| seed | ---------------------------------------------------------------------------------------------GGGCGGA----------------------------------- | 0 | novel |
| | | |
| cel-miR-1832 | ------------------------------------------------------------------------------------------T--GGGCGGAGCGAATCGATGAT---------------------- | 21 |
| celegans | --------------------CCGACCAATCAGCGTTTTC-------------GAACTCCGCCCAATCC----ATCTAATTGGTTGGAAAGT--GGGCGGAGCGAATCGATGATTGGTCGGG-------------- | |
| cremanei | AGATACTGTTCCACAACGTCTCCATCAATCAGATTTCTC-------------GCATTCCGCCCGTTTA-------CAATCGGTTGGGCGGGACGGGCGGAACGAGCT--CCTTTGATATGGAGACCAGCTATCT- | |
| cbriggsae | ----------------------AGCCAAAAATT-------------------AGGCTCCGCCCATTTT--------------TTTTAAAGT--GGGCGGAGCCTATT-----TTAAAGT---------------- | |
| cjaponica | ----------------------GATTGACAGTTGTTTTTGGTGTTTGCGAACAAGCTCCGCCTACTTTTTGATTTTCAATTTTTTAAATGT--GGGCGGAGCTTGTC--CGATTAGATTAAGGTATTGTGTTTTC | |
| ppacificus | ----------------------GAGAGAGTGGCGCTCTC-------------GCACCCCTCGTCAGCC--------AATGAGCTTGATAGG--GGGCGGAGACGCCA--CTGTTAG------------------- | |
| | * ** * * * ******* ** | |
| | ----- ------------------- ---------------- ------------------- ---------------------------- ----- | C01F1.6 C01F1.6 C01F1.6 |
| celegans | (((((((((((.((..((( (..(((((((((.((( (.((....)).))))...) )))))))))))).)).))))))))))). | 1.000 -48.80 |
| cremanei | ((((((((.........((((((((..((((((...((( (..((((((((((((. (((....)))....)))))))))))))))).. ..))))))))))))))))).))))) | 0.954 -45.30 |
| cbriggsae | ......(((.( (((((((((((((((( ....))))) )))))))))))).) ))..... | 1.000 -32.50 |
| cjaponica | .....(((((...(((((((.....((.(((((((((((((((..(((((...........))))).)) ))))))))))))). )).....))))))).)))))...... | 0.995 -37.80 |
| ppacificus | ..((.((((((((((.( ((.(((((.((((((. .....))).)))))) )))))))).))))) )).)).. | 1.000 -39.00 |
| celegans | chromosome:II:4284441:4284522:1 | Opposite_strand|Intronic_coding|C01F1.6|C01F1.6 ## C01F1.6|protein_coding|C01F1.6|C01F1.6 [Source:RefSeq_peptide;Acc:NP_494753] ## {Repeats: CEREP20 49 70 1 class=Unknown} ## {SimpF: C01F1.6 1 Expression_profile,WRM0624aB08 1 fosmid} |
| cremanei | chromosome:chrUn:65023130:65023241:1 | Opposite_strand|Exonic_coding|NM_067756 |
| cbriggsae | chromosome:chrIII:10673025:10673146:1 | Same_strand|Intronic_coding|NM_170975 ## Opposite_strand|Intronic_coding|NM_075402 |
| cjaponica | chromosome:chrUn:110151886:110151994:1 | Same_strand|Intronic_coding|NM_064565 |
| ppacificus | chromosome:chrUn:65000043:65000164:-1 | intergenic |
| seed | ---------------------------------------------------------GGGCGGA--------------------------------------- | 0 | novel |
| | | |
| cel-miR-1832 | --------------------------------------------------------TGGGCGGAGCGAATCGATGAT-------------------------- | 21 |
| celegans | TCTCCCTCCAAAATATGAACTCTCCGACCAATCAGCGCAGTTGAACTCTGCTAAAGTGGGCGGAGCGAATCGATGATTGGTCGAAGTTCAAATTTTGGAAGAA | |
| cbriggsae | -----------------------------CACCACCAGAGGCTCTCACCACAAAAGTGGGCGGAGCCAAGGGATGGCT------------------------- | |
| cbrenneri | -------------------CTATTTTTTCACTTTTCTCAGC---------CGACAGGGGGCGGAGCGAAGTGAAAAATGG----------------------- | |
| cjaponica | -------GCAAGATAACAA-----AAAAAACATACCGAAAGAAGTCTCCACGCCTGTGGGCGGAGCTTATGCGGTATTCCCATCCAACAATCCTCTCGC---- | |
| | * * * * ********* * * | |
| | ----------------------------------------------------------------------------------------------------------------- | Y54G2A.2a Y54G2A.2 Y54G2A.2 |
| | ----------------------------------------------------------------------------------------------------------------- | Y54G2A.2b Y54G2A.2 Y54G2A.2 |
| celegans | (((...((((((((.((((((...((((((((((.((...(((..(((((((......))))))))))..)).)))))))))).)))))).))))))))))). | 1.000 -43.70 |
| cbriggsae | ..(((((...((((((..((((....))))..))))))...)).))).. | 1.000 -22.80 |
| cbrenneri | (((.(((((((((((.(((.(( (.......))).))).)))))))))))))) | 1.000 -20.40 |
| cjaponica | ((.(((...... .......((((((....(((.((((..(((....))))))))))...))))))................))).)) | 0.978 -19.85 |
| seed | -------------------------------------------------------------------------GGGCGGA--------------------------------- | 0 | novel |
| | | |
| cel-miR-1832 | ------------------------------------------------------------------------TGGGCGGAGCGAA--TCGATGAT------------------ | 21 |
| celegans | ----------------------CAGCGATTCGAACTCCG----CCCACTGCACC-TGATTGGTTGA--CAAGTGGGCGGAGCGAA--TCGATGAT------------------ | |
| cremanei | -----------------GTCTCCATCAATCAGATTTCTCGCATTCCGCCCGTTTACAATCGGTTGGGCGGGACGGGCGGAACGAGCTCCTTTGATATGGAGAC---------- | |
| cbriggsae | ----------------GATTTTGAGCAATTTTGAGCCAAAACTTAGGCTCCAT--CCATTTTCAAT--AAAGTGGGCGGAGCCTATTTTGAAGTCAAGTAAACTGAAATTC-- | |
| cbrenneri | GATGCTTCTGAGAGTGGA-----AAATACTGAAATTTCCAGCCCTCACTGC---------AGCCTG--AAAGGGGGCGGAGCCAG--ATGAAGATTTCCAGACTTACAGGCTC | |
| cjaponica | ----TTCCTTCGAGTTGCATCATAAAAACATAAGTCTGCA---TTCACTGCGTGATCGTGCGCAAA--TGAGTGGGCGGAGTATCAGTTTTTGATGATGCAACTTGATTGAA- | |
| ppacificus | ---------GAGACCGTCTCTCCATTCACAATGGTCT------CTCGCTTCTC--TGACCAGCGAG--AGAGCGGGCGGAATGGA-------------GAGACGTTGGTTCTC | |
| | * * * ******* | |
| | +++++ +++++++++++++++++ +++++++++++ +++++++++++ +++++++++++++++++ ++++++++ +++++ | C18D11.4.1 C18D11.4 rsp-8 |
| | +++++ +++++++++++++++++ +++++++++++ +++++++++++ +++++++++++++++++ ++++++++ +++++ | C18D11.4.2 C18D11.4 rsp-8 |
| celegans | ((.(((((((..((((( ((((((.(((( .....)).)). ..))))))))))))))) ))).)).. | 1.000 -36.50 |
| cremanei | ((((((((..((((((...((((..((((((((((((.(((....)))....))))))))))))))))....)))))))))))))) | 1.000 -41.10 |
| cbriggsae | ((.(((.((....(((((..(((((..((((((((.. (((((((.... )))))))..)))))))))))))...)))))....)).))).)) | 0.859 -29.30 |
| cbrenneri | ...((((.((((..(((( ((...(((....((((.((((((..... ...... ...)))))))))).))) .......))))))..)))).)))).. | 0.961 -26.34 |
| cjaponica | .((..(((((((((((((((((((((((..(((((( ((((.(((((......))))).. )))))..))))).)))..))))))).)))))))))))))..)). | 0.988 -41.00 |
| ppacificus | ((((((((((((((((((....((.((( ((((((.... .....)))))) ))).))....))))))) )))))...))).))) | 1.000 -43.40 |
| celegans | chromosome:III:11829129:11829192:1 | Same_strand|Intronic_coding|C18D11.4.1|C18D11.4 ## C18D11.4|protein_coding|rsp-8|SR Protein (splicing factor) family member (rsp-8) [Source:RefSeq_peptide;Acc:NP_499533] ## {Repeats: Ce000171 235 256 1 class=___CEMUDR1_DNA/MuDR,Ce000171 226 250 -1 class=___CEMUDR1_DNA/MuDR,Ce000171 185 206 -1 class=___CEMUDR1_DNA/MuDR,Ce000171 191 215 1 class=___CEMUDR1_DNA/MuDR} ## {SimpF: C18D11.4 1 Expression_profile} ## {MIR: cel-mir-1832} |
| cremanei | chromosome:chrUn:65023147:65023232:1 | Opposite_strand|Exonic_coding|NM_067756 |
| cbriggsae | chromosome:chrIII:10672897:10672987:1 | Same_strand|Intronic_coding|NM_170975 ## Opposite_strand|Intronic_coding|NM_075402 |
| cbrenneri | chromosome:chrUn:155643736:155643830:-1 | intergenic |
| cjaponica | chromosome:chrUn:97024069:97024171:-1 | Same_strand|Intronic_coding|NM_068550 ## Opposite_strand|Intronic_coding|NM_069102 |
| ppacificus | chromosome:chrUn:170143661:170143741:-1 | Opposite_strand|Intronic_coding|NM_000209 |