| seed | --------------------------------------------------------------UUAUUCU------------- | 8 | novel |
| seed | -------------------------------------------------------------AUUAUUC-------------- | 3 | novel |
| | | | CE1 |
| cel-miR-1020 | -------------------------------------------------------------ATTATTCTGTGACACTTTCAG | 21 | 5 |
| | ------------------------------------------------------------AATTATTCTGTGACACTTTC-- | 20 | 2 |
| | -------------------------------------------------------------ATTATTCTGTGACACTTT--- | 18 | 2 |
| | ------------------------------------------------------------AATTATTCTGTGACACTTTCAG | 22 | 1 |
| | -------------------------------------------------------------ATTATTCTGTGACACTTTC-- | 19 | 1 |
| celegans | GTAAGTGTTACA---GAATAATCTTAGACAAAACAACTAA--AATTAATG-------AAAAATTATTCTGTGACACTTTCAG | |
| cbrenneri | TTGAAGTTTGTATTGGAATGATCTC-----CATTAACTAATTTTTTAGTGATTTTATAAACATTATTCATTGGAAACTTTAA | |
| | * * ** * **** **** * ****** *** ** *** ******* ** * ** * | |
| | >>>>>++++++++++++ +++++++++++++++++++++++++ ++++++++ +++++++++++++++++++++++++>>>>> | T16G12.1 T16G12.1 T16G12.1 |
| celegans | (.(((((((((( (((((((.................. ........ ....))))))))))))))))).).. | 1.000 -19.01 |
| cbrenneri | .((((((((.((...(((((((... .....(((((....)))))............)))))))..)).)))))))). | 0.792 -14.25 |