| Size | Blast | Total Norm | # of libraries | GSM467729 WT_ | GSM467730 r2d2_ | GSM379067 SpnE Mutant_ | GSM280087 S2cell (AGO2IP)_modENCODE_2379 | GSM379058 Piwi Heterozygote_ | GSM280086 WT ovaries (AGO2IP)_modENCODE_2381 | SRR014273 Ovary_rep1_Har_P_ | GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries_ | SRR031697 Total small RNAs from dcr-2 heterozygous flies_ | SRR001347 ago2_untreated_ | SRR001342 WT_males_beta-eliminated_GSM278574 | GSM379064 Vasa Mutant_ | GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries_ | GSM379053 Aub Mutant_ | GSM231091 "PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)"_ | SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies_GSM466495 | GSM246084 D. melanogaster adult male heads 454_ | SRR014274 Ovary_rep1_LK(fem)_x_Har(male)_F1_ | GSM239050 "fly heads, beta-eliminated"_ | SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies_GSM466493 | GSM379055 Flam Mutant_ | SRR032095 AGO1 IP dcr2 knockdown_GSM442736 | GSM180333 late embryo (12-24)_ | SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies_GSM466491 | SRR029029 dcr-1 knockdown_ | GSM180334 larvae: 1st instar and 3rd instars_ | SRR014282 Ovary_rep1_wK_P_ | GSM280088 S2cell (AGO1IP)_modENCODE_2380 | SRR030145 _ | SRR014278 Ovary_rep1_w1118(fem)_x_Har(male)_F1_ | SRR014279 Ovary_rep1_w1118(fem)_x_wK(male)_F1_ | GSM239051 "S2 cells, beta-eliminated"_ | SRR032094 ago2 knockdown_ | SRR029633 total small RNAs from hen1 homozygous flies_ | SRR010959 Ago3 IP in heterozygotes_SRX002244 | GSM180332 mid embryo (6-10)_ | SRR031699 Total small RNAs from dcr-2 homozygous flies_ | SRR014280 Ovary_rep1_w1118_P_ | GSM180331 early embryo (2-6)_ | SRR029032 r2d2 knockdown_ | SRR014277 Ovary_rep1_NA_P_ | GSM180330 very early embryo (0-1)_ | SRR031692 Total small RNAs from Oregon R_ | SRR001341 WT_males_non-beta-eliminated_ | GSM180335 imaginal discs_ | GSM424741 S2 pKF63 transiently transfected_ | GSM180328 "adult heads (female heads, male heads)"_ | SRR032096 AGO2 IP dcr2 knockdown_GSM442736 | GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0_. | GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries_ | SRR029031 loqs-ORF knockdown_ | SRR001344 dcr-2_beta-eliminated_GSM278692 | GSM379065 Zuc Heterozygote_ | SRR001339 WT_females_non-beta-eliminated_ | SRR001348 ago2_oxidized_GSM278693 | GSM379051 Armi Mutant_ | SRR010957 Aub IP in Ago3 trans-heterozygotes_SRX002242 | SRR014270 Embryo_0-2hrs_rep1_NA_0_2hr_Emb_ | SRR031693_4 _ | SRR014268 Embryo_0-2hrs_rep1_HAR_0_2hr_Emb_ | SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies_GSM466497 | GSM379062 Squ Mutant_ | SRR014272 Embryo_0-2hrs_rep1_wK_0_2hr_Emb_ | GSM379050 Armi Heterozygote_ | GSM379056 Krimp Heterozygote_ | SRR010952 "Ago3 trans-heterozygotes, oxidized"_SRX002237 | SRR014271 Embryo_0-2hrs_rep1_w1118_0_2hr_Emb_ | SRR031696_2152 _ | GSM180336 "pupae: 0-1 day, 0-2 day, 2-4 day"_ | SRR001664 homozygous_dcr-2_untreated_ | GSM379061 Squ Heterozygote_ | SRR010958 Piwi IP in Ago3 trans-heterozygotes_SRX002243 | SRR001337 WT_females_beta-eliminated_GSM278573 | GSM343287 Drosophila Toll 10b mutant embryos_ | SRR014281 Ovary_rep1_wK(fem)_x_w1118(male)_F1_ | SRR023197 RNA Library from S2 control cells_ | SRR032092 mock oxidized_ | GSM280082 WT ovaries (18-29nt)_modENCODE_773 | SRR029033 lacZ knockdown_ | SRR001349 heterozygous_dcr-2_untreated_ | SRR010956 Piwi IP in Ago3 heterozygotes_SRX002241 | SRR023399 RNA bound by P19 protein_SRX008034 | SRR010955 Aub IP in Ago3 heterozygotes_SRX002240 | GSM379060 SpnE Heterozygote_ | GSM424740 S2 pKF63 stably transfected_ | SRR010954 "Aub trans-heterozygotes, oxidized"_SRX002239 | SRR023400 total RNA extracted from P19 cells_ | SRR001338 IR_non-beta-eliminated_ | GSM239052 "S2 cells, non beta-eliminated"_ | SRR029030 dcr-2 knockdown_ | SRR031701 Total small RNAs from r2d2 heterozygous flies_ | GSM379063 Vasa Heterozygote_ | SRR001345 ago2_non-beta-eliminated_ | SRR014269 Embryo_0-2hrs_rep1_LK_0_2hr_Emb_ | SRR023407 RNA bound by NLS-P19 protein_SRX008041 | GSM424739 S2 parental_ | GSM239041 "fly heads, non beta-eliminated"_ | GSM180337 tissue culture cells (S2 only)_ | SRR010960 "wt, oxidized"_SRX002245 | SRR023402 total RNA extracted from NLS-P19 cells_ | GSM280083 dcr-2-/- ovaries (18-29nt)_modENCODE_526 | GSM379059 Piwi Mutant_ | SRR001340 IR_beta-eliminated_GSM278575 | SRR029028 untreated (mock)_ | GSM280084 loqs-/- ovaries (18-29nt)_modENCODE_774 | SRR031703 Total small RNAs from r2d2 homozygous flies_ | SRR032093 ago1 knockdown_ | GSM379054 Flam Heterozygote_ | GSM379052 Aub Heterozygote_ | GSM280085 WT testes (18-24nt)_modENCODE_772 | GSM180329 "adult bodies (female bodies, male bodies)"_ | SRR001346 ago2_beta-eliminated_GSM278648 | SRR014275 Ovary_rep1_LK_P_ | SRR010951 "Ago3 heterozygotes, oxidized"_SRX002202 | SRR014276 Ovary_rep1_NA(fem)_x_Har(male)_F1_ | SRR001343 dcr-2_non-beta-eliminated_ | GSM379066 Zuc Mutant_ | GSM379057 Krimp Mutant_ | GSM467731 loq_ | GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries_ | SRR010953 "Aub heterozygotes, oxidized"_SRX002238 |
| Size | Blast | Total Norm | # of libraries | GSM467729 WT_ | GSM467730 r2d2_ | GSM379067 SpnE Mutant_ | GSM280087 S2cell (AGO2IP)_modENCODE_2379 | GSM379058 Piwi Heterozygote_ | GSM280086 WT ovaries (AGO2IP)_modENCODE_2381 | SRR014273 Ovary_rep1_Har_P_ | GSM154620 piRNAs associated with Piwi from Drosophila melanogaster ovaries_ | SRR031697 Total small RNAs from dcr-2 heterozygous flies_ | SRR001347 ago2_untreated_ | SRR001342 WT_males_beta-eliminated_GSM278574 | GSM379064 Vasa Mutant_ | GSM154618 23-29 nucleotide RNAs from Drosophila melanogaster ovaries_ | GSM379053 Aub Mutant_ | GSM231091 "PIWI-associated piRNA in Drosophila melanogaster ovary (454 Pyrosequencing, 2006)"_ | SRR031702 2-O-methylated small RNAs from r2d2 heterozygous flies_GSM466495 | GSM246084 D. melanogaster adult male heads 454_ | SRR014274 Ovary_rep1_LK(fem)_x_Har(male)_F1_ | GSM239050 "fly heads, beta-eliminated"_ | SRR031700 2-O-methylated small RNAs from dcr-2 homozygous flies_GSM466493 | GSM379055 Flam Mutant_ | SRR032095 AGO1 IP dcr2 knockdown_GSM442736 | GSM180333 late embryo (12-24)_ | SRR031698 2-O-methylated small RNAs from dcr-2 heterozygous flies_GSM466491 | SRR029029 dcr-1 knockdown_ | GSM180334 larvae: 1st instar and 3rd instars_ | SRR014282 Ovary_rep1_wK_P_ | GSM280088 S2cell (AGO1IP)_modENCODE_2380 | SRR030145 _ | SRR014278 Ovary_rep1_w1118(fem)_x_Har(male)_F1_ | SRR014279 Ovary_rep1_w1118(fem)_x_wK(male)_F1_ | GSM239051 "S2 cells, beta-eliminated"_ | SRR032094 ago2 knockdown_ | SRR029633 total small RNAs from hen1 homozygous flies_ | SRR010959 Ago3 IP in heterozygotes_SRX002244 | GSM180332 mid embryo (6-10)_ | SRR031699 Total small RNAs from dcr-2 homozygous flies_ | SRR014280 Ovary_rep1_w1118_P_ | GSM180331 early embryo (2-6)_ | SRR029032 r2d2 knockdown_ | SRR014277 Ovary_rep1_NA_P_ | GSM180330 very early embryo (0-1)_ | SRR031692 Total small RNAs from Oregon R_ | SRR001341 WT_males_non-beta-eliminated_ | GSM180335 imaginal discs_ | GSM424741 S2 pKF63 transiently transfected_ | GSM180328 "adult heads (female heads, male heads)"_ | SRR032096 AGO2 IP dcr2 knockdown_GSM442736 | GSM266765 Siomi Lab fruit fly S2 AGO2 Cloned Sequences v1.0_. | GSM154621 piRNAs associated with Ago3 from Drosophila melanogaster ovaries_ | SRR029031 loqs-ORF knockdown_ | SRR001344 dcr-2_beta-eliminated_GSM278692 | GSM379065 Zuc Heterozygote_ | SRR001339 WT_females_non-beta-eliminated_ | SRR001348 ago2_oxidized_GSM278693 | GSM379051 Armi Mutant_ | SRR010957 Aub IP in Ago3 trans-heterozygotes_SRX002242 | SRR014270 Embryo_0-2hrs_rep1_NA_0_2hr_Emb_ | SRR031693_4 _ | SRR014268 Embryo_0-2hrs_rep1_HAR_0_2hr_Emb_ | SRR031704 2-O-methylated small RNAs from r2d2 homozygous flies_GSM466497 | GSM379062 Squ Mutant_ | SRR014272 Embryo_0-2hrs_rep1_wK_0_2hr_Emb_ | GSM379050 Armi Heterozygote_ | GSM379056 Krimp Heterozygote_ | SRR010952 "Ago3 trans-heterozygotes, oxidized"_SRX002237 | SRR014271 Embryo_0-2hrs_rep1_w1118_0_2hr_Emb_ | SRR031696_2152 _ | GSM180336 "pupae: 0-1 day, 0-2 day, 2-4 day"_ | SRR001664 homozygous_dcr-2_untreated_ | GSM379061 Squ Heterozygote_ | SRR010958 Piwi IP in Ago3 trans-heterozygotes_SRX002243 | SRR001337 WT_females_beta-eliminated_GSM278573 | GSM343287 Drosophila Toll 10b mutant embryos_ | SRR014281 Ovary_rep1_wK(fem)_x_w1118(male)_F1_ | SRR023197 RNA Library from S2 control cells_ | SRR032092 mock oxidized_ | GSM280082 WT ovaries (18-29nt)_modENCODE_773 | SRR029033 lacZ knockdown_ | SRR001349 heterozygous_dcr-2_untreated_ | SRR010956 Piwi IP in Ago3 heterozygotes_SRX002241 | SRR023399 RNA bound by P19 protein_SRX008034 | SRR010955 Aub IP in Ago3 heterozygotes_SRX002240 | GSM379060 SpnE Heterozygote_ | GSM424740 S2 pKF63 stably transfected_ | SRR010954 "Aub trans-heterozygotes, oxidized"_SRX002239 | SRR023400 total RNA extracted from P19 cells_ | SRR001338 IR_non-beta-eliminated_ | GSM239052 "S2 cells, non beta-eliminated"_ | SRR029030 dcr-2 knockdown_ | SRR031701 Total small RNAs from r2d2 heterozygous flies_ | GSM379063 Vasa Heterozygote_ | SRR001345 ago2_non-beta-eliminated_ | SRR014269 Embryo_0-2hrs_rep1_LK_0_2hr_Emb_ | SRR023407 RNA bound by NLS-P19 protein_SRX008041 | GSM424739 S2 parental_ | GSM239041 "fly heads, non beta-eliminated"_ | GSM180337 tissue culture cells (S2 only)_ | SRR010960 "wt, oxidized"_SRX002245 | SRR023402 total RNA extracted from NLS-P19 cells_ | GSM280083 dcr-2-/- ovaries (18-29nt)_modENCODE_526 | GSM379059 Piwi Mutant_ | SRR001340 IR_beta-eliminated_GSM278575 | SRR029028 untreated (mock)_ | GSM280084 loqs-/- ovaries (18-29nt)_modENCODE_774 | SRR031703 Total small RNAs from r2d2 homozygous flies_ | SRR032093 ago1 knockdown_ | GSM379054 Flam Heterozygote_ | GSM379052 Aub Heterozygote_ | GSM280085 WT testes (18-24nt)_modENCODE_772 | GSM180329 "adult bodies (female bodies, male bodies)"_ | SRR001346 ago2_beta-eliminated_GSM278648 | SRR014275 Ovary_rep1_LK_P_ | SRR010951 "Ago3 heterozygotes, oxidized"_SRX002202 | SRR014276 Ovary_rep1_NA(fem)_x_Har(male)_F1_ | SRR001343 dcr-2_non-beta-eliminated_ | GSM379066 Zuc Mutant_ | GSM379057 Krimp Mutant_ | GSM467731 loq_ | GSM154622 piRNAs associated with Aubergine from Drosophila melanogaster ovaries_ | SRR010953 "Aub heterozygotes, oxidized"_SRX002238 | |
| ...................................................................................................................ACATGTGTTGGCGGGGGG................................. | 18 | 1 | 1.00 | 1 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| ..............................................................................................................................................GAACGCGAGCCATCAAAGG..... | 19 | 1 | 1.00 | 1 | 1.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |