other hairpins
novel_shortStem_nonpairedHIGH (15 loci)
block4699 [novel_shortStem_nonpairedHIGH]
Hairpin parameters
| no | 0.111 | no | no | 0.60/0.60 | 20/20/1.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 0
| 5
| 3arm
| 1
| nd
| 0.32
| 3
| 1 | 1 | na | na |
| seed | -------------------------------------GCACUCC------------ | 1 | novel |
| | | | CE1 |
| | ------------------------------------TGCACTCCAGCCAGACTTGG | 20 | 1 |
| celegans | taagttttaatgaatggacgttgaatagtattttaaTGCACTCCAGCCAGACTTGG | |
| | ******************************************************** | |
| celegans | ((((((....((..(((((((((((......)))))))...))))..)))))))). | 1.000 -11.40 |
| celegans | chromosome:IV:13710227:13710282:-1 | intergenic ## {SimpF: WRM0625dB04 -1 fosmid,WRM0638cF05 -1 fosmid,WRM0636cA04 -1 fosmid,WRM068cF11 -1 fosmid,WRM0636bD09 -1 fosmid} |
block4828 [novel_shortStem_nonpairedHIGH]
Hairpin parameters
| no | 0.967 | no | no | 0.38/0.38 | 21/21/1.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 1
| 23
| 5arm
| 1
| nd
| 0.33
| 3
| 1 | 1 | na | na |
| seed | --AUUUUCU--------------------------------------------------------------------------------------------------------- | 1 | novel |
| | | | CE1 |
| | -TATTTTCTTTATCATCCGCGC-------------------------------------------------------------------------------------------- | 21 | 1 |
| celegans | tTATTTTCTTTATCATCCGCGCtcatcaaaattcaaaatacaagatagttttacagtattcattttttttaatttgaagattccacagttatcggagaaatttacagttaatga | |
| | ****************************************************************************************************************** | |
| | ---------------------------------------------------------------------------------------------------------------------------- | Y57G11C.49 Y57G11C.49 lgc-8 |
| celegans | (((((..((.((...((((.(((........((((((.((.((((...................)))).)).))))))........)))...))))......)).))..))))) | 0.800 -9.50 |
| celegans | chromosome:IV:14719088:14719201:-1 | Opposite_strand|Intronic_coding|Y57G11C.49|Y57G11C.49 ## Y57G11C.49|protein_coding|lgc-8|Y57G11C.49 [Source:RefSeq_peptide;Acc:NP_001023533] ## {SimpF: WRM0620bA12 -1 fosmid} |
block5430 [novel_shortStem_nonpairedHIGH]
Hairpin parameters
| no | 0.254 | no | no | 0.36/0.36 | 22/22/1.00 | 0.0
| 0.0
| 2
| 0
| 1
| 0
| 3
| 7
| 5arm
| 1
| nd
| 0.32
| 3
| 2 | 1 | na | na |
| seed | ----GGAUAAC------------------------------------------------------------ | 2 | novel |
| | | | CE1 |
| | ---AGGATAACAGCTTAGATTCAGT---------------------------------------------- | 22 | 2 |
| celegans | tcaAGGATAACAGCTTAGATTCAGTctctcaagaaattgattgtctaactgagcaagcatgattcatttgg | |
| | *********************************************************************** | |
| | ...............................................................>>>>>>>>>>>>>>>>>> | F36H12.5 F36H12.5 F36H12.5 |
| celegans | .((((((...((((((...((((((...((((....)))).......)))))).)))).))..)).)))). | 0.910 -12.50 |
block5499 [novel_shortStem_nonpairedHIGH]
Hairpin parameters
| no | 0.709 | no | no | 0.50/0.50 | 22/22/1.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 4
| 7
| 3arm
| 1
| nd
| 0.32
| 3
| 1 | 1 | na | na |
| seed | ------------------------------------------------AUAGUUC------------------ | 1 | novel |
| | | | CE1 |
| | -----------------------------------------------GATAGTTCAGCTGTGAGTGTGC---- | 22 | 1 |
| celegans | attgtcgctagctcgtctttttgtctttatacctgatagtggtctcgGATAGTTCAGCTGTGAGTGTGCcaat | |
| | ************************************************************************* | |
| celegans | ((((.(((..(((((.((..((((((....(((.......)))...))))))...))...)))))))).)))) | 0.940 -12.90 |
| celegans | chromosome:IV:6011493:6011565:1 | intergenic ## {SimpF: WRM0614cH07 1 fosmid,WRM0628aC03 1 fosmid,WRM0610bD01 1 fosmid,WRM0626aE06 1 fosmid,WRM0615cA11 1 fosmid,WRM0615bA12 1 fosmid,WRM0639aA06 1 fosmid,WRM0639dC06 1 fosmid,WRM0637aD02 1 fosmid} |
block5898 [novel_shortStem_nonpairedHIGH]
Hairpin parameters
| no | 0.056 | no | no | 0.20/0.20 | 20/20/1.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 0
| 9
| 3arm
| 1
| nd
| 0.32
| 3
| 1 | 1 | na | na |
| seed | ---------------------------------------------UUUAUUA------------ | 1 | novel |
| | | | CE1 |
| | --------------------------------------------TTTTATTAAAAGCAGAAACT | 20 | 1 |
| celegans | gtttcacagtctttgtttaatttgtagaacattatgtttcacatTTTTATTAAAAGCAGAAACT | |
| | **************************************************************** | |
| | -------------------------------------------------------------------------- | R05A10.3 R05A10.3 R05A10.3 |
| celegans | (((((...((.((((...((..(((..(((.....)))..)))..))...)))).)).))))). | 0.980 -10.40 |
| celegans | chromosome:IV:14174815:14174878:1 | Opposite_strand|Intronic_coding|R05A10.3|R05A10.3 ## R05A10.3|protein_coding|R05A10.3|R05A10.3 [Source:RefSeq_peptide;Acc:NP_502719] ## {SimpF: WRM0626cF11 1 fosmid,WRM0626aC09 1 fosmid,yk364e1 1 RNAi} |
block6054 [novel_shortStem_nonpairedHIGH]
Hairpin parameters
| no | 0.166 | no | no | 0.33/0.33 | 21/21/1.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 2
| 25
| 5arm
| 1
| nd
| 0.43
| 3
| 1 | 1 | na | na |
| seed | ---AUUGUGA------------------------------------------------------------------------------------------ | 1 | novel |
| | | | CE1 |
| | --CATTGTGATGAATGAAGTAGT----------------------------------------------------------------------------- | 21 | 1 |
| celegans | tcCATTGTGATGAATGAAGTAGTacttgattagaataaagaagttgctcgaaaagaatttttgtaaagttctgataatttttactgtttctaaacgttgg | |
| | **************************************************************************************************** | |
| | >>............................................................................................................ | Y73F8A.15 Y73F8A.15 Y73F8A.15 |
| celegans | .(((.(((...(((...(((((......((((((((..(((((((.((.....))))))))).....)))))))).....)))))..)))...))).))) | 0.980 -18.60 |
block6593 [novel_shortStem_nonpairedHIGH]
Hairpin parameters
| no | 0.112 | no | no | 0.60/0.60 | 20/20/1.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 0
| 38
| 3arm
| 4
| nd
| 0.37
| 3
| 1 | 1 | na | na |
| seed | -----------------------------------------------------------------------------------------------UAUGAGC------------ | 1 | novel |
| | | | CE1 |
| | ----------------------------------------------------------------------------------------------GTATGAGCTGGAGCACCGAG | 20 | 1 |
| celegans | ttcgagctgctcacgtttcccttggagtaccccttgtgtagttgtctggatcctttgatcaagcggctgctgtagacgagtagtaccaccattgGTATGAGCTGGAGCACCGAG | |
| | ****************************************************************************************************************** | |
| celegans | .(((...(((((..((((((..(((.((((..((((((((((((.((.((((....)))).))))))))).....)))))..))))..)))..))...))))..))))).))). | 1.000 -36.80 |
| celegans | chromosome:V:8838263:8838376:-1 | intergenic ## {SimpF: WRM067dE11 -1 fosmid,WRM0615bG03 -1 fosmid,WRM0620bE07 -1 fosmid,oe = 1.14 0 CpG,WRM0612bC01 -1 fosmid,WRM067aB04 -1 fosmid,WRM0615dE07 -1 fosmid,WRM0620cD11 -1 fosmid,WRM0615bD11 -1 fosmid,WRM0639aE12 -1 fosmid,WRM0618aE10 -1 fosmid,WRM0626cH02 -1 fosmid} |
block6603 [novel_shortStem_nonpairedHIGH]
Hairpin parameters
| no | 0.112 | no | no | 0.60/0.60 | 20/20/1.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 0
| 38
| 3arm
| 4
| nd
| 0.37
| 3
| 1 | 1 | na | na |
| seed | -----------------------------------------------------------------------------------------------UAUGAGC------------ | 1 | novel |
| | | | CE1 |
| | ----------------------------------------------------------------------------------------------GTATGAGCTGGAGCACCGAG | 20 | 1 |
| celegans | ttcgagctgctcacgtttcccttggagtaccccttgtgtagttgtctggatcctttgatcaagcggctgctgtagacgagtagtaccaccattgGTATGAGCTGGAGCACCGAG | |
| | ****************************************************************************************************************** | |
| celegans | .(((...(((((..((((((..(((.((((..((((((((((((.((.((((....)))).))))))))).....)))))..))))..)))..))...))))..))))).))). | 1.000 -36.80 |
| celegans | chromosome:V:8880357:8880470:-1 | intergenic ## {SimpF: WRM0615aE12 -1 fosmid,WRM0627bB06 -1 fosmid,WRM0611cD09 -1 fosmid,oe = 1.14 0 CpG,WRM0638aA04 -1 fosmid,WRM0625aH11 -1 fosmid,WRM0632cD08 -1 fosmid,WRM0614bC01 -1 fosmid,WRM0639cH11 -1 fosmid,WRM0620dF01 -1 fosmid,WRM0632aF08 -1 fosmid,WRM0636aD03 -1 fosmid,WRM0630cG07 -1 fosmid,WRM0627cF05 -1 fosmid,WRM0628dF12 -1 fosmid,WRM0615bD11 -1 fosmid,WRM063bH07 -1 fosmid,WRM068aG12 -1 fosmid,W09B7.D -1 Expression_profile,WRM0614aB05 -1 fosmid} |
block7617 [novel_shortStem_nonpairedHIGH]
Hairpin parameters
| no | 0.682 | no | no | 0.27/0.27 | 22/22/1.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 3
| 29
| 5arm
| 1
| nd
| 0.36
| 3
| 1 | 1 | na | na |
| seed | ----UUCUUUG------------------------------------------------------------------------------------------------- | 1 | novel |
| | | | CE1 |
| | ---GTTCTTTGCGATTTTAACATAT----------------------------------------------------------------------------------- | 22 | 1 |
| celegans | tttGTTCTTTGCGATTTTAACATATtatatggtatttgttttgtatgcattagtgaagaaccgatcgatatgacgagtagaaaatgttgaaccggagtgggggtcaaa | |
| | ************************************************************************************************************ | |
| celegans | .(((..((..((...((((((((.((......((((((((.(((.((.((..((.....))..))))))).)))))))).)).)))))))).....))..))..))). | 0.510 -18.70 |
| celegans | chromosome:X:1208123:1208230:-1 | intergenic ## {SimpF: WRM0618bB08 -1 fosmid,WRM0631bF01 1 fosmid,WRM0628aH03 -1 fosmid,WRM0629aA11 -1 fosmid,WRM0635cD01 -1 fosmid,WRM0639cB04 -1 fosmid,WRM0617dC12 -1 fosmid,WRM068aG07 -1 fosmid,WRM0621bD10 1 fosmid} |
block8141 [novel_shortStem_nonpairedHIGH]
Hairpin parameters
| no | 0.102 | no | no | 0.62/0.62 | 24/24/1.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 2
| 16
| 5arm
| 2
| nd
| 0.38
| 3
| 1 | 1 | na | na |
| seed | ---UUUGGCC----------------------------------------------------------------------------- | 1 | novel |
| | | | CE1 |
| | --GTTTGGCCAAGCGGACTGGAGCAC------------------------------------------------------------- | 24 | 1 |
| celegans | caGTTTGGCCAAGCGGACTGGAGCACattggaaaaaataattggaaaagattagagatgaggaaagcaaaagccgtggtcgatgctg | |
| | *************************************************************************************** | |
| celegans | ((((((((((..((((.((...((.............(((((......)))))............))...)))))))))))).)))) | 0.410 -18.31 |
| celegans | chromosome:X:1011750:1011836:1 | intergenic ## {SimpF: WRM0636dA04 -1 fosmid,WRM0625cH06 1 fosmid,WRM0621dF04 -1 fosmid,WRM0621bD10 -1 fosmid,WRM0631cA02 -1 fosmid,WRM0625aB08 -1 fosmid,WRM0627dH08 -1 fosmid,WRM0631bF01 -1 fosmid,WRM0625aG07 1 fosmid} |