confident novel miRNAs
novel_cloningOK_randfoldOK (1 loci)
block8153_novel
Cloning frequencies
| block8153_novel 3arm | 6 |
| block8153_novel 3arm | 0.004 |
block8153 [novel_cloningOK_randfoldOK]
Hairpin parameters
| no | 0.001 | no | no | 0.50/0.50 | 22/22/1.00 | 0.0
| 0.0
| 6
| 0
| 1
| 0
| 25
| 5
| 3arm
| 1
| nd
| 0.14
| 3
| 6 | 1 | na | na |
| seed | ------------------------------------------------------------------------------------AAGUGAU--------------------------------------- | 6 | novel |
| | | | CE1 |
| | -----------------------------------------------------------------------------------CAAGTGATACCAGACCGCTAGT------------------------- | 22 | 6 |
| celegans | TACATTTATTCTTACTGTCCTCGAATACAAACTGGCGGTTTGCAT--TCACTTACATTT-----ATAAGACAA-----AAATGCAAGTGATACCAGACCGCTAGTTTGTAAAAGGGATAATTTTATGTGA | |
| cremanei | --------------GCATACATGAATTTCTTCCAGACATTTGTGC--TTTAGCAGATATAACCATTAATGCAG-----CAAAGAAAGTGATC----------------TGGTAGAGGAATGTA------- | |
| cbriggsae | --------------GTGCGTAGAAAATTATGATAACATTTGGAATTATTGTTTAAAGTT-----TGGAAGAAGACACACAAAACAAGTGATC----------------CGGAAAATGTTATCG------- | |
| cjaponica | -----------------------AATTTTTG---GCTATTAGCCG--TCGATT-----------TCAATGCAACTGCCAAATTCAAGTGATGGC--------------TAATAGCCAAAAATT------- | |
| ppacificus | -----------------------------TGGCTGCTGTCAGCAT--TCCTTCTCTTGT-----TCGAGACAA-----AAAGTGAAGTGATC-------------------AACTGATCAGCTC------ | |
| | * * * * * ** ******* * | |
| celegans | (((((..........((((((....(((((((((((((((((... ((((((.((((( ......... ))))).))))))...)))))))))))))))))...)))))).....))))). | 0.930 -42.46 |
| cremanei | ...(((((...(((((.((((((((((.((( (...(((..............))))) ))....))))).)) ))).))))).))))) | 0.999 -22.44 |
| cbriggsae | ................(((((((((((((....((((((...((( (......)))).....))))))....)) ))...))))))))). | 0.968 -17.10 |
| cjaponica | (((((((( ((((((((((( ((.((( (.(((((....))...))).)))))))))) ))))))))))))))) | 0.999 -32.00 |
| ppacificus | .(((((..(((((... ((((((.(((.. ......... .))).)))).)).. ..)))))))))). | 0.997 -16.80 |
| celegans | chromosome:X:1390843:1390960:1 | intergenic ## {SimpF: WRM0636bA02 1 fosmid,WRM0639aA01 1 fosmid,WRM064cE08 1 fosmid,WRM063cH01 1 fosmid,WRM0629aD05 1 fosmid,WRM0638dE02 1 fosmid,WRM0625bG09 1 fosmid} |
| cremanei | chromosome:chrUn:40953794:40953879:1 | Opposite_strand|Exonic_coding|NM_062585 ## Same_strand|Intronic_coding|NM_062681 |
| cbriggsae | chromosome:chrX:7915695:7915782:-1 | Same_strand|Intronic_coding|NM_133381 |
| cjaponica | chromosome:chrUn:70185177:70185246:1 | intergenic ## {SimpF: trf,trf} |
| ppacificus | chromosome:chrUn:121899751:121899908:1 | Same_strand|Intronic_coding|NM_001080348 ## Opposite_strand|Intronic_coding|NM_213308 |