other hairpins
novel_lenNOK_shortStem (17 loci)
block3037 [novel_lenNOK_shortStem]
Hairpin parameters
| no | 0.015 | no | no | 0.32/0.32 | 25/25/0.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 2
| 35
| 3arm
| 1
| nd
| 0.28
| 3
| 1 | 1 | na | na |
| seed | --------------------------------------------------------------------------------------------GAUCCAA------------------- | 1 | novel |
| | | | CE1 |
| | -------------------------------------------------------------------------------------------CGATCCAATGTCTTTAGATTTAATG-- | 25 | 1 |
| celegans | agcacttgatcttcgacttttggattgactcttcgagcaagcattctatattcgaaatacttccattgctttcacattccaagaagttcaaCGATCCAATGTCTTTAGATTTAATGct | |
| | ********************************************************************************************************************** | |
| | .......................................................................................................<<<<<<<<<<<<<<<<<<<<<<<<< | C16A3.8 C16A3.8 thoc-2 |
| celegans | ((((...(((((..(((..((((((((...((((((((((......(((.......)))......))))))...........)))).....)))))))).)))...)))))...)))) | 0.500 -25.20 |
| celegans | chromosome:III:6373825:6373942:-1 | Opposite_strand|Boundary_non-coding|C16A3.8|C16A3.8 ## C16A3.8|protein_coding|thoc-2|Temporarily Assigned Gene name family member (tag-213) [Source:RefSeq_peptide;Acc:NP_498392] ## {SimpF: WRM0640cG10 -1 fosmid,WRM0636aG04 -1 fosmid,WRM0622dB12 -1 fosmid,WRM0614bD12 -1 fosmid,CEOP3856 -1 Operon,C16A3.8 -1 Expression_profile} |
block3195 [novel_lenNOK_shortStem]
Hairpin parameters
| no | 0.575 | no | no | 0.31/0.32 | 22/26/0.50 | 0.0
| 2.0
| 2
| 0
| 1
| 0
| 0
| 7
| 3arm
| 1
| nd
| 0.27
| 2
| 2 | 1 | na | na |
| seed | -----------------------------------------------------------UUAGACA------------------ | 2 | novel |
| | | | CE1 |
| | ----------------------------------------------------------GTTAGACAGAGAAATTACGAAT---- | 22 | 1 |
| | ----------------------------------------------------------GTTAGACAGAGAAATTACGAATATTG | 26 | 1 |
| celegans | aataatcttaatagctccagttagattagttttcgttaccttagcttacgtgcgaaatGTTAGACAGAGAAATTACGAATATTG | |
| | ************************************************************************************ | |
| celegans | ((((.((.((((..(((..(((.(((....((((((...............)))))).))).))).)))..)))).)).)))). | 0.940 -12.26 |
| celegans | chromosome:III:9748859:9748942:-1 | intergenic ## {SimpF: WRM0611cA11 -1 fosmid,WRM0614bF09 -1 fosmid,WRM0613bB11 -1 fosmid,WRM0626aE07 -1 fosmid,WRM0611bB05 -1 fosmid,WRM0610bH10 -1 fosmid} |
block3217 [novel_lenNOK_shortStem]
Hairpin parameters
| no | 0.182 | no | no | 0.50/0.50 | 18/18/0.00 | 0.0
| 0.0
| 2
| 0
| 1
| 0
| 4
| 11
| 3arm
| 3
| nd
| 0.22
| 2
| 2 | 1 | na | na |
| seed | --------------------------------------------------UAGUGAU-------------- | 2 | novel |
| | | | CE1 |
| | -------------------------------------------------TTAGTGATTCACGAGCCG---- | 18 | 2 |
| celegans | agccgcgccacgtgcctccctgactctggatccgtttccggctcggaacTTAGTGATTCACGAGCCGgtta | |
| | *********************************************************************** | |
| celegans | (((((.((..((((..((.((((.(((((..(((....))).)))))..)))).))..)))).))))))). | 0.920 -23.00 |
block4205 [novel_lenNOK_shortStem]
Hairpin parameters
| no | 0.061 | no | no | 0.33/0.33 | 18/18/0.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 0
| 5
| 3arm
| 1
| nd
| 0.24
| 2
| 1 | 1 | na | na |
| seed | -----------------------------------AAGUUGU---------- | 1 | novel |
| | | | CE1 |
| | ----------------------------------TAAGTTGTCCAAAGGTTT | 18 | 1 |
| celegans | gacttgaaggtacaagtttccgtaaaaaatatgaTAAGTTGTCCAAAGGTTT | |
| | **************************************************** | |
| celegans | (((((...((.((((.((..((((.....))))..)).))))))..))))). | 1.000 -10.10 |
| celegans | chromosome:IV:5203293:5203344:-1 | intergenic ## {SimpF: WRM0623dD08 -1 fosmid,WRM0616bF04 -1 fosmid,WRM0632cH10 -1 fosmid,WRM062bD12 -1 fosmid,WRM067dF01 -1 fosmid,WRM069cD11 -1 fosmid} |
block4323 [novel_lenNOK_shortStem]
Hairpin parameters
| no | 0.227 | no | no | 0.37/0.37 | 19/19/0.00 | 0.0
| 0.0
| 2
| 0
| 1
| 0
| 0
| 3
| 3arm
| 1
| nd
| 0.28
| 2
| 2 | 1 | na | na |
| seed | -------------------------------------AGUCAUA----------- | 2 | novel |
| | | | CE1 |
| | ------------------------------------TAGTCATAGGGGTATATCT | 19 | 2 |
| celegans | aggatttattttgaattgaacttcattttaagttgaTAGTCATAGGGGTATATCT | |
| | ******************************************************* | |
| | +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | C43G2.2 C43G2.2 C43G2.2 |
| celegans | .((((.((((((....(((...(((........)))...)))..)))))).)))) | 0.990 -8.40 |
| celegans | chromosome:IV:6567474:6567528:-1 | Same_strand|Intronic_coding|C43G2.2|C43G2.2 ## C43G2.2|protein_coding|C43G2.2|C43G2.2 [Source:RefSeq_peptide;Acc:NP_501001] ## {SimpF: WRM0625dB01 -1 fosmid,WRM0631dD07 -1 fosmid} |
block4448 [novel_lenNOK_shortStem]
Hairpin parameters
| no | 0.094 | no | no | 0.42/0.42 | 19/19/0.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 1
| 7
| 3arm
| 1
| nd
| 0.26
| 2
| 1 | 1 | na | na |
| seed | ----------------------------------------------GCGAAAA------------ | 1 | novel |
| | | | CE1 |
| | ---------------------------------------------TGCGAAAATATAGTGTGGC- | 19 | 1 |
| celegans | gtttcattatattcatttaagaggaacgtggaaatagtcgttcaaTGCGAAAATATAGTGTGGCa | |
| | ***************************************************************** | |
| celegans | ((..(((((((((..(((.....(((((..........))))).....))))))))))))..)). | 0.910 -13.10 |
| celegans | chromosome:IV:9160443:9160507:-1 | intergenic ## {SimpF: WRM0611cD03 -1 fosmid,WRM0612cA03 -1 fosmid,WRM0618bC10 -1 fosmid,WRM063dB02 -1 fosmid,WRM0610bB03 -1 fosmid,WRM0639dG07 -1 fosmid} |
block5025 [novel_lenNOK_shortStem]
Hairpin parameters
| no | 0.336 | no | no | 0.21/0.21 | 19/19/0.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 1
| 22
| 3arm
| 1
| nd
| 0.11
| 1
| 1 | 1 | na | na |
| seed | -----------------------------------------------------------------------UAAAUUU------------ | 1 | novel |
| | | | CE1 |
| | ----------------------------------------------------------------------TTAAATTTATTGATCTCAG- | 19 | 1 |
| celegans | atttgagcacaaaatctataaaaattgtttcatggtgttcatttattggaactgttagcatcaacatgaaTTAAATTTATTGATCTCAGa | |
| | ****************************************************************************************** | |
| celegans | .((((((......(((.(((((..(((.((((((..((((........))))............)))))).))).))))).))))))))) | 0.640 -12.14 |
| celegans | chromosome:IV:15981135:15981224:-1 | intergenic ## {SimpF: WRM0612dA05 -1 fosmid,WRM065bD04 -1 fosmid,WRM0628dG10 -1 fosmid,WRM0615dA03 -1 fosmid,WRM0636cH06 -1 fosmid} |
block5645 [novel_lenNOK_shortStem]
Hairpin parameters
| no | 0.183 | no | no | 0.28/0.28 | 18/18/0.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 0
| 12
| 3arm
| 1
| nd
| 0.29
| 3
| 1 | 1 | na | na |
| seed | ---------------------------------------------------UUUUGUG---------- | 1 | novel |
| | | | CE1 |
| | --------------------------------------------------TTTTTGTGTGTCCATTTT | 18 | 1 |
| celegans | gagaattgatattggtttttgagagaaaaaaaacgaagttttctttccaaTTTTTGTGTGTCCATTTT | |
| | ******************************************************************** | |
| celegans | .(((((.(((((.((..((.(((((((((.........))))))))).))..))...))))).))))) | 0.990 -11.30 |
block5841 [novel_lenNOK_shortStem]
Hairpin parameters
| no | 0.210 | no | no | 0.33/0.35 | 18/20/0.50 | 0.0
| 1.0
| 2
| 0
| 1
| 0
| 1
| 36
| 5arm
| 2
| nd
| 0.15
| 1
| 2 | 1 | na | na |
| seed | --AUUGGAU--------------------------------------------------------------------------------------------------------------- | 2 | novel |
| | | | CE1 |
| | -TATTGGATTTAGATCTGG----------------------------------------------------------------------------------------------------- | 18 | 1 |
| | -TATTGGATTTAGATCTGGAG--------------------------------------------------------------------------------------------------- | 20 | 1 |
| celegans | tTATTGGATTTAGATCTGGAGagaacattgttttgaaataaactgacaacttggatgctaaaatcatctgagaaaattataaattttcgaaaaaaaaattttcaaagtcaaaagttggta | |
| | ************************************************************************************************************************ | |
| celegans | .((((((.(((.(((.((((((........((((((((...........((..((((.......))))..))............))))))))......))))))..))).))).)))))) | 0.400 -16.44 |
| celegans | chromosome:IV:13651721:13651840:1 | intergenic ## {SimpF: WRM067bD01 1 fosmid,WRM065cG01 1 fosmid,WRM0636aH06 1 fosmid,WRM0634dB07 1 fosmid,WRM0633dA12 1 fosmid} |
block5885 [novel_lenNOK_shortStem]
Hairpin parameters
| no | 0.634 | no | no | 0.53/0.55 | 19/20/0.50 | 0.0
| 0.5
| 2
| 0
| 1
| 0
| 0
| 16
| 3arm
| 1
| nd
| 0.26
| 1
| 2 | 1 | na | na |
| seed | -------------------------------------------------------UGAUAUA------------ | 2 | novel |
| | | | CE1 |
| | ------------------------------------------------------CTGATATAATGGCGCCGAC- | 19 | 1 |
| | ------------------------------------------------------CTGATATAATGGCGCCGACG | 20 | 1 |
| celegans | gtggttcactgtttcagcatcgtgttatttatgcctttgtattttacgtttcaaCTGATATAATGGCGCCGACG | |
| | ************************************************************************** | |
| | ------------------------------------------------------------------------------------ | Y37A1B.10 Y37A1B.10 srw-63 |
| celegans | ((((((((.(((.((((...((((......((((....))))..))))......)))).))).))).))).)). | 0.630 -12.00 |
| celegans | chromosome:IV:14014808:14014881:1 | Opposite_strand|Intronic_coding|Y37A1B.10|Y37A1B.10 ## Y37A1B.10|protein_coding|srw-63|Serpentine Receptor, class W family member (srw-63) [Source:RefSeq_peptide;Acc:NP_502686] ## {SimpF: WRM0634bF10 1 fosmid,WRM0631dC06 1 fosmid,WRM0619dE12 1 fosmid,WRM067bC04 1 fosmid} |