Page generated on Fri Oct 15 12:01:08 2010

dme-mir-989



dme-mir-989

View dme-mir-989 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-989	223	9182400	2	2	1817	163	9180309	14	97	99	9180309	1817

TTTTCCAGCATTTTATTTAAGTACAAAGATTTTGGGAATCGGCCACTACCTTGCAGTCACGTGATGAAAAGACACAGGTGACACTGATCCGGATTTGGTAGTTGACAAATCCTCCATGCCGAGATTAGTTTCATTTTGCGTCTTTTGAATTCGAATAGTTCATGTGATGTGACGTAGTGGAACATACCTGAAATTACAAGCAACACGAAGTGAAACGATTATT
...........................(((((..((.((...(((((((.(..((.(((((((((.(((((((.(((((((.((((((((((...(((..(((....)))...)))..))).))))))).))).)))).))))))).)...........))))))))))..).)))))))...)).))..)))))............................-62.40
..........((((((((..((.....(((((..((.((...(((((((.(..((.(((((((((.(((((((.(((((((.((((((((((...(((..(((....)))...)))..))).))))))).))).)))).))))))).)...........))))))))))..).)))))))...)).))..))))).......))...))))))))........-64.40
Sense strand

	Size	Blast	Total	V097 CS ovary	V098 dcr-2[L811fsX] ovary	V088 r2d2[1] ovary total RNA	V089 ago2[414] ovary total RNA	V063 CS,ovary,AGO1IP	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	V064 ago2[414], ovary, AGO1IP	GSM379057 Krimp Mutant	GSM379051 Armi Mutant	SRR014275 Ovary_rep1 LK_P	SRR014277 Ovary_rep1 NA_P	GSM379061 Squ Heterozygote	GSM379065 Zuc Heterozygote	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM379066 Zuc Mutant	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379053 Aub Mutant	GSM379063 Vasa Heterozygote	SRR014280 Ovary_rep1 w1118_P	GSM379050 Armi Heterozygote	V066 r2d2[1], ovary, AGO1IP	GSM379054 Flam Heterozygote	GSM379052 Aub Heterozygote	V084 female, one day	GSM379058	GSM379064 Vasa Mutant	SRR014273 Ovary_rep1_Har_P	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379062 Squ Mutant	GSM379060 SpnE Heterozygote	GSM280082 WT ovaries (18-29nt)	SRR014282 Ovary_rep1 wK_P	GSM379067 SpnE Mutant	GSM379056 Krimp Heterozygote	GSM280083 dcr-2-/- ovaries (18-29nt)	OSS6 Drosophila OSS cell small RNA libraries, rep2	OSS2 Drosophila OSS cell small RNA libraries, rep1	S23 female body #2	GSM379055 Flam Mutant	OSS7 Drosophila OSS cell small RNA libraries, rep3	OSS8 Drosophila OSS cell small RNA libraries, rep4	GSM379059	SRR010959 Ago3 IP in heterozygotes	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM280084 loqs-/- ovaries (18-29nt)	SRR010956 Piwi IP in Ago3 heterozygotes	SRR010955 Aub IP in Ago3 heterozygotes	GSM467729 WT	S4 female body	GSM467731 loq	GSM467730 r2d2	SRR010954 Aub trans-heterozygotes, oxidized	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR010953 Aub heterozygotes, oxidized	V076 ML-DmBG3-C2	SRR032092 mock oxidized	SRR010960 wt, oxidized	V020 S2R+ cell	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	V090 CS  male total RNA	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR032094 ago2 knockdown	S33 KC-48 #2	GSM180329 adult bodies (female bodies, male bodies)	SRR010951 Ago3 heterozygotes, oxidized	V081 embryo 2-6hr	S16 KC -48 #1	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR029032 r2d2 knockdown	V021 ML-DmD21 cell	V083 male, one day	SRR031696_2152	V033 CMEW1 Cl.8+ cell	SRR029029 dcr-1 knockdown	V082 embryo 14-24hr	V009 CMEL1	GSM280087 S2cell (AGO2IP)	S35 KC+48 #2	V067 S2-NP	S24 male body #2	V028 CMEW1 Cl.8+ cell	SRR029033 lacZ knockdown	SRR031697 Total small RNAs from dcr-2 heterozygous flies	V018 Kc167 cell	V001 IR-	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	SRR029030 dcr-2 knockdown	S21 disk #2	GSM280088 S2cell (AGO1IP)	V075 ML-DmBG1-C1	S19 2-4day pupae #1	V026 1182-4H cell	V024 kc167 cell	V019 GM2 cell	V010 MLDmD20c5	GSM424740 S2 pKF63 stably transfected	S34 KC+48 #1	SRR031692 Total small RNAs from Oregon R	S5 imaginal disc	S22 female head #1	V008 S2-DRSC	SRR001347 ago2 untreated	SRR001337 WT_females beta-eliminated	S9 0-1h #3 (7)	S3 male body	SRR032093 ago1 knockdown	SRR001345 ago2 non-beta-eliminated	GSM343287 Drosophila Toll 10b mutant embryos	S28 0-2d pupae	S2 female head	S29 male head #1	S18 3rd inster #2	SRR032095 AGO1 IP dcr2 knockdown	S8 S2-48,+48, KC-48, +48 mix	V025 S2R+ cell	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR029028 untreated (mock)	SRR001344 dcr-2 beta-eliminated	S30 s2-48 #2	V011 Sg4	GSM280085 WT testes (18-24nt)	V002 IR+	SRR032096 AGO2 IP dcr2 knockdown	S20 2-4day pupae#2	S27 0-1d Pupae (w)	SRR029031 loqs-ORF knockdown	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR001343 dcr-2 non-beta-eliminated	SRR001348 ago2 oxidized	S17 3rd inster #1	SRR029633 total small RNAs from hen1 homozygous flies	SRR031699 Total small RNAs from dcr-2 homozygous flies	S32 s2+48 #2	SRR023197 RNA Library from S2 control cells	S15 S2 -48 #1	GSM280086 WT ovaries (AGO2IP)	S11 2-6h #2 (9)	S14 0-1hr #1 (A)	S31 s2+48 #1	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	SRR001664 homozygous dcr-2_untreated	GSM180335 imaginal discs	GSM180328 adult heads (female heads, male heads)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	S13 6-10h #2 (11)	SRR001349 heterozygous dcr-2_untreated	SRR023400 total RNA extracted from P19 cells	S1 male head	SRR001342 WT_males beta-eliminated	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	SRR001338 IR non-beta-eliminated	S26 1st instar #2	GSM180333 late embryo (12-24)	GSM239051 S2 cells, beta-eliminated	GSM180332 mid embryo (6-10)	SRR001341 WT_males non-beta-eliminated	S7 12-24hr embryo	SRR031693_4	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	GSM180337 tissue culture cells (S2 only)	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM180334 larvae: 1st instar and 3rd instars	GSM180331 early embryo (2-6)	S25 1st instar #1	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001339 WT_females non-beta-eliminated	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR023399 RNA bound by P19 protein	GSM239052 S2 cells, non beta-eliminated	S10 2-6h #1 (8)	GSM239041 fly heads, non beta-eliminated	GSM424739 S2 parental	SRR001346 ago2 beta-eliminated	S12 6-10h #1 (10)
....................GTACAAAGATTTTGGGAATC.......................................................................................................................................................................................	20	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CGGCCACTACCTTGCAGTCACGTG................................................................................................................................................................	24	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CGGCCACTACCTTGCAGTCACGTGATGAAA..........................................................................................................................................................	30	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CGGCCACTACCTTGCAGTCA....................................................................................................................................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GGCCACTACCTTGCAGTCA....................................................................................................................................................................	19	1	30	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	1	0	0	0	0	0	0	10	0	4	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GGCCACTACCTTGCAGTCACGT.................................................................................................................................................................	22	1	437	34	26	7	3	51	58	12	30	2	4	2	2	2	5	6	10	8	3	1	3	3	4	28	2	7	0	7	2	2	1	3	8	0	2	0	4	1	10	13	2	3	16	5	0	0	1	0	0	0	17	4	8	7	0	0	7	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GGCCACTACCTTGCAGTCACGTGATG.............................................................................................................................................................	26	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GGCCACTACCTTGCAGTCACGTGATGAAA..........................................................................................................................................................	29	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GGCCACTACCTTGCAGTCACGTGATGA............................................................................................................................................................	27	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GGCCACTACCTTGCAGTCACGTGAT..............................................................................................................................................................	25	1	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	1	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GGCCACTACCTTGCAGTCACGTGATGAA...........................................................................................................................................................	28	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...................................................................................................................................................................GTGATGTGACGTAGTGGA..........................................	18	1	247	72	74	3	14	16	10	4	2	5	0	3	3	2	1	1	0	6	0	0	3	1	2	0	1	0	0	0	2	2	0	0	0	5	0	0	1	0	2	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TGATGTGACGTAGTGGAA.........................................	18	1	308	14	12	4	6	97	15	15	6	3	6	14	7	4	2	5	8	14	1	2	3	5	8	2	5	0	0	1	5	9	4	4	1	5	1	2	1	5	4	0	1	1	3	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TGATGTGACGTAGTGGAAC........................................	19	1	670	38	38	14	11	247	12	44	12	5	18	15	16	8	9	30	12	18	8	1	6	5	6	6	0	8	4	2	11	11	3	1	2	5	5	3	4	6	4	7	4	1	4	2	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TGATGTGACGTAGTGGAACA.......................................	20	1	604	32	30	23	6	139	15	46	5	9	14	17	14	9	9	27	15	16	6	6	8	12	6	7	3	6	9	7	6	17	14	4	8	6	5	4	2	9	3	0	0	2	2	1	1	0	10	0	1	1	1	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TGATGTGACGTAGTGGAACAT......................................	21	1	16	0	0	1	0	4	1	0	0	0	0	1	0	0	1	1	0	0	0	0	1	0	0	1	0	0	0	1	1	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................GATGTGACGTAGTGGAACAT......................................	20	1	6	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................GATGTGACGTAGTGGAAC........................................	18	1	481	45	37	13	5	150	9	30	12	3	4	33	29	10	1	13	1	8	3	1	6	0	1	6	1	0	1	2	0	8	0	0	1	14	2	2	1	7	2	3	0	3	2	5	0	6	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................GATGTGACGTAGTGGAACA.......................................	19	1	408	39	36	9	2	124	6	29	3	2	1	20	22	8	3	16	7	6	3	1	2	0	2	11	6	1	3	1	2	6	2	0	1	8	5	2	5	7	2	1	0	0	0	1	0	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................ATGTGACGTAGTGGAACA.......................................	18	1	384	41	32	10	10	120	5	18	6	1	3	9	16	23	1	9	9	12	2	3	8	0	2	2	4	1	5	2	1	3	0	0	3	3	0	3	3	6	1	1	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................ATGTGACGTAGTGGAACAT......................................	19	1	4	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TGTGACGTAGTGGAACAT......................................	18	1	60	6	8	6	4	4	0	5	1	0	0	2	0	0	0	3	3	5	0	1	2	1	0	0	1	1	0	0	1	0	1	2	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................GTGACGTAGTGGAACATA.....................................	18	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TACCTGAAATTACAAGCAACACGAAG.............	26	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TACCTGAAATTACAAGCAACACGAA..............	25	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TACCTGAAATTACAAGCAACACGAAGT............	27	1	7	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TACCTGAAATTACAAGCAACACGAAGTGA..........	29	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	V097 CS ovary	V098 dcr-2[L811fsX] ovary	V088 r2d2[1] ovary total RNA	V089 ago2[414] ovary total RNA	V063 CS,ovary,AGO1IP	V065 dcr-2[L811fsX], ovary, AGO1IP	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	V064 ago2[414], ovary, AGO1IP	GSM379057 Krimp Mutant	GSM379051 Armi Mutant	SRR014275 Ovary_rep1 LK_P	SRR014277 Ovary_rep1 NA_P	GSM379061 Squ Heterozygote	GSM379065 Zuc Heterozygote	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	GSM379066 Zuc Mutant	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379053 Aub Mutant	GSM379063 Vasa Heterozygote	SRR014280 Ovary_rep1 w1118_P	GSM379050 Armi Heterozygote	V066 r2d2[1], ovary, AGO1IP	GSM379054 Flam Heterozygote	GSM379052 Aub Heterozygote	V084 female, one day	GSM379058	GSM379064 Vasa Mutant	SRR014273 Ovary_rep1_Har_P	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379062 Squ Mutant	GSM379060 SpnE Heterozygote	GSM280082 WT ovaries (18-29nt)	SRR014282 Ovary_rep1 wK_P	GSM379067 SpnE Mutant	GSM379056 Krimp Heterozygote	GSM280083 dcr-2-/- ovaries (18-29nt)	OSS6 Drosophila OSS cell small RNA libraries, rep2	OSS2 Drosophila OSS cell small RNA libraries, rep1	S23 female body #2	GSM379055 Flam Mutant	OSS7 Drosophila OSS cell small RNA libraries, rep3	OSS8 Drosophila OSS cell small RNA libraries, rep4	GSM379059	SRR010959 Ago3 IP in heterozygotes	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM280084 loqs-/- ovaries (18-29nt)	SRR010956 Piwi IP in Ago3 heterozygotes	SRR010955 Aub IP in Ago3 heterozygotes	GSM467729 WT	S4 female body	GSM467731 loq	GSM467730 r2d2	SRR010954 Aub trans-heterozygotes, oxidized	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR010953 Aub heterozygotes, oxidized	V076 ML-DmBG3-C2	SRR032092 mock oxidized	SRR010960 wt, oxidized	V020 S2R+ cell	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	V090 CS  male total RNA	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR032094 ago2 knockdown	S33 KC-48 #2	GSM180329 adult bodies (female bodies, male bodies)	SRR010951 Ago3 heterozygotes, oxidized	V081 embryo 2-6hr	S16 KC -48 #1	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR029032 r2d2 knockdown	V021 ML-DmD21 cell	V083 male, one day	SRR031696_2152	V033 CMEW1 Cl.8+ cell	SRR029029 dcr-1 knockdown	V082 embryo 14-24hr	V009 CMEL1	GSM280087 S2cell (AGO2IP)	S35 KC+48 #2	V067 S2-NP	S24 male body #2	V028 CMEW1 Cl.8+ cell	SRR029033 lacZ knockdown	SRR031697 Total small RNAs from dcr-2 heterozygous flies	V018 Kc167 cell	V001 IR-	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	SRR029030 dcr-2 knockdown	S21 disk #2	GSM280088 S2cell (AGO1IP)	V075 ML-DmBG1-C1	S19 2-4day pupae #1	V026 1182-4H cell	V024 kc167 cell	V019 GM2 cell	V010 MLDmD20c5	GSM424740 S2 pKF63 stably transfected	S34 KC+48 #1	SRR031692 Total small RNAs from Oregon R	S5 imaginal disc	S22 female head #1	V008 S2-DRSC	SRR001347 ago2 untreated	SRR001337 WT_females beta-eliminated	S9 0-1h #3 (7)	S3 male body	SRR032093 ago1 knockdown	SRR001345 ago2 non-beta-eliminated	GSM343287 Drosophila Toll 10b mutant embryos	S28 0-2d pupae	S2 female head	S29 male head #1	S18 3rd inster #2	SRR032095 AGO1 IP dcr2 knockdown	S8 S2-48,+48, KC-48, +48 mix	V025 S2R+ cell	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR029028 untreated (mock)	SRR001344 dcr-2 beta-eliminated	S30 s2-48 #2	V011 Sg4	GSM280085 WT testes (18-24nt)	V002 IR+	SRR032096 AGO2 IP dcr2 knockdown	S20 2-4day pupae#2	S27 0-1d Pupae (w)	SRR029031 loqs-ORF knockdown	SRR031703 Total small RNAs from r2d2 homozygous flies	SRR001343 dcr-2 non-beta-eliminated	SRR001348 ago2 oxidized	S17 3rd inster #1	SRR029633 total small RNAs from hen1 homozygous flies	SRR031699 Total small RNAs from dcr-2 homozygous flies	S32 s2+48 #2	SRR023197 RNA Library from S2 control cells	S15 S2 -48 #1	GSM280086 WT ovaries (AGO2IP)	S11 2-6h #2 (9)	S14 0-1hr #1 (A)	S31 s2+48 #1	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	SRR001664 homozygous dcr-2_untreated	GSM180335 imaginal discs	GSM180328 adult heads (female heads, male heads)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	S13 6-10h #2 (11)	SRR001349 heterozygous dcr-2_untreated	SRR023400 total RNA extracted from P19 cells	S1 male head	SRR001342 WT_males beta-eliminated	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	SRR001338 IR non-beta-eliminated	S26 1st instar #2	GSM180333 late embryo (12-24)	GSM239051 S2 cells, beta-eliminated	GSM180332 mid embryo (6-10)	SRR001341 WT_males non-beta-eliminated	S7 12-24hr embryo	SRR031693_4	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	GSM180337 tissue culture cells (S2 only)	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM180334 larvae: 1st instar and 3rd instars	GSM180331 early embryo (2-6)	S25 1st instar #1	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001339 WT_females non-beta-eliminated	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR023399 RNA bound by P19 protein	GSM239052 S2 cells, non beta-eliminated	S10 2-6h #1 (8)	GSM239041 fly heads, non beta-eliminated	GSM424739 S2 parental	SRR001346 ago2 beta-eliminated	S12 6-10h #1 (10)
..........................................................................................................................GATTAGTTTCATTTTGCGTCT................................................................................	21	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................ATGTGATGTGACGTAGTG............................................	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0