| seed | ---------------------AGCCAAU-------------------------------------------------------------------------------------- | 209 | novel |
| seed | -------------------------AAUGUCU---------------------------------------------------------------------------------- | 3 | novel |
| seed | ----------------------GCCAAUG------------------------------------------------------------------------------------- | 1 | novel |
| | | | CE1 |
| | --------------------TAGCCAATGTCTTCTCTATC-------------------------------------------------------------------------- | 20 | 110 |
| cel-miR-1817 | --------------------TAGCCAATGTCTTCTCTATCATG----------------------------------------------------------------------- | 23 | 87 |
| | --------------------TAGCCAATGTCTTCTCTA---------------------------------------------------------------------------- | 18 | 4 |
| | --------------------TAGCCAATGTCTTCTCTATCAT------------------------------------------------------------------------ | 22 | 4 |
| | ------------------------CAATGTCTTCTCTATCATG----------------------------------------------------------------------- | 19 | 3 |
| | --------------------TAGCCAATGTCTTCTCTAT--------------------------------------------------------------------------- | 19 | 2 |
| | --------------------TAGCCAATGTCTTCTCTATCA------------------------------------------------------------------------- | 21 | 2 |
| | ---------------------AGCCAATGTCTTCTCTATCATG----------------------------------------------------------------------- | 22 | 1 |
| celegans | TGTACATTTCAATTTTCGAGTAGCCAATGTCTTCTCTATCATGCATTTTACAAATAATGAGTACATGATAG--TGAAA--TATTTGCTTCCTGAATTTC-----AGAGATGTTT | |
| cbriggsae | --------------------AAGCCAATTTTT-------------CGTTGCTTCATCGGAGTACATGACTA-----------ACGCCGTCATGGAGAAC---GTAAAAGTGCAG | |
| cbrenneri | --------------------TAGCCAATCGTT--------------------------GAGATTGTGATGAATTCGAAGAAAATTACTTCATAAA---------ACGATTGCTT | |
| cjaponica | --------------------TAGCCAATTTGT------------------------CGAAATTTTTTGTCG---------AATTTTTGTCGACAAAATTTCGACAAATTTGTCA | |
| ppacificus | --------------------TAGCCAATTGTT-----------------------AAGAAGGAAAAACTAG--CAAAAGTGATTTTTTTTCTGAGCAA------AATTGTGTTT | |
| | ******* * * * * ** | |
| celegans | ...(((((((....((((.(.(((.(((((.(((.((((((((.((((..........)))).)))))))) .)))) )))).))).).)))).... .))))))).. | 1.000 -27.30 |
| cbriggsae | ..((..(((((( ((((.(((((((((.((......... )).)))..))))))))) ).)))))))).. | 0.853 -16.30 |
| cbrenneri | .((.(((((((( ....((((((..((((.......))))...))))))) ))))))))). | 0.953 -12.00 |
| cjaponica | ..((.((((((( ((((((..((((((( (.......))))))))))))))))))))).)).. | 1.000 -23.40 |
| ppacificus | .((((((((((( .(((((((((((((.. ....)))..)))))))))).)))). .)))).))). | 1.000 -12.30 |
| celegans | chromosome:I:10869363:10869467:-1 | intergenic ## {SimpF: WRM0638bB08 -1 fosmid,WRM068aG01 -1 fosmid,WRM0629cD02 -1 fosmid} ## {MIR: cel-mir-1817} |
| cbriggsae | chromosome:chrX:7135776:7135920:1 | Same_strand|Intronic_coding|NM_178660 ## Opposite_strand|Intronic_coding|NM_153821 ## {SimpF: trf} |
| cbrenneri | chromosome:chrUn:41649762:41649906:-1 | Same_strand|Intronic_coding|NM_001056672 ## Opposite_strand|Exonic_coding|NM_001026725 |
| cjaponica | chromosome:chrUn:88872449:88872593:1 | intergenic ## {SimpF: trf} |
| ppacificus | chromosome:chrUn:155434944:155435088:-1 | Same_strand|Intronic_coding|NM_001041377 ## Opposite_strand|Intronic_coding|NM_001077648 |