other hairpins
novel_lenNOK_shortStem_nonpairedHIGH (12 loci)
block3889 [novel_lenNOK_shortStem_nonpairedHIGH]
Hairpin parameters
| no | 0.052 | no | no | 0.58/0.58 | 19/19/0.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 2
| 20
| 5arm
| 1
| nd
| 0.37
| 3
| 1 | 1 | na | na |
| seed | ---AUGAUGG--------------------------------------------------------------------------- | 1 | novel |
| | | | CE1 |
| | --GATGATGGTGGTGGTGGCT---------------------------------------------------------------- | 19 | 1 |
| celegans | tgGATGATGGTGGTGGTGGCTgcaatttttctagttgaaaaaaaacttttcctagttaaaaattggccgtttccagcttaattta | |
| | ************************************************************************************* | |
| | <<<<<<<<<<<<<<<<<<<<<<<<----------------------------------------------------------------------- | C24H11.7 C24H11.7 gbf-1 |
| celegans | (((((...(((((..(((((..((((((((((((..(((((.....)))))))))..)))))))))))))..))).))..))))) | 0.970 -18.40 |
| celegans | chromosome:III:11754332:11754416:1 | Opposite_strand|Boundary_coding|C24H11.7|C24H11.7 ## C24H11.7|protein_coding|gbf-1|GBF1(Golgi-specific Brefeldin-A-resistant Factor 1) homolog family member (gbf-1) [Source:RefSeq_peptide;Acc:NP_499522] |
block4230 [novel_lenNOK_shortStem_nonpairedHIGH]
Hairpin parameters
| no | 0.684 | no | no | 0.44/0.44 | 18/18/0.00 | 0.0
| 0.0
| 2
| 0
| 1
| 0
| 2
| 8
| 3arm
| 1
| nd
| 0.39
| 3
| 2 | 1 | na | na |
| seed | --------------------------------------UGCGUAG------------ | 2 | miR-242 |
| | | | CE1 |
| | -------------------------------------GTGCGTAGAATGAGGTTT-- | 18 | 2 |
| celegans | gtgacatcattcgactccgtttttgatcacagtaaccGTGCGTAGAATGAGGTTTgc | |
| | ********************************************************* | |
| | <<<<<<<<<<<<....................................................... | ZK354.3 ZK354.3 ZK354.3 |
| celegans | ..(((.((((((.((...(((.(((....))).))).....)).)))))).)))... | 0.610 -8.50 |
block4674 [novel_lenNOK_shortStem_nonpairedHIGH]
Hairpin parameters
| no | 0.447 | no | no | 0.58/0.58 | 19/19/0.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 0
| 3
| 3arm
| 1
| nd
| 0.33
| 3
| 1 | 1 | na | na |
| seed | ------------------------------UGGUUUG----------- | 1 | novel |
| | | | CE1 |
| | -----------------------------CTGGTTTGTGACGCAGAGC | 19 | 1 |
| celegans | gctttcgagcaagaaaatttgaatttcagCTGGTTTGTGACGCAGAGC | |
| | ************************************************ | |
| celegans | (((((((.(((((.....(((.....)))....)))))..)).))))) | 0.990 -8.70 |
| celegans | chromosome:IV:13208100:13208147:-1 | intergenic ## {SimpF: WRM0613dC12 -1 fosmid,WRM0620dC10 -1 fosmid,WRM0613cG01 -1 fosmid,WRM0610cE07 -1 fosmid,WRM068aH12 -1 fosmid} |
block4799 [novel_lenNOK_shortStem_nonpairedHIGH]
Hairpin parameters
| no | 0.256 | no | no | 0.37/0.37 | 19/19/0.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 1
| 9
| 3arm
| 1
| nd
| 0.32
| 3
| 1 | 1 | na | na |
| seed | --------------------------------------------UAGAAUC------------ | 1 | novel |
| | | | CE1 |
| | -------------------------------------------TTAGAATCTAGAGTTGAGC- | 19 | 1 |
| celegans | gtttcacctacaaatctaatttatgaagttctcagaattccgaTTAGAATCTAGAGTTGAGCa | |
| | *************************************************************** | |
| celegans | ((((.(((((....(((((((...((.((((...)))))).)))))))...))).)).)))). | 1.000 -9.30 |
block5404 [novel_lenNOK_shortStem_nonpairedHIGH]
Hairpin parameters
| no | 0.792 | no | no | 0.58/0.58 | 26/26/0.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 2
| 19
| 5arm
| 3
| nd
| 0.38
| 3
| 1 | 1 | na | na |
| seed | ---UAAGCCG------------------------------------------------------------------------------------------ | 1 | novel |
| | | | CE1 |
| | --GTAAGCCGACTTGTCCGCCATCGTTG------------------------------------------------------------------------ | 26 | 1 |
| celegans | atGTAAGCCGACTTGTCCGCCATCGTTGtctttcgtttgaggttgttcagagaaacttgctcagaaaactgataaactgacgatttctgtcccattatat | |
| | **************************************************************************************************** | |
| | <<<<<<<<<<<<<<<<<<<<<<<<<<<<.................................................................................. | C24D10.8 C24D10.8 nspd-6 |
| celegans | ((((((...(((..((.((.((...(((((.....((((((...(((......)))...)))))).....)))))..)).))))....)))...)))))) | 0.710 -16.80 |
| celegans | chromosome:IV:5165694:5165793:1 | Opposite_strand|Boundary_non-coding|C24D10.8|C24D10.8 ## C24D10.8|protein_coding|nspd-6|Nematode Specific Peptide family, group D family member (nspd-6) [Source:RefSeq_peptide;Acc:NP_001076664] ## {SimpF: WRM0633dC11 1 fosmid,C24D10.8 1 Expression_profile} |
block5541 [novel_lenNOK_shortStem_nonpairedHIGH]
Hairpin parameters
| no | 0.273 | no | no | 0.53/0.53 | 19/19/0.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 0
| 36
| 5arm
| 1
| nd
| 0.32
| 3
| 1 | 1 | na | na |
| seed | -CGAGGUC------------------------------------------------------------------------------------------------------- | 1 | novel |
| | | | CE1 |
| | TCGAGGTCTGGCTGAAACT-------------------------------------------------------------------------------------------- | 19 | 1 |
| celegans | TCGAGGTCTGGCTGAAACTaaatttcgaattttatattggaataagtttatttttgaaaatggaaattttaattcaaatgtgacatcgtgtatagtctaagcctacattgg | |
| | *************************************************************************************************************** | |
| celegans | .(((.((..((((...((((.((..(((...(((((((.((((.((...((((((......)))))).)).)))).)))))))..))).)).))))...)))).)).))). | 0.930 -20.20 |
block6071 [novel_lenNOK_shortStem_nonpairedHIGH]
Hairpin parameters
| no | 0.085 | no | no | 0.39/0.39 | 18/18/0.00 | 0.0
| 0.0
| 2
| 0
| 1
| 0
| 0
| 13
| 3arm
| 1
| nd
| 0.35
| 2
| 2 | 1 | na | na |
| seed | -----------------------------------------------------UCUAAUC---------- | 2 | novel |
| | | | CE1 |
| | ----------------------------------------------------TTCTAATCGGTCTCAATC | 18 | 2 |
| celegans | attgtactgtttcaaattgttgttaagacaactgtttcttcttaccattcaaTTCTAATCGGTCTCAATC | |
| | ********************************************************************** | |
| celegans | ((((.((((.((..(((((.((.(((((...........))))).))..)))))..)).))))..)))). | 1.000 -9.50 |
block7071 [novel_lenNOK_shortStem_nonpairedHIGH]
Hairpin parameters
| no | 0.631 | no | no | 0.28/0.28 | 18/18/0.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 2
| 14
| 5arm
| 1
| nd
| 0.44
| 3
| 1 | 1 | na | na |
| seed | ---AGAUAAC---------------------------------------------------------------------- | 1 | novel |
| | | | CE1 |
| | --GAGATAACCAAGAATAAA------------------------------------------------------------ | 18 | 1 |
| celegans | acGAGATAACCAAGAATAAAgtattgaagcatcgtgttcggaactcaatcgatcaaacaataaattattgattattgcga | |
| | ******************************************************************************** | |
| celegans | .((..((((.((...((((..(((((....((((...............))))....)))))..)))))).))))..)). | 0.840 -9.06 |
block7185 [novel_lenNOK_shortStem_nonpairedHIGH]
Hairpin parameters
| no | 0.291 | no | no | 0.28/0.28 | 25/25/0.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 1
| 26
| 3arm
| 1
| nd
| 0.32
| 3
| 1 | 1 | na | na |
| seed | -----------------------------------------------------------------------------------AUAGAAA------------------ | 1 | novel |
| | | | CE1 |
| | ----------------------------------------------------------------------------------GATAGAAATTTGAATAATGCTCAAC- | 25 | 1 |
| celegans | gttgaaattacagtaagcctatcactaacctcacatgctcagtttgactcgaaaagtcgcacgtacaaaaaacatgaactagGATAGAAATTTGAATAATGCTCAACa | |
| | ************************************************************************************************************ | |
| celegans | (((((.((((...((((.(((((.(((......((((.....((((((.(((....)))...)).))))...))))...))))))))...))))..))))..))))). | 0.650 -16.10 |
| celegans | chromosome:V:7731189:7731296:1 | intergenic ## {SimpF: WRM061bB01 1 fosmid,WRM0636cH11 1 fosmid,WRM0632bE05 1 fosmid,WRM0633cE08 1 fosmid,WRM0624aH06 1 fosmid,WRM0637aH08 1 fosmid,WRM0611aE12 1 fosmid,WRM0636dD02 1 fosmid} |
novel_loopOverlap_nonpairedHIGH (11 loci)
block161 [novel_loopOverlap_nonpairedHIGH]
Hairpin parameters
| no | 0.040 | no | no | 0.41/0.41 | 22/22/1.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 12
| -3
| 3arm_loop
| 2
| nd
| 0.32
| 2
| 1 | 1 | na | na |
| seed | ----------------------------------CUGAUAG-------------------------- | 1 | novel |
| | | | CE1 |
| | ---------------------------------ACTGATAGTGAGTGATGGATCT------------ | 22 | 1 |
| celegans | tcggtggagcaccatgatccggccagttagtccACTGATAGTGAGTGATGGATCTtgttttaccggc | |
| | ******************************************************************* | |
| celegans | (((((((((((....((((((..((.((((((....)))..))).)).)))))).))))))))))). | 0.980 -23.30 |
| celegans | chromosome:I:3970304:3970370:-1 | intergenic ## {SimpF: WRM0624cA09 -1 fosmid,WRM0610cH11 -1 fosmid,WRM069aC02 -1 fosmid,WRM0629bF09 -1 fosmid,WRM0641bF06 -1 fosmid} |