other hairpins
block2684 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.129 | no | no | 0.42/0.42 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 11 | 15 | 3arm | 2 | nd | 0.21 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------CAGACUG---------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| --------------------------------------------------------------------ACAGACTGAGGATAAACGA----------- | 19 | 1 | |
| celegans | tttgctgtcattgtttcgaaattctaaatctgtatcataatggtagtttcgttaaacttgcccgttcgACAGACTGAGGATAAACGAagacgtcgaga | ||
| ************************************************************************************************** | |||
| celegans | ((((.((((.((((((....(((((...(((((.....(((((.(((((....)))))...)))))..)))))...))))))))))).)))).)))). | 1.000 -22.80 |
| celegans | chromosome:II:13038817:13038914:1 | intergenic ## {SimpF: WRM065aF11 1 fosmid} |
block2829 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.235 | no | no | 0.26/0.26 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 19 | 4 | 5arm | 1 | nd | 0.26 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------CAUGAAU------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------------------CCATGAATTTTTGATGATT------------------------------------------------------------- | 19 | 1 | |
| celegans | cctgaaaaataaatagattCCATGAATTTTTGATGATTttcttgcatttttcactagaaaatcttccgttttcccagaaattttgaattttttagccag | ||
| *************************************************************************************************** | |||
| <<<<<<------------------------------------------------------------------------------------------------------- | Y71H2AM.4.2 Y71H2AM.4 Y71H2AM.4 | ||
| <<<<<<------------------------------------------------------------------------------------------------------- | Y71H2AM.4.1 Y71H2AM.4 Y71H2AM.4 | ||
| celegans | .(((.....((((.((((((...(((((((((..((((((((.............))))))))...........))))))))).))))))))))..))) | 0.850 -13.74 |
| celegans | chromosome:III:2787782:2787880:-1 | Opposite_strand|Intronic_coding|Y71H2AM.4.2|Y71H2AM.4 ## Y71H2AM.4|protein_coding|Y71H2AM.4|Y71H2AM.4 [Source:RefSeq_peptide;Acc:NP_497619] ## {SimpF: Y71H2_388.D -1 Expression_profile,CEOP3084 -1 Operon} |
block3497 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.128 | no | no | 0.31/0.33 | 21/26/0.33 | 0.0 | 1.7 | 3 | 0 | 1 | 0 | 10 | 7 | 5arm | 1 | nd | 0.14 | 1 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------UCAAUGC------------------------------------------------------------------------------ | 3 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------GTCAATGCCATTTTCTGATTATAAGT------------------------------------------------------------ | 26 | 2 | |
| ----------GTCAATGCCATTTTCTGATTA----------------------------------------------------------------- | 21 | 1 | |
| celegans | aaaaaccctaGTCAATGCCATTTTCTGATTATAAGTtacaatagagacatatttgcatttaaattattgaagatcgcttgacttattcttgttttt | ||
| ************************************************************************************************ | |||
| .......................................................................................<<<<<<<<<<<<<<<<<<< | R13G10.4 R13G10.4 R13G10.4 | ||
| celegans | ((((((...((((((.((.(((((((((((.(((((...((((......))))...))))))))))..)))))).)))))))).......)))))) | 0.970 -15.30 |
| celegans | chromosome:III:3826275:3826370:1 | intergenic ## {SimpF: WRM065cE05 1 fosmid,WRM0624bD07 1 fosmid,WRM0640dH02 1 fosmid,WRM063dB07 1 fosmid,WRM0626aB12 1 fosmid,WRM062aH09 1 fosmid,WRM0634bH05 1 fosmid,WRM0613aC06 1 fosmid} |
block3706 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.219 | no | no | 0.35/0.35 | 26/26/0.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 10 | 16 | 5arm | 2 | 58 | 0.27 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------AUGAAUG------------------------------------------------------------------------------------ | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------GATGAATGAGCGTTTTTAAAAACTCG------------------------------------------------------------------ | 26 | 2 | |
| celegans | tcatctttttGATGAATGAGCGTTTTTAAAAACTCGaaaatacttgaaatttatgagaaaatttttattcagtttagaaactaatatttttcagatggagaa | ||
| ****************************************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>> | T20B12.1 T20B12.1 T20B12.1 | ||
| celegans | ((.(((.(((((.(((((...(((((((..((((.(((.......(((((((......)))))))..))))))))))))))...))))).))))).))))). | 0.580 -15.80 |
| celegans | chromosome:III:7388495:7388596:1 | Same_strand|Intronic_coding|T20B12.1|T20B12.1 ## T20B12.1|protein_coding|T20B12.1|TPR repeat-containing protein T20B12.1. [Source:UniProtKB/Swiss-Prot;Acc:P41842] ## {SimpF: CEOP3436 1 Operon,WRM0626aC10 1 fosmid,WRM062aD02 1 fosmid,WRM066cF12 1 fosmid} |
block3971 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.105 | no | no | 0.44/0.44 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 24 | 2 | 5arm | 1 | nd | 0.28 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------CUGUGUG------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------------------------GCTGTGTGTGATTTGTCT-------------------------------------------------------- | 18 | 1 | |
| celegans | gacgctgcaaatctccacgccatgGCTGTGTGTGATTTGTCTgaaaacttaaattaaattacgcaaaaattggtgaaaaagagaaaataaataggtta | ||
| ************************************************************************************************** | |||
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<................................................................................ | Y76A2B.1 Y76A2B.1 pod-1 | ||
| celegans | (((.(((....((((..(((((......(((((((((((..(((....)))...))))))))))).....))))).....)))).......)))))). | 0.980 -19.20 |
| celegans | chromosome:III:13523951:13524048:1 | intergenic |
block3974 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.098 | no | no | 0.56/0.56 | 25/25/0.00 | 0.0 | 0.0 | 3 | 0 | 1 | 0 | 13 | 11 | 3arm | 1 | 23 | 0.28 | 3 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------------GUGUGAC------------------------------ | 3 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| --------------------------------------------------------------------------AGTGTGACATGTCGTCCAGCTGTGG------------- | 25 | 3 | |
| celegans | tcgttggatatggcccgtcaggtaggaaattttcgattttccactatttttttttctaaaatcagaaaatttgcAGTGTGACATGTCGTCCAGCTGTGGatcgtgccaaaga | ||
| **************************************************************************************************************** | |||
| >>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | T12D8.1 T12D8.1 set-16 | ||
| celegans | ((.((((.((((..(((.(((...(((......((((..((((((......((((((......)))))).....)))).))...)))))))..))))))..)))))))).)) | 0.460 -27.10 |
| celegans | chromosome:III:13644000:13644111:1 | Same_strand|Boundary_coding|T12D8.1|T12D8.1 ## T12D8.1|protein_coding|set-16|Temporarily Assigned Gene name family member (tag-350) [Source:RefSeq_peptide;Acc:NP_499819] ## {SimpF: WRM066cA03 1 fosmid,WRM0630dA02 1 fosmid,WRM0622cC11 1 fosmid,WRM0640dG12 1 fosmid,WRM0611cA01 1 fosmid,WRM0614aE06 1 fosmid} |
block4058 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.508 | no | no | 0.21/0.21 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 25 | 8 | 3arm | 1 | nd | 0.26 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------UUAUUAC------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------------------------------------------ATTATTACATTCGATCAAT------------------------- | 19 | 1 | |
| celegans | aaaataagaagagagactgatgggattgatttgaaaatattcgtgagatttgaataaaactaactggtatcttacaATTATTACATTCGATCAATaaacgattttactaaattccgattt | ||
| ************************************************************************************************************************ | |||
| celegans | .((((..(((...((...((((..(((((.(((((((((...(((((((...................)))))))...))))...))))))))))...)).))...))...)))..)))) | 0.780 -14.11 |
| celegans | chromosome:IV:2559562:2559681:-1 | intergenic ## {SimpF: WRM0616dE11 -1 fosmid} |
block4149 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.230 | no | no | 0.22/0.22 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 28 | 3 | 5arm | 3 | nd | 0.22 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------UUUUGAG------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------GTTTTGAGTTTTTTGTTT-------------------------------------------------------- | 18 | 1 | |
| celegans | gtcctaatttcgatctcagaaaatagttGTTTTGAGTTTTTTGTTTtgttttgttttacagcaataaaagtgtaaattaattgagaatttagaaacaaggat | ||
| ****************************************************************************************************** | |||
| >>>>>>>>>>>>.................................................................................................... | F29B9.10 F29B9.10 F29B9.10 | ||
| celegans | (((((..((((..(((((.......((((.((((...((((((((((((........)))).))))))))..)))).))))))))).....))))..))))) | 0.420 -17.21 |
| celegans | chromosome:IV:4659019:4659120:-1 | intergenic ## {Repeats: dust 23955 23973 0 class=dust} ## {SimpF: WRM0621cC02 -1 fosmid,WRM0627bD07 -1 fosmid,WRM0637aB09 -1 fosmid,WRM0629aB05 -1 fosmid,WRM0639aG12 -1 fosmid,WRM068dB06 -1 fosmid,F29B9.10 -1 Expression_profile,WRM065dC01 -1 fosmid,WRM0621aB11 -1 fosmid,WRM0618aF09 -1 fosmid} |
block4168 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.176 | no | no | 0.37/0.37 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 23 | 10 | 3arm | 1 | nd | 0.16 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------UAUGUAG---------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------------------------------------------------------------------TTATGTAGGGATGAATGTC----------------------- | 19 | 1 | |
| celegans | ttccgcttcatcagagctcactgattcatctcatttttataacaataagataacgtctgtttcgtagTTATGTAGGGATGAATGTCgataaggtgaagttactttggga | ||
| ************************************************************************************************************* | |||
| celegans | ((((((((((((.....((((..(((((((((.....((((((.((.(((((.....))))).)).))))))..))))))))))).))...))))))))......)))) | 0.550 -23.40 |
| celegans | chromosome:IV:4953078:4953186:-1 | intergenic |
block4330 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.688 | no | no | 0.42/0.42 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 14 | 22 | 3arm | 1 | 65 | 0.16 | 1 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------UUUGUUG------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------------------------------------------------TTTTGTTGACGTACGTGGT-------------- | 19 | 1 | |
| celegans | tggaatggagttattaaggtattcaagaaaatattttaccgtttcagcttttggtaaaaatagtggcaattttattcggtgaTTTTGTTGACGTACGTGGTaaaatacaagttct | ||
| ******************************************************************************************************************* | |||
| >>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | C01B10.10 C01B10.10 C01B10.10 | ||
| celegans | .(((((....((((((..((((((((.((((....((((((.....(((.(((.......))).))).........)))))))))).)))).)))).)))))).......))))) | 0.640 -18.74 |
| celegans | chromosome:IV:6626509:6626623:-1 | Same_strand|Intronic_coding|C01B10.10|C01B10.10 ## C01B10.10|protein_coding|C01B10.10|C01B10.10 [Source:RefSeq_peptide;Acc:NP_501021] ## {SimpF: WRM0637dD06 -1 fosmid,WRM0626aD05 -1 fosmid,C01B10.10 -1 Expression_profile,WRM0640dC01 -1 fosmid} |
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