| cel-mir-40 | ------TCCTGTCCGCACCTCAGTGGATGTATGCCATGATGATAAGATATCA----GAAATCCTATCACCGGGTGTACATCAGCTAAGGT-GCGGGTACAGGT |
| cel-mir-35 | TCTCGGATCAGATCGAGCCATTGCTGGTTTCTTCCACAGTGGTACTTTCCATTAG-AA----CTATCACCGGGTGGAAACTAGCAGTGGC-TCGATCTTTTCC |
| cel-mir-36 | --CACCGCTGTCGGGGAACCGCGCCAATTTTCGCTTCAGTGCTAGACCATCCA---AAGTGTCTATCACCGGGTGAAAATTCGCATGGGTCCCCGACGCGGA- |
| cel-mir-37 | ---TAGAAACCCTTGGACCAGTGTGGGTGTCCGTTGCGGTGCTACATTCTC-----TAATCTGTATCACCGGGTGAACACTTGCAGTGGTCCTCGTGGTTTCT |
| cel-mir-39 | -------TATACCGAGAGCCCAGCTGATTT-CGTCTTGGTAATAAGCTCGTCATT-GA--GATTATCACCGGGTGTAAATCAGCTTGGCT-CTGGTGTC---- |
| cel-mir-41 | -----GGGTCCCAGAGACCTTGGTGGTTTTTCTCTGCAGTGATAGATACTTCTAACAACTCGCTATCACCGGGTGAAAAATCACCTAGGT-CTGGAGCCTCCT |
| cel-mir-38 | ---TCTGTGAGCCAGGTCCTGTTCCGGTTTTTTCCGTGGTGATAACGCATCCAA--AAGTCTCTATCACCGGGAGAAAAACTGGAGTAGGACCTGTGACTCAT |
| * * * * ** * ********** * * * |
| cel-mir-53 | ------------CCGATTCTGA---CAGTCCA--CCCGTACATTTGTTTCCGTGCTTGACTTCAAAGCTCAATCACGGCACAATATATGGGTCGCCAGTCATTGTAGTCGGA----- |
| cel-mir-51 | --------------GTCCGAAAAGTCCGTCTA--CCCGTA-GCTCCTATCCATGTTACTGGTCAAAAAGTGAACATGGAAGCAGGTACAGGTGCACGGCGAGTAGGGTCATGAAGCT |
| cel-mir-55 | -------------AGATTTGGAACTTAATGGGACTCGGCAGAAACCTATCGGTTATACTTTTTGGATAT-----GCTATACC-CGTATAAGTTTCTGCTGAGCCCCTTATTCCTGTT |
| cel-mir-54 | GTGAGTCGCGCTCTGACTAGGATATGAGACGA--CGAGAACAT---------TGCTTTTTTAAAAGACTTGTACCCGTAATC---TTCATAATCCGAGTCAGGGCTAGCTGAC---- |
| cel-mir-56 | --------------GAGCCAGTGTCTGTTCTTGGCGGATCCATTTTGGGTTGTACCTCATCCTAAATTTG----ACGGTACC-CGTA-ATGTTTCCGCTGAGAACCGACTGTGCACC |
| cel-mir-52 | -----------TCCAACTCTAA---CAGTCCA--CCCGTACATATGTTTCCGTGCTTGACAGCGAAGCTCAATCACGTTACAATGAAAGGGTAGCCGGTTATTGAAGTTGGGTCTT- |
| * * * |
| cel-mir-64 | ---CGCTGAC-----------CTCGCCG---------------------------AATATGACAC------------------TGAA----GCGTTACCGAACCGTTTTCCC----------------ACACCTGGATTCGGTGCAACGATC-AGTGGCATGCTCGGCTAGCGCCAGT------- |
| cel-mir-229 | -----------------------CGCCG---------------------------GCAATGACACTGGTTATCTTTTCCATCGTGGA----ATGCCCCCCATTGATTTTTTCCCCTTTTCGGGGGGAAAAAATTGGAAACGAGAAAGGTATCGGGTGTCATAGCCGGCG---------------- |
| cel-mir-65 | --ATGGAGCC-----------TTCGCCG---------------------------ATTATGACAC------------------TGAA----GCGTAACCGAAC------ACC----------------ATATTTTGAGATTCTGCTACGCGC-AGTGCCATGCTCGGCGCGTTGGCTCCATTAAA |
| cel-mir-66 | CCACAAAAAT--------------GCCA---------------------------TACATGACACTGATTAGGGATGTGA---TGAATGTTAAGATCCCGATC-------------------------AAATTCCTAAC--------------GGTGTCAAACATGGCGTATGTGGTTGTAG--- |
| cel-mir-63 | ACAAGCAGACACAATTTCTAACTCGTCGGTAGTCATCGTTCTAGCTGAAAAGGACACTATGACAC------------------TGAA----GCG------------------------------------AGTTGGAAATAGTG------------GTTCTACTTG------------------- |
| * * ******* ** * * * * * * |
| cel-mir-795 | GAA----ACGTTACC--TGCTGAGGTAGATTGATCAGC--------GAGCTTGATACCCCGTTCAAAATC-GTGATCAGTATACTTCGTCAGGCAGCTTGTTTT |
| cel-mir-48 | AAACTCCCGGGAACT-----TGAGGTAGGCTCAGTAGATGCGAATTGAACGGTATCTCACATCCACCAGC-CTAGCTCGCATTCCCAGAGTTTACGGTATTGTT |
| cel-mir-241 | -----CGGGGGTGTCAAAGTTGAGGTAGGTGCGAGAAATGACGGCATCCATATAGTAATCGTTCATTGTCTCTCAGCTGCTTCATCTGTGACATGGCTACG--- |
| cel-let-7 | -TACACTGTGGATCCGGTGAGGTAGTAGGTTGTATAGTTTGGAATATTACCACCGGTGAACTATGCAA----TTTTCTACCTTACCGGAGACAGAACTCTTCGA |
| cel-mir-84 | -------GTGGCATC--TGAGGTAGTATGTAATATTGT--------AGACTGTCTATAATGTCCACAA----TGTTTCAACTAACTCG-------GCTGTTCT- |
| * * *** * * * * * |
| cel-mir-82 | ---GAAATAGGTTCTTTTAGC-----AACCGGTTTTCTCTGTGATCTACAGAATGACAGCTAATCGTC------TGAGATCATCG--TGAAAGCCAGTTGTT--TTTATGAACTC--------- |
| cel-mir-81 | ATCAGTGCCATCGTGCCCAAC-----AGTCGGTTTTCACCGTGATCTG-AGAGCAATCCAAAAATGCTTTTC--TGAGATCATCG--TGAAAGCTAGTTGTTGGTCTACGGGCTTTTG------ |
| cel-mir-80 | ATGGACACTCGTTCGCTCAGC-----TTTCGACAT---------GATTCTGAACAATCCGCAAGCCCATGTTGTTGAGATCATTAGTTGAAAGCCGAATGAT----CAGAGATATC-------- |
| block4332_cand | GTGACGATATTCAATTGCAACCTGTTGGTTGATCT---------CCTACCAAATAATGGATAAGAGA-------TCAGGCAATAGGTTCAAAAGTGAATAAT-----ATTGATTTTTGAGTGAC |
| * * * * * * * ** * ** ** * *** * * * |
| cel-mir-61 | ----TATCGCTGAACCTCGAGATGGGTTACGGGGCTTAGTCCTTCCTCCGTA----TGGCAATGACTAGAACCGTTACTCATCTCG-------AGGTTTCGGTGAT |
| cel-mir-44 | GAGAAAATGGCCAATCTGGATGT-GCTCGTTGGTCATAGACGTCAACACGAA-CTGTTCATATGACTAGAGACA-CATTCAGCTTGGC-----CTGCTTCTCTA-- |
| cel-mir-45 | -CACCATGTGCCACGCTGGATGT-GCTCGTTAGTCATAATATCCTCCACAAAGCAAGGACTATGACTAGAGACA-CATTCAGCTTGGCGCCGAATGCAT------- |
| * * ** ** * * * * * ** * * ********* * * *** ** * * * |
| cel-mir-74 | ---AAATGGTTCAAAAAACGTTCGGGCT--TCCATCTCTTTCC-CAGCCTA--------CATCTCAAC--CTGGGCTGGCAAGAAAT-GGCAGTCTACACGTTTTTCAACCAAA |
| cel-mir-72 | ------AGGTCC------CGTCAGAGCTAGGCAAGATGTTGGCATAGCTGAATGATCGCTATAACAACTATCAGCTTCGCCACATTC-TGCCACGCACTGATGTGAGGACCT-- |
| cel-mir-73 | CAGTGAGAGTCCCACACACGACTGGACT--TCCATATCGAGCCACAGC-------------TATCAACGAATTTGCTGGCAAGATGTAGGCAGTTCAGTTGTGCGTTTATGGAG |
| ** * ** * ** * * * * *** * **** * ** * * ** * * * |
| cel-mir-50 | CTGCCCGCCGGCCGCTGATATGTCTGGTATTCTTGGGTTTGAAC-----TTCCAGCGTTGAACCCGCATATTAGACGTATCGACGGCCGGCGGGGCAGGTAAT-------------------------G |
| cel-mir-90 | ---------GGGCGCCATTTCGA---------GCGGCTTTCAACGACGATATCAACCGACAACTCACACTTTTG-CGTGTT------------GATATGTTGTTTGAATGCCCCTTGAATTGGATGCCA |
| cel-mir-62 | --------------------------------GTGAGTTAGATC-----TCATATCCTT----CCGCAAAATGGAAAT---------------GATATGTAATCTAGCT---------------TACAG |
| * ** * * * * * * ** * * * * * ** * |
| cel-mir-2 | TAAACAGTATACAGA------------AAGCCATCAAAGCGGTGGTTGATGTGTTGCAAATTATGACTTTCATATCACAGCCAGCTTTGATGTGCTGCCTGTTGCACTGT--------- |
| cel-mir-797 | -----CGTCCAATGG------------ACGATATCACAGCAAT-------------CACAATGAGAAGAATACATCTAGATACTCTTTTCATTGGTTTCTGTGAAATCGTATTTGAATG |
| cel-mir-43 | ---------TATTGGCACTAGTCGCCCGTGACATCAAGAAACTAGTGATTATG---CCAAACCACAGGGACATATCACAG------TTTACTTGCTGTCGCGGGCGGTGC---TGAGTT |
| * * * **** * * * * * *** ** ** * * * |
| cel-mir-1829c | AAGCGAAATTCAAGATGGTTGTAAAACATCGAGTACTACAACCACTGGAATTTCTCTATTGC |
| cel-mir-1829b | AAGCGATCTTCTAGATGGTTGTAAAACATCGAGTATTACAACCACTGGAATTTCTCTATT-- |
| ****** *** *********************** ************************ |
| cel-mir-238 | TCTCCATTGACTGTTTGGATGTT-CTCGGACGTTCAAAGCTACATCCAACAAATTGGTAGCTTTGTACTCCGATGCCATTCAGATAGTTATGAGCCATG--- |
| cel-mir-239a | TACACGTTTGCAATTTTTGTACTACACATAGGTACTGGACAATTTTCAAAATATATCCAG-TGTCTAGTCTAGTGCAA---ACATTGCTCGGTGTTGTTTGA |
| * * ** * *** * * * * * ** * * * * *** * ** ** * * ** ** *** * * ** * * * * * |
| cel-mir-86 | ---CGTGTCCACGCCGTCTA--AGTGAATGCTTTGC---CACAGTCTTCGATGTTCTG-AAATGAAGCCTGGGCTCAGATTCGCTTAGGCCGGAGTTTGACACGGCA |
| cel-mir-785 | GCTCTTTTTCTCACCCATCAGCACAGAATTTTTCGCTAACAGAAACCTCAAAACAATGTAAGTGA-------------ATTGTTTTGTGTAGATGGTGGAAATGAGC |
| * * * * * ** * * **** ** ** ** * * ** * ** ** *** *** ** * * * * ** * * |
| cel-mir-231 | TA-GCACCACAGGTTGTTCTGACTGTTTCAAAAGCTTGTAGTATCTTAA-----TAAATAAACATATAAGCTCGTGATCAACAGGCAGAACAACTCGGTTTTG------TG |
| cel-mir-787 | GATGTATCAGTGGACG-------------AAAGATACATACGATCTTACATCTTCAAAATGGTATGTAAGCTCGTTTT--------AGTATCTTTCGTCTCTGATCACATT |
| * * * ** ** * *** ** ****** *** ** ********* * ** * *** * ** * |
| cel-mir-75 | ---------TTCTTGTTGCTTTGAAGAATTGCAGTCGGTTGCAA-GCTTAAATACAAATCCGAATTGTTATTAAAGC-----TACCAACCGGCTTCAAGTCTGAAAGAGCAG |
| cel-mir-79 | TAGTAGACATTCTCCGATCTTTGGTG------ATTCAGCTTCAATGATTGGCTACAGGTT----TCTTTCATAAAGCTAGGTTACCAA--AGCTCGGCGTCTT---GATCTA |
| **** ***** * * ** * * *** * ** **** * * ** ****** ****** *** **** ** * |
| cel-mir-46 | CTGAGG------TGAAGCTGAAGAGAGCCGTCTATTGACAGTTCAAGACCACGAGTCGTTGTGTGCTGTCATGGAGTCGCTCTCTTCAGATGA--TCCGGTCAAT |
| cel-mir-47 | --GAGAGCCGACTGAAACTGAAGAGAGCAGTCTATTGACAGTCGGTTACTCGAAATC----TTTACTGTCATGGAGGCGCTCTCTTCAGATGATGTCTGGCCC-- |
| *** **** *********** ************* ** * ** * * *********** **************** ** ** * |
| cel-lin-4 | ATGCTTCCGGCCTGTTCCCTGAGA--CCTCAAGTGTGAGTGTACTATTGATGCTTCACACCTGGGCTCTCCGGGTACC---------AGGACGGTTTGAGCAGAT |
| cel-mir-237 | TTCTACATTGCGTGGTCCCTGAGAATTCTCGAACAGCTTCAAAGTGTTCAAGCT----GTCGAGTTTTGTCAAGGACCAAACAATAGAAGATCACTTGGGAAC-- |
| * ** ** ********* *** * * * ** * *** * * * * * *** * ** *** * * |
| cel-mir-233 | --ATATAGCATCTTTCTGTCTCGCCCATCCCGTTGCTCCAATATT-CTAACA-ACAAGTGATTATTGAGCAA---TGCGCATGTG-CGGGATAGACTGATGGCTGC |
| cel-mir-87 | GGTTGTGCCATCCGGCCGCCT----GATACTTTCGTCTCAACCTCGCTGTCAGATTGGTCGTAGGTGAGCAAAGTTTCAGGTGTGCCGGAACACACC--------C |
| * * **** * * ** ** * * * *** * ** ** * ** * ******* * * **** *** * * ** * |
| cel-mir-789-1 | TGTCCTGAAGGCAGGCAATTGATGACCCAGACAAGGACTAATCAAGATTGTCGATCTAGTCCCTGCCTGGGTCACCAATTGTCGGCCCCCGCGGGCA |
| cel-mir-789-2 | TGTCCTGAAGGCGGACAATTGATGACTCAGGCAGGGACTAATCATGATTGTCGATTTAGTCCCTGCCTGGGTCACCAATTGTCGGCCCCCGCGGACA |
| ************ * *********** *** ** ********** ********** ************************************** ** |
| cel-mir-789-1 | TGTCCTGAAGGCAGGCAATTGATGACCCAGACAAGGACTAATCAAGATTGTCGATCTAGTCCCTGCCTGGGTCACCAATTGTCGGCCCCCGCGGGCA |
| cel-mir-789-2 | TGTCCTGAAGGCGGACAATTGATGACTCAGGCAGGGACTAATCATGATTGTCGATTTAGTCCCTGCCTGGGTCACCAATTGTCGGCCCCCGCGGACA |
| ************ * *********** *** ** ********** ********** ************************************** ** |
| cel-mir-791 | ---------GAACCTTCGATTACCTTATCCGTTGTAGCCAAAGTTCAACGAAGCGGCAACTTTGGCACTCCGCAGATAAGGCAATCGATTGTTT |
| cel-mir-790 | GCCGGCTTGGCACTCGCGAACACC---GCGATTTCACTTATAACTC---------GCGGCGTTAGCTCTGTGTCAAACCGGC------------ |
| * ** *** *** * ** * * * ** ** * ** ** ** * * *** |
| cel-mir-49 | TTTTGAAAAAGACCACCGTCCGCAGT-------TTGTTGTGATGTGCTCCA-AGCAATCATGAGTCTGA----AGCACCACG-AGAAGCTGCAGATGGAGGTTCTGATTT |
| cel-mir-83 | -----------AGCACCACTCGGAACCACTGAATTTATGTG-TGTACTTGACGGCCAACAAGAGCATCGATCTAGCACCATATAAATTCAGTAATTTCGCGTCGAGAGCT |
| * **** ** * ** **** *** ** * ** * ** *** * ******* * * * * * * ** ** * |
| Family | Size | Seed | Members |
| novel2 | 2 miRNAs | GUAUUAA | sblock65_cand |
| sblock79_cand | |||
| novel3 | 2 miRNAs | CCGGCCC | sblock65_cand |
| sblock79_cand | |||
| novel4 | 2 miRNAs | GCCAAGC | block2960_cand |
| block3587_cand |
| sblock65_cand | -------AAATGAATGTAAAGCCCCAGCCGGCCCTTACCGTTTAATACATGTTCC--CGGTCGATGCACCATGTATTAAACGGTAAGGGCCGGCTGGGGCTTTACA-ACATTT---------- |
| sblock79_cand | ATTTAGGAAATG-TTGTAAAGCCCCAGCCGGCCCTTACCGTTTAATACATGGTGCATCGACCG--GGAACATGTATTAAACGGTAAGGGCCGGCTGGGGCTTTACATTCATTTATTGTTAGAA |
| ***** ************************************* * * ** ** * * ************************************* ***** |
| sblock65_cand | -------AAATGAATGTAAAGCCCCAGCCGGCCCTTACCGTTTAATACATGTTCC--CGGTCGATGCACCATGTATTAAACGGTAAGGGCCGGCTGGGGCTTTACA-ACATTT---------- |
| sblock79_cand | ATTTAGGAAATG-TTGTAAAGCCCCAGCCGGCCCTTACCGTTTAATACATGGTGCATCGACCG--GGAACATGTATTAAACGGTAAGGGCCGGCTGGGGCTTTACATTCATTTATTGTTAGAA |
| ***** ************************************* * * ** ** * * ************************************* ***** |
| block2960_cand | GTCGACCGAGCGTCCGTGCCAAGCGCTACGTCACCAGGGGATAACTGTCGGAAGGCGGTTAGTCCCGGGTGCATAAGGAGTCGTGGATGGTTCAGGACCGAAAGGTAGCAGACA |
| block3587_cand | GTCGACCGAGCGTCCGTGCCAAGCGCTACGTCACCAGGGGATAACTGTCGGAAGGCGGTTAGTCCCGGGTGCATAAGGAGTCGTGGATGGTTCAGGACCGAAAGGTAGCAGACA |
| ****************************************************************************************************************** |
