| seed | -------------------------------------------------------------------UACAUGU------------------------------------- | 28 | miR-246 |
| seed | --------------------------------------------------------------------ACAUGUU------------------------------------ | 2 | novel |
| | | | CE1 |
| | ------------------------------------------------------------------TTACATGTTTCGGGTAGGAGCT----------------------- | 22 | 19 |
| cel-miR-246 | ------------------------------------------------------------------TTACATGTTTCGGGTAGGAGC------------------------ | 21 | 5 |
| | ------------------------------------------------------------------TTACATGTTTCGGGTAGGAG------------------------- | 20 | 2 |
| | -------------------------------------------------------------------TACATGTTTCGGGTAGGAGCT----------------------- | 21 | 2 |
| | ------------------------------------------------------------------TTACATGTTTCGGGTAGG--------------------------- | 18 | 2 |
| celegans | -ATCTGAATTATAAAACAT----CGCCTAACCGTTGTCATGTAATATTTCCCAGAGAAAATGA-TATTACATGTTTCGGGTAGGAGCTGTTCAAACTTTGGAC-------- | |
| cbriggsae | -----------------AG----CACCTGGCCAATATTATGTAATA--TCAGAAGCAAATTGATTATTACATGTATTGGGTAGGAGCT----------------------- | |
| cjaponica | TACGCGAATCGGTCAACGATGTACGCCTTTCCG---------------TCAAAGAACCATCCAGTG-TACATGT-CCGCATTCGTCAT----------------------- | |
| cbrenneri | -----------------AG----CACCTGGCCGAAATCATGTAATA--TAACAATGAGTTC---TATTACATGTTCCGGGTAGGAGCT----------------------- | |
| cremanei | -GTCCAAACAATAGAACAG----CACCTGGCCGATTTCATGTAATA--TCTGAAAAGAAAAGA-TATTACATGTATCGGGTAGGAGCTGTTTGAGTAAAGGATCTTTCGAA | |
| | * *** ** * * * ******* * * * * | |
| celegans | .((..((......((((. (.((((.(((....(((((((((((.............)) )))))))))...))).)))).).)))).....))..)). | 1.000 -25.32 |
| cbriggsae | (( (.((((.((((((.((((((((( ((((.......))))).)))))))))))))).)))).))) | 1.000 -25.60 |
| cjaponica | ...(((((((((.((....(((((((......( (......))......))) )))))). ))).))))))... | 0.997 -17.70 |
| cbrenneri | (( (.((((.(((.((.((((((((( .(((.....))). ))))))))))).))).)))).))) | 1.000 -25.30 |
| cremanei | ((((........(((((( (.((((.(((((..((((((((( (((.........))) ))))))))).))))).)))).))))))).......))))........ | 0.984 -42.56 |
| celegans | chromosome:IV:10940104:10940200:1 | intergenic ## {SimpF: WRM0618aB12 1 fosmid,WRM063cG12 1 fosmid} ## {MIR: cel-mir-246} |
| cbriggsae | chromosome:chrIV:5799902:5800038:-1 | Opposite_strand|Intronic_coding|NM_001111130 ## Same_strand|Intronic_coding|NM_001128722 ## {MIR: cbr-mir-246} |
| cjaponica | chromosome:chrUn:92772728:92772864:1 | Opposite_strand|Exonic_coding|NM_064652 |
| cbrenneri | chromosome:chrUn:102791807:102791943:-1 | intergenic |
| cremanei | chromosome:chrUn:56770618:56770720:1 | Same_strand|Intronic_coding|NM_069625 |