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dme-mir-999



dme-mir-999

View dme-mir-999 on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-999	154	458939		78	3629	4	455201	1	26	16	455201	3629

GCTGTAGCCGATGAACGGAGAAGAAAGGATGCCGCTCAATTACCCCGACATAGTCATACGGTGAATGTTGTGTATTGGAGACCAATGTTAACTGTAAGACTGTGTCTCGGTGGTTGCCAGCCCAGCCACACAGCCCAGTATCAACTATACGGAT
..........................((.((..(((((((((((..(((((((((.((((((.(((((((.((.......))))))))).)))))).)))))))))..))))))))..))).)).))...........................-40.80
(((((..(((.....)))........((.((..(((((((((((..(((((((((.((((((.(((((((.((.......))))))))).)))))).)))))))))..))))))))..))).)).))..)))))((.((((.....))))))..-51.00
Sense strand

	Size	Blast	Total	SRR029633 total small RNAs from hen1 homozygous flies	SRR031696_2152	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR031692 Total small RNAs from Oregon R	V083 male, one day	V082 embryo 14-24hr	SRR001345 ago2 non-beta-eliminated	SRR031699 Total small RNAs from dcr-2 homozygous flies	V097 CS ovary	V090 CS  male total RNA	V098 dcr-2[L811fsX] ovary	SRR001338 IR non-beta-eliminated	V084 female, one day	SRR001349 heterozygous dcr-2_untreated	SRR031703 Total small RNAs from r2d2 homozygous flies	S29 male head #1	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR001664 homozygous dcr-2_untreated	SRR001347 ago2 untreated	V081 embryo 2-6hr	V089 ago2[414] ovary total RNA	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	V088 r2d2[1] ovary total RNA	SRR001344 dcr-2 beta-eliminated	V018 Kc167 cell	SRR001343 dcr-2 non-beta-eliminated	V076 ML-DmBG3-C2	V064 ago2[414], ovary, AGO1IP	V065 dcr-2[L811fsX], ovary, AGO1IP	V063 CS,ovary,AGO1IP	S22 female head #1	SRR029028 untreated (mock)	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	V066 r2d2[1], ovary, AGO1IP	V021 ML-DmD21 cell	V024 kc167 cell	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V075 ML-DmBG1-C1	V001 IR-	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	V020 S2R+ cell	GSM424740 S2 pKF63 stably transfected	V019 GM2 cell	GSM379065 Zuc Heterozygote	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V010 MLDmD20c5	S2 female head	V002 IR+	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR014280 Ovary_rep1 w1118_P	SRR014275 Ovary_rep1 LK_P	V033 CMEW1 Cl.8+ cell	GSM379057 Krimp Mutant	SRR014277 Ovary_rep1 NA_P	SRR001348 ago2 oxidized	SRR029033 lacZ knockdown	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	V008 S2-DRSC	V009 CMEL1	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379064 Vasa Mutant	V028 CMEW1 Cl.8+ cell	SRR029030 dcr-2 knockdown	V067 S2-NP	SRR029032 r2d2 knockdown	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	S1 male head	OSS6 Drosophila OSS cell small RNA libraries, rep2	OSS2 Drosophila OSS cell small RNA libraries, rep1	SRR014273 Ovary_rep1_Har_P	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	GSM379056 Krimp Heterozygote	SRR032095 AGO1 IP dcr2 knockdown	GSM280088 S2cell (AGO1IP)	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM379063 Vasa Heterozygote	SRR032094 ago2 knockdown	V011 Sg4	OSS8 Drosophila OSS cell small RNA libraries, rep4	V025 S2R+ cell	GSM280085 WT testes (18-24nt)	S24 male body #2	S33 KC-48 #2	V026 1182-4H cell	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	S32 s2+48 #2	GSM379061 Squ Heterozygote	SRR001337 WT_females beta-eliminated	SRR032093 ago1 knockdown	SRR031693_4	SRR014282 Ovary_rep1 wK_P	GSM379051 Armi Mutant	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM379066 Zuc Mutant	GSM379053 Aub Mutant	GSM379060 SpnE Heterozygote	GSM379050 Armi Heterozygote	S21 disk #2	GSM379052 Aub Heterozygote	S16 KC -48 #1	S31 s2+48 #1	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	GSM379058	S28 0-2d pupae	GSM379062 Squ Mutant	SRR029029 dcr-1 knockdown	S5 imaginal disc	GSM343287 Drosophila Toll 10b mutant embryos	GSM180328 adult heads (female heads, male heads)	SRR001346 ago2 beta-eliminated	GSM379054 Flam Heterozygote	S10 2-6h #1 (8)	S9 0-1h #3 (7)	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR029031 loqs-ORF knockdown	GSM246084 D. melanogaster adult male heads 454	S19 2-4day pupae #1	S23 female body #2	S15 S2 -48 #1	S13 6-10h #2 (11)	S35 KC+48 #2	GSM379067 SpnE Mutant	S12 6-10h #1 (10)	SRR023400 total RNA extracted from P19 cells	GSM424739 S2 parental	GSM379059	S30 s2-48 #2	SRR010956 Piwi IP in Ago3 heterozygotes	S27 0-1d Pupae (w)	GSM280087 S2cell (AGO2IP)	GSM280083 dcr-2-/- ovaries (18-29nt)	S7 12-24hr embryo	SRR001340 IR beta-eliminated	S34 KC+48 #1	S14 0-1hr #1 (A)	SRR032092 mock oxidized	GSM379055 Flam Mutant	SRR010955 Aub IP in Ago3 heterozygotes	S3 male body	GSM239052 S2 cells, non beta-eliminated	S8 S2-48,+48, KC-48, +48 mix	GSM239041 fly heads, non beta-eliminated	SRR023197 RNA Library from S2 control cells	GSM280082 WT ovaries (18-29nt)	S4 female body	GSM424741 S2 pKF63 transiently transfected	SRR023399 RNA bound by P19 protein	S17 3rd inster #1	GSM280084 loqs-/- ovaries (18-29nt)	S25 1st instar #1	GSM467729 WT	S18 3rd inster #2	GSM180335 imaginal discs	SRR001342 WT_males beta-eliminated	S26 1st instar #2	S11 2-6h #2 (9)	S20 2-4day pupae#2	GSM467730 r2d2	GSM180331 early embryo (2-6)	GSM180333 late embryo (12-24)	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	SRR023402 total RNA extracted from NLS-P19 cells	GSM467731 loq	GSM180329 adult bodies (female bodies, male bodies)	SRR032096 AGO2 IP dcr2 knockdown	GSM180337 tissue culture cells (S2 only)	GSM239050 fly heads, beta-eliminated	GSM180334 larvae: 1st instar and 3rd instars	GSM180332 mid embryo (6-10)	GSM180330 very early embryo (0-1)	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR010954 Aub trans-heterozygotes, oxidized	SRR010953 Aub heterozygotes, oxidized	GSM239051 S2 cells, beta-eliminated	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR010960 wt, oxidized	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	SRR010959 Ago3 IP in heterozygotes	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM280086 WT ovaries (AGO2IP)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR010951 Ago3 heterozygotes, oxidized
.......................AAAGGATGCCGCTCAATTACCCCG...........................................................................................................	24	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................AAGGATGCCGCTCAATTACCCCG...........................................................................................................	23	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GATGCCGCTCAATTACCCCG...........................................................................................................	20	1	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................ATGCCGCTCAATTACCCCG...........................................................................................................	19	1	43	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TGCCGCTCAATTACCCCG...........................................................................................................	18	1	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................ACATAGTCATACGGTGAATGTTGT...................................................................................	24	1	14	1	0	0	0	1	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................ACATAGTCATACGGTGAATGTTGTGTATTGGAGAC........................................................................	35	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................ACATAGTCATACGGTGAA.........................................................................................	18	1	14	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................ACATAGTCATACGGTGAATGTTGTGTA................................................................................	27	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................ACATAGTCATACGGTGAATGTTG....................................................................................	23	1	303	7	5	11	6	23	24	4	10	14	11	20	1	10	0	7	5	4	0	0	9	4	1	1	3	1	0	0	5	0	0	0	6	1	5	0	2	1	6	4	0	2	2	0	1	1	0	2	3	2	0	0	3	1	3	1	0	0	0	1	5	3	0	11	2	1	0	0	0	0	0	1	0	2	0	0	1	1	0	1	0	1	0	0	0	0	0	4	1	0	2	0	2	2	3	0	1	0	0	0	0	0	0	3	0	1	1	1	0	0	0	1	0	0	0	0	0	0	0	1	0	2	0	3	0	7	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................ACATAGTCATACGGTGAATGTTGTGT.................................................................................	26	1	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...............................................ACATAGTCATACGGTGAAT........................................................................................	19	1	28	3	0	0	4	0	0	0	0	0	0	0	0	0	0	5	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................ACATAGTCATACGGTGAATGT......................................................................................	21	1	321	9	8	3	8	3	12	0	3	14	5	21	2	2	0	13	0	14	2	0	20	11	0	0	6	0	0	0	11	0	1	0	5	0	6	0	1	2	3	2	3	5	3	0	1	1	0	0	1	0	2	0	2	14	1	3	0	8	2	4	1	1	0	13	0	5	0	0	0	2	0	0	0	0	0	2	2	1	4	0	2	2	0	0	0	2	6	3	1	0	0	1	3	0	0	0	1	1	0	0	1	0	1	0	2	0	1	1	0	0	0	0	0	0	0	0	5	11	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................................TAACTGTAAGACTGTGTCT...............................................	19	1	164	16	3	17	3	3	3	1	22	3	1	1	4	1	9	0	0	2	6	10	1	1	0	0	4	1	1	0	1	2	0	0	0	2	0	1	0	0	1	0	0	2	0	0	2	0	0	0	1	1	0	0	1	0	0	0	0	5	0	0	0	0	1	0	0	0	15	0	0	1	1	0	1	0	1	0	2	0	0	0	0	0	0	0	0	1	0	0	1	0	6	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AACTGTAAGACTGTGTCT...............................................	18	1	122	10	15	10	8	2	8	0	9	0	2	1	1	1	0	1	0	5	1	1	2	0	0	0	0	0	0	0	2	2	0	3	0	2	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	2	3	1	1	0	5	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GCCCAGTATCAACTATACG...	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	SRR029633 total small RNAs from hen1 homozygous flies	SRR031696_2152	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR031692 Total small RNAs from Oregon R	V083 male, one day	V082 embryo 14-24hr	SRR001345 ago2 non-beta-eliminated	SRR031699 Total small RNAs from dcr-2 homozygous flies	V097 CS ovary	V090 CS  male total RNA	V098 dcr-2[L811fsX] ovary	SRR001338 IR non-beta-eliminated	V084 female, one day	SRR001349 heterozygous dcr-2_untreated	SRR031703 Total small RNAs from r2d2 homozygous flies	S29 male head #1	SRR031701 Total small RNAs from r2d2 heterozygous flies	SRR001664 homozygous dcr-2_untreated	SRR001347 ago2 untreated	V081 embryo 2-6hr	V089 ago2[414] ovary total RNA	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	V088 r2d2[1] ovary total RNA	SRR001344 dcr-2 beta-eliminated	V018 Kc167 cell	SRR001343 dcr-2 non-beta-eliminated	V076 ML-DmBG3-C2	V064 ago2[414], ovary, AGO1IP	V065 dcr-2[L811fsX], ovary, AGO1IP	V063 CS,ovary,AGO1IP	S22 female head #1	SRR029028 untreated (mock)	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	V066 r2d2[1], ovary, AGO1IP	V021 ML-DmD21 cell	V024 kc167 cell	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	V075 ML-DmBG1-C1	V001 IR-	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	V020 S2R+ cell	GSM424740 S2 pKF63 stably transfected	V019 GM2 cell	GSM379065 Zuc Heterozygote	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	V010 MLDmD20c5	S2 female head	V002 IR+	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	SRR014280 Ovary_rep1 w1118_P	SRR014275 Ovary_rep1 LK_P	V033 CMEW1 Cl.8+ cell	GSM379057 Krimp Mutant	SRR014277 Ovary_rep1 NA_P	SRR001348 ago2 oxidized	SRR029033 lacZ knockdown	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	V008 S2-DRSC	V009 CMEL1	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	GSM379064 Vasa Mutant	V028 CMEW1 Cl.8+ cell	SRR029030 dcr-2 knockdown	V067 S2-NP	SRR029032 r2d2 knockdown	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	S1 male head	OSS6 Drosophila OSS cell small RNA libraries, rep2	OSS2 Drosophila OSS cell small RNA libraries, rep1	SRR014273 Ovary_rep1_Har_P	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	GSM379056 Krimp Heterozygote	SRR032095 AGO1 IP dcr2 knockdown	GSM280088 S2cell (AGO1IP)	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM379063 Vasa Heterozygote	SRR032094 ago2 knockdown	V011 Sg4	OSS8 Drosophila OSS cell small RNA libraries, rep4	V025 S2R+ cell	GSM280085 WT testes (18-24nt)	S24 male body #2	S33 KC-48 #2	V026 1182-4H cell	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	S32 s2+48 #2	GSM379061 Squ Heterozygote	SRR001337 WT_females beta-eliminated	SRR032093 ago1 knockdown	SRR031693_4	SRR014282 Ovary_rep1 wK_P	GSM379051 Armi Mutant	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	GSM379066 Zuc Mutant	GSM379053 Aub Mutant	GSM379060 SpnE Heterozygote	GSM379050 Armi Heterozygote	S21 disk #2	GSM379052 Aub Heterozygote	S16 KC -48 #1	S31 s2+48 #1	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	GSM379058	S28 0-2d pupae	GSM379062 Squ Mutant	SRR029029 dcr-1 knockdown	S5 imaginal disc	GSM343287 Drosophila Toll 10b mutant embryos	GSM180328 adult heads (female heads, male heads)	SRR001346 ago2 beta-eliminated	GSM379054 Flam Heterozygote	S10 2-6h #1 (8)	S9 0-1h #3 (7)	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR029031 loqs-ORF knockdown	GSM246084 D. melanogaster adult male heads 454	S19 2-4day pupae #1	S23 female body #2	S15 S2 -48 #1	S13 6-10h #2 (11)	S35 KC+48 #2	GSM379067 SpnE Mutant	S12 6-10h #1 (10)	SRR023400 total RNA extracted from P19 cells	GSM424739 S2 parental	GSM379059	S30 s2-48 #2	SRR010956 Piwi IP in Ago3 heterozygotes	S27 0-1d Pupae (w)	GSM280087 S2cell (AGO2IP)	GSM280083 dcr-2-/- ovaries (18-29nt)	S7 12-24hr embryo	SRR001340 IR beta-eliminated	S34 KC+48 #1	S14 0-1hr #1 (A)	SRR032092 mock oxidized	GSM379055 Flam Mutant	SRR010955 Aub IP in Ago3 heterozygotes	S3 male body	GSM239052 S2 cells, non beta-eliminated	S8 S2-48,+48, KC-48, +48 mix	GSM239041 fly heads, non beta-eliminated	SRR023197 RNA Library from S2 control cells	GSM280082 WT ovaries (18-29nt)	S4 female body	GSM424741 S2 pKF63 transiently transfected	SRR023399 RNA bound by P19 protein	S17 3rd inster #1	GSM280084 loqs-/- ovaries (18-29nt)	S25 1st instar #1	GSM467729 WT	S18 3rd inster #2	GSM180335 imaginal discs	SRR001342 WT_males beta-eliminated	S26 1st instar #2	S11 2-6h #2 (9)	S20 2-4day pupae#2	GSM467730 r2d2	GSM180331 early embryo (2-6)	GSM180333 late embryo (12-24)	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	SRR023402 total RNA extracted from NLS-P19 cells	GSM467731 loq	GSM180329 adult bodies (female bodies, male bodies)	SRR032096 AGO2 IP dcr2 knockdown	GSM180337 tissue culture cells (S2 only)	GSM239050 fly heads, beta-eliminated	GSM180334 larvae: 1st instar and 3rd instars	GSM180332 mid embryo (6-10)	GSM180330 very early embryo (0-1)	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR010954 Aub trans-heterozygotes, oxidized	SRR010953 Aub heterozygotes, oxidized	GSM239051 S2 cells, beta-eliminated	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR010960 wt, oxidized	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	SRR010959 Ago3 IP in heterozygotes	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM280086 WT ovaries (AGO2IP)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR010951 Ago3 heterozygotes, oxidized