| seed | --------------------------------------------------------------------------------------AUCACAG------------------------------------------------------------- | 17486 | miR-43 |
| seed | ---------------------------------------------------------------------------------------UCACAGC------------------------------------------------------------ | 215 | novel |
| seed | ------------------------------------------------------------------------------------------CAGCCAG--------------------------------------------------------- | 171 | novel |
| seed | ----------------------------------------------------------------------------------------CACAGCC----------------------------------------------------------- | 9 | novel |
| seed | -------------------------------------------------------------------------------------------AGCCAGC-------------------------------------------------------- | 7 | novel |
| seed | -------------------------------------------------------------------------------------UAUCACA-------------------------------------------------------------- | 5 | novel |
| | | | CE1 |
| cel-miR-2 | -------------------------------------------------------------------------------------TATCACAGCCAGCTT--TGAT---------GTGC----------------------------------- | 23 | 16893 |
| | -------------------------------------------------------------------------------------TATCACAGCCAGCTT--TGAT---------GTG------------------------------------ | 22 | 258 |
| | --------------------------------------------------------------------------------------ATCACAGCCAGCTT--TGAT---------GTGC----------------------------------- | 22 | 207 |
| | -----------------------------------------------------------------------------------------ACAGCCAGCTT--TGAT---------GTGC----------------------------------- | 19 | 165 |
| | -------------------------------------------------------------------------------------TATCACAGCCAGCTT--TGA------------------------------------------------- | 18 | 159 |
| | -------------------------------------------------------------------------------------TATCACAGCCAGCTT--TGAT---------GTGCT---------------------------------- | 24 | 68 |
| | -------------------------------------------------------------------------------------TATCACAGCCAGCTT--TGAT---------G-------------------------------------- | 20 | 54 |
| | -------------------------------------------------------------------------------------TATCACAGCCAGCTT--TGAT---------GT------------------------------------- | 21 | 45 |
| | -------------------------------------------------------------------------------------TATCACAGCCAGCTT--TGAT------------------------------------------------ | 19 | 9 |
| | ------------------------------------------------------------------------------------------CAGCCAGCTT--TGAT---------GTGC----------------------------------- | 18 | 7 |
| | ---------------------------------------------------------------------------------------TCACAGCCAGCTT--TGAT---------GTGC----------------------------------- | 21 | 5 |
| | -----------------------------------------------------------------------------------------ACAGCCAGCTT--TGAT---------GTG------------------------------------ | 18 | 5 |
| | --------------------------------------------------------------------------------------ATCACAGCCAGCTT--TGAT---------GTG------------------------------------ | 21 | 3 |
| | ---------------------------------------------------------------------------------------TCACAGCCAGCTT--TGAT---------GTGCT---------------------------------- | 22 | 3 |
| | ------------------------------------------------------------------------------------ATATCACAGCCAGCTT--TGAT---------GTGC----------------------------------- | 24 | 3 |
| | ------------------------------------------------------------------------------------ATATCACAGCCAGCTT--TGAT---------GTG------------------------------------ | 23 | 2 |
| | --------------------------------------------------------------------------------------ATCACAGCCAGCTT--TGAT---------GTGCT---------------------------------- | 23 | 2 |
| | --------------------------------------------------------------------------------------ATCACAGCCAGCTT--TGAT------------------------------------------------ | 18 | 1 |
| | ---------------------------------------------------------------------------------------TCACAGCCAGCTT--TGAT---------GTG------------------------------------ | 20 | 1 |
| | -----------------------------------------------------------------------------------------ACAGCCAGCTT--TGAT---------GTGCT---------------------------------- | 20 | 1 |
| | --------------------------------------------------------------------------------------ATCACAGCCAGCTT--TGAT---------GT------------------------------------- | 20 | 1 |
| | --------------------------------------------------------------------------------------ATCACAGCCAGCTT--TGAT---------G-------------------------------------- | 19 | 1 |
| celegans | ----------TAAACAGTATA---------CAGAAAGC----CATCAAAGCGGTGGTTGATGTGTTG--CAAATTATGACTTTCATATCACAGCCAGCTT--TGAT---------GTGCTGCCTGTTGCACTGT-------------------- | |
| cjaponica | AAATAA---CTGAAACGCATTG-----------GTAGCT---CGTCGAA-CTGCAGCTGATCTGCCG----CTCTAAAATGGACATATCACAGCCAGCTT--TGAT---------GTGCTACCTTTTCAGCTGTTT------------------ | |
| cbrenneri | --CTGA---TTCCCATGTACAGTGAACCTCCAGAAAGCA---CGTCAAAGTGGCGCGTGTTATGTCGGAAATATGAAAAGGATCATATCACAGCCAGCTT--TGAT---------GTGCTT-------GACTGTGTTCAGCTAGGAAATGTCGG | |
| ppacificus | GGAAAGATATGAACGAGTATAG------ATCACGTAGCTGACCGGCAGTTCTGCGCGTGATGCGTGG--TAGTTATAAGCATCCGTATCACAGCCGGACTGCTGATCTGCCGATCTTGCTTCTTCTCATAGTATACTCC--------------- | |
| cremanei | GGATGAATATTCCATACCATAGTA----TACGGAAAGCC---CGTCAAAGTGGCTCGTGTTATGTTG--AATCTTGAAGTAATCATATCACAGCCAGCTT--TGAT---------GTGCTTCCTGAAGTACTATCCTTTGTCACTTGTCATTC- | |
| | * *** * * * ** * * * * ********** * * **** **** * * | |
| | +++++ +++++++++++ ++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++++++++++++ ++++ +++++++++++++++++++ +++++ | F16A11.3c F16A11.3 ppfr-1 |
| | +++++ +++++++++++ ++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++++++++++++ ++++ +++++++++++++++++++ +++++ | F16A11.3d F16A11.3 ppfr-1 |
| | +++++ +++++++++++ ++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++++++++++++ ++++ +++++++++++++++++++ +++++ | F16A11.3a F16A11.3 ppfr-1 |
| | +++++ +++++++++++ ++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++++++++++++ ++++ +++++++++++++++++++ +++++ | F16A11.3b F16A11.3 ppfr-1 |
| celegans | ...(((((..( (((..((( ((((((((((((...(((((((..( ((.....)).)...)))))))..))).)))) )))) ).)))..))))...))))) | 1.000 -38.40 |
| cjaponica | (((((. ((((((......( (((((. ((((((( (((..((((((.((((( ........))).)).))))..))))).)) )))) ).)))))).)))))).))))) | 0.999 -32.40 |
| cbrenneri | (((( ((((...((....(((((...(((.((((( ((((((((((((..(((.((((((..............)).)))).))).)))).))) )))) )))))) ..))).)))))))..)))...))))) | 0.986 -44.24 |
| ppacificus | (((....(((((..(((((.(( (((.....((.((.(((((((((.((..((((((((.(( (.((.....))))))))))))).)).))))))))).)).)).))))))))))....)))))......))) | 0.992 -47.10 |
| cremanei | ((((((......((....(((((( (.(((.((((. (((((((((((((.(((.((((... ..............)))).)))))))).))) )))) ).)))).)))..)))))))....)).......)))))) | 0.958 -40.15 |