 S2 pKF63 transiently transfected
...........................................................TAGCAAAGTGATATGTATTTG....................................................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................TCCCCTTGTTGCAAACCTCA............................................	20	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................TGATCTGCGAAATACACAGTGGT............	23	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0