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dme-mir-995



dme-mir-995

View dme-mir-995 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-995	139	705720		35	38363	1	667284	5	32	16	667284	38363

CATATTATCCTTGACGAATGTCATCCACCTGCACCCCGCAGCCCGAATTATGTGGGAGCTGCGCCGTTTCCGTAATCCGTAGCACCACATGATTCGGCTTCGTGGTACAGGATATCATCGGTTTTTGCTAGCAAACGGG
...........................((((.(((.((.((((.(((((((((((..((((((..(((.....))).)))))).))))))))))))))).)).))).))))............................-44.00
...........((((....)))).((.((((.(((.((.((((.(((((((((((..((((((..(((.....))).)))))).))))))))))))))).)).))).))))............((((....)))).)).-48.60
Sense strand

	Size	Blast	Total	V098 dcr-2[L811fsX] ovary	V097 CS ovary	V076 ML-DmBG3-C2	V081 embryo 2-6hr	V064 ago2[414], ovary, AGO1IP	V088 r2d2[1] ovary total RNA	V065 dcr-2[L811fsX], ovary, AGO1IP	V066 r2d2[1], ovary, AGO1IP	V089 ago2[414] ovary total RNA	V063 CS,ovary,AGO1IP	S33 KC-48 #2	S32 s2+48 #2	SRR032095 AGO1 IP dcr2 knockdown	V011 Sg4	V024 kc167 cell	V033 CMEW1 Cl.8+ cell	V067 S2-NP	SRR029028 untreated (mock)	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V028 CMEW1 Cl.8+ cell	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	OSS6 Drosophila OSS cell small RNA libraries, rep2	OSS2 Drosophila OSS cell small RNA libraries, rep1	S31 s2+48 #1	V009 CMEL1	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	S30 s2-48 #2	SRR014275 Ovary_rep1 LK_P	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM379064 Vasa Mutant	GSM280088 S2cell (AGO1IP)	V025 S2R+ cell	V026 1182-4H cell	OSS7 Drosophila OSS cell small RNA libraries, rep3	V008 S2-DRSC	SRR014280 Ovary_rep1 w1118_P	GSM379065 Zuc Heterozygote	SRR029030 dcr-2 knockdown	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	GSM379063 Vasa Heterozygote	V018 Kc167 cell	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR029633 total small RNAs from hen1 homozygous flies	SRR032093 ago1 knockdown	GSM379057 Krimp Mutant	GSM379056 Krimp Heterozygote	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR014273 Ovary_rep1_Har_P	V082 embryo 14-24hr	S13 6-10h #2 (11)	V010 MLDmD20c5	GSM379054 Flam Heterozygote	SRR014277 Ovary_rep1 NA_P	S15 S2 -48 #1	S16 KC -48 #1	GSM379052 Aub Heterozygote	S10 2-6h #1 (8)	V020 S2R+ cell	GSM280083 dcr-2-/- ovaries (18-29nt)	V019 GM2 cell	GSM379066 Zuc Mutant	V021 ML-DmD21 cell	SRR014282 Ovary_rep1 wK_P	S14 0-1hr #1 (A)	GSM379060 SpnE Heterozygote	S12 6-10h #1 (10)	SRR032094 ago2 knockdown	GSM379051 Armi Mutant	GSM379050 Armi Heterozygote	SRR029033 lacZ knockdown	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR032092 mock oxidized	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	V002 IR+	GSM379062 Squ Mutant	V075 ML-DmBG1-C1	SRR029032 r2d2 knockdown	SRR031696_2152	GSM379053 Aub Mutant	SRR029031 loqs-ORF knockdown	V001 IR-	GSM343287 Drosophila Toll 10b mutant embryos	S34 KC+48 #1	S9 0-1h #3 (7)	S29 male head #1	S35 KC+48 #2	GSM280082 WT ovaries (18-29nt)	GSM379058	SRR029029 dcr-1 knockdown	SRR001338 IR non-beta-eliminated	SRR031692 Total small RNAs from Oregon R	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	S21 disk #2	V084 female, one day	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR031703 Total small RNAs from r2d2 homozygous flies	S19 2-4day pupae #1	S23 female body #2	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR031693_4	S22 female head #1	SRR031697 Total small RNAs from dcr-2 heterozygous flies	GSM280087 S2cell (AGO2IP)	GSM379061 Squ Heterozygote	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S8 S2-48,+48, KC-48, +48 mix	S11 2-6h #2 (9)	V090 CS  male total RNA	V083 male, one day	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	S28 0-2d pupae	S5 imaginal disc	SRR001664 homozygous dcr-2_untreated	GSM467729 WT	GSM379067 SpnE Mutant	SRR032096 AGO2 IP dcr2 knockdown	SRR001349 heterozygous dcr-2_untreated	GSM379059	S27 0-1d Pupae (w)	GSM424739 S2 parental	SRR001347 ago2 untreated	GSM467730 r2d2	GSM239051 S2 cells, beta-eliminated	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR001345 ago2 non-beta-eliminated	S2 female head	S7 12-24hr embryo	GSM379055 Flam Mutant	SRR001343 dcr-2 non-beta-eliminated	S24 male body #2	GSM180331 early embryo (2-6)	S4 female body	GSM239052 S2 cells, non beta-eliminated	S17 3rd inster #1	GSM424740 S2 pKF63 stably transfected	GSM180337 tissue culture cells (S2 only)	GSM280085 WT testes (18-24nt)	SRR010959 Ago3 IP in heterozygotes	GSM180332 mid embryo (6-10)	S1 male head	GSM180330 very early embryo (0-1)	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	GSM180335 imaginal discs	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM467731 loq	SRR001344 dcr-2 beta-eliminated	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	GSM280084 loqs-/- ovaries (18-29nt)	GSM239041 fly heads, non beta-eliminated	SRR010954 Aub trans-heterozygotes, oxidized	GSM180328 adult heads (female heads, male heads)	S18 3rd inster #2	SRR010953 Aub heterozygotes, oxidized	GSM180333 late embryo (12-24)	GSM424741 S2 pKF63 transiently transfected	S20 2-4day pupae#2	SRR010956 Piwi IP in Ago3 heterozygotes	GSM239050 fly heads, beta-eliminated	SRR023400 total RNA extracted from P19 cells	SRR001348 ago2 oxidized	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR023399 RNA bound by P19 protein	S3 male body	SRR010955 Aub IP in Ago3 heterozygotes	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM180334 larvae: 1st instar and 3rd instars	SRR010960 wt, oxidized	GSM180329 adult bodies (female bodies, male bodies)	S25 1st instar #1	GSM280086 WT ovaries (AGO2IP)	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	SRR023197 RNA Library from S2 control cells	SRR001337 WT_females beta-eliminated	S26 1st instar #2	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	SRR001346 ago2 beta-eliminated	SRR001340 IR beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM246084 D. melanogaster adult male heads 454	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries
.........CTTGACGAATGTCATCCACCTG............................................................................................................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TCATCCACCTGCACCCCGCA...................................................................................................	20	1	4	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CATCCACCTGCACCCCGCAG..................................................................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CATCCACCTGCACCCCGCA...................................................................................................	19	1	23	0	0	0	1	0	0	0	0	0	0	0	4	0	1	0	0	0	0	0	0	0	0	0	2	0	0	3	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ATCCACCTGCACCCCGCA...................................................................................................	18	1	6	0	0	0	1	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................AGCCCGAATTATGTGGGAGCTG..............................................................................	22	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................AGCCCGAATTATGTGGGAGCTGC.............................................................................	23	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................AGCCCGAATTATGTGGGAGCTGCG............................................................................	24	1	11	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GCCCGAATTATGTGGGAGCT...............................................................................	20	1	461	4	3	1	0	2	1	0	0	1	3	9	33	1	0	1	1	1	2	2	0	5	1	1	7	1	5	8	3	0	2	1	0	0	0	0	0	2	0	1	0	0	0	3	3	1	3	0	4	1	1	1	2	1	2	3	2	1	3	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	2	0	0	0	2	0	0	0	313	1	0	0	3	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GCCCGAATTATGTGGGAG.................................................................................	18	1	22	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	1	1	0	1	0	0	3	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GCCCGAATTATGTGGGAGCTGCGC...........................................................................	24	1	63	4	9	2	13	0	0	0	0	2	0	0	4	0	0	0	0	0	0	0	0	2	0	0	0	0	3	0	0	0	1	0	0	0	0	1	3	0	8	0	0	2	0	0	0	0	0	0	0	1	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GCCCGAATTATGTGGGAGCTGCGCCGTT.......................................................................	28	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GCCCGAATTATGTGGGAGCTGCG............................................................................	23	1	21760	1118	2627	397	3102	691	174	344	411	315	425	203	451	8	193	427	669	341	152	175	753	192	39	52	245	387	202	319	222	87	60	18	228	107	28	408	142	51	150	255	11	269	11	31	53	38	35	371	28	139	149	269	209	30	233	106	72	25	546	175	11	82	48	82	89	60	19	330	13	41	26	50	150	9	1	46	9	193	49	30	13	108	72	2	41	69	72	33	3	30	32	11	16	88	41	58	11	13	50	35	6	0	31	17	0	39	2	22	137	19	32	45	44	31	7	1	11	0	5	4	12	38	3	1	0	4	12	6	1	29	3	5	23	9	0	3	0	4	0	3	14	2	2	2	2	1	3	0	0	0	1	0	0	2	2	0	1	0	2	2	0	1	0	0	1	0	1	1	0	0	1	2	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0
........................................GCCCGAATTATGTGGGAGCTG..............................................................................	21	1	2853	171	192	15	79	192	40	130	78	50	134	35	42	11	8	20	20	24	12	34	9	92	8	6	26	12	131	38	78	55	11	8	7	3	3	5	23	20	8	49	12	18	48	1	2	13	11	52	1	26	8	19	18	32	44	6	6	22	36	6	7	2	29	6	13	12	12	6	0	10	21	4	21	0	0	3	7	12	0	16	8	8	7	188	3	16	0	9	2	10	0	1	0	76	2	5	0	1	2	5	1	0	2	2	0	6	0	3	2	1	2	5	0	0	0	3	9	0	1	3	0	0	0	4	0	3	0	0	0	10	0	1	2	1	0	0	0	1	0	3	1	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GCCCGAATTATGTGGGAGCTGCGCCG.........................................................................	26	1	6	1	1	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GCCCGAATTATGTGGGAGC................................................................................	19	1	75	0	0	0	0	0	0	0	0	0	0	9	8	1	0	1	1	0	0	0	0	0	0	4	1	0	1	7	1	0	1	0	0	0	1	0	0	1	0	2	1	0	0	0	0	0	0	0	0	1	0	2	0	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	12	1	0	0	0	0	1	0	0	0	2	0	0	0	0	0	1	0	0	1	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................GCCCGAATTATGTGGGAGCTGC.............................................................................	22	1	9101	421	580	41	167	360	187	250	205	148	248	219	241	36	132	131	100	64	9	137	70	275	12	13	145	147	244	109	94	264	31	31	79	26	4	153	132	68	13	157	25	298	142	2	3	43	59	154	8	84	13	69	195	96	109	69	56	81	78	81	8	28	107	77	100	87	92	44	6	43	60	0	196	0	0	9	13	42	6	5	37	10	10	0	23	33	14	20	7	87	0	0	0	269	12	2	1	1	5	18	6	0	8	1	1	24	0	19	12	10	0	18	11	13	0	3	28	1	1	2	0	9	0	2	0	0	0	1	0	19	0	2	3	2	0	6	0	2	0	1	2	1	2	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	3	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GCCCGAATTATGTGGGAGCTGCGCC..........................................................................	25	1	21	3	4	0	4	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GCCCGAATTATGTGGGAGCTGCGCCGT........................................................................	27	1	4	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................CCCGAATTATGTGGGAGCTGCG............................................................................	22	1	2980	74	134	83	316	147	9	27	32	49	51	75	103	0	21	22	41	20	22	18	86	14	8	13	54	30	19	51	18	8	8	2	14	23	8	62	1	8	21	14	5	39	3	3	23	9	2	39	11	14	13	74	24	4	15	37	29	3	197	13	0	13	5	11	3	22	1	121	8	11	2	25	12	16	21	4	3	2	0	6	1	7	6	0	37	16	46	22	3	2	0	3	5	18	10	1	5	5	29	14	2	27	6	3	4	3	26	11	17	1	1	8	2	13	1	0	1	0	1	1	6	0	0	0	0	4	1	3	4	1	0	9	9	7	0	3	0	2	2	0	3	0	0	1	1	2	3	0	0	2	0	0	0	0	2	1	0	0	0	1	1	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0
.........................................CCCGAATTATGTGGGAGCTGCGC...........................................................................	23	1	319	22	25	5	59	0	4	2	4	3	3	3	3	0	2	2	0	3	0	0	1	1	0	0	0	3	2	6	3	0	2	0	1	0	1	2	0	1	0	4	2	1	2	0	3	2	1	2	0	2	5	20	1	0	3	4	2	0	8	2	0	0	2	0	3	2	0	47	0	0	2	0	2	0	1	1	0	0	0	0	0	0	1	0	0	0	10	1	0	1	0	0	0	2	0	0	0	0	1	2	0	0	2	1	0	1	0	1	2	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.........................................CCCGAATTATGTGGGAGCTG..............................................................................	20	1	41	0	1	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................CCCGAATTATGTGGGAGC................................................................................	18	1	19	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................CCCGAATTATGTGGGAGCTGCGCCG.........................................................................	25	1	10	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................................................................................................GCTTCGTGGTACAGGATA.........................	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................CGTGGTACAGGATATCATCGGTT................	23	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................CGTGGTACAGGATATCATCGGT.................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................CGTGGTACAGGATATCAT.....................	18	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................GGTTTTTGCTAGCAAACG..	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	V098 dcr-2[L811fsX] ovary	V097 CS ovary	V076 ML-DmBG3-C2	V081 embryo 2-6hr	V064 ago2[414], ovary, AGO1IP	V088 r2d2[1] ovary total RNA	V065 dcr-2[L811fsX], ovary, AGO1IP	V066 r2d2[1], ovary, AGO1IP	V089 ago2[414] ovary total RNA	V063 CS,ovary,AGO1IP	S33 KC-48 #2	S32 s2+48 #2	SRR032095 AGO1 IP dcr2 knockdown	V011 Sg4	V024 kc167 cell	V033 CMEW1 Cl.8+ cell	V067 S2-NP	SRR029028 untreated (mock)	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V028 CMEW1 Cl.8+ cell	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	OSS6 Drosophila OSS cell small RNA libraries, rep2	OSS2 Drosophila OSS cell small RNA libraries, rep1	S31 s2+48 #1	V009 CMEL1	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	S30 s2-48 #2	SRR014275 Ovary_rep1 LK_P	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	GSM379064 Vasa Mutant	GSM280088 S2cell (AGO1IP)	V025 S2R+ cell	V026 1182-4H cell	OSS7 Drosophila OSS cell small RNA libraries, rep3	V008 S2-DRSC	SRR014280 Ovary_rep1 w1118_P	GSM379065 Zuc Heterozygote	SRR029030 dcr-2 knockdown	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	GSM379063 Vasa Heterozygote	V018 Kc167 cell	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR029633 total small RNAs from hen1 homozygous flies	SRR032093 ago1 knockdown	GSM379057 Krimp Mutant	GSM379056 Krimp Heterozygote	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR014273 Ovary_rep1_Har_P	V082 embryo 14-24hr	S13 6-10h #2 (11)	V010 MLDmD20c5	GSM379054 Flam Heterozygote	SRR014277 Ovary_rep1 NA_P	S15 S2 -48 #1	S16 KC -48 #1	GSM379052 Aub Heterozygote	S10 2-6h #1 (8)	V020 S2R+ cell	GSM280083 dcr-2-/- ovaries (18-29nt)	V019 GM2 cell	GSM379066 Zuc Mutant	V021 ML-DmD21 cell	SRR014282 Ovary_rep1 wK_P	S14 0-1hr #1 (A)	GSM379060 SpnE Heterozygote	S12 6-10h #1 (10)	SRR032094 ago2 knockdown	GSM379051 Armi Mutant	GSM379050 Armi Heterozygote	SRR029033 lacZ knockdown	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	SRR032092 mock oxidized	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	V002 IR+	GSM379062 Squ Mutant	V075 ML-DmBG1-C1	SRR029032 r2d2 knockdown	SRR031696_2152	GSM379053 Aub Mutant	SRR029031 loqs-ORF knockdown	V001 IR-	GSM343287 Drosophila Toll 10b mutant embryos	S34 KC+48 #1	S9 0-1h #3 (7)	S29 male head #1	S35 KC+48 #2	GSM280082 WT ovaries (18-29nt)	GSM379058	SRR029029 dcr-1 knockdown	SRR001338 IR non-beta-eliminated	SRR031692 Total small RNAs from Oregon R	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	S21 disk #2	V084 female, one day	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR031703 Total small RNAs from r2d2 homozygous flies	S19 2-4day pupae #1	S23 female body #2	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR031693_4	S22 female head #1	SRR031697 Total small RNAs from dcr-2 heterozygous flies	GSM280087 S2cell (AGO2IP)	GSM379061 Squ Heterozygote	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S8 S2-48,+48, KC-48, +48 mix	S11 2-6h #2 (9)	V090 CS  male total RNA	V083 male, one day	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	S28 0-2d pupae	S5 imaginal disc	SRR001664 homozygous dcr-2_untreated	GSM467729 WT	GSM379067 SpnE Mutant	SRR032096 AGO2 IP dcr2 knockdown	SRR001349 heterozygous dcr-2_untreated	GSM379059	S27 0-1d Pupae (w)	GSM424739 S2 parental	SRR001347 ago2 untreated	GSM467730 r2d2	GSM239051 S2 cells, beta-eliminated	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	SRR001345 ago2 non-beta-eliminated	S2 female head	S7 12-24hr embryo	GSM379055 Flam Mutant	SRR001343 dcr-2 non-beta-eliminated	S24 male body #2	GSM180331 early embryo (2-6)	S4 female body	GSM239052 S2 cells, non beta-eliminated	S17 3rd inster #1	GSM424740 S2 pKF63 stably transfected	GSM180337 tissue culture cells (S2 only)	GSM280085 WT testes (18-24nt)	SRR010959 Ago3 IP in heterozygotes	GSM180332 mid embryo (6-10)	S1 male head	GSM180330 very early embryo (0-1)	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	GSM180335 imaginal discs	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM467731 loq	SRR001344 dcr-2 beta-eliminated	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	GSM280084 loqs-/- ovaries (18-29nt)	GSM239041 fly heads, non beta-eliminated	SRR010954 Aub trans-heterozygotes, oxidized	GSM180328 adult heads (female heads, male heads)	S18 3rd inster #2	SRR010953 Aub heterozygotes, oxidized	GSM180333 late embryo (12-24)	GSM424741 S2 pKF63 transiently transfected	S20 2-4day pupae#2	SRR010956 Piwi IP in Ago3 heterozygotes	GSM239050 fly heads, beta-eliminated	SRR023400 total RNA extracted from P19 cells	SRR001348 ago2 oxidized	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR023399 RNA bound by P19 protein	S3 male body	SRR010955 Aub IP in Ago3 heterozygotes	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM180334 larvae: 1st instar and 3rd instars	SRR010960 wt, oxidized	GSM180329 adult bodies (female bodies, male bodies)	S25 1st instar #1	GSM280086 WT ovaries (AGO2IP)	SRR010958 Piwi IP in Ago3 trans-heterozygotes	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	SRR023197 RNA Library from S2 control cells	SRR001337 WT_females beta-eliminated	S26 1st instar #2	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR023402 total RNA extracted from NLS-P19 cells	SRR001346 ago2 beta-eliminated	SRR001340 IR beta-eliminated	SRR010951 Ago3 heterozygotes, oxidized	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM246084 D. melanogaster adult male heads 454	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries