| seed | -------------------------------UUGUACU--------------------------------------------------------------------------------------------------- | 0 | miR-239a |
| | | |
| cel-miR-239b | ------------------------------TTTGTACT----------------------ACACAAAAGTACTG--------------------------------------------------------------- | 22 |
| celegans | GCGAC---------------AGATGCAATTTTTGTACT----------------------ACACAAAAGTACTGGTCATTTAAGTTGAGGCTCAGCACT--TTTGTGGTGTGCAAAAATGGCAAGTTGCTTTTATCT | |
| cbriggsae | ------------------------------TTTGTACT----------------------GCACAAAAGTACTGACTATTT---------CTCAGCGCT--TTTGTCCAGTGCAAG--------------------- | |
| cjaponica | ------------------------------TTTGTACT----------------------ACACATAGGTACTGGTGA----AAACGTGTTTAACCAGTGCCTGGTCTAGTGCAAG--------------------- | |
| cbrenneri | GCTGCCATTCCAAACTGACAAGTTGCAGTTTTTGTACT----------------------TCACAAGAGTACTGGCGGTTC-AGGTCCGGCTCAGAACT--TTTGTGGGGTGCAAGAACAGCAAAACTGTCA----- | |
| ppacificus | ------------------------------ATTGTACTAATTTATTTATTTATTTATTTAATAAAAAAATAAAAATAA---------------ATAAATAAATAATGTCATACAAG--------------------- | |
| cremanei | ------------------------------TTTGTACT----------------------GCACAAAAGCTCTGACTGCTC-TGATATGGCTCAGCACT--TTTGTCT-GTGCAAA--------------------- | |
| | ******* * * * * * * * *** | |
| celegans | ((((( ...(((.((((((((((. .(((((((((.((((((.((......))))).))).))) ))))))..)))))))))).))).)))))........ | 1.000 -37.50 |
| cbriggsae | .((((((( (.(((((((..((((...... .))))..)) ))))).)))))))). | 1.000 -24.20 |
| cjaponica | .((((((( (.((.(((((((((((.. (((....))).))))))))))))).)))))))). | 1.000 -28.40 |
| cbrenneri | ...............(((((..((((.((((((((((. .(((((((((.(((((((... ....)).)).))).))) ))))))..)))))))))).))))...))))) | 0.972 -45.90 |
| ppacificus | .(((((.....((((((((((((((((((.............)))))) )))))))))))).....))))). | 0.999 -15.32 |
| cremanei | .((((((. ..(((((((..((((..(((. ......)))))))..)) ))))).. )))))). | 1.000 -17.90 |
| celegans | chromosome:X:11791226:11791323:-1 | intergenic ## {SimpF: WRM064aB01 -1 fosmid,WRM067bC07 -1 fosmid,WRM0624bH08 -1 fosmid,WRM068cE04 -1 fosmid,WRM0610bH05 -1 fosmid,WRM0632aD05 -1 fosmid,WRM0628bH10 -1 fosmid,WRM0621bA09 -1 fosmid,WRM0624aG10 -1 fosmid} ## {MIR: cel-mir-239b} |
| cbriggsae | chromosome:chrX:15174113:15174250:-1 | Opposite_strand|Intronic_coding|NM_001099298 ## Same_strand|Intronic_coding|NM_077585 ## {MIR: cbr-mir-239b} |
| cjaponica | chromosome:chrUn:61791059:61791196:-1 | intergenic |
| cbrenneri | chromosome:chrUn:34417669:34417775:1 | intergenic |
| ppacificus | chromosome:chrUn:166913035:166913172:1 | Opposite_strand|Intronic_coding|NM_145301 ## {Repeats: (TTTA)n 1 21 1 class=Simple_repeat,(TAAA)n 4 35 1 class=Simple_repeat} |
| cremanei | chromosome:chrUn:26918263:26918400:1 | intergenic |