other hairpins
novel_nonpairedHIGH (27 loci)
block4659 [novel_nonpairedHIGH]
Hairpin parameters
| no | 0.361 | no | no | 0.50/0.50 | 20/20/1.00 | 0.0
| 0.0
| 2
| 0
| 1
| 0
| 14
| 15
| 5arm
| 2
| nd
| 0.35
| 2
| 2 | 1 | na | na |
| seed | ---------------UUCAAUC------------------------------------------------------------------------------ | 2 | novel |
| | | | CE1 |
| | --------------TTTCAATCGTTGGCAGTGGC------------------------------------------------------------------ | 20 | 2 |
| celegans | ttgacaaaatttagTTTCAATCGTTGGCAGTGGCattggctggtggtgttcgagcagcatggcggacaaattgctgttggcggatgtcgggtggcggtca | |
| | **************************************************************************************************** | |
| celegans | .((((...((((.....((.((((..(((((((..((.(((.(((.(((....))).)))))).))....)))))))..)))).))..))))....)))) | 0.440 -26.40 |
block4662 [novel_nonpairedHIGH]
Hairpin parameters
| no | 0.361 | no | no | 0.50/0.50 | 20/20/1.00 | 0.0
| 0.0
| 2
| 0
| 1
| 0
| 14
| 15
| 5arm
| 2
| nd
| 0.35
| 2
| 2 | 1 | na | na |
| seed | ---------------UUCAAUC------------------------------------------------------------------------------ | 2 | novel |
| | | | CE1 |
| | --------------TTTCAATCGTTGGCAGTGGC------------------------------------------------------------------ | 20 | 2 |
| celegans | ttgacaaaatttagTTTCAATCGTTGGCAGTGGCattggctggtggtgttcgagcagcatggcggacaaattgctgttggcggatgtcgggtggcggtca | |
| | **************************************************************************************************** | |
| celegans | .((((...((((.....((.((((..(((((((..((.(((.(((.(((....))).)))))).))....)))))))..)))).))..))))....)))) | 0.440 -26.40 |
block4800 [novel_nonpairedHIGH]
Hairpin parameters
| no | 0.023 | no | no | 0.29/0.29 | 21/21/1.00 | 0.0
| 0.0
| 2
| 0
| 1
| 0
| 20
| 7
| 5arm
| 1
| nd
| 0.33
| 3
| 2 | 1 | na | na |
| seed | ---------------------AAUAUUA------------------------------------------------------------------------ | 2 | novel |
| | | | CE1 |
| | --------------------TAATATTAGTCCAGTCCAATT----------------------------------------------------------- | 21 | 2 |
| celegans | agataaaactttgtttatatTAATATTAGTCCAGTCCAATTcaaaaataaaatcgaattttagagtttgacaactatttaaaaaaaacattcattttgtc | |
| | **************************************************************************************************** | |
| celegans | .(((((((...(((((...((((...((((...(((.(((((.(((((........))))).))))).))).)))).))))...)))))....))))))) | 0.990 -16.00 |
block4896 [novel_nonpairedHIGH]
Hairpin parameters
| no | 0.639 | no | no | 0.29/0.29 | 21/21/1.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 14
| 26
| 3arm
| 1
| nd
| 0.33
| 3
| 1 | 1 | na | na |
| seed | --------------------------------------------------------------------------------------AACAACG--------------------------- | 1 | novel |
| | | | CE1 |
| | -------------------------------------------------------------------------------------TAACAACGGTTTTCAAAATTC-------------- | 21 | 1 |
| celegans | ttgaaaaaacaattttaaaatgttctcacatgtttcaactgtttcacgtagttttttttaagtgcaaagattcagcggaggctggTAACAACGGTTTTCAAAATTCtaactttattcaat | |
| | ************************************************************************************************************************ | |
| | ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | Y40H7A.6 Y40H7A.6 sra-30 |
| celegans | (((((.(((.((((((((((((((....((.(((((..(((..((..(((.((......)).)))...))..)))..))))))).....)))).)))).)))))).....))).))))). | 0.530 -17.20 |
| celegans | chromosome:IV:15193316:15193435:-1 | Same_strand|Intronic_coding|Y40H7A.6|Y40H7A.6 ## Y40H7A.6|protein_coding|sra-30|Serpentine Receptor, class A (alpha) family member (sra-30) [Source:RefSeq_peptide;Acc:NP_502833] ## {SimpF: WRM0634aD03 -1 fosmid,WRM0632aH08 -1 fosmid} |
block4909 [novel_nonpairedHIGH]
Hairpin parameters
| no | 0.801 | no | no | 0.33/0.33 | 21/21/1.00 | 0.0
| 0.0
| 2
| 0
| 1
| 0
| 11
| 14
| 3arm
| 1
| nd
| 0.33
| 2
| 2 | 1 | na | na |
| seed | ---------------------------------------------------------------------AGGGUUG------------------------ | 2 | novel |
| | | | CE1 |
| | --------------------------------------------------------------------TAGGGTTGATGAGTTAAGTTT----------- | 21 | 2 |
| celegans | gtgttttaaattattttttttctgtttcaatttaaaagtatagttgttcgtaatcaaattttattcgtTAGGGTTGATGAGTTAAGTTTtttcaaaacaa | |
| | **************************************************************************************************** | |
| | -------------------------------------------------------------------------------------------------------------- | Y73F8A.5 Y73F8A.5 Y73F8A.5 |
| celegans | .(((((((((..((((...(((....((((((..((.(((...(((........)))....)))...))..)))))).)))..))))..))).)))))). | 0.430 -10.50 |
| celegans | chromosome:IV:15260381:15260480:-1 | Opposite_strand|Intronic_coding|Y73F8A.5|Y73F8A.5 ## Y73F8A.5|protein_coding|Y73F8A.5|Y73F8A.5 [Source:RefSeq_peptide;Acc:NP_502841] ## {SimpF: WRM0633cB03 -1 fosmid,WRM0641cC01 -1 fosmid,WRM0615cG05 -1 fosmid} |
block4965 [novel_nonpairedHIGH]
Hairpin parameters
| no | 0.276 | no | no | 0.30/0.30 | 20/20/1.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 16
| 10
| 3arm
| 1
| nd
| 0.35
| 3
| 1 | 1 | na | na |
| seed | -------------------------------------------------------------UUUGAGG---------------------------- | 1 | novel |
| | | | CE1 |
| | ------------------------------------------------------------TTTTGAGGTTCTTAACATTG---------------- | 20 | 1 |
| celegans | acggaacatttttacatttttgtgaactttataaaactggagattcgttttttcttttgaTTTTGAGGTTCTTAACATTGaattttgaaggttttg | |
| | ************************************************************************************************ | |
| celegans | .((((((.((((...((((.(((((((((((.......(((((.......)))))........))))))))...)))..))))...)))))))))) | 0.410 -15.06 |
block5325 [novel_nonpairedHIGH]
Hairpin parameters
| no | 0.678 | no | no | 0.38/0.38 | 21/21/1.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 8
| 4
| 5arm
| 1
| nd
| 0.43
| 3
| 1 | 1 | na | na |
| seed | ---------UGGAUAU------------------------------------------------------- | 1 | novel |
| | | | CE1 |
| | --------ATGGATATGTCGAAAAGGAGA------------------------------------------ | 21 | 1 |
| celegans | attgggatATGGATATGTCGAAAAGGAGAgcaaataaaatggacttgtgaatcccttgatgcacccctcaa | |
| | *********************************************************************** | |
| celegans | .(((((....((...((((((...(((..((((...........))))...))).))))))..)).))))) | 0.890 -9.80 |
block5819 [novel_nonpairedHIGH]
Hairpin parameters
| no | 0.521 | no | no | 0.54/0.54 | 24/24/1.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 10
| 0
| 3arm
| 1
| nd
| 0.38
| 3
| 1 | 1 | na | na |
| seed | -------------------------------------------UUCAGCC-------------------------- | 1 | novel |
| | | | CE1 |
| | ------------------------------------------GTTCAGCCATTCGTTCTCCGCTAG---------- | 24 | 1 |
| celegans | attctatacaatttaccgttaacttttggtttgccgagttaaGTTCAGCCATTCGTTCTCCGCTAGattgaaggaa | |
| | **************************************************************************** | |
| | -------------------------------------------------------------------------------------- | Y67H2A.2b Y67H2A.2 Y67H2A.2 |
| | -------------------------------------------------------------------------------------- | Y67H2A.2a Y67H2A.2 Y67H2A.2 |
| celegans | .((((...(((((((.((..(((...(((((.((........))..)))))...)))...)).)))))))..)))) | 0.760 -12.10 |
| celegans | chromosome:IV:13290963:13291038:1 | Opposite_strand|Intronic_coding|Y67H2A.2a|Y67H2A.2 ## Opposite_strand|Intronic_non-coding|Y67H2A.2b|Y67H2A.2 ## Y67H2A.2|protein_coding|Y67H2A.2|Y67H2A.2a [Source:RefSeq_peptide;Acc:NP_001041056] ## {SimpF: CEOP4539 -1 Operon} |
block5882 [novel_nonpairedHIGH]
Hairpin parameters
| no | 0.723 | no | no | 0.29/0.29 | 21/21/1.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 9
| 12
| 3arm
| 1
| nd
| 0.33
| 3
| 1 | 1 | na | na |
| seed | -------------------------------------------------------------------GAUGAUA---------------------- | 1 | novel |
| | | | CE1 |
| | ------------------------------------------------------------------TGATGATAGCATTAAAATTGG--------- | 21 | 1 |
| celegans | tgatttaaatattgatttactgttacgcactttctattaaaaatttggttttcgagcacaatttagTGATGATAGCATTAAAATTGGtaaaaatta | |
| | ************************************************************************************************ | |
| | ---------------------------------------------------------------------------------------------------------- | Y37A1B.17a Y37A1B.17 Y37A1B.17 |
| | ---------------------------------------------------------------------------------------------------------- | Y37A1B.17b Y37A1B.17 Y37A1B.17 |
| celegans | .........(((..((((..(((((((((((.............((((((....))).)))...)))).)).)))))...))))..)))....... | 0.930 -11.29 |
| celegans | chromosome:IV:13978477:13978572:1 | Opposite_strand|Intronic_coding|Y37A1B.17a|Y37A1B.17 ## Y37A1B.17|protein_coding|Y37A1B.17|Y37A1B.17a [Source:RefSeq_peptide;Acc:NP_001076722] ## {SimpF: WRM062bH10 1 fosmid,WRM067aD04 1 fosmid,WRM0615cE09 1 fosmid} |
block5942 [novel_nonpairedHIGH]
Hairpin parameters
| no | 0.221 | no | no | 0.43/0.43 | 21/21/1.00 | 0.0
| 0.0
| 1
| 0
| 1
| 0
| 8
| 0
| 5arm
| 1
| nd
| 0.43
| 3
| 1 | 1 | na | na |
| seed | ---------UGGUUGU-------------------------------------------------------- | 1 | novel |
| | | | CE1 |
| | --------TTGGTTGTCAGAGCTATTGCT------------------------------------------- | 21 | 1 |
| celegans | gagggtacTTGGTTGTCAGAGCTATTGCTttttttttgtttttggtggtttttttgggaaatatggattttt | |
| | ************************************************************************ | |
| celegans | ((((((.((...((.((((((..((..((..............))..))..)))))).))....)))))))) | 0.920 -9.34 |