| seed | ---------------------------------------------------------------------CUGGAAG----------------------------------- | 0 | novel |
| | | |
| cel-miR-1828 | --------------------------------------------------------------------ACTGGAAGCATTTAAGTGATAGT-------------------- | 23 |
| celegans | -----------------------GATCACTTTTATCGGTTCCGGTCCCTCTGCAAAAAAG-----TGGACTGGAAGCATTTAAGTGATAGT-------------------- | |
| cremanei | CGGGGACGACGTGCGGGTCTCGTGGCGGCTTTCTACCGTAC---TTCACTCATAAAAA--------GTTCTGGAAGTACAGTAGTCGCAACGAGACCCGCCCACGTCTCCG | |
| cbriggsae | -----------------------GATCAAT---CATCGTGCCGATTGACCTGAAGCCAAAACTTTTGGACTGGAAGA--TGAAGCTTGGTC-------------------- | |
| cjaponica | --GAACCCGAGAGCTTTCTGGCCGGCTACTTTTCATGCTTCCTGTCCACCGTTTATCA--------GAACTGGAAGCATTGAAGTGGCGGCGCCTGAATGTTTATTGGTTT | |
| | * * * * * * * ******* ** | |
| | +++++ +++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++ +++++ | T22A3.5 T22A3.5 pash-1 |
| celegans | .(((((((..((.(.(((((((((..((.......)) .))))))))).)))..)))))))... | 1.000 -25.10 |
| cremanei | ((((((((....(((((((((((.((((((....((.(((( ((((((.......) ))....))))))).)))))))).)))))))))))...)))))))) | 1.000 -53.30 |
| cbriggsae | ((((((( ((((...(((.....((.((((......)))).))..)))..)) )))...)))))) | 0.964 -14.50 |
| cjaponica | (((((...((((.(((.(((..((((((((..((((((((..((............ ))...)))))))).))))))))...))).))).))))...))))) | 1.000 -35.70 |
| celegans | chromosome:I:10600452:10600514:1 | Same_strand|Intronic_coding|T22A3.5|T22A3.5 ## T22A3.5|protein_coding|pash-1|pash-1 encodes an RNA-binding protein that is orthologous to Drosophila Pasha and mammalian DGCR8. pash-1 activity is required for processing of primary miRNA transripts (pri-miRNAs), such as that of let-7, to generate pre-miRNAs that will then be processed by DCR-1 to generate mature miRNAs. accordingly, pash-1 mutants show defects in let-7-mediated developmental processes, namely the transition from late larval to adult cell fates. [Source: WormBase] ## {SimpF: WRM0621aA07 1 fosmid,WRM0630aE12 1 fosmid} ## {MIR: cel-mir-1828} |
| cremanei | chromosome:chrUn:23148206:23148305:1 | intergenic |
| cbriggsae | chromosome:chrV_random:248632:248734:-1 | Same_strand|Intronic_coding|NM_072444 ## Opposite_strand|Intronic_coding|NM_062190 ## {Repeats: Mariner21_CB -32 418 1 class=DNA} |
| cjaponica | chromosome:chrUn:74907003:74907103:-1 | Opposite_strand|Intronic_coding|NM_001017254 |