| seed | -----------------------------------------------------------GAGAUCA------------------------------------------ | 2 | miR-80/81/82 |
| | | | CE1 |
| | ----------------------------------------------------------AGAGATCAGGCAATAGGTTC------------------------------ | 20 | 2 |
| celegans | GTGACGATATTCAATTGCAACCTGTTGGTTGATCTCCTAC----CAAATAATGGA-TAAGAGATCAGGCAATAGGTTCAAAAGTGAATAATATTGATTTTTGAGTGAC | |
| cbriggsae | ----------------GAAACTTTGATGTTGTCATCTCA------AAATCAGTGA-GATCAGCTCA------AGGCTC------------------------------ | |
| cjaponica | ------------------GGCATTCAACTTGATCTCCTACACCTCAATTCGAGGAGTAAGAGATCAAGGGTTTGACCC------------------------------ | |
| ppacificus | -----------------CTATATTTTCTCTGATCTCTCGCTC--TGCCTGACCGG-CAAGAGATCACGGAAAATGTGA------------------------------ | |
| cremanei | -----------------TGGCTTATTGATTGGTCTCCTAC----CACTTTTTGGA-TATGAGATCATTCGATGAGCCC------------------------------ | |
| | * ** ** * * * ** *** | |
| celegans | .......((((((.(((.(((((((((.((((((((.((( ((.....))). )).)))))))).))))))))))))...))))))................... | 0.690 -33.70 |
| cbriggsae | ....((((((.((((..(((((( .......))) )))))))))) )))... | 1.000 -13.70 |
| cjaponica | ((((.....(((((((((.(((.((((.....)))).))).)))))))))....)).)). | 0.983 -25.20 |
| ppacificus | .((((((((((.((((((((..... ((((.....)) )))))))))).)))))))))). | 1.000 -24.60 |
| cremanei | .((((((((((.(((((((.((( ((.....))). )).))))))).)))))))))). | 1.000 -27.40 |