| seed | ----------------------------------ACCCGUA--------------------------------------------------------------------------------------------- | 123 | miR-51/52/55 |
| seed | --------------------------------------GUACAUU----------------------------------------------------------------------------------------- | 1 | novel |
| seed | ------------------------------------CCGUACA------------------------------------------------------------------------------------------- | 1 | novel |
| | | | CE1 |
| cel-miR-53 | ---------------------------------CACCCGTACATTTGTTTCCGTGCT----------------------------------------------------------------------------- | 24 | 109 |
| | ---------------------------------CACCCGTACATTTGTTTCCGTGC------------------------------------------------------------------------------ | 23 | 9 |
| | ---------------------------------CACCCGTACATTTGTTTCCGTGCTT---------------------------------------------------------------------------- | 25 | 3 |
| | ---------------------------------CACCCGTACATTTGTTTCCGTG------------------------------------------------------------------------------- | 22 | 1 |
| | ---------------------------------CACCCGTACATTTGTTTCCG--------------------------------------------------------------------------------- | 20 | 1 |
| | -------------------------------------CGTACATTTGTTTCCGTGC------------------------------------------------------------------------------ | 19 | 1 |
| | -----------------------------------CCCGTACATTTGTTTCCGTGCT----------------------------------------------------------------------------- | 22 | 1 |
| celegans | ------------------CCGATTCTGACAGTCCACCCGTACATTTGTTTCCGTGCTTGACTTCAAAGCTCAATCACGGC-ACAATATATGGGTCGCCAGTCATTGTAGTCGGA-------------------- | |
| cbriggsae | ----------------TTCCCGCTCTGACAGTCCACCCGTACATATGTTTCCGTGCTTGACA-TAGAGCTCAATCACGAT-ACAATGAGCGGGTAGCCGGTCATCG-AGTCGGAA------------------- | |
| cjaponica | TATT------TCGACGCTCCTCCAACGACAGACCACCCGTACATATGTTTCCGTGCTTGACTCTACGCCTCAATCACGTTAACAATTTATGGTTCGCCGGTCACG--AGTTGAGCTTTTGCGTTTGATG----- | |
| cbrenneri | TATTGGCTAGTATTCTTTTCGGCTCTGACAGTCCACCCGTACATATGTTTCCGTGCTTGACAAT-GAGTTCAATCACGTC-ACAATTTATGGGTCGCCGGTCATTG-AGTTGAACATTTGAACCAGATCTAATA | |
| cremanei | -----------------ACCCTCTACTACCGTCCACCCGTACATATGTTTCCGTGCTTGACATT-GTGCTCAATCACGTT-ACAATATATGGGTCGCCGGTCTT---AGGCGGT-------------------- | |
| | * ** * ************ **************** ********* ***** ** * *** *** ** * | |
| celegans | ((((((.((((.....(((((((...((((..(((((.((((((....)).)))).))))). ))))..))))))).....))))....)))))). | 1.000 -31.60 |
| cbriggsae | .(((.((((((((.....((((((.(((.(((...((((.((((.. ......)))).)))).. )))))).)))))).....))))..) ))).))). | 1.000 -33.90 |
| cjaponica | .... (((((((..((.((((....((((...((..((((((((..((((.((((.........)))).))))..))))...))))...))..))))... .)))))).....))))).)).. | 0.979 -29.10 |
| cbrenneri | ((((((......(((..((((((((((((.....(((((((.((.(((...((((.((((.... ....)))).)))).. ))))).))))))).....))))..) ))))))).....)))......)))))) | 0.838 -31.90 |
| cremanei | (((.((((..((((...(((((((.((.(((...((((.((((.... ....)))).)))).. ))))).)))))))...))))..) ))).))) | 1.000 -28.80 |
| celegans | chromosome:IV:11027567:11027661:-1 | intergenic ## {SimpF: WRM0616dB12 -1 fosmid,WRM063bC05 -1 fosmid,WRM064bF06 -1 fosmid} ## {MIR: cel-mir-53} |
| cbriggsae | chromosome:chrIV:5731131:5731226:1 | Same_strand|Intronic_coding|NM_001106790 ## Opposite_strand|Intronic_coding|NM_001128722 ## {MIR: cbr-mir-52} |
| cjaponica | chromosome:chrUn:11282764:11282884:1 | intergenic |
| cbrenneri | chromosome:chrUn:102731927:102732057:1 | intergenic |
| cremanei | chromosome:chrUn:56827927:56828018:-1 | Opposite_strand|Intronic_coding|NM_069625 |