Page generated on Fri Oct 15 12:01:16 2010

dme-mir-994



dme-mir-994

View dme-mir-994 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-994	140	2383564	1		2255069	158	128231		107	24	2255069	128231

GAACTTCGATCGCGTCCTGAATTTATATCGAGTTATCTAAGGAAATAGTAGCCGTGATTTTACCCAAGAATTTTTCACATATCACAGTTGCTGTTTCTTTTAGATAGCTCTTTTGTAAACAGCCTAGATCCGAATGCGAG
.............................(((((((((((((((((((((((.(((((......................))))).))))))))))).))))))))))))..............................-33.25
.....(((.(((.((((((..((((((..(((((((((((((((((((((((.(((((......................))))).))))))))))).))))))))))))...)))))))))....))).)))...))).-42.75
Sense strand

	Size	Blast	Total	V097 CS ovary	V098 dcr-2[L811fsX] ovary	V088 r2d2[1] ovary total RNA	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	V065 dcr-2[L811fsX], ovary, AGO1IP	V089 ago2[414] ovary total RNA	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	V066 r2d2[1], ovary, AGO1IP	V064 ago2[414], ovary, AGO1IP	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V063 CS,ovary,AGO1IP	SRR014280 Ovary_rep1 w1118_P	SRR014275 Ovary_rep1 LK_P	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR014277 Ovary_rep1 NA_P	SRR014282 Ovary_rep1 wK_P	SRR014273 Ovary_rep1_Har_P	GSM379066 Zuc Mutant	GSM379064 Vasa Mutant	GSM379060 SpnE Heterozygote	GSM379062 Squ Mutant	GSM379065 Zuc Heterozygote	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR010959 Ago3 IP in heterozygotes	GSM379058	S23 female body #2	GSM379056 Krimp Heterozygote	GSM379054 Flam Heterozygote	GSM379063 Vasa Heterozygote	GSM379050 Armi Heterozygote	GSM379052 Aub Heterozygote	GSM280082 WT ovaries (18-29nt)	GSM379051 Armi Mutant	GSM379067 SpnE Mutant	SRR010955 Aub IP in Ago3 heterozygotes	SRR010956 Piwi IP in Ago3 heterozygotes	GSM379061 Squ Heterozygote	GSM379053 Aub Mutant	SRR010958 Piwi IP in Ago3 trans-heterozygotes	S4 female body	GSM379057 Krimp Mutant	SRR010960 wt, oxidized	V084 female, one day	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR010954 Aub trans-heterozygotes, oxidized	SRR010953 Aub heterozygotes, oxidized	GSM467729 WT	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR010951 Ago3 heterozygotes, oxidized	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	GSM467730 r2d2	GSM280084 loqs-/- ovaries (18-29nt)	GSM379059	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	GSM379055 Flam Mutant	GSM180329 adult bodies (female bodies, male bodies)	GSM467731 loq	V067 S2-NP	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR031696_2152	SRR032092 mock oxidized	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR029028 untreated (mock)	OSS2 Drosophila OSS cell small RNA libraries, rep1	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR032094 ago2 knockdown	OSS7 Drosophila OSS cell small RNA libraries, rep3	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR029032 r2d2 knockdown	GSM280087 S2cell (AGO2IP)	S33 KC-48 #2	SRR029030 dcr-2 knockdown	SRR029029 dcr-1 knockdown	S32 s2+48 #2	SRR032093 ago1 knockdown	V026 1182-4H cell	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	SRR029033 lacZ knockdown	SRR031692 Total small RNAs from Oregon R	V024 kc167 cell	V081 embryo 2-6hr	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM280088 S2cell (AGO1IP)	S35 KC+48 #2	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	S24 male body #2	SRR032095 AGO1 IP dcr2 knockdown	V018 Kc167 cell	SRR029031 loqs-ORF knockdown	V090 CS  male total RNA	S31 s2+48 #1	S16 KC -48 #1	S30 s2-48 #2	GSM424739 S2 parental	V082 embryo 14-24hr	GSM280085 WT testes (18-24nt)	GSM280086 WT ovaries (AGO2IP)	V076 ML-DmBG3-C2	S8 S2-48,+48, KC-48, +48 mix	S19 2-4day pupae #1	S3 male body	SRR029633 total small RNAs from hen1 homozygous flies	V033 CMEW1 Cl.8+ cell	V009 CMEL1	S34 KC+48 #1	S21 disk #2	S29 male head #1	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR032096 AGO2 IP dcr2 knockdown	V021 ML-DmD21 cell	V075 ML-DmBG1-C1	S22 female head #1	SRR031701 Total small RNAs from r2d2 heterozygous flies	S14 0-1hr #1 (A)	V008 S2-DRSC	S9 0-1h #3 (7)	SRR031703 Total small RNAs from r2d2 homozygous flies	S2 female head	V019 GM2 cell	S7 12-24hr embryo	S13 6-10h #2 (11)	SRR001337 WT_females beta-eliminated	SRR001345 ago2 non-beta-eliminated	S15 S2 -48 #1	SRR031699 Total small RNAs from dcr-2 homozygous flies	S28 0-2d pupae	V010 MLDmD20c5	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	V028 CMEW1 Cl.8+ cell	V001 IR-	V083 male, one day	S10 2-6h #1 (8)	SRR001347 ago2 untreated	V002 IR+	SRR001343 dcr-2 non-beta-eliminated	S5 imaginal disc	SRR001344 dcr-2 beta-eliminated	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	V025 S2R+ cell	SRR001338 IR non-beta-eliminated	S17 3rd inster #1	SRR001341 WT_males non-beta-eliminated	SRR031693_4	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR031697 Total small RNAs from dcr-2 heterozygous flies	GSM239050 fly heads, beta-eliminated	GSM180334 larvae: 1st instar and 3rd instars	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	V011 Sg4	S20 2-4day pupae#2	S27 0-1d Pupae (w)	S26 1st instar #2	S11 2-6h #2 (9)	GSM180333 late embryo (12-24)	GSM239051 S2 cells, beta-eliminated	GSM180332 mid embryo (6-10)	GSM180335 imaginal discs	GSM180328 adult heads (female heads, male heads)	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023197 RNA Library from S2 control cells	SRR001349 heterozygous dcr-2_untreated	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	V020 S2R+ cell	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	S18 3rd inster #2	S1 male head	SRR001342 WT_males beta-eliminated	GSM246084 D. melanogaster adult male heads 454	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM180331 early embryo (2-6)	S25 1st instar #1	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001664 homozygous dcr-2_untreated	GSM343287 Drosophila Toll 10b mutant embryos	SRR023399 RNA bound by P19 protein	GSM239052 S2 cells, non beta-eliminated	GSM239041 fly heads, non beta-eliminated	SRR001346 ago2 beta-eliminated	S12 6-10h #1 (10)
.........................TATCGAGTTATCTAAGGAAATA.............................................................................................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................TTATCTAAGGAAATAGTAGCCG......................................................................................	22	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TATCTAAGGAAATAGTAGCCG......................................................................................	21	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TATCTAAGGAAATAGTAGCCGTGAT..................................................................................	25	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ATCTAAGGAAATAGTAGCCGTG....................................................................................	22	1	17	2	2	0	0	1	1	4	1	0	4	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ATCTAAGGAAATAGTAGCCGTGATT.................................................................................	25	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ATCTAAGGAAATAGTAGCCGTGA...................................................................................	23	1	5	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ATCTAAGGAAATAGTAGCCGTGAT..................................................................................	24	1	9	3	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TCTAAGGAAATAGTAGCCGTG....................................................................................	21	1	7754	1294	1006	279	501	648	391	303	370	615	174	378	148	182	103	140	60	170	79	91	63	64	59	40	19	80	7	33	65	49	72	51	30	27	12	7	2	7	30	4	2	12	5	3	12	4	4	3	3	3	3	1	10	3	5	3	1	2	1	4	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	0	0	1	0	0	5	0	0	0	0	2	4	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TCTAAGGAAATAGTAGCC.......................................................................................	18	1	312	3	1	2	5	4	1	4	13	19	0	4	0	2	0	0	0	2	0	1	0	2	1	14	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	3	0	0	129	97	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TCTAAGGAAATAGTAGCCG......................................................................................	19	1	47	6	3	2	1	2	1	0	1	2	0	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	11	9	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................AGTTGCTGTTTCTTTTAGATA..................................	21	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................AGTTGCTGTTTCTTTTAG.....................................	18	1	35	2	4	2	2	3	1	4	1	0	0	7	0	1	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	2	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................AGTTGCTGTTTCTTTTAGA....................................	19	1	38	2	0	1	0	1	0	2	0	0	1	4	7	0	1	1	1	2	0	5	1	0	1	0	0	2	1	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................AGTTGCTGTTTCTTTTAGAT...................................	20	1	98	1	6	4	3	8	2	6	4	3	5	4	7	3	4	0	4	0	7	1	3	3	1	4	2	4	0	3	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................GTTGCTGTTTCTTTTAGATA..................................	20	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................GTTGCTGTTTCTTTTAGAT...................................	19	1	132	6	7	11	5	12	2	16	2	0	0	3	5	9	10	4	2	1	4	3	5	2	1	12	0	0	0	0	0	2	0	0	4	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................GTTGCTGTTTCTTTTAGA....................................	18	1	27	2	0	0	2	1	1	1	0	0	0	0	9	1	1	1	0	0	0	0	0	0	0	3	0	1	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................TTGCTGTTTCTTTTAGAT...................................	18	1	20	0	1	1	3	1	1	2	1	0	0	0	0	2	0	0	0	0	2	0	1	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................CCTAGATCCGAATGCGAG	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	V097 CS ovary	V098 dcr-2[L811fsX] ovary	V088 r2d2[1] ovary total RNA	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	V065 dcr-2[L811fsX], ovary, AGO1IP	V089 ago2[414] ovary total RNA	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	V066 r2d2[1], ovary, AGO1IP	V064 ago2[414], ovary, AGO1IP	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V063 CS,ovary,AGO1IP	SRR014280 Ovary_rep1 w1118_P	SRR014275 Ovary_rep1 LK_P	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR014277 Ovary_rep1 NA_P	SRR014282 Ovary_rep1 wK_P	SRR014273 Ovary_rep1_Har_P	GSM379066 Zuc Mutant	GSM379064 Vasa Mutant	GSM379060 SpnE Heterozygote	GSM379062 Squ Mutant	GSM379065 Zuc Heterozygote	GSM280083 dcr-2-/- ovaries (18-29nt)	SRR010959 Ago3 IP in heterozygotes	GSM379058	S23 female body #2	GSM379056 Krimp Heterozygote	GSM379054 Flam Heterozygote	GSM379063 Vasa Heterozygote	GSM379050 Armi Heterozygote	GSM379052 Aub Heterozygote	GSM280082 WT ovaries (18-29nt)	GSM379051 Armi Mutant	GSM379067 SpnE Mutant	SRR010955 Aub IP in Ago3 heterozygotes	SRR010956 Piwi IP in Ago3 heterozygotes	GSM379061 Squ Heterozygote	GSM379053 Aub Mutant	SRR010958 Piwi IP in Ago3 trans-heterozygotes	S4 female body	GSM379057 Krimp Mutant	SRR010960 wt, oxidized	V084 female, one day	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	SRR010954 Aub trans-heterozygotes, oxidized	SRR010953 Aub heterozygotes, oxidized	GSM467729 WT	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR010951 Ago3 heterozygotes, oxidized	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	GSM467730 r2d2	GSM280084 loqs-/- ovaries (18-29nt)	GSM379059	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	GSM379055 Flam Mutant	GSM180329 adult bodies (female bodies, male bodies)	GSM467731 loq	V067 S2-NP	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR031696_2152	SRR032092 mock oxidized	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	SRR029028 untreated (mock)	OSS2 Drosophila OSS cell small RNA libraries, rep1	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR032094 ago2 knockdown	OSS7 Drosophila OSS cell small RNA libraries, rep3	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR029032 r2d2 knockdown	GSM280087 S2cell (AGO2IP)	S33 KC-48 #2	SRR029030 dcr-2 knockdown	SRR029029 dcr-1 knockdown	S32 s2+48 #2	SRR032093 ago1 knockdown	V026 1182-4H cell	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	SRR029033 lacZ knockdown	SRR031692 Total small RNAs from Oregon R	V024 kc167 cell	V081 embryo 2-6hr	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM280088 S2cell (AGO1IP)	S35 KC+48 #2	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	S24 male body #2	SRR032095 AGO1 IP dcr2 knockdown	V018 Kc167 cell	SRR029031 loqs-ORF knockdown	V090 CS  male total RNA	S31 s2+48 #1	S16 KC -48 #1	S30 s2-48 #2	GSM424739 S2 parental	V082 embryo 14-24hr	GSM280085 WT testes (18-24nt)	GSM280086 WT ovaries (AGO2IP)	V076 ML-DmBG3-C2	S8 S2-48,+48, KC-48, +48 mix	S19 2-4day pupae #1	S3 male body	SRR029633 total small RNAs from hen1 homozygous flies	V033 CMEW1 Cl.8+ cell	V009 CMEL1	S34 KC+48 #1	S21 disk #2	S29 male head #1	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR032096 AGO2 IP dcr2 knockdown	V021 ML-DmD21 cell	V075 ML-DmBG1-C1	S22 female head #1	SRR031701 Total small RNAs from r2d2 heterozygous flies	S14 0-1hr #1 (A)	V008 S2-DRSC	S9 0-1h #3 (7)	SRR031703 Total small RNAs from r2d2 homozygous flies	S2 female head	V019 GM2 cell	S7 12-24hr embryo	S13 6-10h #2 (11)	SRR001337 WT_females beta-eliminated	SRR001345 ago2 non-beta-eliminated	S15 S2 -48 #1	SRR031699 Total small RNAs from dcr-2 homozygous flies	S28 0-2d pupae	V010 MLDmD20c5	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	V028 CMEW1 Cl.8+ cell	V001 IR-	V083 male, one day	S10 2-6h #1 (8)	SRR001347 ago2 untreated	V002 IR+	SRR001343 dcr-2 non-beta-eliminated	S5 imaginal disc	SRR001344 dcr-2 beta-eliminated	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	V025 S2R+ cell	SRR001338 IR non-beta-eliminated	S17 3rd inster #1	SRR001341 WT_males non-beta-eliminated	SRR031693_4	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR031697 Total small RNAs from dcr-2 heterozygous flies	GSM239050 fly heads, beta-eliminated	GSM180334 larvae: 1st instar and 3rd instars	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	V011 Sg4	S20 2-4day pupae#2	S27 0-1d Pupae (w)	S26 1st instar #2	S11 2-6h #2 (9)	GSM180333 late embryo (12-24)	GSM239051 S2 cells, beta-eliminated	GSM180332 mid embryo (6-10)	GSM180335 imaginal discs	GSM180328 adult heads (female heads, male heads)	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023197 RNA Library from S2 control cells	SRR001349 heterozygous dcr-2_untreated	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	V020 S2R+ cell	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	S18 3rd inster #2	S1 male head	SRR001342 WT_males beta-eliminated	GSM246084 D. melanogaster adult male heads 454	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM180331 early embryo (2-6)	S25 1st instar #1	GSM180330 very early embryo (0-1)	GSM424741 S2 pKF63 transiently transfected	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001664 homozygous dcr-2_untreated	GSM343287 Drosophila Toll 10b mutant embryos	SRR023399 RNA bound by P19 protein	GSM239052 S2 cells, non beta-eliminated	GSM239041 fly heads, non beta-eliminated	SRR001346 ago2 beta-eliminated	S12 6-10h #1 (10)
.............................................TAGTAGCCGTGATTTTACCCA..........................................................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0