| Size | Blast | Total Norm | S29 male head #1 modENCODE_751 | SRR031696_2152 Ago1-associated small RNAs from Oregon R . | V082 embryo 14-24hr modENCODE_2743 | V083 male, one day modENCODE_2008 | SRR031703 Total small RNAs from r2d2 homozygous flies | S22 female head #1 modENCODE_750 | SRR029633 total small RNAs from hen1 homozygous flies | S1 male head modENCODE_747 | V084 female, one day modENCODE_2009 | SRR031699 Total small RNAs from dcr-2 homozygous flies | SRR031692 Total small RNAs from Oregon R | V001 IR- modENCODE_2971 | SRR001343 dcr-2 non-beta-eliminated | SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies GSM466497 | SRR031701 Total small RNAs from r2d2 heterozygous flies | SRR031697 Total small RNAs from dcr-2 heterozygous flies | SRR001347 ago2 untreated | SRR001664 homozygous dcr-2_untreated | SRR001341 WT_males non-beta-eliminated | SRR001344 dcr-2 beta-eliminated GSM278692 | SRR001339 WT_females non-beta-eliminated | S24 male body #2 modENCODE_2554 | SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 | S23 female body #2 modENCODE_2555 | S25 1st instar #1 modENCODE_762 | S16 KC -48 #1 modENCODE_738 | S21 disk #2 modENCODE_2376 | GSM379065 Zuc Heterozygote | |
| .......AGTCGTCGTTGCGTGTTGTAG........................................................................................................................... | 21 | 1 | 26.00 | 6.00 | 7.00 | 0.00 | 2.00 | 1.00 | 0.00 | 2.00 | 0.00 | 1.00 | 1.00 | 2.00 | 0.00 | 1.00 | 0.00 | 1.00 | 1.00 | 0.00 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| .......AGTCGTCGTTGCGTGTTGTAGG.......................................................................................................................... | 22 | 1 | 24.00 | 0.00 | 4.00 | 11.00 | 3.00 | 2.00 | 0.00 | 1.00 | 0.00 | 1.00 | 0.00 | 0.00 | 2.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| ..............................................................................................................................TGCAACACTCACACCACGGCAA... | 22 | 1 | 20.00 | 17.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| ..............................................................................................................................TGCAACACTCACACCACGGCA.... | 21 | 1 | 6.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 2.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| ..............................................................................................................................TGCAACACTCACACCACGGCAAC.. | 23 | 1 | 5.00 | 0.00 | 3.00 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| ................................CCTGGTCTACTGAGCTCCG.................................................................................................... | 19 | 1 | 3.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 2.00 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| .......AGTCGTCGTTGCGTGTTG.............................................................................................................................. | 18 | 1 | 2.00 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| ........GTCGTCGTTGCGTGTTGTA............................................................................................................................ | 19 | 1 | 1.00 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| ....................TGTTGTAGGTGGCCTGGTCTACT............................................................................................................ | 23 | 1 | 1.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| .......AGTCGTCGTTGCGTGTTGTAGGTGGCC..................................................................................................................... | 27 | 1 | 1.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| ...............................GCCTGGTCTACTGAGCTC...................................................................................................... | 18 | 1 | 1.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| Size | Blast | Total Norm | S29 male head #1_modENCODE_751 | SRR031696_2152 Ago1-associated small RNAs from Oregon R_. | V082 embryo 14-24hr_modENCODE_2743 | V083 male, one day_modENCODE_2008 | SRR031703 Total small RNAs from r2d2 homozygous flies _ | S22 female head #1_modENCODE_750 | SRR029633 total small RNAs from hen1 homozygous flies _ | S1 male head_modENCODE_747 | V084 female, one day_modENCODE_2009 | SRR031699 Total small RNAs from dcr-2 homozygous flies _ | SRR031692 Total small RNAs from Oregon R _ | V001 IR-_modENCODE_2971 | SRR001343 dcr-2 non-beta-eliminated _ | SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies _GSM466497 | SRR031701 Total small RNAs from r2d2 heterozygous flies _ | SRR031697 Total small RNAs from dcr-2 heterozygous flies _ | SRR001347 ago2 untreated _ | SRR001664 homozygous dcr-2_untreated _ | SRR001341 WT_males non-beta-eliminated _ | SRR001344 dcr-2 beta-eliminated _GSM278692 | SRR001339 WT_females non-beta-eliminated _ | S24 male body #2_modENCODE_2554 | SRR014274 Ovary_rep1 LK(fem)_x_Har(male)_F1 _ | S23 female body #2_modENCODE_2555 | S25 1st instar #1_modENCODE_762 | S16 KC -48 #1_modENCODE_738 | S21 disk #2_modENCODE_2376 | GSM379065 Zuc Heterozygote _ | |
| ........................................................................................TGCTGCTGCTGCTGCGGCT............................................ | 19 | 39 | 0.18 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.10 | 0.00 | 0.08 | 0.00 | 0.00 | 0.00 | 0.00 |
| ................................................................................GCGGCCGCTGCTGCTGCTG.................................................... | 19 | 7 | 0.14 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.14 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| .........................................................................................GCTGCTGCTGCTGCGGCT............................................ | 18 | 44 | 0.05 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.05 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| ..............................................................................................TGCTGCTGCGGCTGCTGC....................................... | 18 | 53 | 0.04 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.02 | 0.02 | 0.00 |
| ...........................................................................................TGCTGCTGCTGCGGCTGC.......................................... | 18 | 44 | 0.02 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.02 | 0.00 | 0.00 | 0.00 |
| ...................................................................................GCCGCTGCTGCTGCTGCTG................................................. | 19 | 89 | 0.01 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.01 |