other hairpins
novel_loopOverlap_nonpairedHIGH (11 loci)
block3240 [novel_loopOverlap_nonpairedHIGH]
Hairpin parameters
| no | 0.231 | no | no | 0.48/0.48 | 21/21/1.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 18
| -3
| 3arm_loop
| 1
| 7
| 0.33
| 3
| 1 | 1 | na | na |
| seed | ------------------------------------GUGUCUC------------------------------- | 1 | novel |
| | | | CE1 |
| | -----------------------------------AGTGTCTCAATCGAGTTTCCG------------------ | 21 | 1 |
| celegans | agcctaagaatgatccaacgagaaaagcggtgaccAGTGTCTCAATCGAGTTTCCGtcggggatctctgatcct | |
| | ************************************************************************** | |
| | >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++ | Y39A1A.2 Y39A1A.2 Y39A1A.2 |
| celegans | ......(((..(((((.(((.((((..(((((((....)))...))))..)))))))...))))))))...... | 0.950 -18.80 |
| celegans | chromosome:III:10602627:10602700:-1 | Same_strand|Intronic_coding|Y39A1A.2|Y39A1A.2 ## Y39A1A.2|protein_coding|Y39A1A.2|Y39A1A.2 [Source:RefSeq_peptide;Acc:NP_499336] ## {SimpF: Y39A1A.2 -1 Expression_profile} |
block3306 [novel_loopOverlap_nonpairedHIGH]
Hairpin parameters
| no | 0.309 | no | no | 0.50/0.50 | 22/22/1.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 37
| -3
| 3arm_loop
| 1
| nd
| 0.32
| 3
| 1 | 1 | na | na |
| seed | ---------------------------------------------------------UUUGUGG--------------------------------------------------- | 1 | novel |
| | | | CE1 |
| | --------------------------------------------------------GTTTGTGGCATCGTTCGAGTAG------------------------------------- | 22 | 1 |
| celegans | gtggtggtggtggtggtggtggtctagcagttgtgtcgttgagctgccacgccgacGTTTGTGGCATCGTTCGAGTAGagatagtctaacaccgaaaaaaaacaccaaattagcg | |
| | ******************************************************************************************************************* | |
| | <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<..................................................... | Y79H2A.11 Y79H2A.11 zyg-8 |
| celegans | ((..(((((.......(((((...(((...((((.((.(((((((((((((........)))))))..))))))...)).)))).))).)))))........))))).....)). | 0.690 -33.26 |
| celegans | chromosome:III:12061572:12061686:-1 | Opposite_strand|Boundary_non-coding|Y79H2A.11|Y79H2A.11 ## Y79H2A.11|protein_coding|zyg-8|The zyg-8 gene encodes a protein with a doublecortin-like domain and a protein kinase domain. mutations of zyg-8 impair mitosis at the one-cell embryonic stage, which is normally asymmetrical, but which fails to show proper asymmetry in zyg-8 mutant embryos. [Source: WormBase] |
block3394 [novel_loopOverlap_nonpairedHIGH]
Hairpin parameters
| no | 0.771 | no | no | 0.45/0.45 | 22/22/1.00 | 0.0
| 0.0
| 2
| 0
| 1
| 0
| 15
| -1
| 5arm_loop
| 1
| nd
| 0.41
| 3
| 2 | 1 | na | na |
| seed | ----------------AUGGACA------------------------------------------------------------ | 2 | novel |
| | | | CE1 |
| | ---------------CATGGACATAAGAGCAAAGCGT---------------------------------------------- | 22 | 2 |
| celegans | gccagctgggaccccCATGGACATAAGAGCAAAGCGTacaattcctgttgatcctcgtgatccggattccaaatcagcttagc | |
| | *********************************************************************************** | |
| celegans | ((.((((((((..((...((((((..(((...((((.........))))....)))))).)))))..)))....)))))..)) | 0.440 -15.40 |
block4249 [novel_loopOverlap_nonpairedHIGH]
Hairpin parameters
| no | 0.036 | no | no | 0.40/0.40 | 20/20/1.00 | 0.0
| 0.0
| 3
| 0
| 1
| 0
| 21
| -4
| 3arm_loop
| 1
| nd
| 0.35
| 3
| 3 | 1 | na | na |
| seed | -------------------------------------------------------------UAUGCGU--------------------------------- | 3 | novel |
| | | | CE1 |
| | ------------------------------------------------------------TTATGCGTCCCTAAAAACTG--------------------- | 20 | 3 |
| celegans | gtgatctataattttctgtttcaatatgtttgtttaatgggatgctattcagtgtttcagTTATGCGTCCCTAAAAACTGatattcaaagatggaattaca | |
| | ***************************************************************************************************** | |
| celegans | (((((.........(((((((....(((((.((((...(((((((...................)))))))...)))).)))))....)))))))))))). | 0.990 -21.71 |
block5529 [novel_loopOverlap_nonpairedHIGH]
Hairpin parameters
| no | 0.159 | no | no | 0.45/0.45 | 20/20/1.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 42
| -2
| 3arm_loop
| 3
| nd
| 0.35
| 3
| 1 | 1 | na | na |
| seed | ---------------------------------------------------------AGAAGAA------------------------------------------------------ | 1 | novel |
| | | | CE1 |
| | --------------------------------------------------------AAGAAGAACAGCTTGTCACG------------------------------------------ | 20 | 1 |
| celegans | tgatatgattaatagaacagatgattaaaacgggaaatccacaggatgggttttacAAGAAGAACAGCTTGTCACGgaggtacccatttgcatcatcgtgaagtgattgggctgtcaa | |
| | ********************************************************************************************************************** | |
| celegans | (((((((((((.....((.((((((..(((.(((...((((((((.((..((((....))))..)).)))))...)))....))).)))..))))))))....))))))...))))). | 0.950 -26.30 |
| celegans | chromosome:IV:6539139:6539256:1 | intergenic ## {SimpF: WRM0628aE01 1 fosmid,WRM0631dD07 1 fosmid,WRM0615cA12 1 fosmid,WRM0624aF05 1 fosmid,WRM0625dB01 1 fosmid,WRM0613dD06 1 fosmid} |
block6769 [novel_loopOverlap_nonpairedHIGH]
Hairpin parameters
| no | 0.019 | no | no | 0.50/0.50 | 22/22/1.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 6
| -2
| 5arm_loop
| 1
| nd
| 0.36
| 3
| 1 | 1 | na | na |
| seed | -------AUUCUCU------------------------------------------------ | 1 | novel |
| | | | CE1 |
| | ------GATTCTCTCGTGTTCAGCTGTC---------------------------------- | 22 | 1 |
| celegans | caaattGATTCTCTCGTGTTCAGCTGTCatcatcagaggaatcgagcaaagatctagtttga | |
| | ************************************************************** | |
| celegans | (((((((..(((((((.((((..(((.......)))..))))))))...)))..))))))). | 1.000 -17.10 |
| celegans | chromosome:V:13931632:13931693:-1 | intergenic ## {SimpF: WRM0620cE11 -1 fosmid,WRM0634aF11 -1 fosmid,WRM0628bE12 -1 fosmid,WRM0635bB01 -1 fosmid,WRM0622dC05 -1 fosmid} |
block7375 [novel_loopOverlap_nonpairedHIGH]
Hairpin parameters
| no | 0.160 | no | no | 0.36/0.36 | 22/22/1.00 | 0.0
| 0.0
| 2
| 0
| 1
| 0
| 17
| -1
| 5arm_loop
| 1
| nd
| 0.36
| 3
| 2 | 1 | na | na |
| seed | ------------------CAUGAGG------------------------------------------------------------------ | 2 | novel |
| | | | CE1 |
| | -----------------TCATGAGGAACCAACTGAAATT---------------------------------------------------- | 22 | 2 |
| celegans | tccgtcgcggctggtttTCATGAGGAACCAACTGAAATTaattttatttattttaaggttaagtgtggaaatttggcttggcttaccggaa | |
| | ******************************************************************************************* | |
| | <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-------------------------------------------------------<<<<<<<<<< | C15H11.4 C15H11.4 dhs-22 |
| celegans | ((((..((((((((((((((((...((((...((((((...........)))))).))))...)))))))))).))))..))....)))). | 0.670 -19.90 |
| celegans | chromosome:V:14420343:14420433:1 | Opposite_strand|Boundary_coding|C15H11.4|C15H11.4 ## C15H11.4|protein_coding|dhs-22|dhs-22 encodes a short-chain dehydrogenase predicted to be mitochondrial. [Source: WormBase] ## {SimpF: WRM0614dC12 1 fosmid,WRM0615aB07 1 fosmid,WRM0630cB06 1 fosmid,CEOP5416 -1 Operon,WRM0612dC05 1 fosmid,WRM0617aH02 1 fosmid,yk176b4 1 RNAi,WRM0623cD09 1 fosmid,WRM0617cF09 1 fosmid} |
block7564 [novel_loopOverlap_nonpairedHIGH]
Hairpin parameters
| no | 0.284 | no | no | 0.45/0.45 | 22/22/1.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 14
| -1
| 3arm
| 1
| nd
| 0.32
| 3
| 1 | 1 | na | na |
| seed | -----------------------------------------------------------------UGUUGGU---------------------------- | 1 | novel |
| | | | CE1 |
| | ----------------------------------------------------------------GTGTTGGTGGGGTGTTAAATAG-------------- | 22 | 1 |
| celegans | attcgtcgaaaaagtgtgcgttttcatcatataaatagaaaaaaagaaagagagagagtaatatGTGTTGGTGGGGTGTTAAATAGcacaagatacgaat | |
| | **************************************************************************************************** | |
| | ........................................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | Y113G7B.23 Y113G7B.23 psa-1 |
| celegans | ((((((........(((((.((..((((.(((.((((............................)))).))).))))..))...)))))....)))))) | 0.650 -13.19 |
| celegans | chromosome:V:20234565:20234664:1 | Opposite_strand|Boundary_non-coding|Y113G7B.23|Y113G7B.23 ## Y113G7B.23|protein_coding|psa-1|psa-1 encodes an ortholog of SWI3, a component of the SWI/SNF complex that is conserved from yeast to mammals and that is involved in chromatin remodeling. psa-1 is probably required during mitosis of the T cells for asymmetric cell division, and in addition, is required for embryonic and larval development, as well as normal levels of fertility. psa-1 exhibits strong genetic interactions with lin-35/Rb, as psa-1 larval lethality and sterility at 20 degrees C are greatly enhanced in lin-35.psa-1 double mutants. [Source: WormBase] ## {SimpF: CEOP5508 -1 Operon} |
block8040 [novel_loopOverlap_nonpairedHIGH]
Hairpin parameters
| no | 0.228 | no | no | 0.38/0.38 | 21/21/1.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 35
| -2
| 5arm_loop
| 2
| nd
| 0.48
| 3
| 1 | 1 | na | na |
| seed | ------------------------------------UACGAGU--------------------------------------------------------------------- | 1 | novel |
| | | | CE1 |
| | -----------------------------------ATACGAGTTGCAGTTGTTGTT-------------------------------------------------------- | 21 | 1 |
| celegans | ttgttatcatatcgcttgtacttcttcttttctttATACGAGTTGCAGTTGTTGTTagttgatgacgaaacgagtgtgagtaggcgagtagaagccagggggggggagcagg | |
| | **************************************************************************************************************** | |
| celegans | (((((.((...((.((((..(((((.(((.(((((((((..(((...((..(((.....)))..))..)))..))))))..))).))).))))).)))).)).)).))))). | 0.440 -29.20 |
block8041 [novel_loopOverlap_nonpairedHIGH]
Hairpin parameters
| no | 0.454 | no | no | 0.38/0.38 | 21/21/1.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 38
| -2
| 5arm_loop
| 2
| nd
| 0.48
| 3
| 1 | 1 | na | na |
| seed | ---------------------------------------UACGAGU------------------------------------------------------------------------ | 1 | novel |
| | | | CE1 |
| | --------------------------------------ATACGAGTTGCAGTTGTTGTT----------------------------------------------------------- | 21 | 1 |
| celegans | gattttttatcatatcgcttgtacttctttttttctttATACGAGTTGCAGTTGTTGTTagttgatgacgagacgagtgtgagtagacgagtagaagccagcggggggagcaggggtt | |
| | ********************************************************************************************************************** | |
| celegans | (((..((..((...(((((....(((((.(((.(((((((((..(((...((..(((.....)))..))..)))..))))))..))).))).)))))..)))))...))..))..))) | 0.980 -27.60 |