Page generated on Fri Oct 15 12:01:46 2010

dme-mir-iab-4as



dme-mir-iab-4as

View dme-mir-iab-4as on miRBase

miRNA	Length	Perfect(sense)	Perfect(antisense)	5' moR	5'arm	Loop	3'arm	3' moR	Other	Loop Size	Mature	Star
dme-mir-iab-4as	117	2156	16153	34	3775	2	14416		82	19	3775	14416

ACATCCCACGTTGTTAGTGCTCTCTCGTGTTACGTATACTGAAGGTATACCGGATAGGATACACTCAGGATACATTCAGTATACGTTTACGAGGTCGCACAGAATCGCCATTATTCA
........................(((((..((((((((((((.((((.((.((..(....)..)).)))))).)))))))))))).))))).........................-26.90
........((...((.((((..(((((((..((((((((((((.((((.((.((..(....)..)).)))))).)))))))))))).)))))))..)))).))..))..........-39.20
Sense strand

	Size	Blast	Total	S13 6-10h #2 (11)	S12 6-10h #1 (10)	S10 2-6h #1 (8)	GSM467730 r2d2	GSM467729 WT	V001 IR-	V011 Sg4	S28 0-2d pupae	V090 CS  male total RNA	S9 0-1h #3 (7)	V002 IR+	V082 embryo 14-24hr	S11 2-6h #2 (9)	GSM467731 loq	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	S19 2-4day pupae #1	V081 embryo 2-6hr	S24 male body #2	S7 12-24hr embryo	S14 0-1hr #1 (A)	SRR031697 Total small RNAs from dcr-2 heterozygous flies	S25 1st instar #1	GSM180332 mid embryo (6-10)	V083 male, one day	S27 0-1d Pupae (w)	S21 disk #2	S26 1st instar #2	SRR031696_2152	S29 male head #1	S5 imaginal disc	SRR031703 Total small RNAs from r2d2 homozygous flies	S17 3rd inster #1	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	V084 female, one day	V098 dcr-2[L811fsX] ovary	S23 female body #2	GSM180331 early embryo (2-6)	SRR029633 total small RNAs from hen1 homozygous flies	S18 3rd inster #2	GSM180333 late embryo (12-24)	SRR031701 Total small RNAs from r2d2 heterozygous flies	V064 ago2[414], ovary, AGO1IP	GSM379059	V088 r2d2[1] ovary total RNA	V089 ago2[414] ovary total RNA	V097 CS ovary	SRR031692 Total small RNAs from Oregon R	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	V066 r2d2[1], ovary, AGO1IP	GSM379065 Zuc Heterozygote	S3 male body	GSM379057 Krimp Mutant	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	GSM280085 WT testes (18-24nt)	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S34 KC+48 #1	S35 KC+48 #2	S20 2-4day pupae#2	SRR014277 Ovary_rep1 NA_P	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	V065 dcr-2[L811fsX], ovary, AGO1IP	GSM343287 Drosophila Toll 10b mutant embryos	V063 CS,ovary,AGO1IP	S4 female body	SRR014275 Ovary_rep1 LK_P	GSM379064 Vasa Mutant	S33 KC-48 #2	SRR014282 Ovary_rep1 wK_P	S32 s2+48 #2	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR001338 IR non-beta-eliminated	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	GSM180330 very early embryo (0-1)	SRR001664 homozygous dcr-2_untreated	GSM379061 Squ Heterozygote	S22 female head #1	S2 female head	GSM379056 Krimp Heterozygote	S1 male head	GSM379066 Zuc Mutant	GSM180335 imaginal discs	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR010954 Aub trans-heterozygotes, oxidized	GSM379055 Flam Mutant	GSM180334 larvae: 1st instar and 3rd instars	GSM379062 Squ Mutant	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM379058	GSM180328 adult heads (female heads, male heads)	GSM280084 loqs-/- ovaries (18-29nt)	GSM379054 Flam Heterozygote	GSM379053 Aub Mutant	GSM379051 Armi Mutant	GSM379067 SpnE Mutant	SRR031693_4	GSM379050 Armi Heterozygote	GSM379052 Aub Heterozygote	OSS2 Drosophila OSS cell small RNA libraries, rep1	SRR014273 Ovary_rep1_Har_P	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	V075 ML-DmBG1-C1	GSM379060 SpnE Heterozygote	GSM180329 adult bodies (female bodies, male bodies)	SRR001347 ago2 untreated	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	S16 KC -48 #1	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR001349 heterozygous dcr-2_untreated	V010 MLDmD20c5	GSM379063 Vasa Heterozygote	SRR010960 wt, oxidized	SRR001343 dcr-2 non-beta-eliminated	SRR014280 Ovary_rep1 w1118_P	S8 S2-48,+48, KC-48, +48 mix	S30 s2-48 #2	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM280082 WT ovaries (18-29nt)	SRR010951 Ago3 heterozygotes, oxidized	SRR010953 Aub heterozygotes, oxidized	GSM280087 S2cell (AGO2IP)	GSM280086 WT ovaries (AGO2IP)	V008 S2-DRSC	V018 Kc167 cell	GSM239051 S2 cells, beta-eliminated	SRR032094 ago2 knockdown	V009 CMEL1	SRR001341 WT_males non-beta-eliminated	V019 GM2 cell	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR029031 loqs-ORF knockdown	S31 s2+48 #1	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR001337 WT_females beta-eliminated	V076 ML-DmBG3-C2	SRR023197 RNA Library from S2 control cells	SRR032092 mock oxidized	SRR029033 lacZ knockdown	SRR010956 Piwi IP in Ago3 heterozygotes	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	SRR001345 ago2 non-beta-eliminated	V020 S2R+ cell	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	SRR032095 AGO1 IP dcr2 knockdown	SRR029029 dcr-1 knockdown	V028 CMEW1 Cl.8+ cell	GSM280088 S2cell (AGO1IP)	SRR010959 Ago3 IP in heterozygotes	V026 1182-4H cell	SRR029032 r2d2 knockdown	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	V021 ML-DmD21 cell	SRR001344 dcr-2 beta-eliminated	S15 S2 -48 #1	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	V025 S2R+ cell	V067 S2-NP	SRR023399 RNA bound by P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	SRR029030 dcr-2 knockdown	GSM239052 S2 cells, non beta-eliminated	GSM239041 fly heads, non beta-eliminated	GSM424739 S2 parental	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR029028 untreated (mock)	SRR032093 ago1 knockdown	V024 kc167 cell	V033 CMEW1 Cl.8+ cell	SRR001346 ago2 beta-eliminated
.......ACGTTGTTAGTGCTCTCTCGTG........................................................................................	22	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CGTTGTTAGTGCTCTCTCGTG........................................................................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GTTGTTAGTGCTCTCTCGTG........................................................................................	20	1	10	6	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TTGTTAGTGCTCTCTCGTG........................................................................................	19	1	20	0	0	0	0	0	0	7	0	0	0	0	4	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TTGTTAGTGCTCTCTCGTGT.......................................................................................	20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............GTTAGTGCTCTCTCGTGT.......................................................................................	18	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............AGTGCTCTCTCGTGTTACGTA.................................................................................	21	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TGTTACGTATACTGAAGGTAT.....................................................................	21	1	22	0	0	0	0	0	1	4	0	3	0	0	9	0	0	1	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TGTTACGTATACTGAAGGTATA....................................................................	22	1	5	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TGTTACGTATACTGAAGGTA......................................................................	20	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GTTACGTATACTGAAGGTATACCGG................................................................	25	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TTACGTATACTGAAGGTAT.....................................................................	19	1	999	0	0	0	0	0	8	122	1	290	1	3	32	0	0	88	0	3	11	0	0	3	0	0	100	0	0	0	5	0	0	1	0	1	51	55	0	0	2	0	0	1	34	14	20	30	29	0	0	20	3	1	4	0	0	8	0	0	0	0	2	0	9	0	8	0	7	4	0	4	0	0	0	2	0	0	1	3	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	3	2	1	2	1	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TTACGTATACTGAAGGTATAC...................................................................	21	1	193	0	0	0	0	0	7	92	4	1	0	5	2	0	0	3	0	0	3	0	0	24	0	0	2	1	0	0	6	0	0	9	0	1	0	1	1	0	5	0	0	1	1	3	0	1	0	1	0	0	2	0	2	3	0	2	1	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................ATAGGATACACTCAGGATACAT..........................................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................AGGATACATTCAGTATACGTTT.............................	22	1	26	0	0	0	0	0	0	6	0	1	6	2	0	0	0	1	1	0	3	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................AGGATACATTCAGTATACGTT..............................	21	1	4	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................AGGATACATTCAGTATACGTTTA............................	23	1	29	4	5	3	0	0	0	5	5	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................GGATACATTCAGTATACGTTTA............................	22	1	154	35	21	34	5	4	0	2	7	0	11	0	1	0	0	0	6	1	8	2	1	3	1	2	0	2	3	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................GGATACATTCAGTATACGTTT.............................	21	1	10	4	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................GGATACATTCAGTATACGT...............................	19	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................GGATACATTCAGTATACG................................	18	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................GATACATTCAGTATACGT...............................	18	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................GATACATTCAGTATACGTTTA............................	21	1	5	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TACATTCAGTATACGTTTA............................	19	1	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TACATTCAGTATACGTTTACGA.........................	22	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

Antisense strand

	Size	Blast	Total	S13 6-10h #2 (11)	S12 6-10h #1 (10)	S10 2-6h #1 (8)	GSM467730 r2d2	GSM467729 WT	V001 IR-	V011 Sg4	S28 0-2d pupae	V090 CS  male total RNA	S9 0-1h #3 (7)	V002 IR+	V082 embryo 14-24hr	S11 2-6h #2 (9)	GSM467731 loq	SRR014278 Ovary_rep1 w1118(fem)_x_Har(male)_F1	S19 2-4day pupae #1	V081 embryo 2-6hr	S24 male body #2	S7 12-24hr embryo	S14 0-1hr #1 (A)	SRR031697 Total small RNAs from dcr-2 heterozygous flies	S25 1st instar #1	GSM180332 mid embryo (6-10)	V083 male, one day	S27 0-1d Pupae (w)	S21 disk #2	S26 1st instar #2	SRR031696_2152	S29 male head #1	S5 imaginal disc	SRR031703 Total small RNAs from r2d2 homozygous flies	S17 3rd inster #1	SRR014270 Embryo_0-2hrs rep1_NA_0_2hr_Emb	V084 female, one day	V098 dcr-2[L811fsX] ovary	S23 female body #2	GSM180331 early embryo (2-6)	SRR029633 total small RNAs from hen1 homozygous flies	S18 3rd inster #2	GSM180333 late embryo (12-24)	SRR031701 Total small RNAs from r2d2 heterozygous flies	V064 ago2[414], ovary, AGO1IP	GSM379059	V088 r2d2[1] ovary total RNA	V089 ago2[414] ovary total RNA	V097 CS ovary	SRR031692 Total small RNAs from Oregon R	SRR014268 Embryo_0-2hrs rep1_HAR_0_2hr_Emb	V066 r2d2[1], ovary, AGO1IP	GSM379065 Zuc Heterozygote	S3 male body	GSM379057 Krimp Mutant	SRR031699 Total small RNAs from dcr-2 homozygous flies	SRR014269 Embryo_0-2hrs rep1_LK_0_2hr_Emb	GSM280085 WT testes (18-24nt)	SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies	S34 KC+48 #1	S35 KC+48 #2	S20 2-4day pupae#2	SRR014277 Ovary_rep1 NA_P	SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies	V065 dcr-2[L811fsX], ovary, AGO1IP	GSM343287 Drosophila Toll 10b mutant embryos	V063 CS,ovary,AGO1IP	S4 female body	SRR014275 Ovary_rep1 LK_P	GSM379064 Vasa Mutant	S33 KC-48 #2	SRR014282 Ovary_rep1 wK_P	S32 s2+48 #2	SRR014271 Embryo_0-2hrs rep1_w1118_0_2hr_Emb	SRR001338 IR non-beta-eliminated	SRR014276 Ovary_rep1 NA(fem)_x_Har(male)_F1	SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1	GSM180330 very early embryo (0-1)	SRR001664 homozygous dcr-2_untreated	GSM379061 Squ Heterozygote	S22 female head #1	S2 female head	GSM379056 Krimp Heterozygote	S1 male head	GSM379066 Zuc Mutant	GSM180335 imaginal discs	SRR014272 Embryo_0-2hrs rep1_wK_0_2hr_Emb	GSM180336 pupae: 0-1 day, 0-2 day, 2-4 day	SRR010954 Aub trans-heterozygotes, oxidized	GSM379055 Flam Mutant	GSM180334 larvae: 1st instar and 3rd instars	GSM379062 Squ Mutant	SRR014281 Ovary_rep1 wK(fem)_x_w1118(male)_F1	GSM280083 dcr-2-/- ovaries (18-29nt)	GSM379058	GSM180328 adult heads (female heads, male heads)	GSM280084 loqs-/- ovaries (18-29nt)	GSM379054 Flam Heterozygote	GSM379053 Aub Mutant	GSM379051 Armi Mutant	GSM379067 SpnE Mutant	SRR031693_4	GSM379050 Armi Heterozygote	GSM379052 Aub Heterozygote	OSS2 Drosophila OSS cell small RNA libraries, rep1	SRR014273 Ovary_rep1_Har_P	SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies	V075 ML-DmBG1-C1	GSM379060 SpnE Heterozygote	GSM180329 adult bodies (female bodies, male bodies)	SRR001347 ago2 untreated	SRR014279 Ovary_rep1 w1118(fem)_x_wK(male)_F1	S16 KC -48 #1	OSS8 Drosophila OSS cell small RNA libraries, rep4	SRR010952 Ago3 trans-heterozygotes, oxidized	SRR001349 heterozygous dcr-2_untreated	V010 MLDmD20c5	GSM379063 Vasa Heterozygote	SRR010960 wt, oxidized	SRR001343 dcr-2 non-beta-eliminated	SRR014280 Ovary_rep1 w1118_P	S8 S2-48,+48, KC-48, +48 mix	S30 s2-48 #2	SRR010958 Piwi IP in Ago3 trans-heterozygotes	GSM280082 WT ovaries (18-29nt)	SRR010951 Ago3 heterozygotes, oxidized	SRR010953 Aub heterozygotes, oxidized	GSM280087 S2cell (AGO2IP)	GSM280086 WT ovaries (AGO2IP)	V008 S2-DRSC	V018 Kc167 cell	GSM239051 S2 cells, beta-eliminated	SRR032094 ago2 knockdown	V009 CMEL1	SRR001341 WT_males non-beta-eliminated	V019 GM2 cell	GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries	SRR029031 loqs-ORF knockdown	S31 s2+48 #1	SRR010957 Aub IP in Ago3 trans-heterozygotes	SRR001337 WT_females beta-eliminated	V076 ML-DmBG3-C2	SRR023197 RNA Library from S2 control cells	SRR032092 mock oxidized	SRR029033 lacZ knockdown	SRR010956 Piwi IP in Ago3 heterozygotes	GSM424740 S2 pKF63 stably transfected	SRR023400 total RNA extracted from P19 cells	SRR001345 ago2 non-beta-eliminated	V020 S2R+ cell	SRR023407 RNA bound by NLS-P19 protein	GSM180337 tissue culture cells (S2 only)	SRR023402 total RNA extracted from NLS-P19 cells	SRR001340 IR beta-eliminated	GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries	GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries	SRR001342 WT_males beta-eliminated	GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries	GSM231091 PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)	SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies	GSM246084 D. melanogaster adult male heads 454	GSM239050 fly heads, beta-eliminated	SRR032095 AGO1 IP dcr2 knockdown	SRR029029 dcr-1 knockdown	V028 CMEW1 Cl.8+ cell	GSM280088 S2cell (AGO1IP)	SRR010959 Ago3 IP in heterozygotes	V026 1182-4H cell	SRR029032 r2d2 knockdown	OSS7 Drosophila OSS cell small RNA libraries, rep3	GSM424741 S2 pKF63 transiently transfected	SRR032096 AGO2 IP dcr2 knockdown	V021 ML-DmD21 cell	SRR001344 dcr-2 beta-eliminated	S15 S2 -48 #1	GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0	SRR001339 WT_females non-beta-eliminated	SRR001348 ago2 oxidized	V025 S2R+ cell	V067 S2-NP	SRR023399 RNA bound by P19 protein	SRR010955 Aub IP in Ago3 heterozygotes	SRR029030 dcr-2 knockdown	GSM239052 S2 cells, non beta-eliminated	GSM239041 fly heads, non beta-eliminated	GSM424739 S2 parental	OSS6 Drosophila OSS cell small RNA libraries, rep2	SRR029028 untreated (mock)	SRR032093 ago1 knockdown	V024 kc167 cell	V033 CMEW1 Cl.8+ cell	SRR001346 ago2 beta-eliminated
......................TCTCGTGTTACGTATACTGAAGGTATACCG.................................................................	30	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GTGTTACGTATACTGAAGGTATA....................................................................	23	1	9	0	0	2	0	0	0	0	0	0	0	0	0	3	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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