| seed | ----------------------------------ACCCGUA--------------------------------------------------------------------------------------------- | 2119 | miR-51/52/55 |
| seed | --------------------------------------GUACAUA----------------------------------------------------------------------------------------- | 30 | novel |
| seed | -----------------------------------CCCGUAC-------------------------------------------------------------------------------------------- | 12 | novel |
| seed | ------------------------------------CCGUACA------------------------------------------------------------------------------------------- | 5 | novel |
| seed | -------------------------------------CGUACAU------------------------------------------------------------------------------------------ | 2 | novel |
| | | | CE1 |
| cel-miR-52 | ---------------------------------CACCCGTACATATGTTTCCGTGCT----------------------------------------------------------------------------- | 24 | 1773 |
| | ---------------------------------CACCCGTACATATGTTTCCGTGC------------------------------------------------------------------------------ | 23 | 248 |
| | ---------------------------------CACCCGTACATATGTTTCCGTGCTT---------------------------------------------------------------------------- | 25 | 50 |
| | -------------------------------------CGTACATATGTTTCCGTGCT----------------------------------------------------------------------------- | 20 | 25 |
| | ---------------------------------CACCCGTACATATGTTTCCGTG------------------------------------------------------------------------------- | 22 | 17 |
| | ---------------------------------CACCCGTACATATGTTTCCG--------------------------------------------------------------------------------- | 20 | 17 |
| | ----------------------------------ACCCGTACATATGTTTCCGTGCT----------------------------------------------------------------------------- | 23 | 12 |
| | ---------------------------------CACCCGTACATATGTTTCCGT-------------------------------------------------------------------------------- | 21 | 8 |
| | -----------------------------------CCCGTACATATGTTTCCGTGCT----------------------------------------------------------------------------- | 22 | 5 |
| | -------------------------------------CGTACATATGTTTCCGTGC------------------------------------------------------------------------------ | 19 | 5 |
| | ---------------------------------CACCCGTACATATGTTTCC---------------------------------------------------------------------------------- | 19 | 5 |
| | ------------------------------------CCGTACATATGTTTCCGTGCT----------------------------------------------------------------------------- | 21 | 2 |
| | ---------------------------------CACCCGTACATATGTTTC----------------------------------------------------------------------------------- | 18 | 1 |
| celegans | -----------------TCCAACTCTAACAGTCCACCCGTACATATGTTTCCGTGCTTGACAGCGAAGCTCAATCACGTT-ACAATGAAAGGGTAGCCGGTTATTGAAGTTGGGTCTT---------------- | |
| cbriggsae | ----------------TTCCCGCTCTGACAGTCCACCCGTACATATGTTTCCGTGCTTGACA-TAGAGCTCAATCACGAT-ACAATGAGCGGGTAGCCGGTCATCG-AGTCGGAA------------------- | |
| cjaponica | TATT------TCGACGCTCCTCCAACGACAGACCACCCGTACATATGTTTCCGTGCTTGACTCTACGCCTCAATCACGTTAACAATTTATGGTTCGCCGGTCACG--AGTTGAGCTTTTGCGTTTGATG----- | |
| cbrenneri | TATTGGCTAGTATTCTTTTCGGCTCTGACAGTCCACCCGTACATATGTTTCCGTGCTTGACAAT-GAGTTCAATCACGTC-ACAATTTATGGGTCGCCGGTCATTG-AGTTGAACATTTGAACCAGATCTAATA | |
| cremanei | -----------------ACCCTCTACTACCGTCCACCCGTACATATGTTTCCGTGCTTGACATT-GTGCTCAATCACGTT-ACAATATATGGGTCGCCGGTCTT---AGGCGGT-------------------- | |
| | * * ** * ***************************** ********* ***** ** * ****** ** * | |
| celegans | ((((((((((((.(.(.((((...(((.(((...((((.(((((......).)))).)))).. ))))))...)))).).).))))..).))))))).... | 1.000 -25.70 |
| cbriggsae | .(((.((((((((.....((((((.(((.(((...((((.((((.. ......)))).)))).. )))))).)))))).....))))..) ))).))). | 1.000 -33.90 |
| cjaponica | .... (((((((..((.((((....((((...((..((((((((..((((.((((.........)))).))))..))))...))))...))..))))... .)))))).....))))).)).. | 0.979 -29.10 |
| cbrenneri | ((((((......(((..((((((((((((.....(((((((.((.(((...((((.((((.... ....)))).)))).. ))))).))))))).....))))..) ))))))).....)))......)))))) | 0.838 -31.90 |
| cremanei | (((.((((..((((...(((((((.((.(((...((((.((((.... ....)))).)))).. ))))).)))))))...))))..) ))).))) | 1.000 -28.80 |
| celegans | chromosome:IV:14033976:14034075:1 | intergenic ## {SimpF: WRM0634bF10 1 fosmid,WRM0631dC06 1 fosmid,WRM0614cF04 1 fosmid,WRM0628aF10 1 fosmid} ## {MIR: cel-mir-52} |
| cbriggsae | chromosome:chrIV:5731131:5731226:1 | Same_strand|Intronic_coding|NM_001106790 ## Opposite_strand|Intronic_coding|NM_001128722 ## {MIR: cbr-mir-52} |
| cjaponica | chromosome:chrUn:11282764:11282884:1 | intergenic |
| cbrenneri | chromosome:chrUn:102731927:102732057:1 | intergenic |
| cremanei | chromosome:chrUn:56827927:56828018:-1 | Opposite_strand|Intronic_coding|NM_069625 |