other hairpins
block5520 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.197 | no | no | 0.21/0.21 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 20 | 2 | 5arm | 1 | nd | 0.11 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------ACAUCUU-------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| --------------------TACATCTTGCATTTTAAAT--------------------------------------------------- | 19 | 1 | |
| celegans | acattttagtggtaaaacatTACATCTTGCATTTTAAATagagatttatttaaatttatgtaaaaaactgtgataatcccagaaattgta | ||
| ****************************************************************************************** | |||
| ---------------------------------------------------------------------------------------------------- | Y73B6BL.26 Y73B6BL.26 lgc-10 | ||
| celegans | (((.(((..(((......((((((..(((((((((((((((....)))))))))...)))))).....))))))....))).))).))). | 0.890 -12.60 |
| celegans | chromosome:IV:6448112:6448201:1 | Opposite_strand|Intronic_coding|Y73B6BL.26|Y73B6BL.26 ## Y73B6BL.26|protein_coding|lgc-10|Y73B6BL.26 [Source:RefSeq_peptide;Acc:NP_500985] ## {SimpF: WRM0637bC06 1 fosmid,WRM0634cA05 1 fosmid} |
block5914 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.828 | no | no | 0.44/0.45 | 18/20/0.67 | 0.0 | 0.7 | 3 | 0 | 1 | 0 | 11 | 5 | 5arm | 1 | nd | 0.28 | 2 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------AGACUAG---------------------------------------------------------------- | 3 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------TAGACTAGGCCCTTTTAGAG---------------------------------------------------- | 20 | 2 | |
| -----------TAGACTAGGCCCTTTTAG------------------------------------------------------ | 18 | 1 | |
| celegans | gctaaaattaaTAGACTAGGCCCTTTTAGAGagagatagtgcttctaaaaccttgaaaaatgcttatcaaacataatttggtg | ||
| *********************************************************************************** | |||
| ..................................................<<<<<<<<<<<<<<<<<<<<<...................... | Y64G10A.99 Y64G10A.99 21ur-4168 | ||
| celegans | ((((((.......((.(((((..((((.(((..(((.......))).....))).))))..)))))))........)))))). | 0.680 -9.46 |
| celegans | chromosome:IV:14298396:14298478:1 | intergenic ## {SimpF: WRM0634bA12 1 fosmid,WRM0618cA09 1 fosmid,WRM0610dE08 1 fosmid} |
block6258 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.397 | no | no | 0.36/0.36 | 25/25/0.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 6 | 12 | 5arm | 2 | nd | 0.24 | 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------UAAAGGU------------------------------------------------------------------------------ | 2 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------GTAAAGGTTGTTGGATGATTGTATG------------------------------------------------------------- | 25 | 2 | |
| celegans | tcttctGTAAAGGTTGTTGGATGATTGTATGagtccgagaagcacttgagccactaggaacgtgctaggaatgcagcgggtttgcattgaag | ||
| ******************************************************************************************** | |||
| celegans | .(((((((.(((.((((((.((..(((((((..(((.((..((......))..)).))).))))).))..)).)))))).))))))..)))) | 0.990 -22.30 |
| celegans | chromosome:IV:16930175:16930266:1 | intergenic ## {SimpF: WRM0621dF01 1 fosmid} |
block6646 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.065 | no | no | 0.32/0.32 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 34 | 4 | 3arm | 1 | nd | 0.16 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------UGAAUUG--------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------------------------------TTGAATTGAGTTGTAGATC---------------------------------- | 19 | 1 | |
| celegans | ttcacttgtttctctgcatattatcaatcctatttacaattcagttagtgagagtaatgaacttTTGAATTGAGTTGTAGATCaagaatacatgaaaataattttgagtttaaatga | ||
| ********************************************************************************************************************* | |||
| celegans | .(((.(((...(((....((((.(((((.(((((((((((((((((...((((((.....)))))).)))))))))))))))..)).))...))).)))).....)))..))).))) | 0.810 -22.90 |
| celegans | chromosome:V:10191314:10191430:-1 | intergenic ## {SimpF: WRM066bG06 -1 fosmid,WRM0632dF04 -1 fosmid,WRM065dD10 -1 fosmid,WRM0636dD08 -1 fosmid,WRM0626cH03 -1 fosmid,WRM0638cG12 -1 fosmid,WRM0617dF09 -1 fosmid} |
block6760 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.099 | no | no | 0.26/0.26 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 13 | 5 | 3arm | 1 | nd | 0.21 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------UUUGUUU------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------------------------ATTTGTTTACAAGGAATAG------------- | 19 | 1 | |
| celegans | tatgaaaagacttttattctcattttaagatgaacaattttctcaaaaaaatgtttgaATTTGTTTACAAGGAATAGaaagtcgaacata | ||
| ****************************************************************************************** | |||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>........................................................... | M04G12.4b.2 M04G12.4 somi-1 | ||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>........................................................... | M04G12.4b.1 M04G12.4 somi-1 | ||
| celegans | ((((....((((((((((((..........(((((((.....(((((......)))))..)))))))...))))))))).)))...)))) | 0.420 -13.92 |
| celegans | chromosome:V:13386001:13386090:-1 | intergenic ## {SimpF: WRM0638aE07 -1 fosmid,WRM064cH02 -1 fosmid,WRM0635dF12 -1 fosmid,WRM068dF01 -1 fosmid,WRM0632aC10 -1 fosmid,WRM0627aB06 -1 fosmid,WRM0631bA06 -1 fosmid,WRM0636bA06 -1 fosmid,WRM0635dB07 -1 fosmid,WRM0637cC04 -1 fosmid,WRM066bH03 -1 fosmid} |
block7012 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.208 | no | no | 0.40/0.45 | 22/25/0.67 | 0.0 | 1.0 | 3 | 0 | 1 | 0 | 9 | 6 | 3arm | 1 | nd | 0.28 | 3 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------UUGCAGA-------------------------- | 3 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ---------------------------------------------------------------GTTGCAGATAACTGGTACAAGG------------ | 22 | 2 | |
| ---------------------------------------------------------------GTTGCAGATAACTGGTACAAGGATT--------- | 25 | 1 | |
| celegans | tcaaattaaaacttgagtagatatcgtgtatgaggtttcacaacccttccatctttaaaacccGTTGCAGATAACTGGTACAAGGATTatttctgaa | ||
| ************************************************************************************************* | |||
| celegans | (((((.(((..((((..(((.((((.((((((.(((((...................)))))))).))))))).)))...))))..))).)).))). | 0.970 -15.31 |
| celegans | chromosome:V:20379578:20379674:-1 | intergenic |
block7068 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.070 | no | no | 0.22/0.22 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 17 | 14 | 5arm | 3 | nd | 0.17 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------UUUUGAG------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| -----------------GTTTTGAGTTTTTTGTTT-------------------------------------------------------------------------- | 18 | 1 | |
| celegans | tgctagtttgtttcgaaGTTTTGAGTTTTTTGTTTcaattcgttttgtggtgccgaaaatgcacaaaaaattgaaaaacggatttgctgaaaatttgaattttgggcaa | ||
| ************************************************************************************************************* | |||
| celegans | ((((.......(((.(((((((.(((..((((((((((((..(((((((............))))))))))))))..)))))...))).)))))))))).....)))). | 1.000 -24.40 |
| celegans | chromosome:V:1967403:1967511:1 | intergenic ## {SimpF: WRM0638aE01 1 fosmid,WRM066aF01 1 fosmid,WRM0630cF10 1 fosmid} |
block7636 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.158 | no | no | 0.31/0.31 | 26/26/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 12 | 6 | 3arm | 1 | nd | 0.19 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------UUCACAA------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------------------------------------------------------GTTCACAAGGATTTTATATGTTCTGT------------ | 26 | 1 | |
| celegans | ctcgctttgatactcaaacagaaaaaatcaaaaattttttgatctttattcattatacaatttaGTTCACAAGGATTTTATATGTTCTGTttatgaagacga | ||
| ****************************************************************************************************** | |||
| celegans | .(((((((.(((....(((((((...((..((((((((((((.((..(((........)))..)).))).)))))))))..)).)))))))))))))).))) | 0.840 -15.20 |
| celegans | chromosome:X:1643998:1644099:-1 | intergenic ## {SimpF: WRM0619cB06 -1 fosmid,WRM0637cC01 -1 fosmid,WRM0635bH10 -1 fosmid,WRM0634dF02 -1 fosmid,WRM061aG07 -1 fosmid,WRM0626bE10 -1 fosmid,WRM0626cF12 -1 fosmid,WRM0624cB10 -1 fosmid,WRM0641aB04 -1 fosmid,WRM0614bA02 -1 fosmid} |
block7894 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.186 | no | no | 0.33/0.33 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 29 | 0 | 3arm | 1 | nd | 0.17 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------AUGAGAA--------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ------------------------------------------------------------GATGAGAAGGACATTTTT----------------------------- | 18 | 1 | |
| celegans | gattaaagcagtcaggcaagtgttttgagaaattccttcctaataagttgttcatttcaaGATGAGAAGGACATTTTTttaaaactatctcaacagtgacattaatt | ||
| *********************************************************************************************************** | |||
| celegans | ..........((((....((.(((((((((((.((((((............(((((....)))))))))))...)))))))))))...))......))))....... | 0.590 -19.40 |
| celegans | chromosome:X:12216110:12216216:-1 | intergenic ## {SimpF: WRM0620dA11 -1 fosmid,WRM0615bE12 -1 fosmid} |
block8093 [novel_lenNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.258 | no | no | 0.47/0.47 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 16 | 6 | 5arm | 1 | nd | 0.16 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------UAGAGGA------------------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| CE1 | |||
| ----------------GTAGAGGAACAAAGAGTGG------------------------------------------------------------------------------------- | 19 | 1 | |
| celegans | acgattgaaatcctaaGTAGAGGAACAAAGAGTGGaaagacaactactatctaattataaattattttcattcgtcatttcgattttttgtctttattgcctgataattggaaaagattg | ||
| ************************************************************************************************************************ | |||
| celegans | .(((((....(((..(((((((..(((((((((.(((((((................................))).)))).))))))))))))))))...........)))...))))) | 0.530 -19.47 |
| celegans | chromosome:X:17253869:17253988:-1 | intergenic ## {SimpF: WRM0627dB01 -1 fosmid,WRM0639dB09 -1 fosmid,WRM0611aD03 -1 fosmid} |
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