| seed | ------------------------------------AAGUGAA---------------------------------------------------------------------------------------------------- | 3759 | miR-785/86 |
| seed | ----------------------------------------GAAUGCU------------------------------------------------------------------------------------------------ | 25 | novel |
| seed | -------------------------------------AGUGAAU--------------------------------------------------------------------------------------------------- | 18 | novel |
| | | | CE1 |
| cel-miR-86 | -----------------------------------TAAGTGAATGCTTTGCCACAGTC------------------------------------------------------------------------------------- | 23 | 3157 |
| | -----------------------------------TAAGTGAATGCTTTGCCACAGTCT------------------------------------------------------------------------------------ | 24 | 306 |
| | -----------------------------------TAAGTGAATGCTTTGCCACAGT-------------------------------------------------------------------------------------- | 22 | 168 |
| | -----------------------------------TAAGTGAATGCTTTGCCAC----------------------------------------------------------------------------------------- | 19 | 90 |
| | ---------------------------------------TGAATGCTTTGCCACAGTC------------------------------------------------------------------------------------- | 19 | 22 |
| | -----------------------------------TAAGTGAATGCTTTGCCACAGTCTT----------------------------------------------------------------------------------- | 25 | 20 |
| | ------------------------------------AAGTGAATGCTTTGCCACAGTC------------------------------------------------------------------------------------- | 22 | 17 |
| | -----------------------------------TAAGTGAATGCTTTGCCACAG--------------------------------------------------------------------------------------- | 21 | 14 |
| | -----------------------------------TAAGTGAATGCTTTGCCACA---------------------------------------------------------------------------------------- | 20 | 4 |
| | ---------------------------------------TGAATGCTTTGCCACAGTCT------------------------------------------------------------------------------------ | 20 | 3 |
| | ------------------------------------AAGTGAATGCTTTGCCACAGTCT------------------------------------------------------------------------------------ | 23 | 1 |
| celegans | --------------------CGTGTCCACGCCGTCTAAGTGAATGCTTTGCCACAGTCTT-CGATGTT-CTGAAA--TGAAGCCTGGGCTCAGATTCGCTT-AGGCCGGAGTTTGACACGGCA-------------------- | |
| cbriggsae | -CCCTTCCTCTTCAACAAACCGAGTCAATGCCGTTTAAGTGAATGCTTTGCCACAGTCTT-CGATCAT-GTCACA--TGAAGCCTGGGCTTAGATTCACTT-AGGCCGGCGTTCCTTGACTCAGCCTTTTTTTCTTCTTGGG- | |
| cjaponica | -----------------------------------TAAGTGAATGCTTTGCCACAGTCTTCCGATCTCTGTCGAATGTGAAGCCTGGGTCGAGATTCGCTT-A---------------------------------------- | |
| cbrenneri | -CCCCTTTTTAAAAATACAACGAGTCGGCGCCGTCTAAGTGAATGCTTTGCCACAGTCTT-CGACCAT-GTCAAA--GGAAGCCTGGGCTCAGATTCGCTT-AGGCCGGCGTTCGACACGTTTCTTTGTGGGCTGCTTTGGGG | |
| ppacificus | -----CATGCCTCGATATTAGAATTCGGTCCCAAGCAAGTGAATGTCCGCACAGCGCATC-CACTAGTAGTCACA---GTGGCATCGCCGTCCATTCCTTTCACTCCTCCGTTTC---------------------------- | |
| cremanei | TCCCATACTTTTCAA----ACGAGTCGGCGCCGTCTAAGTGAATGCTTTGCCACAGTCTT-CGACCAT-GTCAAA--TGAAGCCTGGGCTAAGATTCGCTT-AGGCCGGCGTTTTTCGACACGGATCTTCAACTTTGGTGA-- | |
| | ********* ** * * * * * * ** * * **** ** * | |
| | +++++ ++++++++++++++++++++++++++++++++++++++++ +++++++ ++++++ ++++++++++++++++++++++++ +++++++++++++++++++++ +++++ | Y56A3A.7b Y56A3A.7 Y56A3A.7 |
| | +++++ ++++++++++++++++++++++++++++++++++++++++ +++++++ ++++++ ++++++++++++++++++++++++ +++++++++++++++++++++ +++++ | Y56A3A.7a Y56A3A.7 Y56A3A.7 |
| celegans | ((((((.((.((((((((((((((.((..(((.(((.((( ((.(... ....). ))))).))))))..)))))))))) ))).))).))..))))))... | 1.000 -42.60 |
| cbriggsae | (((.................(((((((((((((((((((((((.((..(((.(((.((( ((..... ...... ))))).))))))..)))))))))) )))).)))))....)))))).................))) | 0.842 -45.18 |
| cjaponica | (((((((((.(((.(((.(((.((((((.((......)).)).)))).)))))).))))))))))) ) | 1.000 -24.50 |
| cbrenneri | ((((..........(((((((.(((((((((((((((((((((.((..(((.(((.((( ((((... )))... .)))).))))))..)))))))))) )))).))))).)))).))).....)))).........)))) | 0.824 -55.61 |
| ppacificus | ...............(((..(((........(((.(((((..((....(((.((( ((((.((....))) )))).)))))))..))))))))........))).))) | 0.903 -21.99 |
| cremanei | (((((.......... .((.(((((((((((((((((((((.(((.(((.(((.((( ((((... )))... .)))).)))))).))))))))))) )))).)))))....)))).))............))).)) | 0.908 -49.00 |
| celegans | chromosome:III:11936518:11936615:-1 | Same_strand|Intronic_coding|Y56A3A.7a|Y56A3A.7 ## Y56A3A.7|protein_coding|Y56A3A.7|Y56A3A.7 [Source:RefSeq_peptide;Acc:NP_499557] ## {SimpF: CEOP3841 1 Operon,WRM0624cH06 -1 fosmid} ## {MIR: cel-mir-86} |
| cbriggsae | chromosome:chrIII:4132883:4133018:-1 | Same_strand|Intronic_coding|NM_177732 ## Opposite_strand|Intronic_coding|NM_001043354 ## {MIR: cbr-mir-86} |
| cjaponica | chromosome:chrUn:58779718:58779855:1 | intergenic |
| cbrenneri | chromosome:chrUn:102433287:102433423:1 | Same_strand|Intronic_coding|NM_211666 |
| ppacificus | chromosome:chrUn:50014221:50014326:1 | Opposite_strand|Intronic_coding|NM_001086814 |
| cremanei | chromosome:chrUn:4696101:4696232:1 | intergenic |