Page generated on Fri Oct 15 12:01:22 2010

dme-mir-9a



dme-mir-9a

View dme-mir-9a on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-9a	127	1066796	1	3	1015280		51485	1	28	17	1015280	51485

ACACAATCGACTCTATATACAGGGTGCTATGTTGTCTTTGGTTATCTAGCTGTATGAGTGATAAATAACGTCATAAAGCTAGCTTACCGAAGTTAATATTAGCGTCTGCCCAGCGAGACAGCCAAAA
.........................(((((((((.(((((((...((((((.(((((((........)).))))).))))))...))))))).))))).))))........................-29.00
.....................(((((((((((((.(((((((...((((((.(((((((........)).))))).))))))...))))))).))))).))))....)))).((......)).....-36.90
Sense strand

	Size	Blast	Total	V082 embryo 14-24hr	V081 embryo 2-6hr	V001 IR-	V090 CS  male total RNA	V002 IR+	SRR031703 Total small RNAs from r2d2 homozygous flies	V083 male, one day	SRR029633 total small RNAs from hen1 homozygous flies	SRR031696_2152	V084 female, one day	SRR031701 Total small RNAs from r2d2 heterozygous flies	S12 6-10h #1 (10)	SRR031692 Total small RNAs from Oregon R	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR031699 Total small RNAs from dcr-2 homozygous flies	S28 0-2d pupae	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	S13 6-10h #2 (11)	S27 0-1d Pupae (w)	SRR001349 heterozygous dcr-2_untreated	SRR001338 IR non-beta-eliminated	SRR001345 ago2 non-beta-eliminated	S29 male head #1	S19 2-4day pupae #1	SRR001664 homozygous dcr-2_untreated	GSM280085 WT testes (18-24nt)	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	S10 2-6h #1 (8)	SRR001347 ago2 untreated	S21 disk #2	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	S24 male body #2	S5 imaginal disc	V098 dcr-2[L811fsX] ovary	S7 12-24hr embryo	S22 female head #1	S9 0-1h #3 (7)	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	S18 3rd inster #2	V097 CS ovary	SRR001343 dcr-2 non-beta-eliminated	S23 female body #2	V089 ago2[414] ovary total RNA	SRR001344 dcr-2 beta-eliminated	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	V088 r2d2[1] ovary total RNA	S17 3rd inster #1	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	S20 2-4day pupae#2	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR001348 ago2 oxidized	S2 female head	S11 2-6h #2 (9)	GSM280084 loqs-/- ovaries (18-29nt)	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	V064 ago2[414], ovary, AGO1IP	SRR031693_4	V063 CS,ovary,AGO1IP	GSM180332 mid embryo (6-10)	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	GSM467729 WT	V065 dcr-2[L811fsX], ovary, AGO1IP	GSM180333 late embryo (12-24)	GSM180335 imaginal discs	GSM343287 Drosophila Toll 10b mutant embryos	V066 r2d2[1], ovary, AGO1IP	S14 0-1hr #1 (A)	GSM467730 r2d2	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	S25 1st instar #1	GSM379065 Zuc Heterozygote	S34 KC+48 #1	GSM379059	S4 female body	S32 s2+48 #2	S1 male head	GSM379057 Krimp Mutant	GSM180328 adult heads (female heads, male heads)	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	S3 male body	GSM180334 larvae: 1st instar and 3rd instars	V008 S2-DRSC	GSM180331 early embryo (2-6)	S35 KC+48 #2	SRR014280 Ovary_rep1 w1118_P	SRR014275 Ovary_rep1 LK_P	S26 1st instar #2	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	S33 KC-48 #2	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379063 Vasa Heterozygote	GSM379061 Squ Heterozygote	SRR032092 mock oxidized	GSM467731 loq	SRR014273 Ovary_rep1_Har_P	SRR001337 WT_females beta-eliminated	GSM379053 Aub Mutant	SRR014277 Ovary_rep1 NA_P	V076 ML-DmBG3-C2	GSM379056 Krimp Heterozygote	GSM379064 Vasa Mutant	GSM379060 SpnE Heterozygote	GSM379066 Zuc Mutant	SRR014282 Ovary_rep1 wK_P	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	S30 s2-48 #2	GSM379051 Armi Mutant	GSM239052 S2 cells, non beta-eliminated	GSM180329 adult bodies (female bodies, male bodies)	GSM379055 Flam Mutant	GSM239041 fly heads, non beta-eliminated	SRR001346 ago2 beta-eliminated	GSM379052 Aub Heterozygote	S31 s2+48 #1	GSM379067 SpnE Mutant	GSM280087 S2cell (AGO2IP)	SRR001340 IR beta-eliminated	GSM379062 Squ Mutant	GSM379050 Armi Heterozygote	GSM379058	GSM280083 dcr-2-/- ovaries (18-29nt)	S16 KC -48 #1	SRR010959 Ago3 IP in heterozygotes	GSM379054 Flam Heterozygote	V011 Sg4	SRR029032 r2d2 knockdown	SRR029033 lacZ knockdown	SRR010954 Aub trans-heterozygotes, oxidized	S15 S2 -48 #1	S8 S2-48,+48, KC-48, +48 mix	GSM180330 very early embryo (0-1)	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM280082 WT ovaries (18-29nt)	SRR032094 ago2 knockdown	GSM239051 S2 cells, beta-eliminated	SRR029029 dcr-1 knockdown	SRR010953 Aub heterozygotes, oxidized	SRR010955 Aub IP in Ago3 heterozygotes	SRR029028 untreated (mock)	SRR001342 WT_males beta-eliminated	SRR029030 dcr-2 knockdown	GSM246084 D. melanogaster adult male heads 454	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR010956 Piwi IP in Ago3 heterozygotes	GSM239050 fly heads, beta-eliminated	V009 CMEL1	SRR010960 wt, oxidized	V024 kc167 cell	GSM280088 S2cell (AGO1IP)	SRR023402 total RNA extracted from NLS-P19 cells	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	V033 CMEW1 Cl.8+ cell	OSS8 Drosophila OSS cell small RNA libraries, rep4	V020 S2R+ cell	V026 1182-4H cell	OSS7 Drosophila OSS cell small RNA libraries, rep3	V075 ML-DmBG1-C1	V025 S2R+ cell	OSS6 Drosophila OSS cell small RNA libraries, rep2	V010 MLDmD20c5	OSS2 Drosophila OSS cell small RNA libraries, rep1	SRR032095 AGO1 IP dcr2 knockdown	V018 Kc167 cell	V028 CMEW1 Cl.8+ cell	SRR010951 Ago3 heterozygotes, oxidized	V019 GM2 cell	SRR029031 loqs-ORF knockdown	V021 ML-DmD21 cell	V067 S2-NP	GSM280086 WT ovaries (AGO2IP)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR023197 RNA Library from S2 control cells	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	GSM180337 tissue culture cells (S2 only)	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR023399 RNA bound by P19 protein	GSM424739 S2 parental	SRR032093 ago1 knockdown
.........ACTCTATATACAGGGTGCTATGTTG.............................................................................................	25	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................GTCTTTGGTTATCTAGCTGTATG.......................................................................	23	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................GTCTTTGGTTATCTAGCTGTAT........................................................................	22	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TCTTTGGTTATCTAGCTG...........................................................................	18	1	244	6	8	6	15	6	5	6	15	16	3	16	6	11	9	0	4	0	0	1	1	7	3	0	3	3	1	0	0	0	6	0	0	0	0	1	0	1	3	11	0	0	0	0	0	1	0	0	1	3	3	0	0	48	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	2	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TCTTTGGTTATCTAGCTGTATGAGTGA..................................................................	27	1	7	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TCTTTGGTTATCTAGCTGTATGAGTGATA................................................................	29	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TCTTTGGTTATCTAGCTGTATGAGT....................................................................	25	1	19	1	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TCTTTGGTTATCTAGCTGTATGAGTG...................................................................	26	1	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TCTTTGGTTATCTAGCTGTATGAGTGAT.................................................................	28	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TCTTTGGTTATCTAGCTGTATGAGTGATAAA..............................................................	31	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................TCTTTGGTTATCTAGCTGTATGA......................................................................	23	1	405519	73654	77969	29054	12575	20246	9924	10675	9484	5770	7464	7862	18575	6997	6506	6459	5054	9259	4173	9900	6697	3556	2794	3511	2746	5012	2188	1386	2038	4796	1952	3916	992	2313	3758	765	2086	1136	1441	610	1697	598	576	896	499	714	309	479	1064	391	391	1093	70	179	583	783	280	165	207	44	200	693	411	167	158	513	485	170	139	555	121	100	389	107	262	151	240	220	113	104	159	310	205	292	68	329	164	91	69	210	77	140	55	76	72	81	104	76	47	88	40	38	28	32	37	41	57	36	40	56	29	58	62	36	10	64	25	46	26	24	37	28	24	11	13	26	30	10	15	15	21	0	16	21	31	24	9	14	1	5	0	6	1	6	5	8	3	11	0	4	0	1	2	1	1	1	2	0	1	1	1	2	1	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................AGCTAGCTTACCGAAGTT.................................	18	1	3	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................AGCTAGCTTACCGAAGTTA................................	19	1	6	0	0	0	0	0	0	0	0	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................GCTAGCTTACCGAAGTTA................................	18	1	11	0	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................CTAGCTTACCGAAGTTAA...............................	18	1	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................ATATTAGCGTCTGCCCAGCGAGACA.......	25	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	V082 embryo 14-24hr	V081 embryo 2-6hr	V001 IR-	V090 CS  male total RNA	V002 IR+	SRR031703 Total small RNAs from r2d2 homozygous flies	V083 male, one day	SRR029633 total small RNAs from hen1 homozygous flies	SRR031696_2152	V084 female, one day	SRR031701 Total small RNAs from r2d2 heterozygous flies	S12 6-10h #1 (10)	SRR031692 Total small RNAs from Oregon R	SRR031697 Total small RNAs from dcr-2 heterozygous flies	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR031699 Total small RNAs from dcr-2 homozygous flies	S28 0-2d pupae	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	S13 6-10h #2 (11)	S27 0-1d Pupae (w)	SRR001349 heterozygous dcr-2_untreated	SRR001338 IR non-beta-eliminated	SRR001345 ago2 non-beta-eliminated	S29 male head #1	S19 2-4day pupae #1	SRR001664 homozygous dcr-2_untreated	GSM280085 WT testes (18-24nt)	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	S10 2-6h #1 (8)	SRR001347 ago2 untreated	S21 disk #2	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	S24 male body #2	S5 imaginal disc	V098 dcr-2[L811fsX] ovary	S7 12-24hr embryo	S22 female head #1	S9 0-1h #3 (7)	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	S18 3rd inster #2	V097 CS ovary	SRR001343 dcr-2 non-beta-eliminated	S23 female body #2	V089 ago2[414] ovary total RNA	SRR001344 dcr-2 beta-eliminated	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	V088 r2d2[1] ovary total RNA	S17 3rd inster #1	SRR001341 WT_males non-beta-eliminated	SRR001339 WT_females non-beta-eliminated	S20 2-4day pupae#2	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	SRR001348 ago2 oxidized	S2 female head	S11 2-6h #2 (9)	GSM280084 loqs-/- ovaries (18-29nt)	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	V064 ago2[414], ovary, AGO1IP	SRR031693_4	V063 CS,ovary,AGO1IP	GSM180332 mid embryo (6-10)	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	GSM467729 WT	V065 dcr-2[L811fsX], ovary, AGO1IP	GSM180333 late embryo (12-24)	GSM180335 imaginal discs	GSM343287 Drosophila Toll 10b mutant embryos	V066 r2d2[1], ovary, AGO1IP	S14 0-1hr #1 (A)	GSM467730 r2d2	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	S25 1st instar #1	GSM379065 Zuc Heterozygote	S34 KC+48 #1	GSM379059	S4 female body	S32 s2+48 #2	S1 male head	GSM379057 Krimp Mutant	GSM180328 adult heads (female heads, male heads)	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	S3 male body	GSM180334 larvae: 1st instar and 3rd instars	V008 S2-DRSC	GSM180331 early embryo (2-6)	S35 KC+48 #2	SRR014280 Ovary_rep1 w1118_P	SRR014275 Ovary_rep1 LK_P	S26 1st instar #2	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	S33 KC-48 #2	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM379063 Vasa Heterozygote	GSM379061 Squ Heterozygote	SRR032092 mock oxidized	GSM467731 loq	SRR014273 Ovary_rep1_Har_P	SRR001337 WT_females beta-eliminated	GSM379053 Aub Mutant	SRR014277 Ovary_rep1 NA_P	V076 ML-DmBG3-C2	GSM379056 Krimp Heterozygote	GSM379064 Vasa Mutant	GSM379060 SpnE Heterozygote	GSM379066 Zuc Mutant	SRR014282 Ovary_rep1 wK_P	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	S30 s2-48 #2	GSM379051 Armi Mutant	GSM239052 S2 cells, non beta-eliminated	GSM180329 adult bodies (female bodies, male bodies)	GSM379055 Flam Mutant	GSM239041 fly heads, non beta-eliminated	SRR001346 ago2 beta-eliminated	GSM379052 Aub Heterozygote	S31 s2+48 #1	GSM379067 SpnE Mutant	GSM280087 S2cell (AGO2IP)	SRR001340 IR beta-eliminated	GSM379062 Squ Mutant	GSM379050 Armi Heterozygote	GSM379058	GSM280083 dcr-2-/- ovaries (18-29nt)	S16 KC -48 #1	SRR010959 Ago3 IP in heterozygotes	GSM379054 Flam Heterozygote	V011 Sg4	SRR029032 r2d2 knockdown	SRR029033 lacZ knockdown	SRR010954 Aub trans-heterozygotes, oxidized	S15 S2 -48 #1	S8 S2-48,+48, KC-48, +48 mix	GSM180330 very early embryo (0-1)	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM280082 WT ovaries (18-29nt)	SRR032094 ago2 knockdown	GSM239051 S2 cells, beta-eliminated	SRR029029 dcr-1 knockdown	SRR010953 Aub heterozygotes, oxidized	SRR010955 Aub IP in Ago3 heterozygotes	SRR029028 untreated (mock)	SRR001342 WT_males beta-eliminated	SRR029030 dcr-2 knockdown	GSM246084 D. melanogaster adult male heads 454	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR010956 Piwi IP in Ago3 heterozygotes	GSM239050 fly heads, beta-eliminated	V009 CMEL1	SRR010960 wt, oxidized	V024 kc167 cell	GSM280088 S2cell (AGO1IP)	SRR023402 total RNA extracted from NLS-P19 cells	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR023407 RNA bound by NLS-P19 protein	V033 CMEW1 Cl.8+ cell	OSS8 Drosophila OSS cell small RNA libraries, rep4	V020 S2R+ cell	V026 1182-4H cell	OSS7 Drosophila OSS cell small RNA libraries, rep3	V075 ML-DmBG1-C1	V025 S2R+ cell	OSS6 Drosophila OSS cell small RNA libraries, rep2	V010 MLDmD20c5	OSS2 Drosophila OSS cell small RNA libraries, rep1	SRR032095 AGO1 IP dcr2 knockdown	V018 Kc167 cell	V028 CMEW1 Cl.8+ cell	SRR010951 Ago3 heterozygotes, oxidized	V019 GM2 cell	SRR029031 loqs-ORF knockdown	V021 ML-DmD21 cell	V067 S2-NP	GSM280086 WT ovaries (AGO2IP)	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR023197 RNA Library from S2 control cells	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	GSM180337 tissue culture cells (S2 only)	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR023399 RNA bound by P19 protein	GSM424739 S2 parental	SRR032093 ago1 knockdown
.......................................................................................CGAAGTTAATATTAGCGTC.....................	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0