| seed | ----------------------------------------------------------------------------------GAGAUCA----------------------------------------------------- | 9046 | miR-80/81/82 |
| seed | -----------------------------------------------------------------------------------AGAUCAU---------------------------------------------------- | 66 | novel |
| seed | --------------------------------------------------------------------------------------UCAUCGU------------------------------------------------- | 63 | novel |
| seed | -------------------------------------------------------------------------------------AUCAUCG-------------------------------------------------- | 8 | miR-392 |
| seed | ------------------------------------------------------------------------------------GAUCAUC--------------------------------------------------- | 1 | novel |
| | | | CE1 |
| cel-miR-81 | ---------------------------------------------------------------------------------TGAGATCATCGTGAAAGCTAGT--------------------------------------- | 22 | 8025 |
| | ---------------------------------------------------------------------------------TGAGATCATCGTGAAAGCTAG---------------------------------------- | 21 | 437 |
| | ---------------------------------------------------------------------------------TGAGATCATCGTGAAAGCTAGTT-------------------------------------- | 23 | 339 |
| | ---------------------------------------------------------------------------------TGAGATCATCGTGAAAGCT------------------------------------------ | 19 | 178 |
| | ----------------------------------------------------------------------------------GAGATCATCGTGAAAGCTAGT--------------------------------------- | 21 | 61 |
| | -------------------------------------------------------------------------------------ATCATCGTGAAAGCTAGT--------------------------------------- | 18 | 60 |
| | ---------------------------------------------------------------------------------TGAGATCATCGTGAAAGC------------------------------------------- | 18 | 53 |
| | ---------------------------------------------------------------------------------TGAGATCATCGTGAAAGCTA----------------------------------------- | 20 | 14 |
| | ------------------------------------------------------------------------------------GATCATCGTGAAAGCTAGT--------------------------------------- | 19 | 8 |
| | -------------------------------------------------------------------------------------ATCATCGTGAAAGCTAGTT-------------------------------------- | 19 | 3 |
| | ----------------------------------------------------------------------------------GAGATCATCGTGAAAGCTAG---------------------------------------- | 20 | 3 |
| | ----------------------------------------------------------------------------------GAGATCATCGTGAAAGCT------------------------------------------ | 18 | 2 |
| | -----------------------------------------------------------------------------------AGATCATCGTGAAAGCTAGT--------------------------------------- | 20 | 1 |
| celegans | --------------ATCAGTGCCATCGTGCCCAACAGTCGGTTTTCACCGTGATCTGAGAGCAAT-CCAAAAATGCTTTTCTGAGATCATCGTGAAAGCTAGTTGTTGGTCTACGGGCTTTTG------------------- | |
| cbriggsae | ------------------------------------GTCGGTTTTCACCTTGATCTGAGAGCAATAACCAGAATGCTTATCTGAGATCATCGTGAAAGCTAGT--------------------------------------- | |
| cjaponica | ------------------------------------GTCGGTTTTCCCATTGATCTGAGAGCTAA---CTGTACGC-TATCTGAGATCATCGTGAAAGCTAGT--------------------------------------- | |
| cbrenneri | ------------------------------------GTCGGTTTTCACCTTGATCTGAGAGCTAT---CTGAATGC-TATCTGAGATCATCGTGAAAGCTAGT--------------------------------------- | |
| ppacificus | ------------------------TCACTCCCGGCATGCGGTTTTCACGTTGATCTGAGAGCTAA--TCGATATG--TTTCTGAGATCATAGTGAAAGCTACTTGCCGAAGTGA---------------------------- | |
| cremanei | TTGACTATTCTAAAACCACTGCCCTCGTGGCCAGCAGTCGGTTTTCACCTTGATCTGAGAGCTAA--ACATAATGCTTATCTGAGATCATCGTGAAAGCTAGTTGCAGGTACACAGGCTCTTTGACATTAATGAATAATCGA | |
| | ******** * ************ * * * * *********** ********** * | |
| | ----- --------------------------------------------------- --------------------------------------------------------- ----- | T07D1.2.2 T07D1.2 T07D1.2 |
| | ----- --------------------------------------------------- --------------------------------------------------------- ----- | T07D1.2.1 T07D1.2 T07D1.2 |
| | ----- --------------------------------------------------- --------------------------------------------------------- ----- | T07D1.2.3 T07D1.2 T07D1.2 |
| celegans | ......(((..((((.(((((((..(((((((((.(((((((.((((((.. .......)))...))).))))))).)))))))))..)))))))..)))))))..... | 1.000 -43.60 |
| cbriggsae | ...(((((((((..((((((.((((((..........)))...))).))))))..)))))))))... | 1.000 -23.70 |
| cjaponica | ...(((((((....((((((.(((((... ......)) ..))).))))))....)))))))... | 1.000 -17.70 |
| cbrenneri | ...(((((((((..((((((.(((((... ......)) ..))).))))))..)))))))))... | 1.000 -23.80 |
| ppacificus | (((((..(((((...(((((((((..((((((.(((((... .......) )).)).))))))..)))))))))...))))).))))) | 1.000 -36.00 |
| cremanei | ((((.(((((..........(((...((((((.((((..(((((((((..((((((.(((((... .......))...))).))))))..)))))))))..)))).))).))).)))..............))))).)))) | 0.918 -43.85 |
| celegans | chromosome:X:2431067:2431174:1 | Opposite_strand|Intronic_coding|T07D1.2.2|T07D1.2 ## T07D1.2|protein_coding|T07D1.2|T07D1.2 [Source:RefSeq_peptide;Acc:NP_508444] ## {SimpF: WRM069cB10 1 fosmid,WRM062aG12 1 fosmid,WRM0618aC04 1 fosmid,WRM0630cF03 1 fosmid,WRM0631bE05 1 fosmid,WRM0636aE07 1 fosmid} ## {MIR: cel-mir-81} |
| cbriggsae | chromosome:chrX:4426639:4426786:-1 | Opposite_strand|Intronic_coding|NM_001087279 ## Same_strand|Intronic_coding|NM_001109816 ## {MIR: cbr-mir-81} |
| cjaponica | chromosome:chrUn:6896845:6896992:1 | intergenic |
| cbrenneri | chromosome:chrUn:978926:979073:-1 | Opposite_strand|Intronic_coding|NM_076043 ## {SimpF: trf} |
| ppacificus | chromosome:chrUn:128697181:128697266:-1 | Same_strand|Intronic_coding|NM_022416 ## Opposite_strand|Intronic_coding|NM_001028815 ## {Repeats: GA-rich 1 89 -1 class=Low_complexity} |
| cremanei | chromosome:chrUn:34151995:34152134:-1 | Opposite_strand|Intronic_coding|NM_076043 |