other hairpins
novel_cloningOK_loopOverlap_nonpairedHIGH_bulgeHIGH (2 loci)
block7724 [novel_cloningOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.328 | no | no | 0.35/0.35 | 20/20/1.00 | 0.0 | 0.0 | 7 | 0 | 1 | 0 | 18 | -2 | 5arm_loop | 1 | nd | 0.60 | 4 | 7 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------AACUUGC------------------------------------------ | 7 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------------------TAACTTGCCTTGTTCGAAAT------------------------------ | 20 | 7 | |
| celegans | gcaatttatttttcccagTAACTTGCCTTGTTCGAAATatttcatactacaaaactggttgaatcgct | ||
| ******************************************************************** | |||
| celegans | ((.(((((......(((((...(((....((..(((....)))..))..))).))))).))))).)). | 0.600 -8.10 |
| celegans | chromosome:X:6345872:6345939:-1 | intergenic ## {SimpF: WRM0629aF09 -1 fosmid,WRM0629cG05 -1 fosmid,WRM068cE03 -1 fosmid,WRM0621dA04 -1 fosmid,WRM063bF02 -1 fosmid} |
novel_cloningOK_multiarm_DicerNOK (2 loci)
sblock16 [novel_cloningOK_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.027 | no | no | 0.38/0.59 | 22/24/1.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 2 2 | 0 0 0 | 1 1 1 | 0 0 0 | 2 30 9 | 17 3 26 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.12 0.33 0.41 | 2 4 5 | 5 | 1 | -17 | -17 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------AGGACAG----------------------- | 2 | novel |
| seed | -----------------------------------------------------AGACAUG---------------------------------------------- | 2 | novel |
| seed | ---UUGAGUU------------------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ---------------------------------------------------------------------------GAGGACAGCACGATCAGCCGTT--------- | 22 | 2 | |
| ----------------------------------------------------GAGACATGGTAGTATTTGGATTGG------------------------------ | 24 | 2 | |
| --GTTGAGTTGATTGCTGTTCAATTG-------------------------------------------------------------------------------- | 24 | 1 | |
| celegans | taGTTGAGTTGATTGCTGTTCAATTGaaaattatctattctaaccatatttaGAGACATGGTAGTATTTGGATTGGAGGACAGCACGATCAGCCGTTaaaaactga | ||
| ********************************************************************************************************** | |||
| celegans | (((((..((((((((((((((((((.(((((((((..((((((......))))))....)))))).))).)))))...)))))))..)))))).......))))). | 0.980 -26.40 |
| celegans | chromosome:II:2615935:2616040:1 | intergenic ## {SimpF: WRM0627bE01 1 fosmid,WRM0620bB07 1 fosmid} |
sblock48 [novel_cloningOK_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.039 | no | no | 0.33/0.43 | 21/25/0.80 | 0.0 0.0 | 1.3 0.0 | 3 2 | 0 0 | 1 1 | 0 0 | 6 25 | 15 0 | 5arm 3arm | 1 1 | nd nd | 0.40 0.22 | 4 2 | 5 | 1 | -15 | -17 |
| reads | miRBase family seed | ||
| seed | -------AUUUCUU-------------------------------------------------------------------------------------- | 3 | novel |
| seed | -----------------------------------------------------UUGAAAA---------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------TATTTCTTCTTTGTAGAGGAG------------------------------------------------------------------------- | 21 | 2 | |
| ----------------------------------------------------ATTGAAAATTGGTGTAGCACCGC------------------------- | 23 | 2 | |
| ------TATTTCTTCTTTGTAGAGGAGGTCT--------------------------------------------------------------------- | 25 | 1 | |
| celegans | gtttatTATTTCTTCTTTGTAGAGGAGGTCTattacaattttttattattttATTGAAAATTGGTGTAGCACCGCtccacttttgaatttttaatgtaac | ||
| **************************************************************************************************** | |||
| celegans | ((((((((....(((...((.(((..(((((((..((((((((.((......)).))))))))..)))).))).))).))....)))....))))).))) | 0.680 -19.40 |
| celegans | chromosome:MtDNA:3596:3695:1 | intergenic |
novel_cloningOK_nonpairedHIGH (2 loci)
block2128 [novel_cloningOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.765 | no | no | 0.52/0.52 | 23/23/1.00 | 0.0 | 0.0 | 5 | 0 | 1 | 0 | 10 | 21 | 5arm | 1 | nd | 0.39 | 3 | 5 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------AUGAGUG--------------------------------------------------------------------------------------------- | 5 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------GATGAGTGGCAAGTGGAATGAGC------------------------------------------------------------------------------ | 23 | 5 | |
| celegans | aaacatccttGATGAGTGGCAAGTGGAATGAGCaaaaagagggtagctggacggagcactggttggttggttggttggttgaagggcagggcacttccaatggacgatgtt | ||
| *************************************************************************************************************** | |||
| celegans | .((((((.((.((...(((.(((((...((..(((..((.((.((((((..(((....)))..)))))).))..))..))).....))...)))))))))).)).)))))) | 0.510 -22.80 |
| celegans | chromosome:II:842885:842995:1 | intergenic ## {SimpF: WRM068cE11 1 fosmid,WRM0622dC12 1 fosmid,F28A10.9 1 Expression_profile,WRM0627cG11 1 fosmid,WRM062cB08 1 fosmid,WRM0638dH08 1 fosmid,WRM0629aG02 1 fosmid,WRM067dE12 1 fosmid,WRM0626dF08 1 fosmid,WRM066aC01 1 fosmid,WRM0636cH07 1 fosmid,WRM061aB10 1 fosmid} |
block3092 [novel_cloningOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.509 | no | no | 0.36/0.40 | 22/25/0.83 | 0.7 | 1.8 | 6 | 0 | 1 | 0 | 5 | 20 | 5arm | 1 | nd | 0.39 | 2 | 6 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------AGAAUUG---------------------------------------------------------------------------------------------------- | 4 | novel |
| seed | --------AAUUGUU-------------------------------------------------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----GAGAATTGTTTGAATACCAAGC-------------------------------------------------------------------------------------- | 22 | 2 | |
| -------GAATTGTTTGAATACCAAGCGTC----------------------------------------------------------------------------------- | 23 | 2 | |
| -----GAGAATTGTTTGAATACCAAGCGTC----------------------------------------------------------------------------------- | 25 | 1 | |
| -----GAGAATTGTTTGAATACCAAGCGT------------------------------------------------------------------------------------ | 24 | 1 | |
| celegans | ttcttGAGAATTGTTTGAATACCAAGCGTCacacagctcaaatcggaaatgattgaatttttttttgaatttgtgaaatattgaaactgggagattttgaataaagataagag | ||
| ***************************************************************************************************************** | |||
| celegans | .(((((....(((((..((..((.((..((((((((.(((((..((((((......)))))).)))))..)))))......)))..)).))....))..)))))...))))). | 0.920 -18.20 |
| celegans | chromosome:III:7662128:7662240:-1 | intergenic ## {SimpF: WRM0612dH07 -1 fosmid,WRM0623dA11 -1 fosmid,WRM064aE12 -1 fosmid,WRM061cG07 -1 fosmid,WRM0633bE08 -1 fosmid,WRM0635bC03 -1 fosmid,WRM0635cC06 -1 fosmid,WRM0620cB01 -1 fosmid,WRM0613dD12 -1 fosmid,WRM0622cC10 -1 fosmid,WRM067aF03 -1 fosmid,WRM0617bB04 -1 fosmid,WRM0613bE05 -1 fosmid,WRM069bE08 -1 fosmid} |
novel_lenNOK_5varHIGH_nonpairedHIGH_bulgeHIGH (2 loci)
block1500 [novel_lenNOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.057 | no | no | 0.42/0.47 | 19/24/0.50 | 1.5 | 1.0 | 2 | 0 | 1 | 0 | 22 | 3 | 5arm | 3 | nd | 0.33 | 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------GGAAGUU---------------------------------------------------------------------------------- | 1 | novel |
| seed | -----------------------UUUGGAA------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------------------------TGGAAGTTTCGGTTGTTGC----------------------------------------------------------------------- | 19 | 1 | |
| ----------------------CTTTGGAAGTTTCGGTTGTTGCAT--------------------------------------------------------------------- | 24 | 1 | |
| celegans | gtcgaggcgcttgagtctgaagCTTTGGAAGTTTCGGTTGTTGCATctctacttttgagatactaatgatgttgcggtattggtcttaggcttaggcttaggcttaggcttaggc | ||
| ******************************************************************************************************************* | |||
| celegans | (((.(((((((((((((((.(((((.(((....(((((..(((.(((((.......)))))..)))..))....)))......))).))))))))))))))))....)))).))) | 0.420 -34.40 |
| celegans | chromosome:I:15072169:15072283:1 | intergenic |
block3287 [novel_lenNOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.490 | no | no | 0.30/0.35 | 20/26/0.50 | 4.0 | 1.0 | 2 | 0 | 1 | 0 | 6 | 13 | 3arm | 2 | nd | 0.45 | 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------AUACCAA-------------------------- | 1 | novel |
| seed | ---------------------------------------------------------------------UUAUGAA------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------------------------------------------------------------GATACCAAGTTATGAATAACGCCAAT-------- | 26 | 1 | |
| --------------------------------------------------------------------GTTATGAATAACGCCAATTT------ | 20 | 1 | |
| celegans | ttcttggcggcgccctctcgtttcttcttcttttctgacgtttgctgcatttgtcctattGATACCAAGTTATGAATAACGCCAATTTgaggaa | ||
| ********************************************************************************************** | |||
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<................................. | Y66D12A.11 Y66D12A.11 Y66D12A.11 | ||
| celegans | (((((((.((((.....((((..(((..((......((((..((...))..)))).....))....)))..))))....))))...))))))). | 0.540 -14.80 |
| celegans | chromosome:III:11563383:11563476:-1 | Opposite_strand|Boundary_non-coding|Y66D12A.11|Y66D12A.11 ## Y66D12A.11|protein_coding|Y66D12A.11|Y66D12A.11 [Source:RefSeq_peptide;Acc:NP_499491] |
novel_lenNOK_cloningOK_loopOverlap_nonpairedHIGH_bulgeHIGH (2 loci)
block76 [novel_lenNOK_cloningOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.137 | no | no | 0.36/0.36 | 25/28/0.00 | 0.0 | 0.0 | 6 | 0 | 1 | 0 | 25 | -24 | 3arm | 1 | nd | 0.46 | 8 | 7 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------AUCAAAG-------------------------------------- | 6 | novel |
| seed | --------------------------------------AUCAGCC-------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -------------------------GATCAAAGAATGGATCAGCCATTGTTTT------------------ | 28 | 6 | |
| -------------------------------------GATCAGCCATTGTTTTCAGAATTTG--------- | 25 | 1 | |
| celegans | ggatcatttttgactgggacagttgGATCAAAGAATGGATCAGCCATTGTTTTcagaatttgagaattcct | ||
| *********************************************************************** | |||
| <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<............................. | Y71G12B.3 Y71G12B.3 Y71G12B.3 | ||
| celegans | (((..((((((((((((((((((..((((........))))....))))))).)))...))))))))))). | 0.890 -14.70 |
| celegans | chromosome:I:1812932:1813002:-1 | Opposite_strand|Boundary_non-coding|Y71G12B.3|Y71G12B.3 ## Y71G12B.3|protein_coding|Y71G12B.3|Y71G12B.3 [Source:RefSeq_peptide;Acc:NP_490899] ## {SimpF: WRM0635cF03 -1 fosmid} |
block5402 [novel_lenNOK_cloningOK_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.289 | no | no | 0.46/0.46 | 24/26/0.20 | 0.0 | 0.0 | 4 | 0 | 1 | 0 | 20 | -6 | 5arm_loop | 1 | nd | 0.46 | 6 | 5 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------CAAUGAG------------------------------------------------------ | 5 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| --------------------GCAATGAGTTGAGTTGTCTCTTGGCT------------------------------------ | 26 | 4 | |
| --------------------GCAATGAGTTGAGTTGTCTCTTGG-------------------------------------- | 24 | 1 | |
| celegans | ttattggaaatatggcaaaaGCAATGAGTTGAGTTGTCTCTTGGCTgagtactggctcttcttgtgtcgatcttcttatggt | ||
| ********************************************************************************** | |||
| ................................................................................<<<<<<<<<<<< | C24D10.8 C24D10.8 nspd-6 | ||
| celegans | ((((.((((...(((((.(((.((.(((((.(((...(((......))).))))))))))))).)))))...)))).)))). | 0.860 -17.70 |
| celegans | chromosome:IV:5165426:5165507:1 | intergenic ## {SimpF: WRM0633dC11 1 fosmid,C24D10.8 1 Expression_profile} |
novel_lenNOK_cloningOK_shortStem_nonpairedHIGH_bulgeHIGH (2 loci)
block6465 [novel_lenNOK_cloningOK_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.678 | no | no | 0.50/0.57 | 22/26/0.33 | 0.0 | 0.0 | 4 | 0 | 1 | 0 | 3 | 14 | 5arm | 2 | nd | 0.38 | 4 | 6 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----CAUCGAC------------------------------------------------------------------------------------- | 5 | novel |
| seed | ---CCAUCGA-------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ---CCATCGACACCAACTTGACCGTTGTT------------------------------------------------------------------- | 26 | 4 | |
| --CCCATCGACACCAACTTGACCGT----------------------------------------------------------------------- | 23 | 1 | |
| ---CCATCGACACCAACTTGACCGT----------------------------------------------------------------------- | 22 | 1 | |
| celegans | ttcCCATCGACACCAACTTGACCGTTGTTtttggttttttgaaacgagaattcaataaggatttaaaattggtttctgttagtttttttttggaaa | ||
| ************************************************************************************************ | |||
| celegans | ((((....((.((.(((..(((((..(((((..((((((((((.......)))))..)))))..))))))))))...))).)).)).....)))). | 0.550 -13.80 |
| celegans | chromosome:V:5586871:5586966:-1 | intergenic ## {SimpF: WRM0625aB06 -1 fosmid,WRM0616aH11 -1 fosmid,WRM0631cD06 -1 fosmid,WRM0624bF07 -1 fosmid,WRM0628dG08 -1 fosmid} |
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