| seed | --------------------------------------------------------------------------------ACACGUG--------------------------------------------------- | 5 | miR-248 |
| seed | -------------------------------------------------------------------------------UACACGU---------------------------------------------------- | 3 | novel |
| | | | CE1 |
| | -------------------------------------------------------------------------------TACACGTGCACGGATAACGCTC------------------------------------- | 22 | 5 |
| | ------------------------------------------------------------------------------ATACACGTGCACGGATAACGCTC------------------------------------- | 23 | 2 |
| | ------------------------------------------------------------------------------ATACACGTGCACGGATAACGCT-------------------------------------- | 22 | 1 |
| cel-miR-248 | ------------------------------------------------------------------------------ATACACGTGCACGGATAACGCTCA------------------------------------ | 24 | - |
| celegans | -----------TTTCCCGGCT-----GCAACTACGGTAAGCGGTA--TCCAGCCGATGTTTTCAATACTGCAT-TTGAATACACGTGCACGGATAACGCTCATTGTTTTTCGCATGC--------------------- | |
| cbriggsae | -----------TTTTATTGCAAACTGATATTCACGATAAGCGCTA--TCCTTCCGTTGTATTCAAGCTTGGTTGTCGAGTACACGTGCTCGGATAACGCTCATCGAGTCTGATCGGTTATGTTGGTAAAG-------- | |
| cjaponica | ------------------GCT-----TCCATTACGATTAGCGCTA--TCCAGCCGAAGTATTCTAGAAAAGAT-TCGAGTACACGTGCACGGATAGTGCTCATTGTTTTTGGAGAGC-----------ACGAAATTCA | |
| cbrenneri | CTTCTGGTATTTTTCTTGGCA-----GTTATCACGATCAGCGCTA--TCCAGCCGTTGTAATCAAGAACGGAGGTTGACTACACGTGCACGGATAACGCTCATTGTCATAGGTTGCC---ATTTTTAAAGTTAAGAAG | |
| ppacificus | -------------------GA-----TCGTTCTCGATGAGTGATACTTCCCACAGT-----------------------TACACGTGCACCGACAGCGGTC------------------------------------- | |
| cremanei | ATTTGCTAGTATTTTTTGGCA-----GAGATTACGATTAGCGATA--TCCAGCCGTTGTATTCAATAGCGCAT-TTGAGTACACGTGCACGGATA-CGCTCATCGTTTTTGTATTGCCACTTCGATTGAGTAAGT--- | |
| | ** * ** * ** *** * * ********* * ** * * ** | |
| celegans | .......((( ((((..(((((.((((.(( (((.((((.(((.(((((........ ))))).))))).))..))))).)))).)))))..)).))).)) | 1.000 -29.60 |
| cbriggsae | .((((((((((((((((.....((((.((((.(( (((...((.(((((((..((......)).))))))))).....))))).)))).))))......))))))).))).)))))). | 0.942 -33.10 |
| cjaponica | ((( ((((..(((((.((((((( (((.((((..((((((..(((....) )))))))).)).))..)))))))))).)))))...)))).))) .......... | 0.944 -37.60 |
| cbrenneri | (((((...(((((...((((( ..(((.(((((.((((.(( (((.((((.((((.((((.........)))).)))))).))..))))).)))).))))).)))...)))) ).....)))))..))))) | 0.995 -37.80 |
| ppacificus | (( (((((.(((.((.(((..(((......))) ..)))...)).))).))))))) | 0.994 -15.40 |
| cremanei | (((((((.........((((( (.((..(((((.((((.(( (((.((((.(((((((((........ ))))))))))).))..))))) )))).)))))..))...)))))).........))))))) | 0.999 -44.37 |
| celegans | chromosome:X:2262367:2262464:-1 | intergenic ## {SimpF: WRM0638dD08 -1 fosmid,WRM0641cB06 -1 fosmid,WRM0631cG01 -1 fosmid,WRM0617dB01 -1 fosmid,WRM0625bA05 -1 fosmid,WRM0620aC04 -1 fosmid} ## {MIR: cel-mir-248} |
| cbriggsae | chromosome:chrX:4610288:4610404:1 | Same_strand|Intronic_coding|NM_001087279 ## Opposite_strand|Intronic_coding|NM_001046332 ## {MIR: cbr-mir-248} |
| cjaponica | chromosome:chrUn:6737767:6737867:-1 | intergenic |
| cbrenneri | chromosome:chrUn:1122535:1122662:1 | Opposite_strand|Intronic_coding|NM_001107657 |
| ppacificus | chromosome:chrUn:145903676:145903813:1 | Same_strand|Intronic_coding|NM_001110778 ## Opposite_strand|Intronic_coding|NM_001085507 |
| cremanei | chromosome:chrUn:103926403:103926528:1 | intergenic |