| seed | -------------------------------------------------------------------------------------GAGAUCA------------------------------------------------- | 19547 | miR-80/81/82 |
| seed | --------------------------------------------------------------------------------------AGAUCAU------------------------------------------------ | 182 | novel |
| seed | -----------------------------------------------------------------------------------------UCAUCGU--------------------------------------------- | 145 | novel |
| seed | ----------------------------------------------------------------------------------------AUCAUCG---------------------------------------------- | 7 | miR-392 |
| | | | CE1 |
| cel-miR-82 | ------------------------------------------------------------------------------------TGAGATCATCGTGAAAGCCAGT----------------------------------- | 22 | 16772 |
| | ------------------------------------------------------------------------------------TGAGATCATCGTGAAAGCCAG------------------------------------ | 21 | 1944 |
| | ------------------------------------------------------------------------------------TGAGATCATCGTGAAAGCC-------------------------------------- | 19 | 438 |
| | ------------------------------------------------------------------------------------TGAGATCATCGTGAAAGCCAGTT---------------------------------- | 23 | 315 |
| | -------------------------------------------------------------------------------------GAGATCATCGTGAAAGCCAGT----------------------------------- | 21 | 149 |
| | ----------------------------------------------------------------------------------------ATCATCGTGAAAGCCAGT----------------------------------- | 18 | 139 |
| | ------------------------------------------------------------------------------------TGAGATCATCGTGAAAGC--------------------------------------- | 18 | 53 |
| | -------------------------------------------------------------------------------------GAGATCATCGTGAAAGCCAG------------------------------------ | 20 | 23 |
| | ------------------------------------------------------------------------------------TGAGATCATCGTGAAAGCCA------------------------------------- | 20 | 22 |
| | -------------------------------------------------------------------------------------GAGATCATCGTGAAAGCC-------------------------------------- | 18 | 6 |
| | ----------------------------------------------------------------------------------------ATCATCGTGAAAGCCAGTT---------------------------------- | 19 | 5 |
| | -------------------------------------------------------------------------------------GAGATCATCGTGAAAGCCAGTT---------------------------------- | 22 | 4 |
| | ---------------------------------------------------------------------------------------GATCATCGTGAAAGCCAGT----------------------------------- | 19 | 4 |
| | ---------------------------------------------------------------------------------------GATCATCGTGAAAGCCAG------------------------------------ | 18 | 3 |
| | ------------------------------------------------------------------------------------TGAGATCATCGTGAAAGCCAGTTG--------------------------------- | 24 | 3 |
| | ----------------------------------------------------------------------------------------ATCATCGTGAAAGCCAGTTG--------------------------------- | 20 | 1 |
| celegans | --------------------GAAATAGGTTCTTTTAGCAACCGGTTTTCTCTGTGATCTACAGAAT----GACAGCTAATCGTCTGAGATCATCGTGAAAGCCAGTTGTTTTTATGAACTC-------------------- | |
| cbriggsae | -----TTCGATATTAAAACTATAAAAAGTTCTTCTAGCGACAGGTTTTCGCCGTGATCTGCAGAGTTCCATGAAGAAA-ACATCTGAGATCATCGTGAAAGCCAGTTGCTTAAGAGGACTCATTGTGAAAAACTAGAGAA- | |
| ppacificus | ---------------------------TCACTCCCGGCATGCGGTTTTCACGTTGATCTG-AGAGC---TAATCGATATGTTTCTGAGATCATAGTGAAAGCTACTTGCCGAAGTGA------------------------ | |
| cjaponica | --------------------------TATTCTTCTAGCGACCGGTTTTCTCCGTGATCTGCAGAGC----TTTTGCAT-ACTTCTGAGATCATCGTGAAAGCCAGTTGCTTAAAAGAATAGTTTATC-------------- | |
| cbrenneri | TGGAAGTATTAAAGTGAAATAAAATATGTTCTCCTAGCAACAGGTTCTCACTGTGATCTGCAGAGT---ATAAAGCCT-ACATCTGAGATCATCGTGAAAGCCAGTTGCTT--ACGAACTAAATTCATAAAAAGTAGTCTA | |
| cremanei | --------------------------AGTTCTTCTAGCGACAGGTTTTCCCTGTGATCTGCAGAGT---ACAAAGAAATACATCTGAGATCATCGTGAAAGCCAGTTGTTTCCAAGAACT--------------------- | |
| | ** ** **** ** * ****** *** * *********** ******** * *** * | |
| | +++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | T07D1.2.2 T07D1.2 T07D1.2 |
| | +++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | T07D1.2.1 T07D1.2 T07D1.2 |
| | +++++ ++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | T07D1.2.3 T07D1.2 T07D1.2 |
| celegans | ......(((((....((((((.(((((((.(.(((((((.((((.( ((.......)))))))))))))).).))))))).)))))).....))))). | 1.000 -35.30 |
| cbriggsae | ..............(((((..(((((((..((((((.(((((((((.(((((((.((((.(((......))). ...))))))))))).))))))))).))))))...)))))))..)))))............. | 0.945 -45.70 |
| ppacificus | (((((..(((((...(((((((((..((((((. ((((( ..........))).)).))))))..)))))))))...))))).))))) | 1.000 -36.00 |
| cjaponica | (((((((..((((((.(((((((...(((((((.(((((( ....)).. ...)))))))))))...))))))).))))))...)))))))....... | 1.000 -36.60 |
| cbrenneri | ((((..((((...(((((.........((((....((((((.((((.((((.(((((((.(((((( (.......) )).))))))))))).)))).)))).)))))). ..))))....)))))....)))).)))) | 0.925 -39.02 |
| cremanei | (((((((..((((((.(((((((...(((((((.(((((( (........))).)))))))))))...))))))).))))))...))))))) | 1.000 -34.90 |
| celegans | chromosome:X:2435253:2435349:-1 | Same_strand|Intronic_coding|T07D1.2.1|T07D1.2 ## T07D1.2|protein_coding|T07D1.2|T07D1.2 [Source:RefSeq_peptide;Acc:NP_508444] ## {SimpF: WRM069cB10 -1 fosmid,WRM0630cF03 -1 fosmid,WRM062aG12 -1 fosmid,WRM0618aC04 -1 fosmid,WRM0636aE07 -1 fosmid,WRM0631bE05 -1 fosmid} ## {MIR: cel-mir-82} |
| cbriggsae | chromosome:chrX:4423722:4423855:1 | Same_strand|Intronic_coding|NM_001087279 ## Opposite_strand|Intronic_coding|NM_001109816 ## {MIR: cbr-mir-82} |
| ppacificus | chromosome:chrUn:128697181:128697266:-1 | Same_strand|Intronic_coding|NM_022416 ## Opposite_strand|Intronic_coding|NM_001028815 ## {Repeats: GA-rich 1 89 -1 class=Low_complexity} |
| cjaponica | chromosome:chrUn:6900594:6900689:-1 | intergenic |
| cbrenneri | chromosome:chrUn:976012:976146:1 | intergenic |
| cremanei | chromosome:chrUn:34149150:34149240:1 | intergenic |