| seed | ----------UCCAGUA--------------------------------------------------------------------------------------- | 1 | novel |
| | | | CE1 |
| | ---------GTCCAGTAGCGGCAGCTTGC--------------------------------------------------------------------------- | 20 | 1 |
| celegans | ctttaacttGTCCAGTAGCGGCAGCTTGCttacgagcagcattttcccgaatcgccttcacctctgcctcctcagcatcctgttgctccttgacaatcgtaagt | |
| | ******************************************************************************************************** | |
| | ------------------------------------------------------------------------------------------------------------------ | Y74C9A.4a Y74C9A.4 Y74C9A.4 |
| | ------------------------------------------------------------------------------------------------------------------ | Y74C9A.4b Y74C9A.4 Y74C9A.4 |
| celegans | (((....(((((.((.((((((((..((((...((((((........((...)).........)))).))...))))..)))))))).)).)))))....))). | 1.000 -27.73 |
| seed | -----------------------------UCUGAAA------------------------------------------------------------------------------------------------------------------ | 1 | novel |
| | | | CE1 |
| | ----------------------------CTCTGAAAATAGGCAGTCTAC----------------------------------------------------------------------------------------------------- | 21 | 1 |
| celegans | --TGGAAG----------CTGGAAATTTCTCTGAAAATAGGCAGTCTACCGGAC---------ATCTCAGGTCTTACATAGGTAGTTTGTAATTGGAATCCGGAGATTGCAATTT--AATTTTCAATTTCCGTTTTTCAT---------- | |
| cremanei | ----------------------------ATCTGAAAATAGGATTTTT----------------GTCTCAAAAATT------GGATTTTTTGTC------TCAAAAATCGGAATTTTGGACTAAAAATCTGCAATTTTCAGCCCAAAACTT | |
| cbriggsae | GATGGAGGTCTCCTAATTTTATTGATTTTTCTGAAAATTGTGAGTTTTTTGGGATTTTTTTGAATTTCGAAATTTTTTCAAAAAATTTTTTTCAAGTTTTCAAATTTTTGGATTTTTAAATGAGAGT-----ATTTTCATC--------- | |
| | ********* * * * * ** ** * *** * * * * **** * * * * ****** | |
| celegans | (((((( .(((((((.....(((((((..(((((((.(((((. .((.(((...(((((.........)))))))))).))))))))))))..... .)))))))))))))).)))))). | 0.990 -34.20 |
| cremanei | ..((((((((.(((((((( (((.(((((.(( .(((((((.... ..))))))).)).)))))))).))))))))...)))))))).......... | 1.000 -26.70 |
| cbriggsae | ((((((((((((.....((((..(((((...((((((((..(((((((((((((...(((((.....)))))...)))))))))))))......)))))))).......)))))..))))...))). ))))))))) | 0.934 -29.50 |
| seed | -----------------GCCAAGC------------------------------------------------------------------------------------------- | 2 | novel |
| | | | CE1 |
| | ----------------TGCCAAGCGCTACG-TCACCAGGGG-------------------------------------------------------------------------- | 24 | 2 |
| celegans | GTCGACCGAGCGTCCGTGCCAAGCGCTACG-TCACCAGGGGATAACTGTCGGAAGGCGGTTAGTCCCGGGTGCATAAGGAGTCGTGGATGGTTCAGGACCGAAAGGTAGCAGACA | |
| cbriggsae | ----------------TGCCAAGCGCTACG-TCGCCAGGGGTTGTCTGTCGGAGGACGGACGGTCCCGGGCGCATAAGGAGTGGTCTA--------------------------- | |
| cbrenneri | ---------GCGTCCGTGCCAAGCGCTACG-TCGCTAGGGGTCATCAGACGGAAGTTTGAAGGTCCCGGGCGCATAAGGAGTGGTGTATGGTTCAGG------------------ | |
| cjaponica | ---------------GTGCCAAGCGCTGCG-TCGCCAGGGGTCATCCGGCGGAGGCTGGGCGGTCCCGGGCGCTTAAGGAGTGGTGTATGGCTC--------------------- | |
| cremanei | ----------------TGCCAAGCGCTGCGTTCACTAGGGGTCATCCTTCGGAAGAGGGGCGGTCCCGGGTGCATAAGGAGCGGTGGATGGTT---------------------- | |
| | *********** ** ** * ***** * **** * * ******** ** ******* ** * | |
| | ----------------------------------- ----------------------------------------------------------------------------------------- | R144.1 R144.1 klp-6 |
| celegans | (((.(((...(((((..((((.(((((..( (((((.(((..((((((((....))))))))..))).)))).))....)).)))...))))...))).))...)))....))). | 0.920 -49.10 |
| cbriggsae | .((((....((..( (((((.(((..((((((((....))))))))..))).)))).))..))..))))... | 0.985 -33.00 |
| cbrenneri | ....((..((((.(((((((. .((((.((((((.((((((....)))))).)))))).))))........))))))).))))...)) | 0.999 -37.90 |
| cjaponica | ..((((.(((((((. .((((.((((((..(((((....)))))..)))))).))))........))))))).)))).. | 0.876 -38.40 |
| cremanei | .((((..((((((...((((.((((((..(((((....)))))..)))))).))))........))))))..)))). | 1.000 -34.90 |
| celegans | chromosome:III:5031463:5031576:-1 | Opposite_strand|Intronic_coding|R144.1|R144.1 ## R144.1|protein_coding|klp-6|klp-6 encodes a predicted monomeric kinesin and member of the UNC-104 family. [Source: WormBase] ## {SimpF: WRM065dA04 -1 fosmid,WRM0617cE05 -1 fosmid,WRM0623aF05 -1 fosmid,WRM068bC01 -1 fosmid,WRM0610cB11 -1 fosmid,WRM0624cG01 -1 fosmid} |
| cbriggsae | chromosome:chrX:20313769:20313922:-1 | Opposite_strand|Exonic_coding|NM_065481 |
| cbrenneri | chromosome:chrUn:106785266:106785352:1 | intergenic |
| cjaponica | chromosome:chrUn:12702827:12702904:-1 | intergenic |
| cremanei | chromosome:chrUn:133256206:133256359:1 | Opposite_strand|Exonic_coding|NM_065481 ## Same_strand|Intronic_coding|NM_001002694 |
| seed | -----------------GCCAAGC-------------------------------------------------------------------------------------------- | 2 | novel |
| | | | CE1 |
| | ----------------TGCCAAGCGCTACG-TCACCAGGGG--------------------------------------------------------------------------- | 24 | 2 |
| celegans | GTCGACCGAGCGTCCGTGCCAAGCGCTACG-TCACCAGGGGATAACTGTCGGAAGGC-GGTTAGTCCCGGGTGCATAAGGAGTCGTGGATGGTTCAGGACCGAAAGGTAGCAGACA | |
| cremanei | ----------------TGCCAAGCGCTGCGTTCACTAGGGGTCATCCTTCGGAAGAG-GGGCGGTCCCGGGTGCATAAGGAGCGGTGGATGGTT---------------------- | |
| cbriggsae | ----------------TGCCAAGCGCTACG-TCGCCAGGGGTTGTCTGTCGGAGGAC-GGACGGTCCCGGGCGCATAAGGAGTGGTCTA--------------------------- | |
| cbrenneri | ---------GCGTCCGTGCCAAGCGCTACG-TCGCTAGGGGTCATCAGACGGAAGTT-TGAAGGTCCCGGGCGCATAAGGAGTGGTGTATGGTTCAGG------------------ | |
| cjaponica | ----------------TGCCAAGCGCCGCG-TCGCCAGGGGCAGTCTGTCGGAAGGCTGGGCTGTCCCGGGTGCATAAGGAGCGGTGTA--------------------------- | |
| | ********** ** ** * ***** * **** * * ******** ********** ** * | |
| celegans | (((.(((...(((((..((((.(((((..( (((((.(((..((((((((....))) )))))..))).)))).))....)).)))...))))...))).))...)))....))). | 0.920 -49.10 |
| cremanei | .((((..((((((...((((.((((((..(((((....))) ))..)))))).))))........))))))..)))). | 1.000 -34.90 |
| cbriggsae | .((((....((..( (((((.(((..((((((((....))) )))))..))).)))).))..))..))))... | 0.985 -33.00 |
| cbrenneri | ....((..((((.(((((((. .((((.((((((.((((((....))) ))).)))))).))))........))))))).))))...)) | 0.999 -37.90 |
| cjaponica | ......(((((((. .((((.(((((((((((((....))).)))))))))).))))........))))))). | 1.000 -40.50 |
| seed | -----------------------------------------------------------GAGAUCA------------------------------------------ | 2 | miR-80/81/82 |
| | | | CE1 |
| | ----------------------------------------------------------AGAGATCAGGCAATAGGTTC------------------------------ | 20 | 2 |
| celegans | GTGACGATATTCAATTGCAACCTGTTGGTTGATCTCCTAC----CAAATAATGGA-TAAGAGATCAGGCAATAGGTTCAAAAGTGAATAATATTGATTTTTGAGTGAC | |
| cbriggsae | ----------------GAAACTTTGATGTTGTCATCTCA------AAATCAGTGA-GATCAGCTCA------AGGCTC------------------------------ | |
| cjaponica | ------------------GGCATTCAACTTGATCTCCTACACCTCAATTCGAGGAGTAAGAGATCAAGGGTTTGACCC------------------------------ | |
| ppacificus | -----------------CTATATTTTCTCTGATCTCTCGCTC--TGCCTGACCGG-CAAGAGATCACGGAAAATGTGA------------------------------ | |
| cremanei | -----------------TGGCTTATTGATTGGTCTCCTAC----CACTTTTTGGA-TATGAGATCATTCGATGAGCCC------------------------------ | |
| | * ** ** * * * ** *** | |
| celegans | .......((((((.(((.(((((((((.((((((((.((( ((.....))). )).)))))))).))))))))))))...))))))................... | 0.690 -33.70 |
| cbriggsae | ....((((((.((((..(((((( .......))) )))))))))) )))... | 1.000 -13.70 |
| cjaponica | ((((.....(((((((((.(((.((((.....)))).))).)))))))))....)).)). | 0.983 -25.20 |
| ppacificus | .((((((((((.((((((((..... ((((.....)) )))))))))).)))))))))). | 1.000 -24.60 |
| cremanei | .((((((((((.(((((((.((( ((.....))). )).))))))).)))))))))). | 1.000 -27.40 |
| seed | ----------------------------------------------------------------------AAGACCA---------------------------------- | 1 | novel |
| | | | CE1 |
| | ---------------------------------------------------------------------AAAGACCA--CCGGTTACACTAC------------------- | 21 | 1 |
| celegans | CGGAAAAACCATGCCTCCCAATGGTGAGTGTAACCGCACGTCTTGTTTCAAAACTCAATATATGGA--AAAAGACCA--CCGGTTACACTACATTATTGGTTGGAGTCTGA | |
| cremanei | --GTATAAAAATCTCTGAGATTTGTCCAAAACTGACTGAGTTCTGATAAAAAAATGTAT---TGGCAGAAAAGACCA-----CTTGGACCA-------------AATCTCA | |
| cbrenneri | CGG------------TCCAATTTGT---------------TCTTGTCCGGATGATCATTATCTGGC--TAAAGACCATGCAACTTGTACTA-------------------- | |
| | * * * * ** * ** * * * *** ******** ** ** * | |
| celegans | ((((.........((..(((((((((((((((((((...(((((.(((((............)))) ).))))).. .)))))))))).)))))))))..))..)))). | 0.830 -39.10 |
| cremanei | .............((((((((((((((......((...(((((...((........) )..))))).)).... .)))))).) ))))))) | 0.950 -19.40 |
| cbrenneri | .(( (.(((.(((( ((((..((((((((...)))))))). ..))))....)))).))).))). | 0.998 -15.80 |
| seed | -----------------------------GGCAGAU------------------------------------------------------------------------------------------------ | 2 | miR-72 |
| | | | CE1 |
| | ----------------------------AGGCAGAT------------CAATCAATTTTT------------------------------------------------------------------------ | 20 | 2 |
| celegans | TGTATATTGTTTAGTCCATTCAGTTTGTAGGCAGAT------------CAATCAATTTTTAGGTTTATATAAATAATCCTAAAGTCGATTGCTCTACCCACAAAAAGTAATGTTGACTTGAAGTTATGTATA | |
| cremanei | ----------------------------AGGCAGAT------------CGG--AGATCGTAGATATTCAGAAGCCAAT-----GTCACTT-CTCCATC---------------------------ACCT--- | |
| cbrenneri | TGCCGGCA--------------------AGGCAGATGCCGGTAAATGCCGGTAAAATCGCAAATTT-TACCGGTAAACTT---ACCGGTT-TTTTACC---------------------------GTCGGTA | |
| | ******** * * * * * * * * * ** * * * | |
| celegans | (((((((..((.((((((((...(((((.((.(((. (((((...(((((((.((((....)))).)))))))..))))).))).)).)))))....))))..)))).))....))))))) | 1.000 -29.80 |
| cremanei | (((..((( .(( (((..((.((((((........))) ))))).) ))))))) .))) | 1.000 -14.10 |
| cbrenneri | (((((((. .((.(((.((((((((.((((((((((((.....)))) ))))))))...)) )))))). .))).)) ))))))) | 0.999 -37.50 |
| seed | -----------------------------------------------------------------------------------GUAUUAA---------------------------------------------------- | 23 | novel |
| seed | ---------------------------------------------------------------------------------AUGUAUU------------------------------------------------------ | 7 | novel |
| seed | -------------------------------------------------------------------------------------AUUAAAC-------------------------------------------------- | 7 | novel |
| seed | ---------------------------------------------------------------------------------------UAAACGG------------------------------------------------ | 5 | novel |
| seed | ------------------------------------------------------------------------------------UAUUAAA--------------------------------------------------- | 4 | novel |
| seed | ---------------------CCGGCCC------------------------------------------------------------------------------------------------------------------ | 1 | novel |
| seed | -----------------------GGCCCU----------------U------------------------------------------------------------------------------------------------ | 1 | novel |
| seed | --------------------------------------------------------------------------------------UUAAACG------------------------------------------------- | 1 | novel |
| | | | CE1 |
| | ----------------------------------------------------------------------------------TGTATTAAACGGTA------------------AGGGCCGGC------------------- | 23 | 11 |
| | ----------------------------------------------------------------------------------TGTATTAAACGGTA------------------AGGGCCGG-------------------- | 22 | 6 |
| | ------------------------------------------------------------------------------------TATTAAACGGTA------------------AGGGCCGGCT------------------ | 22 | 4 |
| | --------------------------------------------------------------------------------------TTAAACGGTA------------------AGGGCCGGCTG----------------- | 21 | 4 |
| | ----------------------------------------------------------------------------------TGTATTAAACGGTA------------------AGGGCCG--------------------- | 21 | 3 |
| | ----------------------------------------------------------------------------------TGTATTAAACGGTA------------------AGGGCC---------------------- | 20 | 3 |
| | --------------------------------------------------------------------------------CATGTATTAAACGGTA------------------AGGGC----------------------- | 21 | 3 |
| | -----------------------------------------------------------------------------------GTATTAAACGGTA------------------AGGGCCGGC------------------- | 22 | 3 |
| | ------------------------------------------------------------------------------------TATTAAACGGTA------------------AGGGCCGGCTG----------------- | 23 | 2 |
| | --------------------------------------------------------------------------------CATGTATTAAACGGTA------------------AGGGCC---------------------- | 22 | 2 |
| | --------------------------------------------------------------------------------CATGTATTAAACGGTA------------------AGGGCCG--------------------- | 23 | 2 |
| | ----------------------CGGCCCT----------------TACCGTTTAAT-------------------------------------------------------------------------------------- | 18 | 1 |
| | -----------------------------------------------------------------------------------GTATTAAACGGTA------------------AGGGCCGGCT------------------ | 23 | 1 |
| | --------------------------------------------------------------------------------------TTAAACGGTA------------------AGGGCCGGCTGG---------------- | 22 | 1 |
| | -------------------------------------------------------------------------------------ATTAAACGGTA------------------AGGGCCGGCTGG---------------- | 23 | 1 |
| | ------------------------------------------------------------------------------------TATTAAACGGTA------------------AGGGCC---------------------- | 18 | 1 |
| | --------------------GCCGGCCCT----------------TACCGTTTAATAC------------------------------------------------------------------------------------ | 22 | 1 |
| celegans | -AAATGAATGTAAAGCCCCAGCCGGCCCT----------------TACCGTTTAATACATGTTCC---CGGTCGATGCACCATGTATTAAACGGTA------------------AGGGCCGGCTGGGGCTTTACAACATTT- | |
| cremanei | ACAGAGAACGC---GTTATATTAGGTTGTTCAGGTCATGTAAAGGTGTAATTAAATACACCGTTCGTGAATAAGGTGAAATATGTATTAAAATGCATTTTTACATGACCTGAATAAGCTCATCACTAGCTTTTTATTACTGT | |
| cbriggsae | ---------------CATTTGTTGGCGTTGGCGGT----------TGCGGTTGAAA---------------TAGTTCAAAACTGTATTAAACTCCA-------------------AGCCCAAGTG----------------- | |
| cjaponica | ---------------TGGAAACCGGTTTTTTTGT-----------AACCGGTGGAAACCGGTTTC---TACCGGTTTTCACCGGTATTAAAAAACA-----------------------------CCGGTTTTTA------- | |
| | ** * * * * * ******** * | |
| | ----- ---------------------------- -------------------- ---------------------------- --------------------------- ----- | F55F3.1.1 F55F3.1 aakb-1 |
| celegans | (((((..((((((((((((((((((((( ((((((((((((((((.... ((.....))...)))))))))))))))) ))))))))))))))))))))).))))) | 1.000 -73.00 |
| cremanei | ((((((((.(( ........((.((((((((((((((((((((((((.((.((((((...((((.........))))...)))))).)).)))))))))))))))))))))))).))........)).))))....)))) | 0.989 -46.29 |
| cbriggsae | ((((((..(((.((((.((( ((((((((((. ...))))..))))))....)))))) )))))))))) | 1.000 -18.50 |
| cjaponica | ((((((((((((((((((. .((((((((((((((((... .))))))))))))))))..))))))).) )))))))))) | 1.000 -46.10 |
| seed | -------------------------------------------------------------------------------------------------------GUAUUAA--------------------------------------------------------------- | 23 | novel |
| seed | -----------------------------------------------------------------------------------------------------AUGUAUU----------------------------------------------------------------- | 7 | novel |
| seed | ---------------------------------------------------------------------------------------------------------AUUAAAC------------------------------------------------------------- | 7 | novel |
| seed | -----------------------------------------------------------------------------------------------------------UAAACGG----------------------------------------------------------- | 5 | novel |
| seed | --------------------------------------------------------------------------------------------------------UAUUAAA-------------------------------------------------------------- | 4 | novel |
| seed | ----------------------------------------------------------------------------------------------------------UUAAACG------------------------------------------------------------ | 1 | novel |
| seed | -----------------------------------CCGGCCC----------------------------------------------------------------------------------------------------------------------------------- | 1 | novel |
| seed | -------------------------------------GGCCCUU--------------------------------------------------------------------------------------------------------------------------------- | 1 | novel |
| | | | CE1 |
| | ------------------------------------------------------------------------------------------------------TGTATTAAACGGTAAG-------GGCCGGC----------------------------------------- | 23 | 11 |
| | ------------------------------------------------------------------------------------------------------TGTATTAAACGGTAAG-------GGCCGG------------------------------------------ | 22 | 6 |
| | --------------------------------------------------------------------------------------------------------TATTAAACGGTAAG-------GGCCGGCT---------------------------------------- | 22 | 4 |
| | ----------------------------------------------------------------------------------------------------------TTAAACGGTAAG-------GGCCGGCTG--------------------------------------- | 21 | 4 |
| | ------------------------------------------------------------------------------------------------------TGTATTAAACGGTAAG-------GGCCG------------------------------------------- | 21 | 3 |
| | -------------------------------------------------------------------------------------------------------GTATTAAACGGTAAG-------GGCCGGC----------------------------------------- | 22 | 3 |
| | ------------------------------------------------------------------------------------------------------TGTATTAAACGGTAAG-------GGCC-------------------------------------------- | 20 | 3 |
| | ----------------------------------------------------------------------------------------------------CATGTATTAAACGGTAAG-------GGC--------------------------------------------- | 21 | 3 |
| | ----------------------------------------------------------------------------------------------------CATGTATTAAACGGTAAG-------GGCC-------------------------------------------- | 22 | 2 |
| | ----------------------------------------------------------------------------------------------------CATGTATTAAACGGTAAG-------GGCCG------------------------------------------- | 23 | 2 |
| | --------------------------------------------------------------------------------------------------------TATTAAACGGTAAG-------GGCCGGCTG--------------------------------------- | 23 | 2 |
| | ---------------------------------------------------------------------------------------------------------ATTAAACGGTAAG-------GGCCGGCTGG-------------------------------------- | 23 | 1 |
| | ------------------------------------CGGCCCTT------ACCGT----------------TTAAT------------------------------------------------------------------------------------------------- | 18 | 1 |
| | --------------------------------------------------------------------------------------------------------TATTAAACGGTAAG-------GGCC-------------------------------------------- | 18 | 1 |
| | -------------------------------------------------------------------------------------------------------GTATTAAACGGTAAG-------GGCCGGCT---------------------------------------- | 23 | 1 |
| | ----------------------------------------------------------------------------------------------------------TTAAACGGTAAG-------GGCCGGCTGG-------------------------------------- | 22 | 1 |
| | ----------------------------------GCCGGCCCTT------ACCGT----------------TTAATAC----------------------------------------------------------------------------------------------- | 22 | 1 |
| celegans | ---------ATTTAGGAAATGTTGTAAAGCCCCAGCCGGCCCTT------ACCGT----------------TTAATACATGGTGCATCGACCGGG---AACATGTATTAAACGGTAAG-------GGCCGGCTGGGGCTTTACATTCATTTATTGTTAGAA------------ | |
| cremanei | TTGAGTCTTACAGAGAACGCGTTAT--------ATTAGGTTGTT------CAGGTCATGTAAAGGTGTAATTAAATACACCGTTCGTGAATAAGGTGAAATATGTATTAAAATGCATTTTTACATGACCTGAATAAGCTCATCACTAGCTTTTTATTACTGTTTTAGACTTAA | |
| cbriggsae | ---------------CATTTGTTGG--------CGTTGGCGGTT------GCGGT-------------------------------TGAAATAGTTCAAAACTGTATTAAACTCCAAGCCCAAGTG----------------------------------------------- | |
| cjaponica | ----------------ACCGGTGGA--------AACCGGTTTTTTTGTAACCGGT-------------------GGAAACCGGTT-TCTACCGGTTTTCACCGGTATTAAAAAACA-----------------------------CCGGTTTTTATCGGT------------- | |
| | * ** ** ** ** * * * * ******** * | |
| | +++++ +++++++++++++++++++++++++++++++++++ +++++ ++++++++++++++++++++++++ ++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++ +++++ | F55F3.1.1 F55F3.1 aakb-1 |
| celegans | .(((((.(((((.(((((((((((((((((((((( ((((( ((((((((((.....((....)). ..)))))))))))))))))) )))))))))))))))))))..)))))....))))). | 1.000 -77.60 |
| cremanei | .(((((((.((((((((.((..... ...((.((((( (((((((((((((((((((.((.((((((...((((.........))))...)))))).)).)))))))))))))))))))))))).))........)).))))....))))...))))))). | 0.989 -55.69 |
| cbriggsae | ((((((..(( (.((((.(((( ((((( ((((....))))..))))))....)))))))))))))))) | 1.000 -18.50 |
| cjaponica | ((((((((( ((((((((((((((..(((((( ((((((((((. ...))))))))))))))))..))))))).) ))))))))))))))) | 1.000 -56.90 |