other hairpins
novel_nonpairedHIGH_bulgeHIGH (27 loci)
block4273 [novel_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.219 | no | no | 0.20/0.20 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 8 | 0 | 3arm | 1 | nd | 0.35 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------UAUCUCA-------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------TTATCTCATAATTTTCTGAT-------- | 20 | 1 | |
| celegans | agatagtttttaaattgttatgatatgaaattagtttcgaTTATCTCATAATTTTCTGATacgctatt | ||
| ******************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | C39H7.9 C39H7.9 srsx-16 | ||
| celegans | .((((((..(((....(((((((.((((............)))).)))))))....)))...)))))) | 1.000 -8.90 |
| celegans | chromosome:IV:5617094:5617161:-1 | Same_strand|Intronic_coding|C39H7.9|C39H7.9 ## C39H7.9|protein_coding|srsx-16|Serpentine Receptor, class SX family member (srsx-16) [Source:RefSeq_peptide;Acc:NP_001023055] ## {SimpF: WRM0627bB10 -1 fosmid,WRM068bC07 -1 fosmid} |
block4790 [novel_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.297 | no | no | 0.25/0.25 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 27 | 10 | 3arm | 1 | nd | 0.40 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------UAAUUCC--------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------------------------------------TTAATTCCTTCTGAAATAAC--------------------------- | 20 | 1 | |
| celegans | cttacactttaaaaatttgaaattactgtttcacaaaagtggtaaattttctggaaattttcacatctaaTTAATTCCTTCTGAAATAACaaggctaattttgaatgtaatttgtga | ||
| ********************************************************************************************************************* | |||
| celegans | .(((((..(((...(((..((((((((((((((...(((..((.((((...((((.....)).))...)))).))..))).)))))).....)).))))))..))).)))..))))) | 0.510 -16.70 |
| celegans | chromosome:IV:14444301:14444417:-1 | intergenic ## {SimpF: WRM0622dH07 -1 fosmid,WRM0610aG11 -1 fosmid} |
block4856 [novel_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.268 | no | no | 0.35/0.35 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 16 | 2 | 5arm | 1 | nd | 0.45 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------GUUAUUG---------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------TGTTATTGTTTCCAGCTTTG---------------------------------------------------- | 20 | 1 | |
| celegans | catattttttttacaaTGTTATTGTTTCCAGCTTTGacttaccgcatattgttgttgctcaaatggcaccattgacaaaattgtgtgt | ||
| **************************************************************************************** | |||
| -----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | Y57G11C.24a.1 Y57G11C.24 eps-8 | ||
| -----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | Y57G11C.24d.3 Y57G11C.24 eps-8 | ||
| -----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | Y57G11C.24h Y57G11C.24 eps-8 | ||
| -----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | Y57G11C.24d.8 Y57G11C.24 eps-8 | ||
| -----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | Y57G11C.24d.10 Y57G11C.24 eps-8 | ||
| -----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | Y57G11C.24a.4 Y57G11C.24 eps-8 | ||
| -----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | Y57G11C.24d.5 Y57G11C.24 eps-8 | ||
| -----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | Y57G11C.24d.1 Y57G11C.24 eps-8 | ||
| -----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | Y57G11C.24a.3 Y57G11C.24 eps-8 | ||
| -----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | Y57G11C.24d.6 Y57G11C.24 eps-8 | ||
| -----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | Y57G11C.24d.2 Y57G11C.24 eps-8 | ||
| -----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | Y57G11C.24e.2 Y57G11C.24 eps-8 | ||
| -----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | Y57G11C.24e.1 Y57G11C.24 eps-8 | ||
| -----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | Y57G11C.24g Y57G11C.24 eps-8 | ||
| -----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | Y57G11C.24d.9 Y57G11C.24 eps-8 | ||
| -----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | Y57G11C.24d.4 Y57G11C.24 eps-8 | ||
| -----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | Y57G11C.24a.2 Y57G11C.24 eps-8 | ||
| -----------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | Y57G11C.24d.7 Y57G11C.24 eps-8 | ||
| celegans | (((((..((((..(((((....((((...(((..((((............))))..))).....)))).)))))..))))..))))). | 0.420 -12.90 |
| celegans | chromosome:IV:14894932:14895019:-1 | Opposite_strand|Intronic_coding|Y57G11C.24e.1|Y57G11C.24 ## Y57G11C.24|protein_coding|eps-8|eps-8 is predicted to encode five protein isoforms with similarity to mouse epidermal growth factor receptor kinase substrate that affects embryonic viability, growth, locomotion, osmoregulation, and larval viability. interacts with GEX-3 in yeast two-hybrid assays. [Source: WormBase] ## {SimpF: [cgc5194]:gei-19 -1 RNAi,WRM061bG05 -1 fosmid,WRM0617dG08 -1 fosmid,yk393c10 -1 RNAi,WRM066cF03 -1 fosmid} |
block5041 [novel_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.837 | no | no | 0.33/0.33 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 24 | 0 | 3arm | 1 | nd | 0.33 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------UUGACAG------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------------------------------------------------------------TTTGACAGTTGCTAGGTTTTT------------------------ | 21 | 1 | |
| celegans | ttttccaagtttgtcatgtttcaacattaggatattattgcaagttatttcactctaccgtTTTGACAGTTGCTAGGTTTTTgaaaatttcggaccaattttgaaa | ||
| ********************************************************************************************************** | |||
| celegans | .((((.(((((.(((...((((((..((((......((((((((.................)))).))))..))))....))))))......))).))))).)))) | 0.670 -12.63 |
| celegans | chromosome:IV:16047258:16047363:-1 | intergenic ## {SimpF: WRM0627aG02 -1 fosmid} |
block5089 [novel_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.721 | no | no | 0.55/0.55 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 8 | 16 | 3arm | 1 | nd | 0.40 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------UUGCACC-------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------------------------------GTTGCACCACGAGATGTGTG-------- | 20 | 1 | |
| celegans | tggaaccggggcgttcgctgggacctggacgacgggaagcggagcagcttcttcttccttctttGTTGCACCACGAGATGTGTGaaggttct | ||
| ******************************************************************************************** | |||
| ------------------------------------------------------------------------------------------------------ | K03D3.13 K03D3.13 rac-3 | ||
| celegans | .((((((...(((((((.(((......(((((.((((((.((((....)))).))))))...)))))...)))))).)))).....)))))) | 0.410 -26.70 |
| celegans | chromosome:IV:16317575:16317666:-1 | Opposite_strand|Intronic_non-coding|K03D3.13|K03D3.13 ## K03D3.13|pseudogene|rac-3| ## {SimpF: WRM0633dF01 -1 fosmid,WRM0639bB12 -1 fosmid,WRM0621bE04 -1 fosmid,WRM0641bC05 -1 fosmid,K03D3.6 -1 Expression_profile} |
block5111 [novel_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.216 | no | no | 0.30/0.30 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 16 | 20 | 5arm | 1 | nd | 0.40 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------UCUUCAU--------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------TTCTTCATTGTTTTCGTTTG--------------------------------------------------------------------------- | 20 | 1 | |
| celegans | tttgagttttcaataaTTCTTCATTGTTTTCGTTTGaataaaacttttttttaaacattagttttttaagttttcgaaatagcgattagcatagaataacaaaaatacaaa | ||
| *************************************************************************************************************** | |||
| celegans | .(((.(((((.....(((((....((((.(((((.....(((((((......((((....))))...)))))))......)))))..)))).)))))....))))).))). | 0.920 -15.90 |
| celegans | chromosome:IV:16534793:16534903:-1 | intergenic ## {SimpF: WRM0621bE04 -1 fosmid} |
block5113 [novel_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.423 | no | no | 0.25/0.25 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 7 | 32 | 5arm | 1 | nd | 0.45 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------AUUAUCG--------------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------TATTATCGTCGAAATGTTAT--------------------------------------------------------------------------------------------- | 20 | 1 | |
| celegans | tccatatTATTATCGTCGAAATGTTATaaatttgagaggaaaaggaaaatcagtttttagtctaaacaaatatgaaaaatgattcactgccagcaaagcttgtttgagattttaattggg | ||
| ************************************************************************************************************************ | |||
| celegans | .(((.((((..(((.(((((..((......((((...((...((...(((((.((((((.............)))))).)))))..)).))..))))))...))))))))..))))))). | 0.850 -19.22 |
| celegans | chromosome:IV:16566054:16566173:-1 | intergenic ## {SimpF: WRM0630bE09 -1 fosmid,WRM0621bE04 -1 fosmid} |
block5126 [novel_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.109 | no | no | 0.32/0.33 | 21/22/1.00 | 0.5 | 0.0 | 2 | 0 | 1 | 0 | 31 | 7 | 5arm | 1 | nd | 0.33 | 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------UUUUUUC--------------------------------------------------------------------------------- | 1 | novel |
| seed | ---------------------------------UUUUUCU-------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| --------------------------------TTTTTTCTGCAGCAAAGAATC------------------------------------------------------------------- | 21 | 1 | |
| -------------------------------TTTTTTTCTGCAGCAAAGAATC------------------------------------------------------------------- | 22 | 1 | |
| celegans | gagaaaatacatggggtttagtaatttttcgTTTTTTTCTGCAGCAAAGAATCacaagaatcatgttttttattttttgtgaaaattcgaaattttttactgtttctaaatagcattcta | ||
| ************************************************************************************************************************ | |||
| celegans | .((((........(((..((((((..(((((...(((((....(((((((((...(((((......)))))))))))))))))))..)))))....))))))..)))........)))). | 0.720 -21.69 |
| celegans | chromosome:IV:16661263:16661382:-1 | intergenic ## {Repeats: dust 64625 64632 0 class=dust} ## {SimpF: WRM0621bE04 -1 fosmid} |
block5594 [novel_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.082 | no | no | 0.27/0.27 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 13 | 30 | 3arm | 1 | nd | 0.36 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------------AAUCGAA--------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------------------------------------------------------------------------------GAATCGAATTTGAATATGAATG------------- | 22 | 1 | |
| celegans | cttttttcgttttaaattcttcattgtttcgaggcattgaatcttcatcctctgatggctgcattcttttttctttaatcctcGAATCGAATTTGAATATGAATGatgaaaatatggg | ||
| ********************************************************************************************************************** | |||
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<........................................................... | B0218.5 B0218.5 B0218.5 | ||
| celegans | ((.(((((((((((.((((....(((.(((((((.((((((...(((((....)))))...............))))))))))))).)))....)))).)))..))))))))...)). | 0.920 -22.57 |
| celegans | chromosome:IV:8156365:8156482:1 | intergenic ## {SimpF: WRM0634bC01 1 fosmid,WRM0631cA04 1 fosmid,WRM0634dG03 1 fosmid,WRM0621dE12 1 fosmid,WRM0617cF03 1 fosmid,WRM0614bA01 1 fosmid,WRM0632aA07 1 fosmid,WRM0638cH10 1 fosmid,WRM068dG01 1 fosmid,WRM064cD07 1 fosmid,WRM0632bC05 1 fosmid} |
block6391 [novel_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.053 | no | no | 0.59/0.59 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 16 | 18 | 5arm | 1 | nd | 0.41 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------UGAUUUG--------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------GTGATTTGCTGGGTGCGCAGGT------------------------------------------------------------------------- | 22 | 1 | |
| celegans | gaatgagactaccgccGTGATTTGCTGGGTGCGCAGGTagccggcgcgctcccaacaattgttgggtagaatgtgcgctctaacgcacttttcgaaggcgtcactggttcc | ||
| *************************************************************************************************************** | |||
| celegans | ((((.((.....((((....((((..(((((((....(((..(((((((.((((((....))))))......)))))))))).)))))))..))))))))...)).)))). | 0.640 -42.00 |
| celegans | chromosome:V:2639525:2639635:-1 | intergenic ## {SimpF: WRM0617bC11 -1 fosmid} |
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