other hairpins
block56 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.133 | no | no | 0.32/0.32 | 28/28/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 20 | 2 | 3arm | 1 | nd | 0.11 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------UUUGAAC---------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------------------------------------TTTTGAACGTGAATAAGCTAGGAATTGT-------------------- | 28 | 1 | |
| celegans | ttttatgttttccgagtttttaaatggcaatttttagactttttggtgaataatttagatttatatgagaTTTTGAACGTGAATAAGCTAGGAATTGTtaaatttggaggttttaggg | ||
| ********************************************************************************************************************** | |||
| celegans | .((((...((((((((((......(((((((((((((.(((.((..((.....((((((.((......)).))))))))..)).))))))))))))))))))))))))))...)))). | 0.920 -21.20 |
| celegans | chromosome:I:1030507:1030624:-1 | intergenic ## {SimpF: WRM0614aH12 1 fosmid,Y34D9A_151.B -1 Expression_profile} |
block72 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.545 | no | no | 0.50/0.50 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 11 | 12 | 5arm | 2 | nd | 0.28 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------GUCUCGC---------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------GGTCTCGCAGCGATTTTT------------------------------------------------------ | 18 | 1 | |
| celegans | gaatactggtgGGTCTCGCAGCGATTTTTgaattttttaaataatttttttttttgaaaaattgtcgatttttatgaaattcc | ||
| *********************************************************************************** | |||
| celegans | ((((....(((((..(((..(((((((((.((......(((....))).....)).))))))))))))..)))))...)))). | 0.410 -10.00 |
| celegans | chromosome:I:1621125:1621207:-1 | intergenic ## {Repeats: dust 46431 46435 0 class=dust} |
block84 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.208 | no | no | 0.37/0.37 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 23 | 8 | 3arm | 1 | nd | 0.21 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------GGUUUUU---------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------------------------------------------------------------TGGTTTTTCGCTAGGTTTT----------------------- | 19 | 1 | |
| celegans | tcagattttgggagacacactcactgaatttttgcgaatattttaggatttctttttgttctcaaTGGTTTTTCGCTAGGTTTTaatgaaaaaagtgtgtgatctgg | ||
| *********************************************************************************************************** | |||
| celegans | .((((((.......(((((((((.((((.(((.(((((.(((..(((((........)))))....)))..))))).))).)))).))).....)))))))))))). | 0.920 -21.51 |
| celegans | chromosome:I:2070767:2070873:-1 | intergenic |
block426 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.024 | no | no | 0.38/0.38 | 26/26/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 6 | 12 | 3arm | 2 | nd | 0.19 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------CUCUUUA------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------------------------------GCTCTTTATTGAGTGTTCAAATCAGG------ | 26 | 1 | |
| celegans | caattccaatgatatcttgaacgtccattgatagcgtcgatagtcgcaaacttgcagttgacaaGCTCTTTATTGAGTGTTCAAATCAGGaaatga | ||
| ************************************************************************************************ | |||
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<............................................. | K07A1.5 K07A1.5 K07A1.5 | ||
| celegans | ((.((((..((((...(((((((..((.(((.(((((((((....(((....))).))))))..)))..))).))..))))))))))))))).)). | 0.980 -24.70 |
| celegans | chromosome:I:9590546:9590641:-1 | intergenic ## {SimpF: WRM0629cA06 -1 fosmid,WRM0634aA12 -1 fosmid,WRM0639cA02 -1 fosmid,WRM065bH01 -1 fosmid,K07A1.5 -1 Expression_profile,WRM0623cA08 -1 fosmid} |
block1077 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.024 | no | no | 0.38/0.38 | 26/26/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 6 | 12 | 3arm | 2 | nd | 0.19 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------CUCUUUA------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------------------------------GCTCTTTATTGAGTGTTCAAATCAGG------ | 26 | 1 | |
| celegans | caattccaatgatatcttgaacgtccattgatagcgtcgatagtcgcaaacttgcagttgacaaGCTCTTTATTGAGTGTTCAAATCAGGaaatga | ||
| ************************************************************************************************ | |||
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<......................................................................... | C04F12.6 C04F12.6 C04F12.6 | ||
| celegans | ((.((((..((((...(((((((..((.(((.(((((((((....(((....))).))))))..)))..))).))..))))))))))))))).)). | 0.980 -24.70 |
| celegans | chromosome:I:9693744:9693839:1 | intergenic ## {SimpF: WRM0630dC04 1 fosmid,WRM0612dG10 1 fosmid,WRM0637bB03 1 fosmid,WRM064dE10 1 fosmid,WRM0619bF10 1 fosmid} |
block1261 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.165 | no | no | 0.42/0.42 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 9 | 6 | 3arm | 1 | nd | 0.11 | 1 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------CUUGCAG-------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------------------------GCTTGCAGTCGAAAAATTG--------- | 19 | 1 | |
| celegans | ctgtacttttagtagttttcaagctgcaaaaacttaaaattataactcacatttttacGCTTGCAGTCGAAAAATTGaaaaatagt | ||
| ************************************************************************************** | |||
| celegans | ((((..(((((((..(((((..(((((((.....(((((.............)))))...))))))).)))))))))))).)))). | 0.950 -12.42 |
| celegans | chromosome:I:14220490:14220575:1 | intergenic ## {SimpF: WRM0628dF11 1 fosmid} |
block1672 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.166 | no | no | 0.36/0.36 | 25/25/0.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 8 | 16 | 5arm | 1 | nd | 0.16 | 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------UCAAUCU--------------------------------------------------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| --------GTCAATCTTGAATTGCCAAGTAGTT---------------------------------------------------------------------------------- | 25 | 2 | |
| celegans | ggaatatcGTCAATCTTGAATTGCCAAGTAGTTaagtaatgattgaaattgtctttttccgttctgtttcaatatttattgattatttttcatgttttagattcacgtgtaaacc | ||
| ******************************************************************************************************************* | |||
| <<<<<<<<<<<<<<<<<<<<<<<<..................................................................................................... | F09C12.8 F09C12.8 F09C12.8 | ||
| celegans | ((..((((((.(((((.((((((..((((((((((......((((((((................)))))))).....))))))))))..)).)))).))))).))).)))..)) | 1.000 -20.49 |
| celegans | chromosome:II:5112646:5112760:-1 | Opposite_strand|Boundary_non-coding|F09C12.8|F09C12.8 ## F09C12.8|protein_coding|F09C12.8|F09C12.8 encodes an ortholog, predicted to be catalytically inactive, of Bombyx mori ecdysteroid phosphate phosphatase (EPP), human STS1 (OMIM:609201) and human UBASH3A (OMIM:605736). F09C12.8 is also paralogous to C. elegans C52E4.7, F53B6.7, F55A11.11, and T07F12.1. [Source: WormBase] ## {SimpF: WRM0613dB07 -1 fosmid,WRM0639aD02 -1 fosmid,WRM0621bD01 -1 fosmid,WRM062cF07 -1 fosmid,WRM0619cA05 -1 fosmid,WRM0623bH01 -1 fosmid,WRM068aD06 -1 fosmid,WRM0616dA04 -1 fosmid,WRM0620bB06 -1 fosmid,WRM0627aE10 -1 fosmid,WRM0619dB08 -1 fosmid,WRM0624aH11 -1 fosmid} |
block2022 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.012 | no | no | 0.40/0.47 | 19/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 1 8 | 40 34 | 5arm 5arm | 1 1 | nd nd | 0.55 0.21 | 7 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------AGGAGUG-------------------------------------------------------------------------------------------------------- | 1 | novel |
| seed | --UGGUAAU--------------------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| --------TAGGAGTGATGGTACGAAG--------------------------------------------------------------------------------------------- | 19 | 1 | |
| -ATGGTAATAGGAGTGATGGT--------------------------------------------------------------------------------------------------- | 20 | 1 | |
| celegans | gATGGTAATAGGAGTGATGGTACGAAGagatggtattggaactgatggtaggaggtatttatgtttgacgtcctcctctgttggaagtggttctcttcgacatgattcttccttttttca | ||
| ************************************************************************************************************************ | |||
| ...............................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<---- | F15D4.5 F15D4.5 F15D4.5 | ||
| celegans | ((.......((((((.(((...((((((((...((((....(((((((.((((((...(((....)))...))))))))))))).))))..)))))))).))).)))))).......)). | 1.000 -35.34 |
| celegans | chromosome:II:13247491:13247610:-1 | intergenic ## {Repeats: trf 1 11 0 class=trf} ## {SimpF: WRM0636aG07 -1 fosmid,WRM0637cD09 -1 fosmid} |
block2035 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.710 | no | no | 0.22/0.22 | 18/18/0.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 17 | 9 | 5arm | 1 | nd | 0.22 | 3 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------UUGAUUG------------------------------------------------------------------ | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------------TTTGATTGAGTTTTTTTG-------------------------------------------------------- | 18 | 2 | |
| celegans | ctgaaatagcagggaatTTTGATTGAGTTTTTTTGggaattggaaggttttgaattatgagaaggcatattaatatgtatgggttttgagg | ||
| ******************************************************************************************* | |||
| <<<<<------------------------------------------------------------------------------------------------ | ZK131.11b ZK131.11 ZK131.11 | ||
| celegans | ((.(((...((....((.(((((...(((((((((..((((.((.....)).)))).)))))))))..))))).))...))...))).)). | 0.640 -10.20 |
| celegans | chromosome:II:13801858:13801948:-1 | Opposite_strand|Boundary_non-coding|ZK131.11a|ZK131.11 ## Opposite_strand|Intronic_coding|ZK131.11b|ZK131.11 ## ZK131.11|protein_coding|ZK131.11|ZK131.11b [Source:RefSeq_peptide;Acc:NP_872046] ## {SimpF: WRM0617cG02 -1 fosmid,WRM0638dF08 -1 fosmid,WRM068bD11 -1 fosmid} |
block2125 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.723 | no | no | 0.36/0.37 | 19/22/0.67 | 0.0 | 1.0 | 3 | 0 | 1 | 0 | 8 | 8 | 5arm | 1 | nd | 0.26 | 3 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------UUCCAAG---------------------------------------------------------------------------------- | 3 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| --------GTTCCAAGATGTTGATTTGATG-------------------------------------------------------------------- | 22 | 2 | |
| --------GTTCCAAGATGTTGATTTG----------------------------------------------------------------------- | 19 | 1 | |
| celegans | gtctcattGTTCCAAGATGTTGATTTGATGaagactgattatttactcttttctatctctatttatatcaaaatttgcccttatctttgccccagatc | ||
| ************************************************************************************************** | |||
| <<<<<<<<<<<<................................................................................................ | F46F5.9 F46F5.9 F46F5.9 | ||
| celegans | ((((....((...(((((((((((..((((.(((..((.............))..))).))))...)))))..........)))))).))...)))). | 0.530 -9.02 |
| celegans | chromosome:II:822830:822927:1 | intergenic ## {SimpF: WRM0622dC12 1 fosmid,WRM0626dE09 1 fosmid,WRM0627cG11 1 fosmid,F46F5.9 1 Expression_profile,WRM0638dH08 1 fosmid,WRM067dE12 1 fosmid,WRM0626dF08 1 fosmid,WRM0618cG04 1 fosmid,WRM063cA07 1 fosmid,WRM069bC02 1 fosmid} |
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