| seed | -----------------------------------------UUUGAUU---------------------------------------------------------------------------------------------------------- | 0 | novel |
| | | |
| cel-miR-1820 | ----------------------------------------TTTTGATTG-TTTTTCGATG-ATGTTC--------------------------------------------------------------------------------------- | 25 |
| celegans | ------------------TTCAAAAATTGCATTTTCCATCTTTTGATTG-TTTTTCGATG-ATGTTCGTTAAATCGGTATAAG---CGAACCATTGTAAA---CAATCAAAGAATGGAGAATCAATTTATGAT--------------------- | |
| cremanei | TCTGGTATTTTTCTGATATTTTTCTGATCTCATTTCCATTTTTTGATTG-TTATTCGATG--ATGTCGTCGAATGGAATTGT----CGAACCATTGAAAA---TAATCAAAAAATGGAGAGAGATTCAAGTTTTGAATTGGTAAGAAGTCCAGA | |
| cbriggsae | ----------------------------------------TTTTGATTGATTTTTCGGTT--TTGTTATCTATTTTCGGCAT----AGAAACTCTGAAAAACGCAATTTTAA------------------------------------------ | |
| cbrenneri | ---------------------------------CCGTTCTTTTTGATTGTTTTTACTAGG-ATCTGAATTCTTTT-----------CAGGACCTCCACAA---TAATCAGA------------------------------------------- | |
| cjaponica | GTGTCAATGCTTACTATACTCGCGGAGGCTTGTCGCCGTCTTTTGATTG-TTATTCGATG-ATGTTCGACGTTTTTGTGAATACGTCGAACCATTGAAAA---CTGTCAAAACATGACGATTGTGCCGAAATTTGTCAGGTTTGTGGCC----- | |
| ppacificus | ----------------------------------------GTTTGATTG-TTTGTCGATGCATTGTTATCAGATCACG--------AGAGACATTGAAGAGA-CAATTGAAA------------------------------------------ | |
| | ******** ** * * * * * * | |
| celegans | .(((.((((((.(((((((((..(((((((( (((..((((( ..(((((((...........)) )))))))))).))) ))))))))..))))))))))))))).))). | 1.000 -39.90 |
| cremanei | (((((..((((((((((......((((((((.((((((((((((((((( ((.((((((( ...(((.(((......))). )))..))))))))) )))))))))))))))))))))))..))......))))).)))))..))))) | 0.921 -50.00 |
| cbriggsae | ....(((((.((((((((.. ..(((.(((((.......)) )))))).))))))))..))))).... | 1.000 -11.70 |
| cbrenneri | ........((((((((((......((( .((((((.....)) )))).)))....)) )))))))) | 0.999 -15.30 |
| cjaponica | ..((((..((((((........(((..((..((((.(((.(((((((.( ((.((((((( ..(((((((((.((....)).)))))))))))))))))) ).))))))).))).)))).)).)))......)).))))...)))). | 0.930 -44.84 |
| ppacificus | .((..(((( (((.((((((..((((.........))) )....))))))..))) ))))..)). | 0.962 -14.50 |
| celegans | chromosome:IV:7767444:7767550:1 | intergenic ## {SimpF: WRM068dD06 1 fosmid,WRM067dH10 1 fosmid,WRM0640dD07 1 fosmid} ## {MIR: cel-mir-1820} |
| cremanei | chromosome:chrUn:43869115:43869258:-1 | Opposite_strand|Intronic_coding|NM_200104 |
| cbriggsae | chromosome:chrIV:13380242:13380388:1 | Same_strand|Intronic_coding|NM_067049 ## Opposite_strand|Intronic_coding|NM_064726 |
| cbrenneri | chromosome:chrUn:116745940:116746002:1 | Same_strand|UTR_coding|NM_068392 |
| cjaponica | chromosome:chrUn:64052439:64052582:1 | intergenic |
| ppacificus | chromosome:chrUn:3495593:3495739:-1 | Opposite_strand|Intronic_coding|NM_001045347 ## Same_strand|Intronic_coding|NM_001001910 |