miR-Intess: additional hairpins

Additional hairpins

block3588 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.881	no	no	0.54/0.54	24/24/1.00	0.0	0.0	1	0	1	0	10	-2	5arm_loop	1	34	0.50	4	1	1	na	na

		reads	miRBase family seed
seed	-----------GCGAUGA------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------CGCGATGATGCGGCCATGACAATT--------------------------------------------	24	1
cbriggsae	ttgtttcttgCGCGATGATGCGGCCATGACAATTataattttttcaggaactcgccgccaagcacccagctgacccaa
	******************************************************************************
	----------------------------------------------------------------------------------------	NM_202770
	----------------------------------------------------------------------------------------	NM_033150
	----------------------------------------------------------------------------------------	NM_080681
	----------------------------------------------------------------------------------------	NM_012929
	----------------------------------------------------------------------------------------	NM_001855
	----------------------------------------------------------------------------------------	NM_007736
	----------------------------------------------------------------------------------------	NM_009928
	----------------------------------------------------------------------------------------	NM_031362
	----------------------------------------------------------------------------------------	NM_001113224
	----------------------------------------------------------------------------------------	NM_031366
	----------------------------------------------------------------------------------------	NM_001081764
	----------------------------------------------------------------------------------------	NM_001002980
	----------------------------------------------------------------------------------------	NM_001046199
	----------------------------------------------------------------------------------------	NM_204426
	----------------------------------------------------------------------------------------	NM_001006951
	----------------------------------------------------------------------------------------	NM_001083388
	----------------------------------------------------------------------------------------	NM_001006951
	----------------------------------------------------------------------------------------	NM_204164
	----------------------------------------------------------------------------------------	NM_031365
	----------------------------------------------------------------------------------------	NM_001844
	----------------------------------------------------------------------------------------	NM_080680
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>	NM_069021
	----------------------------------------------------------------------------------------	NM_000092
	----------------------------------------------------------------------------------------	NM_000091
	----------------------------------------------------------------------------------------	NM_001001135
cbriggsae	.((..((..((....((..(((((..(((.((........)).))).......)))))....))....)).))..)).	0.830 -12.10

cbriggsae

chromosome:chrUn:6407300:6407377:1

Opposite_strand|Intronic_coding|NM_202770|AT4G01985 ## Same_strand|Intronic_coding|NM_069021|D2096.8 ## {Repeats: no}

block1295 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.588	no	no	0.28/0.28	18/18/0.00	0.0	0.0	1	0	1	0	24	-3	3arm_loop	1	nd	0.33	2	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------UUGAUUU----------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------------------------GTTGATTTGTGAATTCTA------------------------	18	1
cbriggsae	agccaaaaaaaccatttttcgtcttacactgcgtagctttcactggtttgtGTTGATTTGTGAATTCTAtaggcgtctttgtttgaagtgctg
	*********************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065151
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001061149
	-------------------------------------------------------------------------------------------------------	NM_001010845
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_212962
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061083
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061083
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_063966
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_004845
	-------------------------------------------------------------------------------------------------------	NM_061817
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061817
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065067
	-------------------------------------------------------------------------------------------------------	NM_064950
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065222
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068002
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067633
	-------------------------------------------------------------------------------------------------------	NM_067597
	-------------------------------------------------------------------------------------------------------	NM_181974
cbriggsae	(((.....((((.......(((((........((((..(((((..(((......)))..)))))..))))))))).....)))).....))).	0.790 -16.90

cbriggsae

chromosome:chrIII:1034862:1034954:-1

Same_strand|Intronic_non-coding|NM_065151|W04B5.3 ## Opposite_strand|Intronic_non-coding|NM_001010845|ACSM2A ## Same_strand|Intronic_coding|NM_061083|clec-114 ## {Repeats: no}

block2757 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.064	no	no	0.40/0.40	20/20/1.00	0.0	0.0	1	0	1	0	2	15	5arm	1	nd	0.45	4	1	1	na	na

		reads	miRBase family seed
seed	---UUCACUU--------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--TTTCACTTGAGTCTTCTTCG--------------------------------------------------------------------	20	1
cbriggsae	atTTTCACTTGAGTCTTCTTCGaaatcaaaattttaatcgaatttttgaaattttggaaaaaaaatctttggaaaatcactcttcgaaaa
	******************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067634
	----------------------------------------------------------------------------------------------------	NM_020180
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_017041
	----------------------------------------------------------------------------------------------------	NM_001025087
	----------------------------------------------------------------------------------------------------	NM_001025088
	----------------------------------------------------------------------------------------------------	NM_001025089
cbriggsae	.(((((....((((....(((.(((((((((((((((........))))))))))))..........))).)))....))))...)))))	0.510 -14.00

cbriggsae

chromosome:chrIV:12477818:12477907:1

Same_strand|Intronic_non-coding|NM_067634|cct-8 ## Opposite_strand|Intronic_non-coding|NM_020180|BRUNOL4 ## {Repeats: no}

block1898 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.100	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	22	-2	5arm_loop	1	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------GGAACUA-------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------TGGAACTAATGGCGAAGACGT------------------------------------------	21	1
cbriggsae	tccaaaaatcgataattggtgaTGGAACTAATGGCGAAGACGTtggttttcaaattttccgattatttctttatcttgttctgga
	*************************************************************************************
	-----------------------------------------------------------------------------------------------	NM_123965
	-----------------------------------------------------------------------------------------------	NM_024349
	-----------------------------------------------------------------------------------------------	NM_019034
	-----------------------------------------------------------------------------------------------	NM_001016369
	-----------------------------------------------------------------------------------------------	NM_001032772
	-----------------------------------------------------------------------------------------------	NM_001040602
	-----------------------------------------------------------------------------------------------	NM_001093711
	-----------------------------------------------------------------------------------------------	NM_001095157
	-----------------------------------------------------------------------------------------------	NM_199692
	-----------------------------------------------------------------------------------------------	NM_001033835
	-----------------------------------------------------------------------------------------------	NM_175092
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065286
	-----------------------------------------------------------------------------------------------	NM_001123190
	-----------------------------------------------------------------------------------------------	NM_001126828
	-----------------------------------------------------------------------------------------------	NM_001010953
	-----------------------------------------------------------------------------------------------	NM_001127285
cbriggsae	((((.((...(((((..((((((((((..(((...((((((....))))))..))))))).))))))...)))))...)).))))	0.950 -18.20

cbriggsae

chromosome:chrIV:606058:606142:-1

Opposite_strand|Intronic_coding|NM_123965|ARAC2 ## Opposite_strand|Intronic_non-coding|NM_024349|Ak1 ## Same_strand|Intronic_non-coding|NM_065286|Y53G8AR.6 ## {Repeats: no}

block4539 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.823	no	no	0.65/0.65	23/23/1.00	0.0	0.0	2	0	1	0	1	1	3arm	1	nd	0.26	2	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------------GGCUGAG----------------	2	novel
		len	cloning frequencies
			AF16
	--------------------------------------GGGCTGAGACTCCGAAACCACGG-	23	2
cbriggsae	ctcgtcgttgaatccgggtccacgaaggctgacacgacGGGCTGAGACTCCGAAACCACGGg
	**************************************************************
	------------------------------------------------------------------------	NM_001108848
	------------------------------------------------------------------------	NM_139146
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_174363
cbriggsae	(((((.(((.....((((((.....((.(((......))).))..))).))).))).)))))	0.840 -16.50

cbriggsae

chromosome:chrX:12378057:12378118:-1

Opposite_strand|Intronic_non-coding|NM_001108848|Elavl1 ## Same_strand|Intronic_non-coding|NM_174363|INHBA ## {Repeats: no}

block2771 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.217	no	no	0.26/0.26	19/19/0.00	0.0	0.0	1	0	1	0	19	15	3arm	1	nd	0.32	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AAUGUUA------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------TAATGTTATTTCATGGTAG-------------------	19	1
cbriggsae	gattttctaactgtgaatgctataaaattactgtttcaaaatgtgtctaacaaatttttaaagagccattttttaaTAATGTTATTTCATGGTAGaaattactgtttcaaaatt
	******************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067634
	----------------------------------------------------------------------------------------------------------------------------	NM_001026518
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047596
	----------------------------------------------------------------------------------------------------------------------------	NM_069066
cbriggsae	((((((..(((.((((.((((((.((((.((((((..((((((..(((.............)))..))))))..))))..)).)))).))))))....)))).)))..))))))	0.860 -17.02

cbriggsae

chromosome:chrIV:12687835:12687948:1

Same_strand|Intronic_non-coding|NM_067634|cct-8 ## Opposite_strand|Intronic_coding|NM_001026518|Y105E8A.29 ## {Repeats: no}

block4892 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.591	no	no	0.47/0.47	19/19/0.00	0.0	0.0	1	0	1	0	7	32	3arm	1	nd	0.37	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------------------GCGUUUG------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------------------------GGCGTTTGTGTGATTTGAC-------	19	1
cbriggsae	tccaagacatctttcgaactcatccgccaattgctccaaaaaagtgcgtctttgtgaagtagtgaagccgtccttgttgacagaacatccatttGGCGTTTGTGTGATTTGACagaggga
	************************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------------	NM_153821
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_125756
	----------------------------------------------------------------------------------------------------------------------------------	NM_204793
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_079593
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_169386
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_176459
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001016575
	----------------------------------------------------------------------------------------------------------------------------------	NM_001085944
cbriggsae	(((......(((.((((((.((..((((((.((.((.....(((..((.(((((........))))).))..))).......)).)).....))))))..)).))...)))).))).)))	0.420 -24.40

cbriggsae

chromosome:chrX:6644083:6644202:1

Opposite_strand|Intronic_non-coding|NM_153821|Prrx1 ## Same_strand|Intronic_coding|NM_125756|HEN3 ## Same_strand|Intronic_non-coding|NM_079593|pros ## {Repeats: no}

block5189 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.273	no	no	0.55/0.55	22/22/1.00	0.0	0.0	1	0	1	0	31	14	5arm	15	nd	0.23	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------UUUCGAG---------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------GTTTCGAGTGTGTGTGCGCCTT-------------------------------------------------------------------	22	1
cbriggsae	ccctagtgagtaaaaataggccagtaaatccGTTTCGAGTGTGTGTGCGCCTTtaacccctttgtggcgatacctcaacgatagggcgcgcttgcacaaagggagagaaaattggcggga
	************************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205032
cbriggsae	(((................((((((...(((.(((...(((((.(((((((((........(((.((.....)).)))....))))))))).)))))))).)))......))))))))).	0.500 -34.89

cbriggsae

chromosome:chrX:17121268:17121387:1

Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## {Repeats: no}

block3022 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.202	no	no	0.65/0.65	26/26/0.00	0.0	0.0	1	0	1	0	24	-4	5arm_loop	1	nd	0.38	5	1	1	na	na

		reads	miRBase family seed
seed	-------------------------UGUCUGG-------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------GTGTCTGGCGGTGGCTGAGTCGAACG-------------------------------------------------------	26	1
cbriggsae	gcggtttctgcgagctggctcgaaGTGTCTGGCGGTGGCTGAGTCGAACGagaaaccgatgcggccattgtgggtggtaggctggtcgctcttggcaaggatggc
	*********************************************************************************************************
cbriggsae	((.(((..(((((((.((((........((.((((((((((.((((..........)))).)))))))))).)).........))))))))...)))..))).))	0.980 -39.33

cbriggsae

chromosome:chrUn:1488237:1488341:-1

{Repeats: no}

block1993 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.241	no	no	0.30/0.30	20/20/1.00	0.0	0.0	1	0	1	0	18	-4	5arm_loop	1	nd	0.40	5	1	1	na	na

		reads	miRBase family seed
seed	-------------------AAUAGAU--------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------TAATAGATAGTTGAACTTGG--------------------------------------------	20	1
cbriggsae	gagataaaagtaaaacaaTAATAGATAGTTGAACTTGGattcaaaaaaaccctataaacgttcgattcatcttgagatctcg
	**********************************************************************************
cbriggsae	(((((.................((((((((((((.........................)))))))).))))....))))).	0.490 -11.01

cbriggsae

chromosome:chrIV:2335848:2335929:-1

{Repeats: no}

block3113 [novel_cloningOK_5varHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.152	no	no	0.22/0.30	18/27/0.60	2.2	2.4	5	0	1	0	7	0	3arm	2	nd	0.18	2	5	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------GUAAUUA------------------------	3	novel
seed	-------------------------------------------------------AUUAUAG---------------------	1	novel
seed	--------------------------------------------------UUGUAAU--------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------------------------TGTAATTATAGGGTTTTTAGTAG---------	23	1
	-------------------------------------------------CTTGTAATTATAGGGTTTTTAGTAGCT-------	27	1
	------------------------------------------------------AATTATAGGGTTTTTAGTAGCT-------	22	1
	---------------------------------------------------TGTAATTATAGGGTTTTT--------------	18	1
	---------------------------------------------------TGTAATTATAGGGTTTTTAGTA----------	22	1
cbriggsae	ttgatgatcttactaatgtagctatgatagtttaattaagaatatataaCTTGTAATTATAGGGTTTTTAGTAGCTttgttag
	***********************************************************************************
cbriggsae	.((((((..(((((((...((((...((((((....((((.........)))).))))))..)))).)))))))..)))))).	0.940 -13.90

cbriggsae

chromosome:chrUn:4221422:4221504:-1

{Repeats: no}

block2294 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.165	no	no	0.40/0.40	20/20/1.00	0.0	0.0	2	0	1	0	6	26	3arm	1	nd	0.15	1	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------------------UCCAAAU------------------	2	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------------------------TTCCAAATTACTCAATGCCG------	20	2
cbriggsae	ttgaaaatcgtcaaatttgaataaattgggagcaaaattttaaaattactgtttcaaactctattgtcagattgtgttaggtgattctgaacaaTTCCAAATTACTCAATGCCGattcaa
	************************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001026518
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067755
	----------------------------------------------------------------------------------------------------------------------------------	NM_001047596
	----------------------------------------------------------------------------------------------------------------------------------	NM_075282
cbriggsae	.(((..((((.((...((((.(((.((((((.......((((.(((((((....((...(((......)))...))...))))))).))))...)))))).))).)))))).))))))).	0.780 -20.80

cbriggsae

chromosome:chrIV:12838098:12838217:-1

Same_strand|Intronic_coding|NM_001026518|Y105E8A.29 ## Same_strand|Intronic_non-coding|NM_067755|xpc-1 ## Opposite_strand|Intronic_non-coding|NM_001047596|tag-349 ## {Repeats: no}

block980 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.046	no	no	0.32/0.32	22/22/1.00	0.0	0.0	1	0	1	0	29	1	5arm	1	nd	0.14	2	1	1	na	na

		reads	miRBase family seed
seed	------------------------------UUUUUGG-------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------ATTTTTGGATGCCAATTCTAAG-----------------------------------------------------------------	22	1
cbriggsae	ttttcaaaaaatgcgtcttctattccttaATTTTTGGATGCCAATTCTAAGctattgttgggtaattgatccagaagtttcggatccttatatgtaggccaattttttcaggaaga
	********************************************************************************************************************
	------------------------------------------------------------------------------------------------------------------------------	NM_121608
	------------------------------------------------------------------------------------------------------------------------------	NM_214509
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001101718
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001103783
	------------------------------------------------------------------------------------------------------------------------------	NM_001106371
	------------------------------------------------------------------------------------------------------------------------------	NM_008234
	------------------------------------------------------------------------------------------------------------------------------	NM_001036812
	------------------------------------------------------------------------------------------------------------------------------	NM_001125761
	------------------------------------------------------------------------------------------------------------------------------	NM_205021
	------------------------------------------------------------------------------------------------------------------------------	NM_001090075
cbriggsae	(((((((((((((.((((..((((((..(((((((((((..(((((((.(((....))).)).))))))))))))))))..))).....)))...)))))).))))))..))))).	0.670 -24.50

cbriggsae

chromosome:chrII:7834111:7834226:1

Opposite_strand|Intronic_coding|NM_121608|AT5G16030 ## Same_strand|Intronic_coding|NM_001101718|LOC100009540 ## {Repeats: no}

block3138 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.013	no	no	0.30/0.30	20/20/1.00	0.0	0.0	2	0	1	0	6	3	3arm	3	nd	0.15	1	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------ACACAAG------------------	2	novel
		len	cloning frequencies
			AF16
	----------------------------------------TACACAAGATTACAACTCTA------	20	2
cbriggsae	ttaaatggggttttagtttagtaaaaatatgtgttttgcaTACACAAGATTACAACTCTAtttggg
	******************************************************************
cbriggsae	((((((((((((.((((((.((.....(((((.....))))).)).)))))).)))))))))))).	0.940 -15.80

cbriggsae

chromosome:chrUn:4432598:4432663:-1

{Repeats: no}

block2674 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.702	no	no	0.33/0.33	18/18/0.00	0.0	0.0	1	0	1	0	0	30	5arm	1	nd	0.28	3	1	1	na	na

		reads	miRBase family seed
seed	-CUUGUUU-----------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	TCTTGTTTTGCTTTGGAT-------------------------------------------------------------------------	18	1
cbriggsae	TCTTGTTTTGCTTTGGATaataagaaaaaaaaactaaccttttcagcactattcttgttgtttctcatatttttctgtcgtagaaaataag
	*******************************************************************************************
	-----------------------------------------------------------------------------------------------------	NM_066961
	-----------------------------------------------------------------------------------------------------	NM_001001344
	-------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_171332
cbriggsae	.((((((((.((.(((......(((((((..............(((((.......))))).........))))))).))).))))))))))	0.470 -10.00

cbriggsae

chromosome:chrIV:8993064:8993154:1

Opposite_strand|Intronic_non-coding|NM_066961|W09D10.4 ## Opposite_strand|Intronic_coding|NM_001001344|ATP2B3 ## {Repeats: no}

block4568 [novel_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.288	no	no	0.50/0.50	22/22/1.00	0.0	0.0	1	0	1	0	1	37	5arm	23	nd	0.27	3	1	1	na	na

		reads	miRBase family seed
seed	--UUGGCGA-------------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-GTTGGCGAGTCTTCCTTCTGTT-----------------------------------------------------------------------------------------------	22	1
cbriggsae	tGTTGGCGAGTCTTCCTTCTGTTacacccagttgaaacattgctccagccgatttctgagccaatttctgaccaaaatggataatctttgaacggggaagcttgggaactacgtcggc
	**********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_003107
	--------------------------------------------------------------------------------------------------------------------------------	NM_177736
	--------------------------------------------------------------------------------------------------------------------------------	NM_133381
	--------------------------------------------------------------------------------------------------------------------------------	NM_001110160
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011438
cbriggsae	.((((((((((..((((...(((...(((.(((.(((.((((.((((.......((.(((.....))).))......)))))))).))).))))))..)))..))))))).)))))))	0.800 -30.52

cbriggsae

chromosome:chrX:13680178:13680295:-1

Same_strand|Intronic_non-coding|NM_003107|SOX4 ## Opposite_strand|Intronic_non-coding|NM_177736|Lrrc61 ## {SimpF: trf}

block3558 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.066	no	no	0.28/0.28	18/18/0.00	0.0	0.0	1	0	1	0	24	4	3arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------AGUAUUC----------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------TAGTATTCTTATAGTCAG------------------------	18	1
cbriggsae	ttcaaaaaaatatttttttttgactggaatttccaaaaatttgcTAGTATTCTTATAGTCAGaaaaacagtttaattttttagaat
	**************************************************************************************
	------------------------------------------------------------------------------------------------	NM_202770
cbriggsae	(((.((((((((((((((((((((((((((...(((....))).....)))))...))))))))))).)))...))))))).))).	0.860 -13.80

cbriggsae

chromosome:chrUn:5484236:5484321:1

Opposite_strand|Intronic_coding|NM_202770|AT4G01985 ## {Repeats: no}

block1540 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.413	no	no	0.48/0.48	25/25/0.00	0.0	0.0	1	0	1	0	22	-1	5arm_loop	2	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------UUUGGCU-------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------GTTTGGCTTAGGAGAGTGAACCACT--------------------------------------------------------	25	1
cbriggsae	tgtcttctgaagatgatgaggcGTTTGGCTTAGGAGAGTGAACCACTacttgtcctgttgtcctgtcctgaagatcagcgactcgatacttatcgaagatggc
	*******************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028998
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028999
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029004
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029003
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029002
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029001
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039389
	-----------------------------------------------------------------------------------------------------------------	NM_135472
	-----------------------------------------------------------------------------------------------------------------	NM_164874
	-----------------------------------------------------------------------------------------------------------------	NM_205951
	-----------------------------------------------------------------------------------------------------------------	NM_205952
	-----------------------------------------------------------------------------------------------------------------	NM_205953
	-----------------------------------------------------------------------------------------------------------------	NM_001092606
	-----------------------------------------------------------------------------------------------------------------	NM_001004296
	-----------------------------------------------------------------------------------------------------------------	NM_064155
	-----------------------------------------------------------------------------------------------------------------	NM_001122952
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075505
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_028763
	-----------------------------------------------------------------------------------------------------------------	NM_065922
	-----------------------------------------------------------------------------------------------------------------	NM_010905
	-----------------------------------------------------------------------------------------------------------------	NM_065923
	-----------------------------------------------------------------------------------------------------------------	NM_068002
	-----------------------------------------------------------------------------------------------------------------	NM_067755
	-----------------------------------------------------------------------------------------------------------------	NM_067378
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001031045
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001102968
cbriggsae	.((((((..(((.((.((((.((.(((((((((((.((.((...((..........))..)))).))))).)).)))))).)))).)))))...))))))...	0.450 -25.80

cbriggsae

chromosome:chrIII:11509675:11509777:-1

Same_strand|Intronic_non-coding|NM_001028998|unc-62 ## Opposite_strand|Intronic_non-coding|NM_135472|nAcRalpha-30D ## Opposite_strand|Intronic_coding|NM_001004296|rdx ## {Repeats: no}

block1412 [novel_lenNOK_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.44/0.44	25/25/0.00	0.0	0.0	1	0	1	0	25	7	5arm	2	nd	0.40	5	1	1	na	na

		reads	miRBase family seed
seed	--------------------------GAGAUAC---------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------TGAGATACAGCGGTCGTTTGATACT----------------------------------------------------------------	25	1
cbriggsae	ttcagattccaggtcttctgagagcTGAGATACAGCGGTCGTTTGATACTcagcgagcctgactcagcttcaaacgagtgtatcttggctctcggttgacctagaaatttgggc
	******************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047975
	----------------------------------------------------------------------------------------------------------------------------	NM_001115091
	----------------------------------------------------------------------------------------------------------------------------	NM_001085641
	----------------------------------------------------------------------------------------------------------------------------	NM_080500
	----------------------------------------------------------------------------------------------------------------------------	NM_080504
	----------------------------------------------------------------------------------------------------------------------------	NM_169728
	----------------------------------------------------------------------------------------------------------------------------	NM_169729
	----------------------------------------------------------------------------------------------------------------------------	NM_169730
	----------------------------------------------------------------------------------------------------------------------------	NM_206497
	----------------------------------------------------------------------------------------------------------------------------	NM_131119
	----------------------------------------------------------------------------------------------------------------------------	NM_171075
	----------------------------------------------------------------------------------------------------------------------------	NM_171076
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065552
cbriggsae	.((((((((.(((((..((((((((..(((((((....((((((((.....((((((.....))).))))))))))).)))))))..))))))))..))))).))).)))))..	1.000 -53.20

cbriggsae

chromosome:chrIII:7036389:7036502:-1

Same_strand|Intronic_coding|NM_001047975|LOC683871 ## Opposite_strand|Intronic_coding|NM_001115091|hoxb7a ## {Repeats: no}

block3491 [novel_lenNOK_multiarm_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.757	no	no	0.27/0.33	18/26/0.25	0.0 0.0	0.0 1.3	1 3	0 0	1 1	0 0	45 14	-24 8	5arm_loop_3arm 3arm	3 3	nd nd	0.46 0.39	4 2	4	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------UAUUGAG----------------------------	3	novel
seed	----------------------------------------------AUAAUUU------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------------TTATTGAGTTCCAGTATG------------------	18	2
	---------------------------------------------AATAATTTGTGCTTTTATTGAGTTCC------------------------	26	1
	-----------------------------------------------------------TTATTGAGTTCCAGTATGAATG--------------	22	1
cbriggsae	tgatatttaaatggcagtcttagcgtgaggacattaaggtagcaaAATAATTTGTGCTTTTATTGAGTTCCAGTATGAATGaagttattggttag
	***********************************************************************************************
cbriggsae	((((.....((((((..((....((((.(((..((((...((((.((....)).))))....))))..)))..))))...)).)))))).)))).	0.530 -14.00

cbriggsae

chromosome:chrUn:4252133:4252227:1

{Repeats: no}

block3470 [novel_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.031	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	12	5	3arm	49	nd	0.40	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------CGUUCGU------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------GCGTTCGTGGTGTAATGGTC------------	20	1
cbriggsae	cggcagccgccgcgatatgtacaccttgttagtttatgttgaacgtggGCGTTCGTGGTGTAATGGTCagcatggatgcc
	********************************************************************************
cbriggsae	.((((.(((..(((((...((((((.((...(((((((.....)))))))...)).))))))...))).)).))).))))	0.990 -29.60

cbriggsae

chromosome:chrUn:4078063:4078142:1

{Repeats: no}

block2004 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.021	no	no	0.35/0.35	23/23/1.00	0.0	0.0	2	0	1	0	23	5	3arm	1	nd	0.26	3	2	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------UACAAGU--------------------------------------	2	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------TTACAAGTTTGATGGAGTTGTTG-----------------------	23	2
cbriggsae	aatattctcagtttcagaacttttttgaaatcgtaaagattgttataggaatagTTACAAGTTTGATGGAGTTGTTGaagattattgaggtgagagtatg
	****************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_060112
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020714
cbriggsae	.(((((((((.(((((((((((..(((((...((((..(((........)))..))))...)))))..))))).))))))..........))))))))).	0.820 -20.50

cbriggsae

chromosome:chrIV:2452274:2452373:-1

Same_strand|Intronic_non-coding|NM_060112|skr-1 ## {Repeats: no}

block2863 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.162	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	34	-2	5arm_loop	1	nd	0.42	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------ACGAUGU------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------AACGATGTTCCCGAAGCCA-------------------------------------------------------------	19	1
cbriggsae	atctgaaaccctcccgaatgtccttcagctgagtAACGATGTTCCCGAAGCCActgctctagggtatttttgtcggttaggtacattcgattcgctatttcctccggtttttga
	******************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075117
	----------------------------------------------------------------------------------------------------------------------------	NM_001027964
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061879
	----------------------------------------------------------------------------------------------------------------------------	NM_001027965
	----------------------------------------------------------------------------------------------------------------------------	NM_001129300
cbriggsae	.((.((((((....((((((((((..((((((.(((.((((..(((..(((....)))...))))))).)))))))))))).)))))))................)))))).))	0.710 -27.05

cbriggsae

chromosome:chrIV_random:144996:145109:-1

Same_strand|Intronic_non-coding|NM_075117|Y59A8B.22 ## Opposite_strand|Intronic_coding|NM_001027964|pme-3 ## {Repeats: no}

block3129 [novel_lenNOK_5varHIGH_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.060	no	no	0.28/0.29	18/21/0.50	1.5	0.0	2	0	1	0	19	-3	3arm	2	nd	0.22	3	2	1	na	na

		reads	miRBase family seed
seed	------------------------------------------AGAAUUG--------------------------------	1	novel
seed	---------------------------------------------AUUGUUG-----------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------AATTGTTGACTGTTAATC-------------------	18	1
	-----------------------------------------AAGAATTGTTGACTGTTAATC-------------------	21	1
cbriggsae	gttttgaggtaactcgtagtttttaagagttagtttaattaAAGAATTGTTGACTGTTAATCaaaaggtatacctcttaat
	*********************************************************************************
cbriggsae	(((..(((((((((........((((.((((((..(((((....))))))))))).))))......))).))))))..)))	0.970 -15.44

cbriggsae

chromosome:chrUn:4430354:4430434:-1

{Repeats: no}

block3420 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.062	no	no	0.42/0.42	26/26/0.00	0.0	0.0	1	0	1	0	15	6	3arm	1	nd	0.27	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------AUUAUUC---------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------GATTATTCGGACTGATCACAAGGCTT---------------	26	1
cbriggsae	gaatcaacggtcacataaacgtcttgcttctttcctgagttattcttcaattgcacttgtagggGATTATTCGGACTGATCACAAGGCTTtgtggagtgatttca
	*********************************************************************************************************
cbriggsae	((((((....((.((((((.((((((..((..(((.((((...(((((...(((....))))))))..)))))))..))...)))))))))))))).))))))..	1.000 -27.50

cbriggsae

chromosome:chrUn:2275502:2275606:1

{Repeats: no}

block2967 [novel_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.003	no	no	0.29/0.29	21/21/1.00	0.0	0.0	1	0	1	0	7	29	5arm	1	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	--------UUUUUAC---------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------TTTTTTACAACCTGATATCTG--------------------------------------------------------------------------------------------	21	1
cbriggsae	gtttcaaTTTTTTACAACCTGATATCTGttggaaaattatatttttcaagtttcattcattaaaaaagtgatactaacctataaaaatccacagtttcaggacgtaaatccttaagagct
	************************************************************************************************************************
	-----------------------------------------------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_069314
cbriggsae	((((......(((((..(((((...(((.((((...(((((..((...(((.(((((.........))))).)))))..)))))...)))))))..)))))..))))).......)))).	0.910 -23.82

cbriggsae

chromosome:chrUn:312102:312221:-1

Opposite_strand|Intronic_coding|NM_069314|acc-1 ## {Repeats: no}

block1478 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.980	no	no	0.54/0.54	26/26/0.00	0.0	0.0	1	0	1	0	24	1	3arm	2	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------UGCCUUG------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------------GTGCCTTGAGCAATGCCTTGGTGTCT------------------------	26	1
cbriggsae	gaaattatgttaccccttgggaccagatctgtgcggctcggaaaacagaatatatccatGTGCCTTGAGCAATGCCTTGGTGTCTcttctgaatacttgaacatcttcc
	*************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001030661
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027534
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027535
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066897
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066606
cbriggsae	(((...(((((.....((.(((..(((((((.((.((((((...(((...........)))...))))))...))..))).))))..))).))......))))).))).	0.510 -17.60

cbriggsae

chromosome:chrIII:8775413:8775521:-1

Same_strand|Intronic_non-coding|NM_001030661|SETD1B ## Same_strand|Intronic_coding|NM_066606|lin-12 ## {Repeats: no}

block841 [novel_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.257	no	no	0.61/0.61	23/23/1.00	0.0	0.0	1	0	1	0	21	-3	3arm_loop	1	nd	0.22	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------UCCAUGC------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------ATCCATGCGTGGCTGGTGGTTGG---------------------	23	1
cbriggsae	agttgttttcgcggcaatgctcccggaacatcaggctatccatgATCCATGCGTGGCTGGTGGTTGGggtgtcgtcatcctccagctc
	****************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	--------------------------------------------------------------------------------------------------	NM_001044671
	--------------------------------------------------------------------------------------------------	NM_177366
	--------------------------------------------------------------------------------------------------	NM_001084509
	--------------------------------------------------------------------------------------------------	NM_061557
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020988
cbriggsae	(((((.....((((((.....(((.((.(((((.(((((.((((...)))).)))))))))).)).))))))))).......))))).	0.980 -28.60

cbriggsae

chromosome:chrII:13783390:13783477:-1

Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_non-coding|NM_001044671|MAF ## Opposite_strand|Intronic_coding|NM_061557|rog-1 ## {Repeats: no}

block2944 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.682	no	no	0.36/0.36	22/22/1.00	0.0	0.0	1	0	1	0	0	16	5arm	5	nd	0.55	4	1	1	na	na

		reads	miRBase family seed
seed	-UUGAAUA--------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	TTTGAATAAGGTGGTAACCTTG------------------------------------------------------	22	1
cbriggsae	TTTGAATAAGGTGGTAACCTTGaggtcactgtcacaaataggttttttaatagttactttgggtctaggtttgaga
	****************************************************************************
cbriggsae	((..(((....(((....((..((((.(((((...(((.....)))...))))).))))..)).))).)))..)).	0.720 -11.80

cbriggsae

chromosome:chrM:9433:9508:-1

{Repeats: no}

sblock72 [novel_lenNOK_multiarm_DicerNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.183	no	no	0.32/0.41	19/22/0.33	0.0 0.0	0.0 0.0	2 1	0 0	1 1	0 0	35 28	2 6	5arm 3arm	2 2	nd nd	0.21 0.23	3 2	3	1	4	10

		reads	miRBase family seed
seed	------------------------------------UAUAUAC---------------------------------------------------------------------------	2	novel
seed	---------------------------------------------------------------------UUUAUGU------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------TTATATACCGTGTAGTTGT----------------------------------------------------------------	19	2
	--------------------------------------------------------------------CTTTATGTGTGAGTAGCTAAGC----------------------------	22	1
cbriggsae	cgttggggtctatggtagttttaatttttagtagtTTATATACCGTGTAGTTGTagccttttttgtaaCTTTATGTGTGAGTAGCTAAGCcttagaattttttgtaagtttctgtgcg
	**********************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------------	NM_001087279
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_166414
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001046332
cbriggsae	(((.((((..(((((.((((((((..((((((..((((((...((((.((((((((......)))))))).))))))))))..))))))..))))))))..)))))..))))...)))	1.000 -21.30

cbriggsae

chromosome:chrX:4787761:4787878:-1

Opposite_strand|Intronic_non-coding|NM_001087279|fbxl5 ## Same_strand|Intronic_non-coding|NM_166414|Act57B ## {Repeats: no}

block1192 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.179	no	no	0.33/0.33	18/18/0.00	0.0	0.0	1	0	1	0	5	32	5arm	1	nd	0.17	2	1	1	na	na

		reads	miRBase family seed
seed	------AUCUCCG---------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----TATCTCCGGTTTTTGAAA-----------------------------------------------------------------------------------------------	18	1
cbriggsae	ggtttTATCTCCGGTTTTTGAAAaaaccgttgttaaagtgcttcctgaacagctctcatctgacatgaattggcggagcgttggcagcacagttttttcgattaactcctgggtatcc
	**********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001012230
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062218
cbriggsae	((...(((((..((((.((((((((((.((((((((...(((((((((.((..((......))..))..)))).))))).))))))))...))))))))))..))))...))))).))	0.930 -29.90

cbriggsae

chromosome:chrII_random:2210258:2210375:-1

Same_strand|Intronic_non-coding|NM_001012230|Xkrx ## Same_strand|Intronic_coding|NM_062218|srx-105 ## {Repeats: no}

block2505 [novel_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.460	no	no	0.50/0.50	22/22/1.00	0.0	0.0	2	0	1	0	4	28	5arm	1	nd	0.27	4	2	1	na	na

		reads	miRBase family seed
seed	-----ACCUUGA------------------------------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	----GACCTTGATCCTGGTTAGATCG----------------------------------------------------------------------------------------------	22	2
cbriggsae	cgagGACCTTGATCCTGGTTAGATCGgctttgaggaccgccggcgacaaaaccgtccacttttcggtttgtggcgtggatctcgtgtccggctctttggtggctaccatggtttttctcg
	************************************************************************************************************************
cbriggsae	((((((....((((.((((.(((((((...(((((.((((..((.((.((((((.........)))))))).)))))).)))))...)))).))).........)))).)))).))))))	0.590 -38.60

cbriggsae

chromosome:chrIV:2998379:2998498:1

{Repeats: no}

block2373 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.490	no	no	0.60/0.60	20/20/1.00	0.0	0.0	1	0	1	0	4	8	3arm	1	nd	0.15	1	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------CGGAAGU----------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------TCGGAAGTGCGGACACTAGG----	20	1
cbriggsae	ttttttactgtttcaattgcatgtctaaattactttaaacaattgggagttgaTCGGAAGTGCGGACACTAGGaaat
	*****************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070458
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061817
	---------------------------------------------------------------------------------------	NM_182297
cbriggsae	(((((((.((((.....(((((.(((.....(((((.........))))).....))).))))))))).))))))).	0.990 -12.70

cbriggsae

chromosome:chrIV:1073397:1073473:1

Same_strand|Intronic_non-coding|NM_070458|Y73F8A.24 ## Opposite_strand|Intronic_non-coding|NM_182297|B0546.4 ## {Repeats: no}

block4287 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.591	no	no	0.59/0.59	22/22/1.00	0.0	0.0	1	0	1	0	10	3	3arm	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------UAGGUGU------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------------GTAGGTGTCGACGGTGTGGACT----------	22	1
cbriggsae	tggtgagaagaatcgactcgtgacgtggcagctgtggctGTAGGTGTCGACGGTGTGGACTccagcgatcg
	***********************************************************************
	---------------------------------------------------------------------------------	NM_001002742
	---------------------------------------------------------------------------------	NM_001094844
	---------------------------------------------------------------------------------	NM_205171
cbriggsae	.(((.....((.((.((((((((((..(((((....)))))...)))).)))).)).)).)).....))).	0.940 -20.10

cbriggsae

chromosome:chrV_random:709930:710000:1

Opposite_strand|Intronic_non-coding|NM_001002742|trappc1 ## Opposite_strand|Intronic_coding|NM_205171|SYT1 ## {Repeats: no}

block1078 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.416	no	no	0.58/0.58	24/24/1.00	0.0	0.0	2	0	1	0	7	-3	5arm_loop	1	nd	0.42	4	2	1	na	na

		reads	miRBase family seed
seed	--------GUCCUGA------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	-------GGTCCTGACGCTGCATTTCCACAG--------------------------------------	24	2
cbriggsae	tcgtactGGTCCTGACGCTGCATTTCCACAGaacgattggacttctcagcgcgatgggatcttcttgag
	*********************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001030387
	-------------------------------------------------------------------------------	NM_062091
cbriggsae	(((....((((((..(((((....((((.........)))).....)))))....))))))....))).	0.970 -17.50

cbriggsae

chromosome:chrII:13134769:13134837:1

Same_strand|Intronic_non-coding|NM_001030387|ARIH1 ## Opposite_strand|Intronic_coding|NM_062091|F02E11.2 ## {Repeats: no}

block2900 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.180	no	no	0.37/0.37	19/19/0.00	0.0	0.0	1	0	1	0	30	5	3arm	1	nd	0.26	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------AUUGCUU-----------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------------TATTGCTTCACCTGTTTTG------------------------------	19	1
cbriggsae	gaaaaaagttttcctgtttcaaaatgtttacaattttggatagtaattatgataatagtTATTGCTTCACCTGTTTTGaatcaatttggttttcattttttttttttg
	************************************************************************************************************
cbriggsae	((((((((..........(((((.((((((.(((..((((((((((((((....)))))))))).))))...))).)))).)).)))))..........)))))))).	0.460 -16.25

cbriggsae

chromosome:chrIV_random:437709:437816:1

{Repeats: no}

block816 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.066	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	20	5	3arm	8	nd	0.30	2	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------UUUGAAU--------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------GTTTGAATGCAGGCCGTTGG--------------------	20	1
cbriggsae	ttggtggagtgtacgcacgaggcgcttcaaactgatgacgttggcggtaGTTTGAATGCAGGCCGTTGGggtgtaaaagatctgaagaa
	*****************************************************************************************
	---------------------------------------------------------------------------------------------------	NM_001030387
cbriggsae	((..((((...(((((.(((((((((((((((((....((....)).))))))))).))..))).)))..))))).....))))..)).	1.000 -26.10

cbriggsae

chromosome:chrII:12764012:12764100:-1

Opposite_strand|Intronic_non-coding|NM_001030387|ARIH1 ## {Repeats: no}

block1460 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.734	no	no	0.48/0.48	21/21/1.00	0.0	0.0	2	0	1	0	8	13	5arm	7	nd	0.29	4	2	1	na	na

		reads	miRBase family seed
seed	---------CUUACGA------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	--------GCTTACGACCATATCACGTTG-----------------------------------------------------------------	21	2
cbriggsae	gatgtgatGCTTACGACCATATCACGTTGaatgcacgccatcccgtccgatctggcaagttaagcaacgttgagtccagttagtacttggatcg
	**********************************************************************************************
	--------------------------------------------------------------------------------------------------------	NM_001092591
	--------------------------------------------------------------------------------------------------------	NM_177186
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001030661
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027534
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027535
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066897
cbriggsae	(((.(((((((.(((((((....((((((...((..((((((......))..))))..))....)))))))).)))..)).)))).))).))).	0.500 -20.70

cbriggsae

chromosome:chrIII:8638808:8638901:-1

Opposite_strand|Intronic_non-coding|NM_001092591|MGC81879 ## Same_strand|Intronic_non-coding|NM_001030661|SETD1B ## {Repeats: no}

block2359 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.085	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	9	5	3arm	1	nd	0.37	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------UACCCUC--------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------TTACCCTCTGACAATTCTG---------	19	1
cbriggsae	tttacggtttcattttttggataaagttacagtatttttaaaaacaatatTTACCCTCTGACAATTCTGaaactgtaa
	******************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_123965
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_024349
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008091
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_019034
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001016369
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001032772
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001040602
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001093711
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001095157
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199692
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001033835
	----------------------------------------------------------------------------------------	NM_001047948
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_175092
	----------------------------------------------------------------------------------------	NM_065286
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001123190
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001126828
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001010953
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001127285
cbriggsae	.(((((((((((.((.(((((....((...((((((.........)))))).))..))))).))...)))))))))))	0.840 -11.50

cbriggsae

chromosome:chrIV:665908:665985:1

Same_strand|Intronic_coding|NM_123965|ARAC2 ## Same_strand|Intronic_non-coding|NM_024349|Ak1 ## Opposite_strand|Intronic_coding|NM_001047948|LOC499584 ## Opposite_strand|Intronic_non-coding|NM_065286|Y53G8AR.6 ## {Repeats: no}

block2033 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.656	no	no	0.26/0.26	19/19/0.00	0.0	0.0	1	0	1	0	20	10	3arm	1	nd	0.47	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------AUAAUAU-------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------TATAATATCAGTCAGTATC--------------------	19	1
cbriggsae	gaatctcaaaaatatttcctgtttctgaacgttatttttatctaaaaatatatttttttatcagTATAATATCAGTCAGTATCagtatagtagttaacaattc
	*******************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068260
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068267
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068270
	-----------------------------------------------------------------------------------------------------------------	NM_068260
	-----------------------------------------------------------------------------------------------------------------	NM_068270
	-----------------------------------------------------------------------------------------------------------------	NM_068267
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068262
	-----------------------------------------------------------------------------------------------------------------	NM_071092
	-----------------------------------------------------------------------------------------------------------------	NM_068279
cbriggsae	((((........((((..(((...((((....((((......((((((......)))))).......))))....))))...)))...)))).......))))	0.900 -9.88

cbriggsae

chromosome:chrIV:2977635:2977737:-1

Same_strand|Intronic_coding|NM_068260|str-175 ## Opposite_strand|Intronic_non-coding|NM_068260|str-175 ## Opposite_strand|Intronic_coding|NM_068270|str-159 ## {Repeats: no}

block2522 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.673	no	no	0.40/0.40	20/20/1.00	0.0	0.0	3	0	1	0	0	27	5arm	1	nd	0.35	3	3	1	na	na

		reads	miRBase family seed
seed	-CGAGUAU---------------------------------------------------------------------------------------------------	3	novel
		len	cloning frequencies
			AF16
	TCGAGTATTGTGTCAAGAAC---------------------------------------------------------------------------------------	20	3
cbriggsae	TCGAGTATTGTGTCAAGAACatgatgtgatgtaatcaaaaacaactaaattgctaattgtgagtgggttacagatgcttttctaaatgttcaaaccgagagaattga
	***********************************************************************************************************
	---------------------------------------------------------------------------------------------------------------------	NM_001105717
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_198022
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_112886
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020066
cbriggsae	((((...(((.((...((((((((.((..(((((((....((((.((......)).)))).....)))))))...))...))...))))))..))))).....))))	0.730 -16.70

cbriggsae

chromosome:chrIV:3318277:3318383:1

Opposite_strand|Intronic_non-coding|NM_001105717|Dpysl2 ## Same_strand|Intronic_non-coding|NM_198022|Tnrc6c ## Same_strand|Intronic_coding|NM_020066|FMN2 ## {Repeats: no}

block3485 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.960	no	no	0.30/0.42	19/23/0.67	0.3	1.7	3	0	1	0	14	11	5arm	3	nd	0.35	2	3	1	na	na

		reads	miRBase family seed
seed	----------------AUCAAAG-----------------------------------------------------------------------------	2	novel
seed	---------------AAUCAAA------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------AATCAAAGGGTTCTAAGGATTAA--------------------------------------------------------------	23	2
	--------------CAATCAAAGGGTTCTAAGG-------------------------------------------------------------------	19	1
cbriggsae	gtatgtttgacttcCAATCAAAGGGTTCTAAGGATTAAtaaataatttttttcaaggttataatttattgtttcaacatagtttatttgctagttacatg
	****************************************************************************************************
cbriggsae	.(((((..((((..(((..(((..(((..((.(((.(((..((((((((....)))))))).))).))).))..)))....)))..)))..)))))))))	0.470 -9.80

cbriggsae

chromosome:chrUn:4250914:4251013:1

{Repeats: no}

block5156 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.161	no	no	0.39/0.39	18/18/0.00	0.0	0.0	1	0	1	0	4	21	5arm	7	nd	0.11	1	1	1	na	na

		reads	miRBase family seed
seed	-----AAUUGAC------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----CAATTGACACTGAAGAAC--------------------------------------------------------------------	18	1
cbriggsae	ggtcCAATTGACACTGAAGAACtgagtgactacgtcttcggcgtccactcgcctcttgtagtactgttctgcgtcacgtcgttagtgcct
	******************************************************************************************
cbriggsae	(((...((((((((((((((((..(((.((((((.....((((......))))...))))))))))))))...))).)).))))))))).	0.960 -25.60

cbriggsae

chromosome:chrX:16193924:16194013:1

{Repeats: no}

block2890 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.706	no	no	0.50/0.50	22/22/1.00	0.0	0.0	1	0	1	0	0	16	5arm	1	nd	0.36	4	1	1	na	na

		reads	miRBase family seed
seed	-UGUGAGA------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	GTGTGAGATCGCCAGGAAATTG----------------------------------------------------------	22	1
cbriggsae	GTGTGAGATCGCCAGGAAATTGaagttaggtgcagcagcttattgatttccacgtaacactcttcttctgaatctagcat
	********************************************************************************
	------------------------------------------------------------------------------------------	NM_075117
	------------------------------------------------------------------------------------------	NM_061879
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067650
cbriggsae	((((.((((...(((((....((.((((.(((...(((....))).....))).))))..))...))))).)))).))))	0.540 -14.40

cbriggsae

chromosome:chrIV_random:167706:167785:1

Opposite_strand|Intronic_non-coding|NM_075117|Y59A8B.22 ## Same_strand|Intronic_non-coding|NM_067650|Y104H12D.3 ## {Repeats: no}

block4699 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.929	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	11	9	3arm	22	nd	0.24	2	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------UUGUUGU------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------------------CTTGTTGTCAGCTGGGACCTT-----------	21	1
cbriggsae	gatgtgagtaaagtcctctcggtcctgtgttctggcttcgaactgtaaacaatcaccttggagaatCTTGTTGTCAGCTGGGACCTTcttggcatatc
	**************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_029869
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020252
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_133906
	------------------------------------------------------------------------------------------------------------	NM_068376
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020297
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_027016
	------------------------------------------------------------------------------------------------------------	NM_079863
	------------------------------------------------------------------------------------------------------------	NM_170535
	------------------------------------------------------------------------------------------------------------	NM_170536
	------------------------------------------------------------------------------------------------------------	NM_078585
	------------------------------------------------------------------------------------------------------------	NM_167331
	------------------------------------------------------------------------------------------------------------	NM_167332
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087595
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_003262
	------------------------------------------------------------------------------------------------------------	NM_078127
	<<<<<<<<<<<<------------------------------------------------------------------------------------------------	NM_078127
	<<<<<<<<<<<<------------------------------------------------------------------------------------------------	NM_078127
cbriggsae	((((((....(((.......(((((((....(((((..(((........(((.....))).......)))..))))).)))))))..)))..))))))	0.470 -19.26

cbriggsae

chromosome:chrX:17980977:17981074:-1

Same_strand|Intronic_non-coding|NM_029869|Zkscan1 ## Opposite_strand|Intronic_coding|NM_068376|ZK354.3 ## Same_strand|Intronic_coding|NM_027016|Sec62 ## Opposite_strand|Intronic_non-coding|NM_079863|dco ## {SimpF: trf}

block5225 [novel_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.322	no	no	0.55/0.55	22/22/1.00	0.0	0.0	1	0	1	0	3	17	5arm	15	nd	0.18	2	1	1	na	na

		reads	miRBase family seed
seed	----UUUCGAG----------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---GTTTCGAGTGTGTGTGCGCCTT--------------------------------------------------------	22	1
cbriggsae	cccGTTTCGAGTGTGTGTGCGCCTTtaaccccttcgtggcgagacctcaacgatagggcgcgcttgcacgaagggagagga
	*********************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007734
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134696
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_203905
	-------------------------------------------------------------------------------------------	NM_001065436
cbriggsae	((..((((..(((((.(((((((((........((((...((....)).)))).))))))))).)))))...))))..)).	0.580 -28.20

cbriggsae

chromosome:chrX:19290866:19290946:1

Same_strand|Intronic_non-coding|NM_007734|Col4a3 ## Same_strand|Intronic_coding|NM_134696|CG2839 ## Opposite_strand|Intronic_non-coding|NM_001065436|Os07g0150700 ## {Repeats: no}

block1551 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.283	no	no	0.60/0.60	20/20/1.00	0.0	0.0	2	0	1	0	20	4	5arm	1	nd	0.30	2	2	1	na	na

		reads	miRBase family seed
seed	---------------------GAGAACU----------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	--------------------GGAGAACTGGGTTTGCGACG----------------------------------------------------	20	2
cbriggsae	agcaaaattagcgaattggtGGAGAACTGGGTTTGCGACGacgacaggttcgacgatgtgttccccagtgtccttgttggcattcgatgcta
	********************************************************************************************
	------------------------------------------------------------------------------------------------------	NM_001122952
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075505
	------------------------------------------------------------------------------------------------------	NM_007496
	------------------------------------------------------------------------------------------------------	NM_010905
	------------------------------------------------------------------------------------------------------	NM_001122953
	------------------------------------------------------------------------------------------------------	NM_064924
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067049
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064451
	------------------------------------------------------------------------------------------------------	NM_001045987
	------------------------------------------------------------------------------------------------------	NM_001044671
	------------------------------------------------------------------------------------------------------	NM_001122952
	------------------------------------------------------------------------------------------------------	NM_012330
	------------------------------------------------------------------------------------------------------	NM_010905
	------------------------------------------------------------------------------------------------------	NM_001107912
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065135
cbriggsae	((((......((.(((....(((..((((((..((((.((.(((.....))).)).))))...)))))).)))..))).))......)))).	0.980 -26.40

cbriggsae

chromosome:chrIII:12094756:12094847:-1

Opposite_strand|Intronic_non-coding|NM_001122952|Nfia ## Same_strand|Intronic_non-coding|NM_075505|psa-1 ## Opposite_strand|Intronic_coding|NM_064924|BE0003N10.3 ## {Repeats: no}

block3083 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.426	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	21	4	5arm	2	nd	0.26	3	1	1	na	na

		reads	miRBase family seed
seed	----------------------UGAGGUU--------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------GTGAGGTTTGCGGTCTTCA---------------------------------------------------------	19	1
cbriggsae	ctcttcctttgcttgcattttGTGAGGTTTGCGGTCTTCAgttagagagataacctagaattgtaaaattatcgatgtgcttctgtaaactgcgagt
	*************************************************************************************************
cbriggsae	(((....(((((..((((.((((((..((((((((((...((((......))))..))).))))))).))).))).))))....)))))....))).	0.890 -19.60

cbriggsae

chromosome:chrUn:3814009:3814105:-1

{Repeats: no}

block2682 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.520	no	no	0.45/0.45	20/20/1.00	0.0	0.0	1	0	1	0	15	7	3arm	1	nd	0.20	2	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------------------UCGUGAA---------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------------------------------TTCGTGAACAGTGTTGGAAC---------------	20	1
cbriggsae	ttgtattggaaactgactttttgataaaatgctgtttcaaaaatctacaataacagataataagataaaatgtccgaTTCGTGAACAGTGTTGGAACattttctggtgtaat
	****************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------	NM_001090075
	--------------------------------------------------------------------------------------------------------------------------	NM_001082682
	--------------------------------------------------------------------------------------------------------------------------	NM_001001344
cbriggsae	((((((..((((.((...(((..((.....((((.((((..((((.(((.....................)))..))))..))))))))))..))))).))))..)))))).	0.510 -17.10

cbriggsae

chromosome:chrIV:9159636:9159747:1

Opposite_strand|Intronic_coding|NM_001090075|MGC69046 ## Opposite_strand|Intronic_non-coding|NM_001082682|4F2LC-5 ## {Repeats: no}

block2656 [novel_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.026	no	no	0.38/0.38	21/21/1.00	0.0	0.0	4	0	1	0	7	-2	3arm_loop	1	nd	0.29	2	4	1	na	na

		reads	miRBase family seed
seed	---------------------------------UUCUUAU--------------------	4	novel
		len	cloning frequencies
			AF16
	--------------------------------TTTCTTATGACTTCTCAGTGG-------	21	4
cbriggsae	agtttttcccagtgggattctgagatattcagTTTCTTATGACTTCTCAGTGGtaatgac
	************************************************************
	----------------------------------------------------------------------	NM_066961
cbriggsae	.(((.((.(((.(((((.(((((((.........))))).))..))))).))).)).)))	0.980 -15.10

cbriggsae

chromosome:chrIV:8486168:8486227:1

Opposite_strand|Intronic_non-coding|NM_066961|W09D10.4 ## {Repeats: no}

block4116 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.137	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	32	-3	5arm_loop	1	nd	0.43	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------ACAGCAU----------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------AACAGCATGGGTTTCTGGACG---------------------------------------------	21	1
cbriggsae	attgcgaagaggacgcctggaggacccttaacAACAGCATGGGTTTCTGGACGagctatagccagtgcttcctccggtgttaagaacacttttgtgat
	**************************************************************************************************
	------------------------------------------------------------------------------------------------------------	NM_017182
	------------------------------------------------------------------------------------------------------------	NM_011821
	------------------------------------------------------------------------------------------------------------	NM_134696
	------------------------------------------------------------------------------------------------------------	NM_001040230
	------------------------------------------------------------------------------------------------------------	NM_134696
	------------------------------------------------------------------------------------------------------------	NM_134696
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001041377
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001042144
	------------------------------------------------------------------------------------------------------------	NM_072974
	------------------------------------------------------------------------------------------------------------	NM_001079844
	------------------------------------------------------------------------------------------------------------	NM_182305
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<------------------------------------------<<<<<<<<<<<<<<<<<	NM_073060
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_180608
cbriggsae	((..(((((..((((((.((((((...........(((((.((((..(((.....))).)))).)))))))))))))))))........)))))..))	0.770 -29.60

cbriggsae

chromosome:chrV:11085025:11085122:1

Opposite_strand|Intronic_non-coding|NM_017182|H2afy ## Opposite_strand|Intronic_coding|NM_134696|CG2839 ## Same_strand|Intronic_coding|NM_001041377|ECU05_1680 ## Opposite_strand|Boundary_coding|NM_073060|C50F4.16 ## Same_strand|Intronic_non-coding|NM_180608|AT1G07820 ## {Repeats: no}

block781 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.404	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	24	9	5arm	9	nd	0.33	2	1	1	na	na

		reads	miRBase family seed
seed	-------------------------CAGAAGA-----------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------TCAGAAGAGATTGTGTGATGG----------------------------------------------------------------	21	1
cbriggsae	ttagtatgcatacttcctagagacTCAGAAGAGATTGTGTGATGGaaaccctcgagataaccgcgggtacgtcccgggaattatctgagctttgaacggcctgaactag
	*************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064152
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027224
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001007098
cbriggsae	.((((...((..((...(((((.((((((.((..((.((.((((...((((.((.......)).)))).)))).)).)).)).)))))))))))...))..)).)))).	0.800 -28.10

cbriggsae

chromosome:chrII:11395383:11395491:-1

Same_strand|Intronic_non-coding|NM_064152|ash-2 ## Same_strand|Intronic_coding|NM_001027224|sre-34 ## {Repeats: no}

block3362 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.740	no	no	0.45/0.45	20/20/1.00	0.0	0.0	1	0	1	0	14	12	3arm	1	nd	0.25	2	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------UUUUUGA--------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------GTTTTTGATCTGCAGTCAGG--------------	20	1
cbriggsae	gcaactggatccgtaacttcctctacattcaaacgacggaatatgtatttggactccttcataaccaGTTTTTGATCTGCAGTCAGGttacgtcgtcgtgc
	*****************************************************************************************************
cbriggsae	(((....(((.((((((((...((.((.(((((.(((((..((((.....((...))..)))).)).))))))))..)).))..))))))))..))).)))	0.620 -18.10

cbriggsae

chromosome:chrUn:505080:505180:1

{Repeats: no}

block1745 [novel_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.033	no	no	0.29/0.29	21/21/1.00	0.0	0.0	1	0	1	0	19	15	3arm	12	nd	0.43	5	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AUAUGAU--------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------TATATGATTTTTGGAACCTAG-------------------	21	1
cbriggsae	tagctaagatcaaagtgtagtatctgttcttatcgtattaacctacggtatacactcgaatgagtgtaattaaggtTATATGATTTTTGGAACCTAGgaaagactcggggcttgct
	********************************************************************************************************************
	------------------------------------------------------------------------------------------------------------------------------	NM_001012682
	------------------------------------------------------------------------------------------------------------------------------	NM_001086665
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001092591
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020453
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_116317
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011448
	------------------------------------------------------------------------------------------------------------------------------	NM_111620
	------------------------------------------------------------------------------------------------------------------------------	NM_001006108
	------------------------------------------------------------------------------------------------------------------------------	NM_001091707
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_113459
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067241
cbriggsae	.(((.(((.((..(((.........(((((.((((((.((((((..(((.(((((((....)))))))))).))))))))))))....))))).........)))..)).))))))	0.900 -28.87

cbriggsae

chromosome:chrIII:8266668:8266783:1

Opposite_strand|Intronic_coding|NM_001012682|RPLP0 ## Same_strand|Intronic_non-coding|NM_001092591|MGC81879 ## Same_strand|Intronic_coding|NM_116317|ECA2 ## {Repeats: no}

block567 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.200	no	no	0.45/0.45	22/22/1.00	0.0	0.0	1	0	1	0	10	11	3arm	5	nd	0.41	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------AAUAUCG------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------GAATATCGAAACAACTGCCTCG----------	22	1
cbriggsae	caggtaatggtgttgaggggctgcgaattgccggacttcagggcgccgtcccccgaagtccGAATATCGAAACAACTGCCTCGatgggcctgg
	*********************************************************************************************
	-------------------------------------------------------------------------------------------------------	NM_011074
	-------------------------------------------------------------------------------------------------------	NM_001027762
	-------------------------------------------------------------------------------------------------------	NM_001129008
	-------------------------------------------------------------------------------------------------------	NM_001012534
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075505
cbriggsae	(((((.....((((((((((.(((((.....((((((((.(((.......))).))))))))....)))...)).)).)))))))).))))).	0.810 -34.10

cbriggsae

chromosome:chrI_random:3101570:3101662:1

Opposite_strand|Intronic_non-coding|NM_011074|Pftk1 ## Same_strand|Intronic_non-coding|NM_075505|psa-1 ## {Repeats: no}

block1320 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.272	no	no	0.54/0.54	26/26/0.00	0.0	0.0	1	0	1	0	14	8	5arm	1	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	---------------GUUGAGA---------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------GGTTGAGAACAGTGATGCTGAGCTGG---------------------------------------------------------------	26	1
cbriggsae	cacaagtccagaatGGTTGAGAACAGTGATGCTGAGCTGGatgggatttgctgattccgaaatacagacttccaaaatgttctgaagcagtccagagtggtgg
	*******************************************************************************************************
	-----------------------------------------------------------------------------------------------------------------	NM_001011629
	-----------------------------------------------------------------------------------------------------------------	NM_172925
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065286
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001093260
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009573
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_130279
cbriggsae	(((...((..((.((.((.((((((....((..((((((..(((((((....))))))).....))).))).))...)))))).)).)).))..))...))).	0.940 -25.20

cbriggsae

chromosome:chrIII:2266149:2266251:-1

Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_non-coding|NM_065286|Y53G8AR.6 ## {Repeats: no}

block3402 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.413	no	no	0.48/0.48	23/23/1.00	0.0	0.0	3	0	1	0	43	-1	5arm_loop	2	nd	0.43	3	3	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------UUUUUCG-------------------------------------------------------------------	3	novel
		len	cloning frequencies
			AF16
	-------------------------------------------GTTTTTCGATGGCTTCCGAATCC----------------------------------------------------	23	3
cbriggsae	ggacttctttagatgaaatcgagcattcagaatccttctccacGTTTTTCGATGGCTTCCGAATCCttttagatgacgtggctgatgacgtggatggttcagaatcttctataagttt
	**********************************************************************************************************************
cbriggsae	.(((((...((((........((.((((.(((.((...((((((((..((...((((..((.(((......)))..)).)))))).)))))))).))))).)))))))))).))))).	0.530 -26.20

cbriggsae

chromosome:chrUn:1730148:1730265:1

{Repeats: no}

block1520 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.772	no	no	0.45/0.45	22/22/1.00	0.0	0.0	1	0	1	0	3	11	5arm	8	nd	0.36	4	1	1	na	na

		reads	miRBase family seed
seed	----CCAGCUA----------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---TCCAGCTAGTGTGTGGTAGAAT--------------------------------------------------	22	1
cbriggsae	aatTCCAGCTAGTGTGTGGTAGAATgctttactcgtctcgatgataattccgtatatctcaaacttgggtaatta
	***************************************************************************
	-------------------------------------------------------------------------------------	NM_001026513
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000209
	-------------------------------------------------------------------------------------	NM_170975
	-------------------------------------------------------------------------------------	NM_001027762
	-------------------------------------------------------------------------------------	NM_007723
	-------------------------------------------------------------------------------------	NM_001011571
	-------------------------------------------------------------------------------------	NM_001056446
	-------------------------------------------------------------------------------------	NM_001027705
	-------------------------------------------------------------------------------------	NM_001029059
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075282
	-------------------------------------------------------------------------------------	NM_013665
	-------------------------------------------------------------------------------------	NM_075505
	-------------------------------------------------------------------------------------	NM_010466
	-------------------------------------------------------------------------------------	NM_068079
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075402
	-------------------------------------------------------------------------------------	NM_065139
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075413
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065455
cbriggsae	((((((....(((.((.((((..(((..(((.((((....)))))))...))).)))).)).)))..)).)))).	0.850 -10.60

cbriggsae

chromosome:chrIII:10509106:10509180:-1

Opposite_strand|Intronic_non-coding|NM_001026513|Y105E8A.24 ## Same_strand|Intronic_non-coding|NM_000209|PDX1 ## Opposite_strand|Intronic_coding|NM_007723|Cnga1 ## {Repeats: no}

block3603 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.554	no	no	0.60/0.60	20/20/1.00	0.0	0.0	1	0	1	0	11	24	5arm	3	nd	0.30	4	1	1	na	na

		reads	miRBase family seed
seed	------------UGUCGCG---------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------TTGTCGCGGTACTGGAAGCC---------------------------------------------------------------------------------------	20	1
cbriggsae	tcaaaaggacaTTGTCGCGGTACTGGAAGCCatcaaagtaggatatcactcggggaaagcactttgagcactgatgagaaagatggtcctctccgtttggacaccggtcaagcatgaa
	**********************************************************************************************************************
cbriggsae	(((....(((..((((((((....((..((((((.........((((((((((((......)))))))...))))).....))))))))...))))...))))...))).....))).	0.650 -28.34

cbriggsae

chromosome:chrUn:6807740:6807857:1

{Repeats: no}

block4208 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.491	no	no	0.59/0.59	22/22/1.00	0.0	0.0	1	0	1	0	11	22	5arm	4	nd	0.32	4	1	1	na	na

		reads	miRBase family seed
seed	------------GCUAUGA-------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------GGCTATGAAGATGCGCTCGAGG-----------------------------------------------------------------------------------	22	1
cbriggsae	ggaagaataatGGCTATGAAGATGCGCTCGAGGcgtgggacttttttcgagaattcaaaacaatttttgtgtatggaggatgggccaatggcgtgcgcttttcacaaagtttatcc
	********************************************************************************************************************
	------------------------------------------------------------------------------------------------------------------------------	NM_065190
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028317
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001077602
	------------------------------------------------------------------------------------------------------------------------------	NM_062164
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039440
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_032538
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067755
	------------------------------------------------------------------------------------------------------------------------------	NM_067634
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_146019
cbriggsae	(((.((((..((....((((((.((((.((.(((.((...((((...((((((((......)))))))).....))))..)).))).....)).))))))))))))..)))).)))	0.980 -27.50

cbriggsae

chromosome:chrV:13982909:13983024:1

Opposite_strand|Intronic_non-coding|NM_065190|ppfr-3 ## Same_strand|Intronic_coding|NM_001028317|Y54G2A.11 ## Opposite_strand|Intronic_coding|NM_062164|srz-5 ## {Repeats: no}

block1187 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.382	no	no	0.37/0.37	19/19/0.00	0.0	0.0	1	0	1	0	31	4	3arm	1	nd	0.37	3	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------UUGAAUU------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------------------------------GTTGAATTGAACTCATGTC-------------------------------	19	1
cbriggsae	aagacgtgtcggactgcttagaattcgggctgagacaaaattcttgggattctccttGTTGAATTGAACTCATGTCagagatctggaaaaagaaagttggggtcttg
	***********************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_103505
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001012230
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001123960
cbriggsae	(((((...((.((((..(((((.(((.(((((((....(((((..(((.....)))....)))))...)))).))).))).)))))........)))).))))))).	0.870 -24.80

cbriggsae

chromosome:chrII_random:2073273:2073379:-1

Same_strand|Intronic_coding|NM_103505|AT1G43770 ## Same_strand|Intronic_non-coding|NM_001012230|Xkrx ## {Repeats: no}

sblock16 [novel_multiarm_DicerNOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.491	no	no	0.59/0.60	20/22/1.00	0.0 0.0	0.0 0.0	1 1	0 0	1 1	0 0	11 14	22 21	5arm 3arm	4 4	nd nd	0.32 0.30	4 5	2	1	-2	-7

		reads	miRBase family seed
seed	------------GCUAUGA-------------------------------------------------------------------------------------------------	1	novel
seed	-----------------------------------------------------------------------------------GCCAAUG--------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------GGCTATGAAGATGCGCTCGAGG-----------------------------------------------------------------------------------	22	1
	----------------------------------------------------------------------------------GGCCAATGGCGTGCGCTTTT--------------	20	1
cbriggsae	ggaagaataatGGCTATGAAGATGCGCTCGAGGcgtgggacttttttcgagaattcaaaacaatttttgtgtatggaggatgGGCCAATGGCGTGCGCTTTTcacaaagtttatcc
	********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047975
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047939
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047939
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_127141
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003414
cbriggsae	(((.((((..((....((((((.((((.((.(((.((...((((...((((((((......)))))))).....))))..)).))).....)).))))))))))))..)))).)))	0.980 -27.50

cbriggsae

chromosome:chrII:8222413:8222528:-1

Same_strand|Intronic_coding|NM_001047975|LOC683871 ## Same_strand|Intronic_non-coding|NM_127141|SQN ## {Repeats: no}

block863 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.318	no	no	0.39/0.39	18/18/0.00	0.0	0.0	1	0	1	0	2	21	5arm	7	nd	0.17	1	1	1	na	na

		reads	miRBase family seed
seed	---AAUUGAC---------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--CAATTGACACTGAAGAAC-----------------------------------------------------------------------	18	1
cbriggsae	tcCAATTGACACTGAAGAACtgagtgactacgtcttcggcgtccactcgcctcttgtagtactgttctgcgtcacgtcttatagctttggg
	*******************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_030641
	-----------------------------------------------------------------------------------------------------	NM_075282
	-----------------------------------------------------------------------------------------------------	NM_062337
	-----------------------------------------------------------------------------------------------------	NM_011780
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008746
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001044559
	-----------------------------------------------------------------------------------------------------	NM_060557
	-----------------------------------------------------------------------------------------------------	NM_008026
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075282
	-----------------------------------------------------------------------------------------------------	NM_067080
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071121
cbriggsae	.((((.(((.((((((((((..(((.((((((.....((((......))))...))))))))))))))...))).)).))).....)))).	0.500 -22.30

cbriggsae

chromosome:chrII:1529359:1529449:1

Same_strand|Intronic_non-coding|NM_030641|APOL6 ## Opposite_strand|Intronic_non-coding|NM_075282|wrs-1 ## Opposite_strand|Intronic_coding|NM_067080|Y66D12A.21 ## {Repeats: no}

block839 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.555	no	no	0.52/0.52	23/23/1.00	0.0	0.0	1	0	1	0	24	2	3arm	1	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------CGGAGUC---------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------GCGGAGTCTTTTCCATGGTTGCA------------------------	23	1
cbriggsae	ttgggagtactgtagttggcactgtcgatgtttcagggagcactgtagaagtttGCGGAGTCTTTTCCATGGTTGCActgaaaaaaactaaaacttctgac
	*****************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122953
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	---------------------------------------------------------------------------------------------------------------	NM_001044671
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122952
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010905
	---------------------------------------------------------------------------------------------------------------	NM_177366
	---------------------------------------------------------------------------------------------------------------	NM_008091
	---------------------------------------------------------------------------------------------------------------	NM_001084509
	---------------------------------------------------------------------------------------------------------------	NM_061557
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020988
cbriggsae	((((((((....(((((.......(((.(((.(((((((((.((((((....)))))).))...)))).)))..))).)))....)))))..)))))))).	0.550 -22.30

cbriggsae

chromosome:chrII:13687271:13687371:-1

Same_strand|Intronic_non-coding|NM_001122953|Nfia ## Opposite_strand|Intronic_non-coding|NM_001044671|MAF ## Opposite_strand|Intronic_coding|NM_061557|rog-1 ## {Repeats: no}

block1261 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.135	no	no	0.40/0.40	20/20/1.00	0.0	0.0	3	0	1	0	13	18	3arm	1	nd	0.25	2	3	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------------GGAAUAG-------------------------	3	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------------------------TGGAATAGCTAGTTGTTGTC-------------	20	3
cbriggsae	tcaggagttttggaaatttttatctgtttcagaaaatatttttaagagattttatttatcaaaaatagtatTGGAATAGCTAGTTGTTGTCaaaagttgaatga
	********************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001102902
	------------------------------------------------------------------------------------------------------------------	NM_001077612
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065190
	------------------------------------------------------------------------------------------------------------------	NM_001129219
cbriggsae	(((.((.(((((..(((..(((.(((((((((....(((((((...((((...))))...)))))))...))))))))).)))..)))..))))).))...)))	0.980 -18.10

cbriggsae

chromosome:chrIII:189094:189197:-1

Same_strand|Intronic_non-coding|NM_001102902|LOC100124966 ## Opposite_strand|Intronic_coding|NM_001077612|zgc:153009 ## Opposite_strand|Intronic_non-coding|NM_001129219|nhr-121 ## {Repeats: no}

block1839 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.034	no	no	0.57/0.57	28/28/0.00	0.0	0.0	1	0	1	0	3	12	3arm	1	nd	0.25	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------CGCAGAU-----------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------GCGCAGATGGCGCTGTGGTTAGCGTTTT---	28	1
cbriggsae	tactaaaattttgaaaaacgttcccatcctctcccccgcgcgattggctactacctcgcactcctagtccccagttGCGCAGATGGCGCTGTGGTTAGCGTTTTagt
	***********************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_013720
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001107146
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001054815
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001013538
	---------------------------------------------------------------------------------------------------------------------	NM_070558
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_028128
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075459
cbriggsae	.((((((((.((((...(((...(((((.........((((((((((..((((...........))))..)))))))))).)))))...)))..)))).))))))))	0.900 -30.30

cbriggsae

chromosome:chrIII:13022240:13022346:1

Same_strand|Intronic_non-coding|NM_013720|Mga ## Same_strand|Intronic_coding|NM_001107146|Rfc5 ## Opposite_strand|Intronic_non-coding|NM_070558|rho-1 ## {Repeats: no}

block4780 [novel_cloningHIGH_5varHIGH_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.331	no	no	0.38/0.45	19/27/0.82	1.3	0.2	19	0	1	0	5	5	5arm	4	nd	0.36	4	33	1	na	na

		reads	miRBase family seed
seed	----------CUUCAGA------------------------------------------------------------------	7	novel
seed	--------ACCUUCA--------------------------------------------------------------------	6	novel
seed	---------CCUUCAG-------------------------------------------------------------------	6	novel
seed	-----------UUCAGAC-----------------------------------------------------------------	5	novel
seed	-------UACCUUC---------------------------------------------------------------------	4	novel
seed	------AUACCUU----------------------------------------------------------------------	3	novel
seed	----CGAUACC------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	---------CCTTCAGACCACTTGTCATTT-----------------------------------------------------	21	6
	--------ACCTTCAGACCACTTGTCATTT-----------------------------------------------------	22	4
	----------CTTCAGACCACTTGTCATTT-----------------------------------------------------	20	3
	-----GATACCTTCAGACCACTTGTCATTTT----------------------------------------------------	26	3
	-------TACCTTCAGACCACTTGTCATTT-----------------------------------------------------	23	3
	------ATACCTTCAGACCACTTGTCATTT-----------------------------------------------------	24	2
	---TCGATACCTTCAGACCACTTGTCATTT-----------------------------------------------------	27	2
	-------TACCTTCAGACCACTTGTCATT------------------------------------------------------	22	2
	------ATACCTTCAGACCACTTGTCATT------------------------------------------------------	23	2
	----------CTTCAGACCACTTGTCATTTT----------------------------------------------------	21	1
	----------CTTCAGACCACTTGTCATT------------------------------------------------------	19	1
	--------ACCTTCAGACCACTTGTCATT------------------------------------------------------	21	1
	--------ACCTTCAGACCACTTGTCATTTT----------------------------------------------------	23	1
	-------TACCTTCAGACCACTTGTCATTTT----------------------------------------------------	24	1
	---------CCTTCAGACCACTTGTCATT------------------------------------------------------	20	1
cbriggsae	tcttcGATACCTTCAGACCACTTGTCATTTTttaaatgtttttttggattttgaacaattggcaaaatcaaggactaaaagaa
	***********************************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<...............................................................	NM_065481
cbriggsae	((((.....((((....(((.((((((...((((((......))))))...))).))).))).......)))).....)))).	0.920 -11.90

cbriggsae

chromosome:chrX:20313646:20313728:-1

Opposite_strand|Boundary_non-coding|NM_065481|B0284.1 ## {Repeats: no}

block2955 [novel_lenNOK_cloningOK_5varHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.273	no	no	0.38/0.42	19/26/0.20	3.0 0.0	1.5 0.0	2 3	0 0	1 1	0 0	12 8	1 15	3arm 3arm	2 2	nd nd	0.22 0.37	2 4	5	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------GGCUGAG-------------------	3	novel
seed	--------------------------------------------------------UCUUUGG---------------------------	1	novel
seed	--------------------------------------------------AAACUAU---------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------------------------------------AGGCTGAGTAGTAATTGAG--------	19	3
	-------------------------------------------------TAAACTATCTTTGGAGGCTGAGTAGT---------------	26	1
	-------------------------------------------------------ATCTTTGGAGGCTGAGTAGTAAT------------	23	1
cbriggsae	gagcaggagtaaagttgtatttaaactgaaaagatattggcagacattctaaactatctttggAGGCTGAGTAGTAATTGAGagccctca
	******************************************************************************************
cbriggsae	(((..((.....(((((((((((..((..(((((((((((........))))..)))))))..))..)))))).))))).....))))).	0.970 -17.60

cbriggsae

chromosome:chrM:12797:12886:-1

{Repeats: no}

block2060 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.103	no	no	0.48/0.48	25/25/0.00	0.0	0.0	1	0	1	0	0	1	3arm	1	nd	0.25	2	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------AACGGAU-----------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------GAACGGATGGCTTGAGTCAATGTTG	25	1
cbriggsae	caactgataggcaccaatgtgtttgtaaacGAACGGATGGCTTGAGTCAATGTTG
	*******************************************************
	-----------------------------------------------------------------	NM_125682
	-----------------------------------------------------------------	NM_112886
	-----------------------------------------------------------------	NM_020066
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_016802
cbriggsae	((((((((((((....((.((((((....)))))).)).))))..))))..))))	0.980 -13.30

cbriggsae

chromosome:chrIV:3462273:3462327:-1

Opposite_strand|Intronic_coding|NM_125682|ARAC10/ATRAC10/ATROP11 ## Opposite_strand|Intronic_non-coding|NM_112886|ATATM ## Same_strand|Intronic_non-coding|NM_016802|Rhoa ## {Repeats: no}

block1874 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.060	no	no	0.62/0.62	21/21/1.00	0.0	0.0	1	0	1	0	23	9	3arm	1	nd	0.19	2	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------UUGGUGG------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------------------------------------ATTGGTGGTCCGCCAGGAGCT-----------------------	21	1
cbriggsae	ggtggtggcatgtatggtggtcctcctggccgattgtactgtggtggtccttgtggatgtcccATTGGTGGTCCGCCAGGAGCTgaaataatcattgtccttaatct
	***********************************************************************************************************
	---------------------------------------------------------------------------------------------------------------------	NM_001033345
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_069815
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001034977
	-------------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<--------------------------------	NM_067333
cbriggsae	(((...((((...(((((..((((((((((.(((..((((((((..((((....))))...)))).))))))).))))))))..))....))))))).))...))).	0.970 -34.30

cbriggsae

chromosome:chrIII_random:327550:327656:1

Opposite_strand|Intronic_coding|NM_001033345|Gm216 ## Same_strand|Intronic_coding|NM_069815|T22B3.3 ## Same_strand|Intronic_non-coding|NM_001034977|pi4kb ## Opposite_strand|Boundary_coding|NM_067333|cpf-2 ## {Repeats: no}

sblock86 [novel_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.26/0.40	19/21/0.67	0.0 0.7	0.0 0.7	6 3	0 0	1 1	0 0	24 36	7 -6	5arm 3arm_loop	14 14	nd nd	0.15 0.32	1 3	15	1	13	0

		reads	miRBase family seed
seed	-------------------------------------------------------------------------------------------GAAUAAG---------------	5	novel
seed	-------------------------GAAUAAG---------------------------------------------------------------------------------	5	novel
seed	---------------------------------------------------------GAAUAAG-------------------------------------------------	2	novel
seed	-----------------------------------------------------------AUAAGUA-----------------------------------------------	1	novel
seed	--------------------------AAUAAGU--------------------------------------------------------------------------------	1	novel
seed	--------------------------------------------------------------------------------------------AAUAAGU--------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------------------------------------------GGAATAAGTAGTACCAATGG---	20	3
	------------------------GGAATAAGTAGTACCAATGG---------------------------------------------------------------------	20	3
	--------------------------------------------------------GGAATAAGTAGTACCAATA--------------------------------------	19	2
	-------------------------GAATAAGTAGTACCAATGGT--------------------------------------------------------------------	20	1
	-------------------------------------------------------------------------------------------GAATAAGTAGTACCAATGGT--	20	1
	------------------------GGAATAAGTAGTACCAATG----------------------------------------------------------------------	19	1
	------------------------------------------------------------------------------------------GGAATAAGTAGTACCAATGGT--	21	1
	------------------------GGAATAAGTAGTACCAATGGT--------------------------------------------------------------------	21	1
	------------------------------------------------------------------------------------------GGAATAAGTAGTACCAATG----	19	1
	----------------------------------------------------------AATAAGTAGTACCAATATG------------------------------------	19	1
cbriggsae	gtaccaattcgatactactcactcGGAATAAGTAGTACCAATGGtactactcactcGGAATAAGTAGTACCAATAtggtactaattactcGGAATAAGTAGTACCAATGGtac
	*****************************************************************************************************************
	---------------------------------------------------------------------------------------------------------------------------	NM_011978
cbriggsae	((((((......(((((((...((.((.(((.((((((((.((((((((((...........))))))))))...)))))))).))).)).))...)))))))....))))))	0.500 -41.80

cbriggsae

chromosome:chrX:14751611:14751723:1

Opposite_strand|Intronic_non-coding|NM_011978|Slc27a2 ## {SimpF: trf}

block704 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.259	no	no	0.39/0.39	23/23/1.00	0.0	0.0	1	0	1	0	18	13	3arm	1	nd	0.22	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------UAUCGAG---------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------------------GTATCGAGTTTTCTGTTTGTCAG------------------	23	1
cbriggsae	tgaccggtctcaaaccttactattttcagattcagaaacgactaaaaggtacctcatttcttttacgagtgtccattgaGTATCGAGTTTTCTGTTTGTCAGaagaggttgagtaggcaa
	************************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007734
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007734
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033380
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_130386
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080630
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001846
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009926
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_130449
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033381
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007730
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001856
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001844
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_027770
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033381
	----------------------------------------------------------------------------------------------------------------------------------	NM_009930
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_016919
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080799
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003090
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003187
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033150
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087789
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011005
	----------------------------------------------------------------------------------------------------------------------------------	NM_001006951
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_203889
	----------------------------------------------------------------------------------------------------------------------------------	NM_134696
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_204790
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001006951
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001081764
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087789
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087791
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001014971
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003187
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214509
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214510
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001014971
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001033832
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079401
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205305
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_174520
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105289
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105288
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105433
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001088739
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_204790
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001033832
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039599
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001088739
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_174520
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001031311
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080805
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080810
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001845
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_015734
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_015734
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_015734
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007743
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_177732
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080809
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080803
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079992
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080801
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_025685
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_213264
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001108870
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001106858
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007731
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001113224
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001844
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000088
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033380
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007742
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_152890
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033150
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001101980
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020272
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007734
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007735
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134452
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007740
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009929
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080815
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_201478
	----------------------------------------------------------------------------------------------------------------------------------	NM_201478
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_131292
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_005203
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007729
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007729
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_015719
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_147881
	----------------------------------------------------------------------------------------------------------------------------------	NM_058794
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182968
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_053356
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001130103
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001854
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080680
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080813
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009929
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080806
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080681
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080630
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080802
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080804
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001109991
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_172604
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083844
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001109172
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080811
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080679
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_032085
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007733
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080800
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199214
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_212528
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_212528
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080808
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007742
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080814
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007737
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080812
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080807
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007735
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080798
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000495
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000495
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000494
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000092
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000393
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000090
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000093
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000093
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000089
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122918
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122918
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001123230
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001126964
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001001135
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001130548
	<<<<<<<...........................................................................................................................	NM_064142
cbriggsae	((.((...(((.((((((......(((.(((.(((((..((((....((((.((((...(((....))).......)))))))).)))))))))...))).))))))))))))..)))).	0.960 -26.80

cbriggsae

chromosome:chrII:7345994:7346113:-1

Same_strand|Intronic_coding|NM_007734|Col4a3 ## Opposite_strand|Intronic_coding|NM_009930|Col3a1 ## Same_strand|Intronic_non-coding|NM_001079401|col24a1 ## {Repeats: no}

block324 [novel_RNA_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.104	Opposite_strand\|Intronic_coding\|NM_004198\|CHRNA6	no	0.58/0.58	26/26/0.00	0.0	0.0	1	0	1	0	13	5	5arm	1	nd	0.19	2	1	1	na	na

		reads	miRBase family seed
seed	--------------UUGGCUU----------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------GTTGGCTTCAGGCAGCAACCAATGGG----------------------------------------------------------------------	26	1
cbriggsae	aggttttaagtttGTTGGCTTCAGGCAGCAACCAATGGGacaaccatcatctcgcgttgctccgtttgtttggcaaatgcctcatgtgggtcagcagcatctttggcct
	*************************************************************************************************************
	-----------------------------------------------------------------------------------------------------------------------	NM_004198
	-----------------------------------------------------------------------------------------------------------------------	NM_001079560
	-----------------------------------------------------------------------------------------------------------------------	NM_001109928
	-----------------------------------------------------------------------------------------------------------------------	NM_001109948
	-----------------------------------------------------------------------------------------------------------------------	NM_079203
	-----------------------------------------------------------------------------------------------------------------------	NM_205364
	-----------------------------------------------------------------------------------------------------------------------	NM_174719
	-----------------------------------------------------------------------------------------------------------------------	NM_204416
	-----------------------------------------------------------------------------------------------------------------------	NM_001098221
	-----------------------------------------------------------------------------------------------------------------------	NM_001034114
	-----------------------------------------------------------------------------------------------------------------------	NM_001040327
	-----------------------------------------------------------------------------------------------------------------------	NM_201221
	-----------------------------------------------------------------------------------------------------------------------	NM_204814
	-----------------------------------------------------------------------------------------------------------------------	NM_001087183
	-----------------------------------------------------------------------------------------------------------------------	NM_001026507
	-----------------------------------------------------------------------------------------------------------------------	NM_001026506
	-----------------------------------------------------------------------------------------------------------------------	NM_001113843
	-----------------------------------------------------------------------------------------------------------------------	NM_009602
	-----------------------------------------------------------------------------------------------------------------------	NM_060043
	-----------------------------------------------------------------------------------------------------------------------	NM_001026508
	-----------------------------------------------------------------------------------------------------------------------	NM_060041
	-----------------------------------------------------------------------------------------------------------------------	NM_145129
	-----------------------------------------------------------------------------------------------------------------------	NM_024354
	-----------------------------------------------------------------------------------------------------------------------	NM_060042
	-----------------------------------------------------------------------------------------------------------------------	NM_000743
	-----------------------------------------------------------------------------------------------------------------------	NM_000744
	-----------------------------------------------------------------------------------------------------------------------	NM_052805
	.........................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-------------------------	NM_060006
cbriggsae	(((((..(((.((((((((((.(((((((.((.(((((..((((...........))))..))))).))...))...))))).....))))))))))...))).)))))	0.480 -32.00

cbriggsae

chromosome:chrI:5619546:5619654:1

Opposite_strand|Intronic_coding|NM_004198|CHRNA6 ## Opposite_strand|Boundary_non-coding|NM_060006|F53B6.4 ## {Repeats: no}

block4406 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.050	no	no	0.35/0.37	19/20/0.25	0.0	0.0	3	0	1	0	23	11	3arm	1	nd	0.42	5	4	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------CGUUAUG----------------------------------	4	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------CCGTTATGCTAGTGTTAAT-----------------------	19	3
	-------------------------------------------------------------------CCGTTATGCTAGTGTTAATT----------------------	20	1
cbriggsae	tgttaattaggtttttaagaaccgttacacgtgtaattaagctttagtaattttttgttattagggaCCGTTATGCTAGTGTTAATtgtcttttgtttctttttttgat
	*************************************************************************************************************
	-----------------------------------------------------------------------------------------------------------------------	NM_001087279
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_166414
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001046332
cbriggsae	.(((((..(((.....((((......(((((((((((....((((((((((.....))))))))))...)))))))..))))......)))).....)))....)))))	0.860 -19.40

cbriggsae

chromosome:chrX:4787639:4787747:-1

Opposite_strand|Intronic_non-coding|NM_001087279|fbxl5 ## Same_strand|Intronic_non-coding|NM_166414|Act57B ## {Repeats: no}

block2876 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.442	no	no	0.40/0.43	20/21/1.00	0.0	0.3	3	0	1	0	7	-3	3arm_loop	1	nd	0.33	3	3	1	na	na

		reads	miRBase family seed
seed	---------------------------------------UUCGUAG--------------------	3	novel
		len	cloning frequencies
			AF16
	--------------------------------------TTTCGTAGTCTTTTGTGTCGG-------	21	2
	--------------------------------------TTTCGTAGTCTTTTGTGTCG--------	20	1
cbriggsae	agtaatctcataaaatttatgcgtactaaaaaatgcaaTTTCGTAGTCTTTTGTGTCGGagaacta
	******************************************************************
cbriggsae	(((..((((((((((....((((..................))))...)))))))..)))..))).	0.820 -8.67

cbriggsae

chromosome:chrIV_random:464734:464799:-1

{Repeats: no}

block4727 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.496	no	no	0.45/0.45	22/22/1.00	0.0	0.0	1	0	1	0	3	14	5arm	8	nd	0.50	5	1	1	na	na

		reads	miRBase family seed
seed	----CCAGCUA----------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---TCCAGCTAGTGTGTGGTAGAAT--------------------------------------------------	22	1
cbriggsae	aatTCCAGCTAGTGTGTGGTAGAATgcttttactcgtgtagatgacacgtgtggtatctcaaacttgggtaatta
	***************************************************************************
	-------------------------------------------------------------------------------------	NM_203923
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001111199
	-------------------------------------------------------------------------------------	NM_001030661
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003666
cbriggsae	((((((....(((.((.((((........((((.(((((.....))))).)))))))).)).)))..)).)))).	0.820 -14.50

cbriggsae

chromosome:chrX:18774469:18774543:-1

Opposite_strand|Intronic_non-coding|NM_203923|abcb4 ## Same_strand|Intronic_non-coding|NM_001111199|zgc:173710 ## Same_strand|Intronic_coding|NM_001003666|Zfp457 ## {Repeats: no}

block1165 [novel_lenNOK_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.009	no	no	0.39/0.39	18/18/0.00	0.0	0.0	1	0	1	0	24	7	5arm	1	nd	0.39	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------AUGAUCA--------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------GATGATCACACTGTTCAA----------------------------------------------------------	18	1
cbriggsae	ggagttggcgaactgctgtttataGATGATCACACTGTTCAAgtagctctgatggggttccccgtggacggtattgttctgagcagcaggcgctagttcg
	****************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062055
	--------------------------------------------------------------------------------------------------------------	NM_062055
	--------------------------------------------------------------------------------------------------------------	NM_074739
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_204717
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_174951
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061898
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061996
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062066
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062066
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061927
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061927
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061910
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061910
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061900
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061903
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001001460
	--------------------------------------------------------------------------------------------------------------	NM_001129182
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001129182
cbriggsae	.((..(((((..((((((((((..((..((...((((((((...(((((.....))))).....))))))))))..)).)))))))))).)))))..)).	0.570 -37.40

cbriggsae

chromosome:chrII_random:1423398:1423497:-1

Same_strand|Intronic_coding|NM_062055|sri-54 ## Opposite_strand|Intronic_coding|NM_062055|sri-54 ## Same_strand|Intronic_non-coding|NM_204717|ECE1 ## {Repeats: no}

block1885 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.166	no	no	0.50/0.63	21/27/0.90	0.0	0.3	7	0	1	0	15	-8	3arm	20	nd	0.52	7	10	1	na	na

		reads	miRBase family seed
seed	-------------------------------------CCUUAGG------------------------------	7	novel
seed	---------------------------------------------CGCUGGU----------------------	1	novel
seed	-----------------------------------------AGGUCGC--------------------------	1	novel
seed	----------------------------------------UAGGUCG---------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------TCCTTAGGTCGCTGGTTCGAATC---------------	23	5
	------------------------------------TCCTTAGGTCGCTGGTTCGAAT----------------	22	2
	----------------------------------------TAGGTCGCTGGTTCGAATCCG-------------	21	1
	---------------------------------------TTAGGTCGCTGGTTCGAATCCG-------------	22	1
	--------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA---	27	1
cbriggsae	agttggtagagcggaggactgtagagtcagtgggtaTCCTTAGGTCGCTGGTTCGAATCcggctcgacggattt
	**************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_117106
cbriggsae	((((.((.((((...(((.....((..((((((...........))))))..))...))).)))).)).)))).	0.990 -21.90

cbriggsae

chromosome:chrIII_random:790810:790883:1

Same_strand|Intronic_non-coding|NM_117106|NIP5;1/NLM6/NLM8 ## {Repeats: no}

block3494 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.317	no	no	0.38/0.38	24/24/1.00	0.0	0.0	1	0	1	0	30	-4	5arm_loop_3arm	2	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------AAGAAAG---------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------TAAGAAAGGAGAAGGCTTAGTAGT-----------------------------------------------------------	24	1
cbriggsae	gttttacatcgatgttgtattcagataatcTAAGAAAGGAGAAGGCTTAGTAGTttagactgttcttctattaaataatctgacgtgatattagtttaattcattgtgagata
	*****************************************************************************************************************
cbriggsae	((((((((..(((((((...((((((.((.(((...(((((((((..(((....)))..)).))))))).))).)).))))))..)))))))............)))))))).	0.510 -18.84

cbriggsae

chromosome:chrUn:4252453:4252565:1

{Repeats: no}

block1185 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.404	no	no	0.40/0.40	20/20/1.00	0.0	0.0	1	0	1	0	9	28	3arm	1	nd	0.20	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------------UUCGGAG---------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------------------------------TTTCGGAGATAGTAGTTGAG---------	20	1
cbriggsae	agaagtctctcaatacgttcactcgcggaccggatagttctaatggcctcgttgacgtctttcttgacgacggaaaagaattttcccaagcTTTCGGAGATAGTAGTTGAGaagtattcg
	************************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001012230
cbriggsae	.(((...(((((((((.....(((.((((..(((.((((((.....(((((((((........))))))).))...)))))).)))......)))))))...))).))))))....))).	0.870 -29.10

cbriggsae

chromosome:chrII_random:2031245:2031364:-1

Same_strand|Intronic_non-coding|NM_001012230|Xkrx ## {Repeats: no}

block2401 [novel_lenNOK_cloningOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.871	no	no	0.53/0.53	19/19/0.00	0.0	0.0	6	0	1	0	1	29	3arm	1	nd	0.37	3	6	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------------------------AGCUGCA------------	6	novel
		len	cloning frequencies
			AF16
	---------------------------------------------------------------------------------CAGCTGCATCGTTCGTATG-	19	6
cbriggsae	ctactacaaagtgtcggatgtcggcattcgcaatacggatttctcaccatgtggtcgcttcgtcgttgcggttattgaggaCAGCTGCATCGTTCGTATGg
	*****************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047559
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075433
	---------------------------------------------------------------------------------------------------------------	NM_075433
cbriggsae	.(((.((...(((.(((.((((..((.((((((((((((......(((....)))...))))).)))))))....))..)))).)))))).))..)))...	0.570 -23.90

cbriggsae

chromosome:chrIV:1399074:1399174:1

Same_strand|Intronic_non-coding|NM_001047559|Y41E3.1 ## Same_strand|Intronic_coding|NM_075433|srt-45 ## Opposite_strand|Intronic_coding|NM_075433|srt-45 ## {Repeats: no}

block4347 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.233	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	10	2	3arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------AUUUGGC-----------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------GATTTGGCCCGGAAGCTTTTG----------	21	1
cbriggsae	gcttgaacttctgctggcattctctgccacagaccttcttGATTTGGCCCGGAAGCTTTTGgaagcatgcg
	***********************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070961
	---------------------------------------------------------------------------------	NM_001011629
	---------------------------------------------------------------------------------	NM_001047939
	---------------------------------------------------------------------------------	NM_001013793
	---------------------------------------------------------------------------------	NM_001094367
cbriggsae	((.((..((((((..(((.((((..(((((((......)))...))))..)))))))..)))))))).)).	0.580 -18.90

cbriggsae

chromosome:chrX:2156305:2156375:-1

Same_strand|Intronic_coding|NM_070961|ergo-1 ## Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_coding|NM_001047939|LOC499407 ## {Repeats: no}

block2704 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.111	no	no	0.43/0.43	23/23/1.00	0.0	0.0	1	0	1	0	5	19	3arm	1	nd	0.09	1	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------------CAUGCGA--------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------------------------GCATGCGAAATGATACCAGTCTT-----	23	1
cbriggsae	ttgcttgggccaacaagtggtgtgcatgtatcgcaatgccaatgttcgtagatgtggtactcccattgttcaagactagtGCATGCGAAATGATACCAGTCTTggcaa
	************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001069271
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214466
	----------------------------------------------------------------------------------------------------------------------	NM_182461
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033380
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_021760
	----------------------------------------------------------------------------------------------------------------------	NM_001022613
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214466
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007740
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134452
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001858
	----------------------------------------------------------------------------------------------------------------------	NM_011448
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	----------------------------------------------------------------------------------------------------------------------	NM_001105289
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001033832
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214509
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001033832
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011005
	----------------------------------------------------------------------------------------------------------------------	NM_000393
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007737
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_152888
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033381
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000495
	----------------------------------------------------------------------------------------------------------------------	NM_000090
	----------------------------------------------------------------------------------------------------------------------	NM_001004090
cbriggsae	.((((.((((.......((((((.(((...((((.((((....(((....((((.((....))))))......)))....)))))))).))))))))))))).)))).	0.690 -30.61

cbriggsae

chromosome:chrIV:9883982:9884089:1

Same_strand|Intronic_coding|NM_001069271|Os09g0271100 ## Opposite_strand|Intronic_coding|NM_182461|set-33 ## Opposite_strand|Intronic_non-coding|NM_011448|Sox9 ## Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## {Repeats: no}

block3271 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.757	no	no	0.48/0.48	21/21/1.00	0.0	0.0	2	0	1	0	9	13	5arm	7	nd	0.29	4	2	1	na	na

		reads	miRBase family seed
seed	----------CUUACGA------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	---------GCTTACGACCATATCACGTTG-----------------------------------------------------------------	21	2
cbriggsae	gagaaaaatGCTTACGACCATATCACGTTGaatgcacgccatcccgtccgatctggcaagttaagcaacgttgagtccagttagtacttggatcg
	***********************************************************************************************
	.................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.	NM_170601
cbriggsae	((...((.((((.(((((((....((((((...((..((((((......))..))))..))....)))))))).)))..)).)))).))...)).	0.690 -18.90

cbriggsae

chromosome:chrUn:5166289:5166383:-1

Opposite_strand|Boundary_non-coding|NM_170601|SIAE ## {Repeats: no}

block361 [novel_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.019	no	no	0.29/0.29	21/21/1.00	0.0	0.0	1	0	1	0	19	15	3arm	12	nd	0.43	5	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AUAUGAU--------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------TATATGATTTTTGGAACCTAG-------------------	21	1
cbriggsae	tagctaagatcaaagtgtagtatctgttcttatcgtattaacctacggtatacactcgaatgagtgtaataaaggtTATATGATTTTTGGAACCTAGgaaagactcggggcttgct
	********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008855
	------------------------------------------------------------------------------------------------------------------------------	NM_176035
	------------------------------------------------------------------------------------------------------------------------------	NM_205985
	------------------------------------------------------------------------------------------------------------------------------	NM_205986
	------------------------------------------------------------------------------------------------------------------------------	NM_001011629
	------------------------------------------------------------------------------------------------------------------------------	NM_102365
	------------------------------------------------------------------------------------------------------------------------------	NM_001084127
	------------------------------------------------------------------------------------------------------------------------------	NM_001009899
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010029
cbriggsae	.(((.(((.((..(((.........(((((.((((((.((((((...((.(((((((....)))))))))..))))))))))))....))))).........)))..)).))))))	0.900 -29.47

cbriggsae

chromosome:chrI:8192559:8192674:1

Same_strand|Intronic_non-coding|NM_008855|Prkcb1 ## Opposite_strand|Intronic_coding|NM_176035|nAcRalpha-34E ## Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_coding|NM_010029|Ddx4 ## {Repeats: no}

sblock8 [novel_lenNOK_cloningOK_multiarm_DicerNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.338	no	no	0.32/0.58	22/26/0.11	5.0 0.0	3.0 0.0	2 7	0 0	1 1	0 0	7 9	19 19	5arm 3arm	1 4	nd nd	0.36 0.27	3 2	9	1	0	6

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------UGGAGAG---------------------------	7	novel
seed	------------------AUGGAAA-----------------------------------------------------------------------------------------------	1	novel
seed	--------AAAGGUU---------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------------------------ATGGAGAGTCCAATCCAGGCGACAGC---------	26	7
	-----------------GATGGAAAGTGATTTTTTCCTT---------------------------------------------------------------------------------	22	1
	-------GAAAGGTTTCGATGGAAAGTGATTTT---------------------------------------------------------------------------------------	26	1
cbriggsae	tatatttgaaaggtttcgatggaaagtgattttttccttgggtcggccaagtcttcagaagaggtcctcggaggcagttgggtccATGGAGAGTCCAATCCAGGCGACAGCcgaatatgc
	************************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	----------------------------------------------------------------------------------------------------------------------------------	NM_199320
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_014333
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_170676
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_170675
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_170674
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001098517
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_170677
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_058286
cbriggsae	(((((((....(((((((.((((...((...((((((.((((....((((((((((((........)).))))))..)))).)))).))))))..)).))))..))).))))))))))).	0.420 -32.50

cbriggsae

chromosome:chrI:1139639:1139758:1

Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_non-coding|NM_199320|PHF17 ## Same_strand|Intronic_coding|NM_058286|ptr-11 ## {Repeats: no}

block3482 [novel_lenNOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.527	no	no	0.24/0.24	25/25/0.00	0.0	0.0	1	0	1	0	25	-1	3arm	3	nd	0.16	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------UGCAAAU------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------TTGCAAATTAAATGGTTATGGTTTT-------------------------	25	1
cbriggsae	tagtactactagtttaaaaaattagaaatcatagtataattttagtatatttaaTTGCAAATTAAATGGTTATGGTTTTtagtaagataggataatatagtcta
	********************************************************************************************************
cbriggsae	(((.((((....((((....(((((((((((((((.((((((..(((........)))))))))....)))))))))))))))....))))......)))))))	0.490 -12.90

cbriggsae

chromosome:chrUn:4250699:4250802:1

{Repeats: no}

block227 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.390	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	33	2	3arm	1	nd	0.35	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------AAUUAGG---------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------GAATTAGGACTGGAGATGGG---------------------------------	20	1
cbriggsae	tcgcaaaatgaacaagttgggaggggagtgtttatttatcgctcgggccgagtcaagaggaaaaattGAATTAGGACTGGAGATGGGaaaacaatacaaaacacaattcaagaaaacgaa
	************************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------------	NM_001093196
	----------------------------------------------------------------------------------------------------------------------------------	NM_061066
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067049
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_212577
	----------------------------------------------------------------------------------------------------------------------------------	NM_009594
cbriggsae	(((.....(((....((((.........(((((.((((((..((((.((...((((.........))))....)).)))).)))))).)))))..........)))))))......))).	0.480 -18.71

cbriggsae

chromosome:chrI:10467962:10468081:-1

Opposite_strand|Intronic_coding|NM_001093196|syk ## Opposite_strand|Intronic_non-coding|NM_061066|K03D10.3 ## Same_strand|Intronic_non-coding|NM_067049|Y47D3A.21 ## {Repeats: no}

block3030 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.123	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	11	13	5arm	49	nd	0.10	2	1	1	na	na

		reads	miRBase family seed
seed	------------CGUUCGU------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------GCGTTCGTGGTGTAATGGTC------------------------------------------------------------------------------	20	1
cbriggsae	gaggaacatgtGCGTTCGTGGTGTAATGGTCagcatggatgccttccaagcgcaggtgattcgtgattgaccaattacaggtatagggctataaacgaccaattactta
	*************************************************************************************************************
cbriggsae	(((.....((..((((..((((((((((((((((((((((((((.........)))).))))))).))))))).)))).........))))..))))..))....))).	0.760 -29.90

cbriggsae

chromosome:chrUn:1921504:1921612:-1

{Repeats: no}

block3120 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.682	no	no	0.36/0.36	22/22/1.00	0.0	0.0	1	0	1	0	0	16	5arm	5	nd	0.55	4	1	1	na	na

		reads	miRBase family seed
seed	-UUGAAUA--------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	TTTGAATAAGGTGGTAACCTTG------------------------------------------------------	22	1
cbriggsae	TTTGAATAAGGTGGTAACCTTGaggtcactgtcacaaataggttttttaatagttactttgggtctaggtttgaga
	****************************************************************************
cbriggsae	((..(((....(((....((..((((.(((((...(((.....)))...))))).))))..)).))).)))..)).	0.720 -11.80

cbriggsae

chromosome:chrUn:4427402:4427477:-1

{Repeats: no}

sblock46 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.685	no	no	0.22/0.33	18/26/0.33	0.0 0.5	0.0 4.5	1 2	0 0	1 1	0 0	33 2	-1 15	5arm_loop 3arm	2 2	nd nd	0.48 0.22	4 4	3	1	0	23

		reads	miRBase family seed
seed	------------------------------------------------------------------------------------UAGUAAG--------------------	1	novel
seed	-----------------------------------------------------------------------------------AUAGUAA---------------------	1	novel
seed	----------------------------------UAAAGAA----------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------------------------------------ATAGTAAGGTAAGTTTTACATCGATG--	26	1
	---------------------------------TTAAAGAATTACTCCGGAGTT---------------------------------------------------------	21	1
	----------------------------------------------------------------------------------TATAGTAAGGTAAGTTTT-----------	18	1
cbriggsae	aatattatataatagtattttactatatttaatTTAAAGAATTACTCCGGAGTTaacagaaaatcatacctaatctagttctTATAGTAAGGTAAGTTTTACATCGATGtt
	***************************************************************************************************************
cbriggsae	((((((((.(((...((((((((((((..........(((((((....((.((..............))))....)))))))))))))))))))....))).)).))))))	0.400 -12.54

cbriggsae

chromosome:chrM:2704:2814:-1

{Repeats: no,AT_rich 1 38 -1 class=Low_complexity}

block2441 [novel_cloningOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.628	no	no	0.50/0.50	20/20/1.00	0.0	0.0	5	0	1	0	10	21	3arm	1	nd	0.40	3	5	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------UUCGAUU----------------------	5	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------------TTTCGATTGCACTGGTTCCG----------	20	5
cbriggsae	ctgacagttgagcaatgcggtcgtctatttccaacctgtttcaaaacttccttaaccgttctttgaatataccttttgttagTTTCGATTGCACTGGTTCCGaaaatcgtta
	****************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182271
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070350
cbriggsae	.((((.(((((((..((((((((...(((..(((...((((((((................))))))...))...)))..)))..))))))))...))))....))).))))	0.950 -17.79

cbriggsae

chromosome:chrIV:2156443:2156554:1

Same_strand|Intronic_coding|NM_182271|K02E7.4 ## {Repeats: no}

block414 [novel_lenNOK_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	2	38	5arm	1	nd	0.39	4	1	1	na	na

		reads	miRBase family seed
seed	---UUUGCUG------------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--GTTTGCTGGTTGGTTCAG--------------------------------------------------------------------------------------------------	18	1
cbriggsae	caGTTTGCTGGTTGGTTCAGgcttgagacttgagaagattgctcacttacgagattcgatatacgtccgtttcttggagcatcttccatctcaagactgaactcttccagatctctgg
	**********************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------------	NM_067602
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067049
	--------------------------------------------------------------------------------------------------------------------------------	NM_067650
	--------------------------------------------------------------------------------------------------------------------------------	NM_001047223
	--------------------------------------------------------------------------------------------------------------------------------	NM_001047222
	--------------------------------------------------------------------------------------------------------------------------------	NM_061879
	--------------------------------------------------------------------------------------------------------------------------------	NM_067617
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_078408
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_171570
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001129093
cbriggsae	(((....((((..(((((((.(((((((..((.(((((.(((((.....(((((..((.........))..)))))))))))))))))))))))).)))))))...))))....))).	1.000 -47.20

cbriggsae

chromosome:chrI:10145441:10145558:1

Opposite_strand|Intronic_coding|NM_067602|Y55F3BR.2 ## Same_strand|Intronic_non-coding|NM_067049|Y47D3A.21 ## Opposite_strand|Intronic_non-coding|NM_067650|Y104H12D.3 ## Same_strand|Intronic_coding|NM_078408|C53C11.4 ## {Repeats: no}

block4288 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.107	no	no	0.38/0.38	21/21/1.00	0.0	0.0	2	0	1	0	5	24	5arm	1	nd	0.33	3	2	1	na	na

		reads	miRBase family seed
seed	------UUUUGUG---------------------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	-----ATTTTGTGTTGATCGTTGTGG--------------------------------------------------------------------------------------	21	2
cbriggsae	tggacATTTTGTGTTGATCGTTGTGGagggagatctgaatttgtatatattttttcttcatatttcaccgaatctggtttacccgatacaactgtcgcatcacatagcccaa
	****************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------	NM_001002742
	--------------------------------------------------------------------------------------------------------------------------	NM_001094844
	--------------------------------------------------------------------------------------------------------------------------	NM_205171
	---------------------------------------------------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_001047737
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<---------------------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_001047736
	<<<<<<<<<<<<<<<<<<<<<------------------------------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_072102
cbriggsae	(((......((((.((((.((((((..((((((((.((.((.((..((((.........))))...)).)).)).))))).)))..)))))).))))...))))....))).	0.920 -25.50

cbriggsae

chromosome:chrV_random:713452:713563:1

Opposite_strand|Intronic_non-coding|NM_001002742|trappc1 ## Opposite_strand|Intronic_coding|NM_205171|SYT1 ## Opposite_strand|Boundary_coding|NM_001047736|rga-4 ## {Repeats: no}

block2904 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.672	no	no	0.43/0.43	21/21/1.00	0.0	0.0	2	0	1	0	28	6	5arm	2	nd	0.33	3	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------UCGUCGC----------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	----------------------------TTCGTCGCTTCATATGTATGG---------------------------------------------------------------------	21	2
cbriggsae	tttaattttctgtgaattctgattttgaTTCGTCGCTTCATATGTATGGcaattttcaaaaaatgattacaatgaagttacacctttttcgaatttcaacctttttgctgccattgga
	**********************************************************************************************************************
cbriggsae	((((((.....(((((...(((.(((((...((.(((((((.((((...((.(((....))).))..))))))))))).)).......)))))..))).....)))))....))))))	0.590 -15.10

cbriggsae

chromosome:chrIV_random:483217:483334:1

{Repeats: no}

block37 [novel_Multihit_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.471	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	19	-3	3arm_loop	47	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------UAAUGGU--------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------GTAATGGTCAGCATGGATGCC-------------------	21	1
cbriggsae	tctttagaatcttctagaagatgttctatgcgttcgtggtGTAATGGTCAGCATGGATGCCttccaagcattcgacgggg
	********************************************************************************
	------------------------------------------------------------------------------------------	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199320
	------------------------------------------------------------------------------------------	NM_014333
	------------------------------------------------------------------------------------------	NM_170676
	------------------------------------------------------------------------------------------	NM_170675
	------------------------------------------------------------------------------------------	NM_170674
	------------------------------------------------------------------------------------------	NM_001098517
	------------------------------------------------------------------------------------------	NM_170677
	------------------------------------------------------------------------------------------	NM_061553
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067080
	------------------------------------------------------------------------------------------	NM_058292
cbriggsae	(((...(((((((...((((..((.((((((..((((......))))...))))))))..)))).))).))))...))).	0.530 -18.80

cbriggsae

chromosome:chrI:1287335:1287414:-1

Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_non-coding|NM_199320|PHF17 ## Opposite_strand|Intronic_coding|NM_061553|C13A10.1 ## Same_strand|Intronic_coding|NM_067080|Y66D12A.21 ## {Repeats: no}

block568 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.092	no	no	0.27/0.27	22/22/1.00	0.0	0.0	1	0	1	0	10	0	5arm	1	nd	0.23	2	1	1	na	na

		reads	miRBase family seed
seed	-----------GUACUUG--------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------AGTACTTGTTCCATCAATTTTT------------------------------------	22	1
cbriggsae	gtcaatgagaAGTACTTGTTCCATCAATTTTTcaaatccaaggagtttggaaaaaagaacttccgact
	********************************************************************
	------------------------------------------------------------------------------	NM_011074
	------------------------------------------------------------------------------	NM_001027762
	------------------------------------------------------------------------------	NM_001129008
cbriggsae	(((.....(((((.(((.(((((..(((((((........))))))))))))..))).))))).))).	0.830 -12.90

cbriggsae

chromosome:chrI_random:3135067:3135134:1

Opposite_strand|Intronic_non-coding|NM_011074|Pftk1 ## {Repeats: no}

block2512 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.510	no	no	0.37/0.37	19/19/0.00	0.0	0.0	1	0	1	0	26	6	5arm	2	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------------UUUUUGA------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------GTTTTTGAGTAGTGATGCT-------------------------------------------------------------------	19	1
cbriggsae	tgaacctccatgattctaaagtttacGTTTTTGAGTAGTGATGCTttccggtcccttttccggccctcaaaatgttcaattacctttcaaatttgttttttgatgcatttca
	****************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------	NM_001105717
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_198022
cbriggsae	.(((.....(((..((.((((...(((..((((((..(((((.....((((........))))...............)))))..))))))..))).))))))..)))))).	0.540 -15.85

cbriggsae

chromosome:chrIV:3104954:3105065:1

Opposite_strand|Intronic_non-coding|NM_001105717|Dpysl2 ## Same_strand|Intronic_non-coding|NM_198022|Tnrc6c ## {Repeats: no}

block2343 [novel_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.177	no	no	0.43/0.43	23/23/1.00	0.0	0.0	1	0	1	0	13	-2	3arm_loop	1	nd	0.26	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------UUGAAGA----------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------GTTGAAGAGAAATGAGAGCTTCG-------------	23	1
cbriggsae	tctttattttcggaagatgttcatttttacggttcgcgGTTGAAGAGAAATGAGAGCTTCGgcgagttggagag
	**************************************************************************
	------------------------------------------------------------------------------------	NM_079659
	------------------------------------------------------------------------------------	NM_206502
	------------------------------------------------------------------------------------	NM_169746
	------------------------------------------------------------------------------------	NM_169747
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001095500
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001024205
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001077467
	------------------------------------------------------------------------------------	NM_080629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_201478
	------------------------------------------------------------------------------------	NM_080630
	------------------------------------------------------------------------------------	NM_067556
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001078490
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001093393
	------------------------------------------------------------------------------------	NM_060547
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001080495
	------------------------------------------------------------------------------------	NM_001854
	------------------------------------------------------------------------------------	NM_059112
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_002069
cbriggsae	((((((..((((((((...(((((((((....((((....)))).)))))))))..))))..)))).)))))).	0.950 -17.70

cbriggsae

chromosome:chrIV:14894598:14894671:-1

Opposite_strand|Intronic_non-coding|NM_079659|cher ## Same_strand|Intronic_coding|NM_001095500|LOC496349 ## Same_strand|Intronic_non-coding|NM_001024205|Nufip2 ## Opposite_strand|Intronic_coding|NM_080629|COL11A1 ## {Repeats: no}

block921 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.251	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	16	16	5arm	1	nd	0.20	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------CAUCCAG----------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------TCATCCAGGTGCTGAGGAAT----------------------------------------------------------------------------------	20	1
cbriggsae	tacctctctttgagatTCATCCAGGTGCTGAGGAATtgacgatggaggattctctaaacgagccgcaacatcacgatagctgaatggcatcctggaaactacgggagcagaatgaggt
	**********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_004845
	--------------------------------------------------------------------------------------------------------------------------------	NM_001047951
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001093430
	--------------------------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_062999
	--------------------------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_063000
	--------------------------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_171015
	--------------------------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_171014
cbriggsae	.(((((..((((...(((.((((((((((..((.((((..((((..((.(((.......)))))....)))).))))..))....)))).)))))).......))).))))..)))))	0.900 -31.90

cbriggsae

chromosome:chrII:4933017:4933134:1

Same_strand|Intronic_non-coding|NM_004845|PCYT1B ## Opposite_strand|Intronic_coding|NM_001047951|LOC499796 ## {Repeats: no}

block560 [novel_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.761	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	8	12	3arm	47	nd	0.33	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------UAAUGGU---------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------GTAATGGTCAGCATGGATGCC--------	21	1
cbriggsae	gccttgtcgccttcatatcattgccctccgctaccttctccgtcgcagcgttcgtggtGTAATGGTCAGCATGGATGCCttccaagc
	***************************************************************************************
	-------------------------------------------------------------------------------------------------	NM_012655
	-------------------------------------------------------------------------------------------------	NM_001012534
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075505
	-------------------------------------------------------------------------------------------------	NM_013672
	-------------------------------------------------------------------------------------------------	NM_214128
cbriggsae	..((((..((.(((((((((((((((..((((..............)))).....)).))))))))....))))).))....)))).	0.590 -18.14

cbriggsae

chromosome:chrI_random:2960406:2960492:1

Opposite_strand|Intronic_non-coding|NM_012655|Sp1 ## Same_strand|Intronic_non-coding|NM_075505|psa-1 ## {Repeats: no}

block2705 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.231	no	no	0.63/0.63	19/19/0.00	0.0	0.0	1	0	1	0	12	-3	5arm_loop	1	nd	0.53	4	1	1	na	na

		reads	miRBase family seed
seed	-------------GCAGUGG--------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------TGCAGTGGGATGGTGCAGG---------------------------------	19	1
cbriggsae	caattagtccggTGCAGTGGGATGGTGCAGGagcagcacttgaccacactttttgacttttttg
	****************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033381
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000393
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007732
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007733
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009928
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_153393
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000093
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009930
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_032518
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_198747
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007729
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009936
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083844
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_130445
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001854
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001858
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205334
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080681
	--------------------------------------------------------------------------	NM_182461
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001101980
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001854
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007736
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080630
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033380
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033380
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_029838
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_021760
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007735
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007731
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003090
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003090
	--------------------------------------------------------------------------	NM_001022613
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080645
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_025685
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_032085
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001113224
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009929
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079992
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001856
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001856
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033641
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007736
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_181277
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_201478
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199473
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_201478
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007736
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080630
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214466
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_131292
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001045014
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001847
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001080091
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_016919
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001844
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007740
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001100911
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007740
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001106366
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134452
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007740
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001854
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007737
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001858
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009928
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_152890
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007733
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001106366
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_173465
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083844
	--------------------------------------------------------------------------	NM_011448
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001844
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009932
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007738
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080630
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007729
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007734
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214509
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011005
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083844
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003187
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001002979
	--------------------------------------------------------------------------	NM_141224
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205305
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001002979
	--------------------------------------------------------------------------	NM_078712
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001006951
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001014971
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001034039
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001046199
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001081764
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001081764
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001081764
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087652
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087789
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087789
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087791
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090075
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001093204
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105433
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_203889
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_203905
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_204790
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001005153
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011005
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001014971
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087352
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001095843
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001097192
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105288
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_203889
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_204164
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_204790
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214509
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001002979
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001002980
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003187
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001031818
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079401
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087789
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090075
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001093327
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205021
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214510
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011005
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_204164
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090075
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205021
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001046584
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001097192
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001095843
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087652
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001034039
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087352
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001080575
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_078485
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009926
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080680
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001109172
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080595
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_015734
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033150
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001854
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033150
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_024474
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134452
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033380
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001855
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_032518
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079992
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079992
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001106858
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000090
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009925
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_198711
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080679
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080630
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_131292
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001106858
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031366
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199214
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007732
	--------------------------------------------------------------------------	NM_068185
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001100911
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_004370
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007729
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_133457
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_152888
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031365
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001100911
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_181636
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001853
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_029838
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001855
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031362
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031365
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007737
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_152888
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031366
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001109991
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031362
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_172604
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007742
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_174634
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_027770
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031163
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007737
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033381
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007730
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001853
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033381
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009925
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_032085
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001115065
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001113515
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000495
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000495
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000495
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_030582
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000494
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000493
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000493
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000092
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000092
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000092
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000091
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000091
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000093
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000088
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001025721
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039630
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039630
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001080091
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001080091
	--------------------------------------------------------------------------	NM_001004090
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122918
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122918
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001123230
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001851
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001127025
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001001135
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_198721
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_198721
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001130275
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001130548
cbriggsae	(((..((((.......((((...(((((.......)))))...)))).......))))...)))	1.000 -16.64

cbriggsae

chromosome:chrIV:9962025:9962088:1

Same_strand|Intronic_coding|NM_033381|COL4A5 ## Opposite_strand|Intronic_coding|NM_182461|set-33 ## Same_strand|Intronic_non-coding|NM_025685|Col27a1 ## Opposite_strand|Intronic_non-coding|NM_011448|Sox9 ## {Repeats: no}

block1130 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.033	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	12	7	5arm	1	nd	0.32	2	1	1	na	na

		reads	miRBase family seed
seed	-------------AACAAGC---------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------GAACAAGCTGGAGCAGAGT----------------------------------------------------------	19	1
cbriggsae	ccaacgtcatctGAACAAGCTGGAGCAGAGTcgaaatctccatgaattcgtttccaggcaacacctttttcagatccaacacttttggc
	*****************************************************************************************
cbriggsae	((((.((.(((((((.(((.((..((.(((.((((.((.....)).)))).)))...))..)).))).)))))))...))....)))).	0.530 -20.90

cbriggsae

chromosome:chrII_random:298087:298175:-1

{Repeats: no}

block2660 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.402	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	20	14	5arm	1	nd	0.24	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------UCUUCGU-------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------TTCTTCGTCCATATACAGCGT------------------------------------------------------------------------	21	1
cbriggsae	gaattttacaaaatgttcatTTCTTCGTCCATATACAGCGTgcggcaaaagtatggtaacacaagtttcgcgcaagctggtgggcgcaggcgtacttttagtgtcctgaattc
	*****************************************************************************************************************
	---------------------------------------------------------------------------------------------------------------------------	NM_066961
cbriggsae	((((((.(((........((.(((.(((((((...((((.(((.(((((....((....))....))).))))).))))))))))).))).))........)))...))))))	0.640 -26.29

cbriggsae

chromosome:chrIV:8556915:8557027:1

Opposite_strand|Intronic_non-coding|NM_066961|W09D10.4 ## {Repeats: no}

block1366 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.784	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	4	7	5arm	1	nd	0.40	4	1	1	na	na

		reads	miRBase family seed
seed	-----AAUGAGU---------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----GAATGAGTCGGAGCTGTTCA---------------------------------------------	20	1
cbriggsae	aactGAATGAGTCGGAGCTGTTCAccaatccactgtcgggctcgaacggagcagtcgatgtcaaatggt
	*********************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001016781
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001005609
	-------------------------------------------------------------------------------	NM_001043354
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_111431
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001399
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_212504
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007473
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_136816
	-------------------------------------------------------------------------------	NM_001098634
	-------------------------------------------------------------------------------	NM_019027
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_131262
	-------------------------------------------------------------------------------	NM_067084
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001014761
cbriggsae	...(((....((((..(((((((.....(((......)))........))))))))))).)))......	0.600 -14.52

cbriggsae

chromosome:chrIII:3930189:3930257:-1

Same_strand|Intronic_non-coding|NM_001016781|LOC549535 ## Same_strand|Intronic_coding|NM_001005609|EDA ## Opposite_strand|Intronic_non-coding|NM_001043354|Rorb ## Opposite_strand|Intronic_coding|NM_067084|such-1 ## {Repeats: no}

block989 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.327	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	19	0	3arm	5	nd	0.43	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------UUGAGAU--------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------GTTGAGATGGTAGTTAACAGT-------------------	21	1
cbriggsae	acactcctagcgaaccgtgactgctatgcaacccttggctccttccGTTGAGATGGTAGTTAACAGTggattggttcacaatgtgt
	**************************************************************************************
	------------------------------------------------------------------------------------------------	NM_001047975
	------------------------------------------------------------------------------------------------	NM_001047939
	------------------------------------------------------------------------------------------------	NM_001047939
	------------------------------------------------------------------------------------------------	NM_127141
	------------------------------------------------------------------------------------------------	NM_001003414
	------------------------------------------------------------------------------------------------	NM_182152
	------------------------------------------------------------------------------------------------	NM_063631
	------------------------------------------------------------------------------------------------	NM_063623
	------------------------------------------------------------------------------------------------	NM_063620
	------------------------------------------------------------------------------------------------	NM_063619
	------------------------------------------------------------------------------------------------	NM_063628
	------------------------------------------------------------------------------------------------	NM_063626
	------------------------------------------------------------------------------------------------	NM_063625
	------------------------------------------------------------------------------------------------	NM_063630
	------------------------------------------------------------------------------------------------	NM_063617
	------------------------------------------------------------------------------------------------	NM_062054
	------------------------------------------------------------------------------------------------	NM_074369
	------------------------------------------------------------------------------------------------	NM_063618
	------------------------------------------------------------------------------------------------	NM_068454
cbriggsae	((((.......((((((...(((((..((.(((((..((.......))..))..))).))....)))))..)))))).....))))	0.760 -20.70

cbriggsae

chromosome:chrII:8204015:8204100:1

Opposite_strand|Intronic_coding|NM_001047975|LOC683871 ## Opposite_strand|Intronic_non-coding|NM_127141|SQN ## {Repeats: no}

block3115 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.682	no	no	0.36/0.36	22/22/1.00	0.0	0.0	1	0	1	0	0	16	5arm	5	nd	0.55	4	1	1	na	na

		reads	miRBase family seed
seed	-UUGAAUA--------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	TTTGAATAAGGTGGTAACCTTG------------------------------------------------------	22	1
cbriggsae	TTTGAATAAGGTGGTAACCTTGaggtcactgtcacaaataggttttttaatagttactttgggtctaggtttgaga
	****************************************************************************
cbriggsae	((..(((....(((....((..((((.(((((...(((.....)))...))))).))))..)).))).)))..)).	0.720 -11.80

cbriggsae

chromosome:chrUn:4223496:4223571:-1

{Repeats: no}

block4848 [novel_rep_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	DNA	0.39/0.39	23/23/1.00	0.0	0.0	4	0	1	0	18	5	3arm	1	nd	0.22	2	4	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------------------------AAGUGAA------------------------------------------------	4	miR-785/86
		len	cloning frequencies
			AF16
	---------------------------------------------------------------------------------TAAGTGAATTCTCTACCTTCGGT---------------------------------	23	4
cbriggsae	------GTGCTCACAGGCACAGCAGAAGTTAG--AGTATT------------TTCTCTTAGCCAACACATTGATTC---GCTAAGTGAATTCTCTACCTTCGGTTGTGTTG-------------ATTGAGGCATT--
celegans	TCTTGCGTCCCTAATAGTATTGCACTTCTTCGTTAGTATTGCAAACTCTTCATTCTTTTAGTCAAAAAAATTGTAC---GAAAAGTGAATTTGC-AGTTTCTATAGAGTTGCACTCTTAAATTAGCCGACACGTGGA
cjaponica	-------------AAGACGGTGAAGATTT-----------------------CTCTCCTTCCCAAGACCACGAAACCGAAGAAAGTGAA------AGATTAT-----------------------------CGTCCG
	* * * *** * *** * * ******* * ** * *
	+++++ ++++++++++++++++++++++++++ ++++++ ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++ +++++++++++ +++++	NM_001087279
	+++++ ++++++++++++++++++++++++++ ++++++ ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++ +++++++++++ +++++	NM_072843
	+++++ ++++++++++++++++++++++++++ ++++++ ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++ +++++++++++ +++++	NM_178655
	+++++ ++++++++++++++++++++++++++ ++++++ ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++ +++++++++++ +++++	NM_001034168
	----- -------------------------- ------ ------------------------ -------------------------------- ----------- -----	NM_001109816
	+++++ ++++++++++++++++++++++++++ ++++++ ++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++ +++++++++++ +++++	NM_065440
	----- -------------------------- ------ ------------------------ -------------------------------- ----------- -----	NM_020367
cbriggsae	(((((((..((((((((.((((.((( ((.... (((.((((((.((........)). )))))).)))..))))).)))).)))))))). ..)))).))).	1.000 -36.40
celegans	((.((.(((.(((((((...((((.((((....(((.((((((((...((((..(((((.(((((.....))).)) .)))))))))))))) )))..))).)))).))))..))...)))))..))).)).)).	0.995 -26.20
cjaponica	..((((((((...((( (.((.((((................))))..)).))) )..)))) ))))..	0.968 -13.39

cbriggsae	chromosome:chrX:4488214:4488312:1	Same_strand\|Intronic_non-coding\|NM_001087279\|fbxl5 ## Opposite_strand\|Intronic_coding\|NM_001109816\|MHC ## Opposite_strand\|Intronic_non-coding\|NM_020367\|PARP11 ## {Repeats: no}
celegans	chromosome:chrI:5715360:5715492:-1	intergenic ## {Repeats: CELE12B 72 154 -1 class=DNA}
cjaponica	chromosome:chrUn:138859703:138859841:-1	intergenic

block96 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.524	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	15	8	5arm	49	nd	0.25	2	1	1	na	na

		reads	miRBase family seed
seed	----------------CGUUCGU------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------GCGTTCGTGGTGTAATGGTC------------------------------------------------------------------	20	1
cbriggsae	tgtctctgtttcgccGCGTTCGTGGTGTAATGGTCagcatggatgccttccaagcacacaggccaggcgcgactgctggataacgggcgaacgccggggcg
	*****************************************************************************************************
	---------------------------------------------------------------------------------------------------------------	NM_026450
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_175692
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001037394
	---------------------------------------------------------------------------------------------------------------	NM_001087652
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_104594
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031795
	---------------------------------------------------------------------------------------------------------------	NM_115574
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001124041
	---------------------------------------------------------------------------------------------------------------	NM_001853
	---------------------------------------------------------------------------------------------------------------	NM_057771
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001031386
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001026315
cbriggsae	.(((((.((((((((.((((.((.((((..(((((.((.((((.....)))).)).....))))).)))).))........)))))))))).)).))))).	0.700 -36.90

cbriggsae

chromosome:chrI:3743779:3743879:-1

Opposite_strand|Intronic_non-coding|NM_026450|Zfp169 ## Same_strand|Intronic_non-coding|NM_175692|A930034L06Rik ## Opposite_strand|Intronic_coding|NM_001087652|col18sv-a ## Same_strand|Intronic_coding|NM_001031386|CIR ## {Repeats: no}

block5072 [novel_cloningOK_Multihit_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.35/0.40	19/21/0.83	0.0	0.0	3	0	1	0	8	25	5arm	14	nd	0.25	4	6	1	na	na

		reads	miRBase family seed
seed	---------GAAUAAG------------------------------------------------------------------------------------------------------	5	novel
seed	----------AAUAAGU-----------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------GGAATAAGTAGTACCAATGG------------------------------------------------------------------------------------------	20	3
	---------GAATAAGTAGTACCAATGGT-----------------------------------------------------------------------------------------	20	1
	--------GGAATAAGTAGTACCAATGGT-----------------------------------------------------------------------------------------	21	1
	--------GGAATAAGTAGTACCAATG-------------------------------------------------------------------------------------------	19	1
cbriggsae	acttactcGGAATAAGTAGTACCAATGGtactacttactcggaataagtagtaccaattcgatactacttactcggaataagtagtaccaattcgatactacttactcggaataagta
	**********************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------------	NM_011978
cbriggsae	(((((.((.((.(((((((((....((((((((((((.((.((.(((((((((.........))))))))).)).)).))))))))))))......))))))))).)).)).))))).	1.000 -48.90

cbriggsae

chromosome:chrX:14750527:14750644:1

Opposite_strand|Intronic_non-coding|NM_011978|Slc27a2 ## {SimpF: trf}

block1381 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.254	no	no	0.17/0.17	18/18/0.00	0.0	0.0	1	0	1	0	8	11	3arm	3	nd	0.39	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------UUGAUUG------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------TTTGATTGTAAGTTTTTT--------	18	1
cbriggsae	agttcgagatttcttcaagaactcaaaaccgtcaagaatggtatttggTTTGATTGTAAGTTTTTTtccatact
	**************************************************************************
	------------------------------------------------------------------------------------	NM_030820
	------------------------------------------------------------------------------------	NM_001102156
	------------------------------------------------------------------------------------	NM_001022613
cbriggsae	(((..((((...((((((((((.(((((((((.....))))).))))))))..))).)))....))))...)))	0.990 -12.40

cbriggsae

chromosome:chrIII:5538119:5538192:-1

Opposite_strand|Intronic_coding|NM_030820|COL21A1 ## {Repeats: no}

block1541 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.334	no	no	0.35/0.35	23/23/1.00	0.0	0.0	1	0	1	0	3	4	3arm	2	nd	0.39	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------GAUAUGU------------------	1	miR-50/62/90
		len	cloning frequencies
			AF16
	-----------------------------------TGATATGTAGATAATGCACCAAC---	23	1
cbriggsae	ctctttgtagcagtcaatgcacacaattaactgggTGATATGTAGATAATGCACCAACgag
	*************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028998
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028999
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029004
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029003
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029002
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029001
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039389
	-----------------------------------------------------------------------	NM_135472
	-----------------------------------------------------------------------	NM_164874
	-----------------------------------------------------------------------	NM_205951
	-----------------------------------------------------------------------	NM_205952
	-----------------------------------------------------------------------	NM_205953
	-----------------------------------------------------------------------	NM_001092606
	-----------------------------------------------------------------------	NM_001004296
	-----------------------------------------------------------------------	NM_064155
	-----------------------------------------------------------------------	NM_001122952
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075505
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_028763
	-----------------------------------------------------------------------	NM_065922
	-----------------------------------------------------------------------	NM_010905
	-----------------------------------------------------------------------	NM_065923
	-----------------------------------------------------------------------	NM_068002
	-----------------------------------------------------------------------	NM_067755
	-----------------------------------------------------------------------	NM_067378
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001031045
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001102968
cbriggsae	(((.(((..((((((.((((((.((......)).))).)))...)))..)))..))).)))	0.450 -10.80

cbriggsae

chromosome:chrIII:11517004:11517064:-1

Same_strand|Intronic_non-coding|NM_001028998|unc-62 ## Opposite_strand|Intronic_non-coding|NM_135472|nAcRalpha-30D ## Opposite_strand|Intronic_coding|NM_001004296|rdx ## {Repeats: no}

block3804 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.166	no	no	0.50/0.63	21/27/0.90	0.0	0.3	7	0	1	0	15	-8	3arm	20	nd	0.52	7	10	1	na	na

		reads	miRBase family seed
seed	-------------------------------------CCUUAGG------------------------------	7	novel
seed	---------------------------------------------CGCUGGU----------------------	1	novel
seed	-----------------------------------------AGGUCGC--------------------------	1	novel
seed	----------------------------------------UAGGUCG---------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------TCCTTAGGTCGCTGGTTCGAATC---------------	23	5
	------------------------------------TCCTTAGGTCGCTGGTTCGAAT----------------	22	2
	---------------------------------------TTAGGTCGCTGGTTCGAATCCG-------------	22	1
	----------------------------------------TAGGTCGCTGGTTCGAATCCG-------------	21	1
	--------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA---	27	1
cbriggsae	agttggtagagcggaggactgtagagtcagtgggtaTCCTTAGGTCGCTGGTTCGAATCcggctcgacggattt
	**************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_017182
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011821
	------------------------------------------------------------------------------------	NM_001016453
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134696
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001040230
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134696
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134696
	------------------------------------------------------------------------------------	NM_001041377
	------------------------------------------------------------------------------------	NM_001042144
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_072974
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079844
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182305
cbriggsae	((((.((.((((...(((.....((..((((((...........))))))..))...))).)))).)).)))).	0.990 -21.90

cbriggsae

chromosome:chrV:10972401:10972474:-1

Same_strand|Intronic_non-coding|NM_017182|H2afy ## Opposite_strand|Intronic_non-coding|NM_001016453|spg4 ## Same_strand|Intronic_coding|NM_134696|CG2839 ## Opposite_strand|Intronic_coding|NM_001041377|ECU05_1680 ## {Repeats: no}

block296 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.233	no	no	0.57/0.57	21/21/1.00	0.0	0.0	1	0	1	0	8	-2	5arm_loop	1	nd	0.52	4	1	1	na	na

		reads	miRBase family seed
seed	---------AUGCAGC-----------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------GATGCAGCAACTTCTCCTGGC----------------------------	21	1
cbriggsae	cactagagGATGCAGCAACTTCTCCTGGCatcactggatatggcagttcctaaagtg
	*********************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_026450
	-------------------------------------------------------------------	NM_001024290
	-------------------------------------------------------------------	NM_175692
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087652
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001089360
	-------------------------------------------------------------------	NM_013920
	-------------------------------------------------------------------	NM_004133
	-------------------------------------------------------------------	NM_104594
	-------------------------------------------------------------------	NM_031795
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_115574
	-------------------------------------------------------------------	NM_205811
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001109628
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001109626
	-------------------------------------------------------------------	NM_001124041
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001853
	<<<<<<-------------------------------------------------------------	NM_060219
cbriggsae	((((..((((.((.((....(((..((....))..)))....)).))))))..))))	0.940 -12.90

cbriggsae

chromosome:chrI:3808260:3808316:1

Same_strand|Intronic_non-coding|NM_026450|Zfp169 ## Opposite_strand|Intronic_non-coding|NM_001024290|Gal3st3 ## Same_strand|Intronic_coding|NM_001087652|col18sv-a ## Opposite_strand|Intronic_coding|NM_013920|Hnf4g ## {Repeats: no}

block1995 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.148	no	no	0.45/0.45	20/20/1.00	0.0	0.0	2	0	1	0	14	5	3arm	1	nd	0.35	3	2	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------UUAGGAC--------------------------	2	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------TTTAGGACGCAGTCGTTTTC--------------	20	2
cbriggsae	actgtttcaatgtccaagtaactttcttgaagattttaaattatcatTTTAGGACGCAGTCGTTTTCacgtatctacagta
	*********************************************************************************
cbriggsae	(((((....((((..(((..(((.((((((((((........)))..)))))))...)))..)))..))))....))))).	0.970 -13.50

cbriggsae

chromosome:chrIV:2362119:2362199:-1

{Repeats: no}

block1205 [novel_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.337	no	no	0.57/0.57	23/23/1.00	0.0	0.0	1	0	1	0	9	-4	5arm_loop	1	nd	0.26	5	1	1	na	na

		reads	miRBase family seed
seed	----------CAAAGCC------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------GCAAAGCCTTTCGGAGTCAGGAC---------------------------------------	23	1
cbriggsae	gcgacaagcGCAAAGCCTTTCGGAGTCAGGACaggtggctttgggaacgctttcttgcactgtcctttgca
	***********************************************************************
	---------------------------------------------------------------------------------	NM_053514
	---------------------------------------------------------------------------------	NM_018362
	---------------------------------------------------------------------------------	NM_001039354
	---------------------------------------------------------------------------------	NM_001033223
cbriggsae	(((((.((.(((((((.(((((((((((.......)))))))))))..))))...))).)))))....)).	0.750 -20.60

cbriggsae

chromosome:chrII_random:240435:240505:1

Opposite_strand|Intronic_coding|NM_053514|Lin7a ## Opposite_strand|Intronic_non-coding|NM_018362|LIN7C ## {Repeats: no}

block95 [novel_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.524	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	26	-4	5arm_loop	47	nd	0.43	5	1	1	na	na

		reads	miRBase family seed
seed	---------------------------UAAUGGU-------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------GTAATGGTCAGCATGGATGCC------------------------------------------------------	21	1
cbriggsae	tgtctctgtttcgccgcgttcgtggtGTAATGGTCAGCATGGATGCCttccaagcacacaggccaggcgcgactgctggataacgggcgaacgccggggcg
	*****************************************************************************************************
	---------------------------------------------------------------------------------------------------------------	NM_026450
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_175692
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001037394
	---------------------------------------------------------------------------------------------------------------	NM_001087652
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_104594
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031795
	---------------------------------------------------------------------------------------------------------------	NM_115574
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001124041
	---------------------------------------------------------------------------------------------------------------	NM_001853
	---------------------------------------------------------------------------------------------------------------	NM_057771
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001031386
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001026315
cbriggsae	.(((((.((((((((.((((.((.((((..(((((.((.((((.....)))).)).....))))).)))).))........)))))))))).)).))))).	0.700 -36.90

cbriggsae

chromosome:chrI:3743779:3743879:-1

block817 [novel_lenNOK_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.484	no	no	0.62/0.62	26/26/0.00	0.0	0.0	2	0	1	0	10	4	3arm	12	nd	0.35	3	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------GUGGGAC----------------------------	2	novel
		len	cloning frequencies
			AF16
	--------------------------------------------GGTGGGACGGATTGAGCCATGGCGAT----------	26	2
cbriggsae	cattgaagacgatcttggcgtttgattgagcttggatgtctcctGGTGGGACGGATTGAGCCATGGCGATgatttgatgg
	********************************************************************************
	------------------------------------------------------------------------------------------	NM_001030387
cbriggsae	(((..((..((.((.(((((((((.((..(((.(((....))).)))..)))))))...)))).))))....))..))).	0.510 -19.40

cbriggsae

chromosome:chrII:12814159:12814238:-1

Opposite_strand|Intronic_non-coding|NM_001030387|ARIH1 ## {Repeats: no}

block4619 [novel_rep_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	DNA	0.33/0.33	21/21/1.00	0.0	0.0	3	0	1	0	29	5	3arm	1	nd	0.14	2	3	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------------------------GAGGUAU-------------------------------------------------------	3	novel
		len	cloning frequencies
			AF16
	---------------------------------------------------------------------------------TGAGGTATTGTAAAAGCT-------------TAC-----------------------------	21	3
cbriggsae	---TTCCAATCACAACTCACGACTGGTAAGCTTGC--ACGATCACCTCTCAA-----------CCAGCAC----AATGAGTTGAGGTATTGTAAAAGCT-------------TACTGGTCGTTTTGAGCTGCAAATTGATTCGA
celegans	GAAATTTGACCGACTTAAAAAATTGAATATCTTGCCGTTCATCGACTTTAAAATACCCAAAATCAAGTTATTTAACTTCATTGAGGTATTTTAAAGTCGATGAACGGCAAGATATTGAATTTTTTTAAGTCGGTAAAATTTC--
cbrenneri	------------------GGAGCGCATTTGCATGC--GTCATTG-CTCAGAAG----------CTAGAAAAAGTAGCTTTTTGAGGTAT------------------------------------------GAAAATGCGCTCC
cjaponica	----------------CCGAAACGGGCT---------GCCACCGACTCCA-------------CAAG-------ATTTGTTTGAGGTAT-----------------------------------------GGCCTACGTTTCAC
ppacificus	--------------TATCGGGGCGGAACATTT-----GTGATAAGATTCCAAA----------TAAG-------AGTGATTGGAGGTATCTTTAA----------------------AATTTTCCTCGTTGATGAATATTTGCC
	* * ** * * *******
	----- -------------------------------- --------------- ------- ------------------------- -------------------------------------	NM_001026149
cbriggsae	.((.(((((((.((((((((..((((((((.. (((((.(((..(((( (((.... ..)).)))))))))))))..))))) )))..)))))...))).)).....))))).))	0.980 -40.00
celegans	(((((((.((((((((((((((((.((((((((((((((((((((((((((((((((...(((.(((((....))))).)))..)))))))))))))))))))))))))))))))).)))))))).)))))))).)))))))	1.000 -79.60
cbrenneri	(((((((((((.((((( .(((... ...((((( (((.......))))))))))).)))) ).)))))))))))	0.997 -33.70
cjaponica	..((((((.... ((((....(((.( ((.. ...)))..)))...) )))...))))))..	1.000 -16.20
ppacificus	((((((((.((((.(((( ..((((...((((((. ((.. ..)).)))))).))))....) ))).)))))).))))))..........	0.980 -16.90

cbriggsae	chromosome:chrX:15632368:15632478:-1	Opposite_strand\|Intronic_coding\|NM_001026149\|mes-6 ## {Repeats: no}
celegans	chromosome:chrI:2101818:2101959:-1	Opposite_strand\|Intronic_coding\|Y37E3.15b ## {Repeats: IR3_CE 1 304 -1 class=DNA}
cbrenneri	chromosome:chrUn:157172316:157172466:1	intergenic
cjaponica	chromosome:chrUn:143099139:143099289:1	intergenic
ppacificus	chromosome:chrUn:32101699:32101784:-1	intergenic

block3681 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.418	no	no	0.32/0.32	22/22/1.00	0.0	0.0	1	0	1	0	4	19	3arm	1	nd	0.32	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------AUGUCAA------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------AATGTCAAGGATCTGATTCTTT----	22	1
cbriggsae	cgtggatcaggtgctcctggatggtcctatttatcattgcggctttggtactcgcgatataatcgataatAATGTCAAGGATCTGATTCTTTtcga
	************************************************************************************************
	----------------------------------------------------------------------------------------------------------	NM_075157
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_074754
	----------------------------------------------------------------------------------------------------------	NM_074932
	----------------------------------------------------------------------------------------------------------	NM_074581
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_074580
	----------------------------------------------------------------------------------------------------------	NM_074580
	----------------------------------------------------------------------------------------------------------	NM_074935
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007590
	----------------------------------------------------------------------------------------------------------	NM_071059
	----------------------------------------------------------------------------------------------------------	NM_101553
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071405
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067315
cbriggsae	((.((((((((...((((.(((.(((....((((.(((((((.........)))))))))))..)))......))).))))))))))))....)).	0.440 -21.40

cbriggsae

chromosome:chrV:3373032:3373127:-1

Opposite_strand|Intronic_coding|NM_075157|F16H6.3 ## Same_strand|Intronic_coding|NM_074754|F26D2.13 ## Same_strand|Intronic_non-coding|NM_007590|Calm3 ## Opposite_strand|Intronic_non-coding|NM_101553|RAB11 ## {Repeats: no}

block4622 [novel_Multihit_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.856	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	0	17	3arm	49	nd	0.37	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------CGUUCGU------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------------GCGTTCGTGGTGTAATGGTC	20	1
cbriggsae	actgtcagtccatgtaatcgtttcgttttatttccgttacaatgtaaagagtgaacatgcGCGTTCGTGGTGTAATGGTC
	********************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001030307
cbriggsae	(((((....(((((....(((..((((((((((...((((...)))).))))))).))).)))..)))))....))))).	0.990 -13.30

cbriggsae

chromosome:chrX:15747130:15747209:-1

Same_strand|Intronic_non-coding|NM_001030307|Dkc1 ## {Repeats: no}

block883 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.249	no	no	0.39/0.39	18/18/0.00	0.0	0.0	1	0	1	0	14	16	3arm	7	nd	0.56	4	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------------AAUUGAC------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------------------------------------------CAATTGACACTGAAGAAC--------------	18	1
cbriggsae	gatttagaacactcccggctttagagaaaagaagacacaacgaaattaaaaattagttgtccattggtcCAATTGACACTGAAGAACtgagtgactacgtc
	*****************************************************************************************************
	---------------------------------------------------------------------------------------------------------------	NM_000215
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_131262
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000767
	---------------------------------------------------------------------------------------------------------------	NM_062405
cbriggsae	(((.(((..(((((....((((((....((...(((.(((.(((((((.....))))).))..))))))...))....))))))....))))).))).)))	0.400 -18.00

cbriggsae

chromosome:chrII:2523487:2523587:1

Opposite_strand|Intronic_non-coding|NM_000215|JAK3 ## Same_strand|Intronic_non-coding|NM_131262|myod1 ## {Repeats: no}

block2962 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.030	no	no	0.37/0.37	19/19/0.00	0.0	0.0	1	0	1	0	10	21	3arm	1	nd	0.32	4	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------------------CUUUCAG---------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------------------------------------------------ACTTTCAGTCAACTTTCAG----------	19	1
cbriggsae	tgaaattttgggctgaaaatagctgaaaatggtccaaaaattcgaaaaattcaagtttagctcgaaaaatctggaACTTTCAGTCAACTTTCAGatgattttca
	********************************************************************************************************
cbriggsae	.((((.((....((((((...(((((((....((((....(((((.((((....))))...))))).....))))..)))))))....))))))..)).)))).	0.870 -21.70

cbriggsae

chromosome:chrUn:47122:47225:-1

{Repeats: no}

block3699 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.603	no	no	0.39/0.39	18/18/0.00	0.0	0.0	1	0	1	0	4	22	5arm	7	nd	0.11	1	1	1	na	na

		reads	miRBase family seed
seed	-----AAUUGAC------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----CAATTGACACTGAAGAAC--------------------------------------------------------------------	18	1
cbriggsae	ggtcCAATTGACACTGAAGAACctgagtgactacgtcttcggcgtccactcgcctcttgtatactgttctgcgtcacgtcgttagtgcct
	******************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001038399
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071206
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070871
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071201
	----------------------------------------------------------------------------------------------------	NM_073477
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071221
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029049
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071906
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001038399
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001038398
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070813
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001038398
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071229
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071229
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070818
	----------------------------------------------------------------------------------------------------	NM_072677
	----------------------------------------------------------------------------------------------------	NM_073545
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071059
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009024
	----------------------------------------------------------------------------------------------------	NM_142040
	----------------------------------------------------------------------------------------------------	NM_001064034
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071377
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071696
	----------------------------------------------------------------------------------------------------	NM_071709
	----------------------------------------------------------------------------------------------------	NM_071708
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070810
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070809
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070809
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070808
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070806
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070807
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070814
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070813
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070813
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070807
cbriggsae	(((...((((((((((((((((...((((..((((.....((((......))))...)))))))))))))...))).)).))))))))).	0.640 -20.60

cbriggsae

chromosome:chrV:4491320:4491409:-1

Same_strand|Intronic_coding|NM_001038399|nhr-56 ## Opposite_strand|Intronic_coding|NM_073477|str-141 ## {Repeats: no}

block363 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.820	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	1	19	3arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------CUCUUGG--------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------------------GCTCTTGGGTGAATCTATCGT-	21	1
cbriggsae	atgtttgatgtgaacctgtatattgtgagcatcctccgccggcgcatagtcaggaataatgtcttttggaacatGCTCTTGGGTGAATCTATCGTa
	************************************************************************************************
	----------------------------------------------------------------------------------------------------------	NM_001103403
	----------------------------------------------------------------------------------------------------------	NM_012772
	----------------------------------------------------------------------------------------------------------	NM_007723
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_171630
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008855
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_171940
	.....................................................................................................<<<<<	NM_001025856
	.....................................................................................................<<<<<	NM_001025857
cbriggsae	(((...(((....(((((........((((((..((((..((.((((.((.....)).))))))..))))..)))))).)))))..)))...))).	0.410 -19.20

cbriggsae

chromosome:chrI:8309679:8309774:1

Opposite_strand|Intronic_coding|NM_001103403|tlk ## Same_strand|Intronic_non-coding|NM_171630|toca-1 ## {Repeats: no}

block4240 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.215	no	no	0.40/0.40	20/20/1.00	0.0	0.0	1	0	1	0	7	24	5arm	1	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	--------UUUGAUU-------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------GTTTGATTGTCTCATGGACT-------------------------------------------------------------------------	20	1
cbriggsae	tcgtatcGTTTGATTGTCTCATGGACTgtcgcttcatagttttgatcattgttatagtagtgttgaagacgtacatgccatgcaagcgagacgcatgcgg
	****************************************************************************************************
	--------------------------------------------------------------------------------------------------------------	NM_062385
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001089488
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001002170
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008425
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011764
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_077847
	......................................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_018364
	......................................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_172684
	..............................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_001029095
	..........................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_136069
	......................................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_001017304
	......................................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_001080977
	......................................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_198467
cbriggsae	.(((((((((...((((..(((((..((((((((((..........(((((......))))).))))).)).)))..)))))...)))))))).))))).	0.980 -25.70

cbriggsae

chromosome:chrV:15717542:15717641:1

Opposite_strand|Intronic_coding|NM_062385|twk-2 ## Same_strand|Intronic_non-coding|NM_001089488|zgc:162612 ## Same_strand|Intronic_coding|NM_077847|collagen ## {Repeats: no}

block1725 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.347	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	6	23	5arm	1	nd	0.29	4	1	1	na	na

		reads	miRBase family seed
seed	-------AGGAAAG---------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------GAGGAAAGCGTTGTTTTGAGT--------------------------------------------------------------------------------------	21	1
cbriggsae	tgatgcGAGGAAAGCGTTGTTTTGAGTcaattgctgatgtggtggacgagggaagtgttggatttgcaccactccagccggtgtagggaacaattgtggagctcctgggatca
	*****************************************************************************************************************
	---------------------------------------------------------------------------------------------------------------------------	NM_111381
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_139424
	---------------------------------------------------------------------------------------------------------------------------	NM_180185
	---------------------------------------------------------------------------------------------------------------------------	NM_023879
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001115091
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001085641
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080500
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080504
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_169728
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_169729
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_169730
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_206497
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_131119
	<<<<<----------------------------------------------------------------------------------------------------------------------	NM_001027525
	<<<<<----------------------------------------------------------------------------------------------------------------------	NM_001027524
cbriggsae	.(((...((((..((((((((((....((...((((..((((((..((((............))))))))))..))))...))...)))))))).)).....))))...))).	0.910 -26.70

cbriggsae

chromosome:chrIII:7152352:7152464:1

Opposite_strand|Intronic_non-coding|NM_111381|AT3G05090 ## Same_strand|Intronic_coding|NM_139424|CG11814 ## Opposite_strand|Intronic_coding|NM_023879|Rpgrip1 ## {Repeats: no}

block2669 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.028	no	no	0.43/0.43	21/21/1.00	0.0	0.0	2	0	1	0	1	14	3arm	1	nd	0.19	2	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------CCGUGUC--------------	2	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------TCCGTGTCTTGGTTCTATTAG-	21	2
cbriggsae	ctatagaaaaagatttgcggtttcaaaaaattgacatatttgataaacgaatgcaaaatgttaaTCCGTGTCTTGGTTCTATTAGa
	**************************************************************************************
	------------------------------------------------------------------------------------------------	NM_066961
	------------------------------------------------------------------------------------------------	NM_073293
	------------------------------------------------------------------------------------------------	NM_171337
cbriggsae	((((((((.(((((..((((.........((((((((.((((((......)).)))))))))))))))))))))..)))))).)).	0.970 -18.00

cbriggsae

chromosome:chrIV:8806746:8806831:1

Opposite_strand|Intronic_non-coding|NM_066961|W09D10.4 ## Opposite_strand|Intronic_coding|NM_073293|C35A5.3 ## {Repeats: no}

block2028 [novel_Multihit_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.465	no	no	0.30/0.30	20/20/1.00	0.0	0.0	1	0	1	0	14	-3	3arm_loop	43	nd	0.30	2	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------ACUUUUC--------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------TACTTTTCAAATGTGCCAAT--------------	20	1
cbriggsae	cgcttgccttaaaacccgcataggacaacttttcgaaaatgtTACTTTTCAAATGTGCCAATatgtgtttaatagc
	****************************************************************************
	--------------------------------------------------------------------------------------	NM_001047948
	--------------------------------------------------------------------------------------	NM_001047555
	--------------------------------------------------------------------------------------	NM_001047554
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068260
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068267
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068270
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_060105
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068253
cbriggsae	.(((....(((((...((((((((...((.(((.(((((......)))))))).)).))..))))))))))).)))	1.000 -10.50

cbriggsae

chromosome:chrIV:2874853:2874928:-1

Opposite_strand|Intronic_coding|NM_001047948|LOC499584 ## Same_strand|Intronic_coding|NM_068260|str-175 ## Same_strand|Intronic_non-coding|NM_060105|C17E4.9 ## {Repeats: no}

block5265 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.336	no	no	0.46/0.46	26/26/0.00	0.0	0.0	1	0	1	0	15	0	5arm	1	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	----------------UAGACGG------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------GTAGACGGCAGTCCTTATTTAACTGG------------------------------------------------	26	1
cbriggsae	agaaatgaacaacatGTAGACGGCAGTCCTTATTTAACTGGtcccatttctcgaatccaccaatgaggccgcctcagtttccaattcta
	*****************************************************************************************
cbriggsae	((((.((...(((.((.((.((((....((((((....(((...............)))..)))))))))).)))))))..)).)))).	0.440 -14.26

cbriggsae

chromosome:chrX:20402451:20402539:1

{Repeats: no}

block2423 [novel_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.62/0.62	21/21/1.00	0.0	0.0	2	0	1	0	27	5	5arm	1	nd	0.48	3	2	1	na	na

		reads	miRBase family seed
seed	----------------------------CCAAUGC------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	---------------------------TCCAATGCTCGGTCACCGTGG-----------------------------------------------------------	21	2
cbriggsae	tcctcttccatcccatacctcatttatTCCAATGCTCGGTCACCGTGGcgattttcaaggtcaccttatgtgaaaagaatggttaagtggggggggggggggggggt
	***********************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090906
	---------------------------------------------------------------------------------------------------------------------	NM_064155
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_113688
cbriggsae	(((((..((.((((...(((((((((..(((...((...((((...((.((((.....)))).))....))))..))..))).))))))))).))))))..))))).	0.650 -43.70

cbriggsae

chromosome:chrIV:1825441:1825547:1

Same_strand|Intronic_non-coding|NM_001090906|EEF1D ## Opposite_strand|Intronic_non-coding|NM_064155|Y17G7B.3 ## Same_strand|Intronic_coding|NM_113688|AT3G27720 ## {Repeats: no}

block4878 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.501	no	no	0.44/0.44	18/18/0.00	0.0	0.0	1	0	1	0	29	-3	5arm_loop	2	nd	0.67	4	1	1	na	na

		reads	miRBase family seed
seed	------------------------------CUGUUAC--------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------TCTGTTACGGTTTCCTTG----------------------------------------	18	1
cbriggsae	gtttctggaacaagttctctagaatcggcTCTGTTACGGTTTCCTTGagcggtccattccaaagtcgtcgttgaacaaaccagttgc
	***************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_172925
	-------------------------------------------------------------------------------------------------	NM_007496
	-------------------------------------------------------------------------------------------------	NM_001110231
	-------------------------------------------------------------------------------------------------	NM_004119
	-------------------------------------------------------------------------------------------------	NM_001110232
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007736
	-------------------------------------------------------------------------------------------------	NM_001110229
	-------------------------------------------------------------------------------------------------	NM_011058
	-------------------------------------------------------------------------------------------------	NM_006206
	-------------------------------------------------------------------------------------------------	NM_010160
	-------------------------------------------------------------------------------------------------	NM_001110228
	-------------------------------------------------------------------------------------------------	NM_001110230
	-------------------------------------------------------------------------------------------------	NM_001090075
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087789
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079250
	-------------------------------------------------------------------------------------------------	NM_001020811
	-------------------------------------------------------------------------------------------------	NM_001083316
	-------------------------------------------------------------------------------------------------	NM_077435
cbriggsae	((..((((.....((((....((..(((((.((....((...((......)).))....)).)))))))...))))...))))..))	0.880 -18.00

cbriggsae

chromosome:chrX:5876123:5876209:1

Same_strand|Intronic_non-coding|NM_172925|Klhl31 ## Opposite_strand|Intronic_non-coding|NM_007496|Zfhx3 ## Opposite_strand|Intronic_coding|NM_004119|FLT3 ## Same_strand|Intronic_coding|NM_007736|Col4a5 ## {Repeats: no}

block154 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.218	no	no	0.45/0.45	20/20/1.00	0.0	0.0	1	0	1	0	0	13	3arm	1	nd	0.32	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------AAUCGUC------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------TAATCGTCGCTCAAGTAGGT	20	1
cbriggsae	ccaactttttctgttttatgttagtcataaatcctgaaaaatctcaggttttccatTAATCGTCGCTCAAGTAGGT
	****************************************************************************
	--------------------------------------------------------------------------------------	NM_001087279
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_176035
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205985
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205986
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_102365
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001084127
cbriggsae	((.((((.....((...((((((((...(((.(((((......))))))))...))))).))).))..)))).)).	0.520 -10.60

cbriggsae

chromosome:chrI:7998697:7998772:-1

Opposite_strand|Intronic_non-coding|NM_001087279|fbxl5 ## Same_strand|Intronic_coding|NM_176035|nAcRalpha-34E ## {Repeats: no}

block4139 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.470	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	20	5	3arm	8	nd	0.30	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------UUUGAAU--------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------GTTTGAATGCAGGCCGTTGG--------------------	20	1
cbriggsae	ttggtggagtgtacgcacgagtcgcttcaaactggtgacgttggcgggaGTTTGAATGCAGGCCGTTGGggtgtaaaagatctgaagaa
	*****************************************************************************************
	---------------------------------------------------------------------------------------------------	NM_074155
	---------------------------------------------------------------------------------------------------	NM_001028773
	---------------------------------------------------------------------------------------------------	NM_001027854
	---------------------------------------------------------------------------------------------------	NM_074150
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001113262
	---------------------------------------------------------------------------------------------------	NM_136816
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001113262
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001113262
cbriggsae	((..((((...((((((((.(((((((((((((.....((....))..)))))))).)).))))))....))))).....))))..)).	0.890 -21.70

cbriggsae

chromosome:chrV:12162601:12162689:1

Opposite_strand|Intronic_non-coding|NM_074155|F47B8.10 ## Opposite_strand|Intronic_coding|NM_001028773|F47B8.14 ## Same_strand|Intronic_coding|NM_001113262|Fib-h ## {Repeats: no}

block1319 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.011	no	no	0.47/0.47	19/19/0.00	0.0	0.0	1	0	1	0	2	5	5arm	1	nd	0.26	3	1	1	na	na

		reads	miRBase family seed
seed	---AUGAAAC-------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--AATGAAACCGAGGGATCTG--------------------------------------	19	1
cbriggsae	aaAATGAAACCGAGGGATCTGgctcaacactttctgacttggattccaacgtttctttt
	***********************************************************
	---------------------------------------------------------------------	NM_001011629
	---------------------------------------------------------------------	NM_172925
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065286
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001093260
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009573
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_130279
cbriggsae	.....(((((...(((((((((.(((........))).)))))))))...)))))....	1.000 -15.20

cbriggsae

chromosome:chrIII:2263318:2263376:-1

Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_non-coding|NM_065286|Y53G8AR.6 ## {Repeats: no}

block2844 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.524	no	no	0.35/0.35	26/26/0.00	0.0	0.0	1	0	1	0	7	6	5arm	1	nd	0.31	3	1	1	na	na

		reads	miRBase family seed
seed	--------CUAAAAA--------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------GCTAAAAATCAGACATCATCTTCTTC--------------------------------------------------------------	26	1
cbriggsae	tcacattGCTAAAAATCAGACATCATCTTCTTCttcttcgaaaatgtgagtagaatttgaatgaatattgagaactgattctttttgaattgtgg
	***********************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065289
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064155
	---------------------------------------------------------------------------------------------------------	NM_061965
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075402
	---------------------------------------------------------------------------------------------------------	NM_001024205
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001026513
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001094113
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001091618
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001034557
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075282
	---------------------------------------------------------------------------------------------------------	NM_064619
	---------------------------------------------------------------------------------------------------------	NM_001028390
	---------------------------------------------------------------------------------------------------------	NM_001124458
cbriggsae	.((((.....(((((((((...(((..((((((...(((.............)))...))).)))...)))...)))))).)))......)))).	0.950 -13.72

cbriggsae

chromosome:chrIV:14454860:14454954:1

Same_strand|Intronic_non-coding|NM_065289|Y53G8AR.9 ## Opposite_strand|Intronic_non-coding|NM_061965|F08D12.1 ## {Repeats: no}

block639 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.020	no	no	0.22/0.22	18/18/0.00	0.0	0.0	2	0	1	0	0	35	5arm	1	nd	0.33	2	2	1	na	na

		reads	miRBase family seed
seed	-GAAAAAU---------------------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	TGAAAAATATGTTGTTTG-----------------------------------------------------------------------------------------	18	2
cbriggsae	TGAAAAATATGTTGTTTGctttctaaaagtttttgttcatcttgtgatttttaccacataaaaatcatgaacactgatttttcgcagcctgaatggctcatcattca
	***********************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061909
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_074979
	---------------------------------------------------------------------------------------------------------------------	NM_001047951
	..........................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	NM_074739
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070846
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061903
cbriggsae	.(((..((..((..((((((....(((((((..((((((.....(((((((((.....)))))))))))))))..)))))))...)))..)))..))..))..))).	0.740 -22.00

cbriggsae

chromosome:chrII:4685506:4685612:-1

Same_strand|Intronic_coding|NM_061909|sri-71 ## Opposite_strand|Intronic_coding|NM_001047951|LOC499796 ## {Repeats: no}

block1374 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.112	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	13	2	3arm	5	nd	0.14	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------UUGAGAU--------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------GTTGAGATGGTAGTTAACAGT-------------	21	1
cbriggsae	tgatgagcccacactcctagcgaactgtgactgctatgcaacctttggctccttccGTTGAGATGGTAGTTAACAGTggattggttcaca
	******************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134696
	----------------------------------------------------------------------------------------------------	NM_206876
	----------------------------------------------------------------------------------------------------	NM_002709
	----------------------------------------------------------------------------------------------------	NM_175389
	----------------------------------------------------------------------------------------------------	NM_172632
	----------------------------------------------------------------------------------------------------	NM_202770
cbriggsae	...((((((.....(((......((((((((((((((.((((....((......))))))..)))))))))).)))))))..))))))..	0.970 -25.10

cbriggsae

chromosome:chrIII:4910852:4910941:-1

Same_strand|Intronic_coding|NM_134696|CG2839 ## Opposite_strand|Intronic_non-coding|NM_206876|PPP1CB ## Opposite_strand|Intronic_coding|NM_202770|AT4G01985 ## {Repeats: no}

block4668 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.122	no	no	0.50/0.63	21/27/0.90	0.0	0.3	7	0	1	0	15	-8	3arm	20	nd	0.52	7	10	1	na	na

		reads	miRBase family seed
seed	-------------------------------------CCUUAGG------------------------------	7	novel
seed	---------------------------------------------CGCUGGU----------------------	1	novel
seed	-----------------------------------------AGGUCGC--------------------------	1	novel
seed	----------------------------------------UAGGUCG---------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------TCCTTAGGTCGCTGGTTCGAATC---------------	23	5
	------------------------------------TCCTTAGGTCGCTGGTTCGAAT----------------	22	2
	---------------------------------------TTAGGTCGCTGGTTCGAATCCG-------------	22	1
	----------------------------------------TAGGTCGCTGGTTCGAATCCG-------------	21	1
	--------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA---	27	1
cbriggsae	agttggtagagcggaggactgtagagtcagtggttaTCCTTAGGTCGCTGGTTCGAATCcggctcgacggattt
	**************************************************************************
	------------------------------------------------------------------------------------	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064155
	------------------------------------------------------------------------------------	NM_205032
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_063962
cbriggsae	((((.((.((((...(((.....((..((((((...........))))))..))...))).)))).)).)))).	0.990 -22.00

cbriggsae

chromosome:chrX:17005960:17006033:-1

Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_non-coding|NM_064155|Y17G7B.3 ## Same_strand|Intronic_coding|NM_063962|let-858 ## {Repeats: no}

block2919 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.112	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	16	-1	5arm_loop	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------UCUCUUG----------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------TTCTCTTGTGTTCCAAATTCG---------------------------------------------	21	1
cbriggsae	aaaatgtaaaatttacTTCTCTTGTGTTCCAAATTCGtccgaatttctggaaaattcgagtttttcgaaatttgaaaatttt
	**********************************************************************************
cbriggsae	(((((...((((((......((((..((((((((((....)))))..)))))....)))).......))))))....)))))	0.480 -13.42

cbriggsae

chromosome:chrIV_random:737221:737302:1

{Repeats: no}

block42 [novel_Multihit_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.191	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	12	-3	3arm_loop	47	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------UAAUGGU-------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------GTAATGGTCAGCATGGATGCC------------	21	1
cbriggsae	gaatcttctagaagatgttctatgcgttcgtggtGTAATGGTCAGCATGGATGCCttccaagcattc
	*******************************************************************
	-----------------------------------------------------------------------------	NM_001011629
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199320
	-----------------------------------------------------------------------------	NM_014333
	-----------------------------------------------------------------------------	NM_001098517
	-----------------------------------------------------------------------------	NM_061553
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067080
	-----------------------------------------------------------------------------	NM_001077534
	-----------------------------------------------------------------------------	NM_020120
	-----------------------------------------------------------------------------	NM_198899
	-----------------------------------------------------------------------------	NM_133596
	-----------------------------------------------------------------------------	NM_060083
	-----------------------------------------------------------------------------	NM_001025777
cbriggsae	(((((((...((((..((.((((((..((((......))))...))))))))..)))).))).))))	0.640 -16.50

cbriggsae

chromosome:chrI:1360165:1360231:-1

block347 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.734	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	11	17	3arm	1	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------------------------AAUAGGU------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------------------------------------GAATAGGTGGTAGCAAGTCAT-----------	21	1
cbriggsae	cgactgaggacgacgatatgatccttctgaaggtggaccgcgagacatggctcgagaaaataaacgcatgggcggagcttcctGAATAGGTGGTAGCAAGTCATcgtcgtagccg
	*******************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087279
	-----------------------------------------------------------------------------------------------------------------------------	NM_001075644
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_177732
	-----------------------------------------------------------------------------------------------------------------------------	NM_007732
	-----------------------------------------------------------------------------------------------------------------------------	NM_214466
	-----------------------------------------------------------------------------------------------------------------------------	NM_199473
	-----------------------------------------------------------------------------------------------------------------------------	NM_073882
	-----------------------------------------------------------------------------------------------------------------------------	NM_013361
	-----------------------------------------------------------------------------------------------------------------------------	NM_007740
	-----------------------------------------------------------------------------------------------------------------------------	NM_152890
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001081345
	-----------------------------------------------------------------------------------------------------------------------------	NM_013256
	-----------------------------------------------------------------------------------------------------------------------------	NM_001087019
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_069710
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001021292
	-----------------------------------------------------------------------------------------------------------------------------	NM_001022757
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_018869
cbriggsae	((.(((..(((((.(((.((..((.((((.(((.((.((((....((((.................)))).))))..)).)))...)))).))...)).))).))))).))).))	0.740 -30.63

cbriggsae

chromosome:chrI:7266958:7267072:1

Same_strand|Intronic_non-coding|NM_001087279|fbxl5 ## Opposite_strand|Intronic_coding|NM_001075644|ZNF180 ## Same_strand|Intronic_coding|NM_001081345|Chd2 ## Opposite_strand|Intronic_non-coding|NM_001087019|nr2f2 ## {Repeats: no}

sblock30 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.099	no	no	0.36/0.64	18/28/0.40	0.0 0.8 0.3	0.0 0.2 0.0	1 8 24	0 0 0	1 1 1	0 0 0	3 15 2	5 -13 9	5arm 5arm_loop_3arm 3arm	7 7 7	nd nd nd	0.35 0.36 0.45	3 4 6	48	1	4	3

		reads	miRBase family seed
seed	-------------------------------------------UCCUGGA-------------	20	novel
seed	------------------------------------------AUCCUGG--------------	10	novel
seed	-----------------UACUUGG---------------------------------------	4	novel
seed	----------------------------------GCCUGGG----------------------	3	novel
seed	-------------------CUUGGAU-------------------------------------	2	novel
seed	----------------GUACUUG----------------------------------------	2	novel
seed	------------------ACUUGGA--------------------------------------	2	novel
seed	-----------------------------------------AAUCCUG---------------	1	novel
seed	----------------------------------------GAAUCCU----------------	1	novel
seed	-------------------------------------UGGGAAU-------------------	1	novel
seed	----UGAGUCC----------------------------------------------------	1	novel
seed	------------------------------------CUGGGAA--------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------ATCCTGGATGTTGTAAGCT--	19	17
	-----------------------------------------AATCCTGGATGTTGTAAGCT--	20	7
	----------------GTACTTGGATCGGAGACGGCCTGGG----------------------	25	4
	---------------------------------GGCCTGGGAATCCTGGATGTTGTAAGCT--	28	3
	------------------------------------------ATCCTGGATGTTGTAAGCTT-	20	2
	------------------ACTTGGATCGGAGACGGCCTGG-----------------------	22	2
	---------------AGTACTTGGATCGGAGACGGCCTGGG----------------------	26	2
	-----------------------------------CCTGGGAATCCTGGATGTTGTAAGCT--	26	1
	-----------------------------------------AATCCTGGATGTTGTAAG----	18	1
	----------------------------------------GAATCCTGGATGTTGTAAGCT--	21	1
	-----------------------------------------AATCCTGGATGTTGTAAGCTT-	21	1
	---TTGAGTCCAGTTAGTACTTG----------------------------------------	20	1
	---------------------------------------GGAATCCTGGATGTTGTAAGCT--	22	1
	-----------------TACTTGGATCGGAGACGGCCTGG-----------------------	23	1
	-----------------------------------------AATCCTGGATGTTGTAAGCTTT	22	1
	------------------------------------------ATCCTGGATGTTGTAAGCTTT	21	1
	-----------------TACTTGGATCGGAGACGGCCTG------------------------	22	1
	------------------------------------CTGGGAATCCTGGATGTTGTAAGCT--	25	1
cbriggsae	acgttgagtccagttagtacttggatcggagacggcctgggAATCCTGGATGTTGTAAGCTtt
	***************************************************************
	-------------------------------------------------------------------------	NM_001092591
	-------------------------------------------------------------------------	NM_177186
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001030661
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027534
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027535
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066897
cbriggsae	(((....((((((...((.(((((..((....))..))))).)).))))))..))).......	0.990 -17.60

cbriggsae

chromosome:chrIII:8638773:8638835:-1

Opposite_strand|Intronic_non-coding|NM_001092591|MGC81879 ## Same_strand|Intronic_non-coding|NM_001030661|SETD1B ## {Repeats: no}

block561 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.019	no	no	0.40/0.40	25/25/0.00	0.0	0.0	2	0	1	0	1	17	5arm	1	nd	0.24	3	2	1	na	na

		reads	miRBase family seed
seed	--AUUACGG------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	-GATTACGGATTGCAACCATTTACAC-------------------------------------------------------------------	25	2
cbriggsae	cGATTACGGATTGCAACCATTTACACtgcaaattttgtagtctttgtagtctttgtagtttttgtagtttttgtagactttgcagtcagaatt
	*********************************************************************************************
	-------------------------------------------------------------------------------------------------------	NM_012655
	-------------------------------------------------------------------------------------------------------	NM_001012534
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075505
	-------------------------------------------------------------------------------------------------------	NM_013672
	<<<<<<<<<<<<<<<<<<<<<<<<...............................................................................	NM_074173
cbriggsae	.((((...((((((((...(((((((((((((..(((.((.((....)).))...)))..))))))))....)))))..))))))))..))))	0.970 -22.20

cbriggsae

chromosome:chrI_random:2969041:2969133:1

Opposite_strand|Intronic_non-coding|NM_012655|Sp1 ## Same_strand|Intronic_non-coding|NM_075505|psa-1 ## Opposite_strand|Boundary_non-coding|NM_074173|F23B12.1 ## {Repeats: no}

block3591 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.756	no	no	0.37/0.37	19/19/0.00	0.0	0.0	1	0	1	0	0	32	5arm	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	-AUUAAUA-------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	TATTAATACTAGGCAGTCC--------------------------------------------------------------------------------------	19	1
cbriggsae	TATTAATACTAGGCAGTCCaagtcaccattaaaaatagtacttttatgaaaaatctttcgaggttcagtttttttttttttttaaatcactgtttcccaattgat
	*********************************************************************************************************
	-------------------------------------------------------------------------------------------------------------------	NM_202770
	-------------------------------------------------------------------------------------------------------------------	NM_069018
cbriggsae	.((((((...(((((((.............((((((...(((((...((((....)))))))))...))))))...............)))))))....))))))	0.490 -9.59

cbriggsae

chromosome:chrUn:6451549:6451653:1

Opposite_strand|Intronic_coding|NM_202770|AT4G01985 ## {Repeats: no}

block1797 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.376	no	no	0.50/0.50	22/22/1.00	0.0	0.0	1	0	1	0	17	16	3arm	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------AAGGAUU-------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------------------GAAGGATTACAAGACGGGAGAG-----------------	22	1
cbriggsae	tcctttgatccatgccctctggtttactgtagtttcggatgtcgattcttcgagaagcgaatccacgttggaagGAAGGATTACAAGACGGGAGAGgggcatccatgctggga
	*****************************************************************************************************************
	---------------------------------------------------------------------------------------------------------------------------	NM_000209
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_170975
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027762
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007723
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011571
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001056446
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027705
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029059
	---------------------------------------------------------------------------------------------------------------------------	NM_075282
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_013665
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075505
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010466
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068079
	---------------------------------------------------------------------------------------------------------------------------	NM_075402
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065139
	---------------------------------------------------------------------------------------------------------------------------	NM_075413
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001025933
	---------------------------------------------------------------------------------------------------------------------------	NM_065455
	---------------------------------------------------------------------------------------------------------------------------	NM_067633
cbriggsae	((((.......(((((((((.((((..(((((((((.(((((.(((((..........))))).))))).))......))))))))))).)))...)))))).......))))	0.870 -32.84

cbriggsae

chromosome:chrIII:10526792:10526904:1

Opposite_strand|Intronic_non-coding|NM_000209|PDX1 ## Same_strand|Intronic_non-coding|NM_170975|C33C12.10 ## Same_strand|Intronic_coding|NM_007723|Cnga1 ## {Repeats: no}

block2538 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.819	no	no	0.40/0.40	20/20/1.00	0.0	0.0	4	0	1	0	0	11	3arm	1	nd	0.21	1	4	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------UUUGCAG------------	4	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------TTTTGCAGCGTTGTGTATTC	20	4
cbriggsae	gaaaaccactgtttcgaaaatctgatagtttttttggctagtagctagcgtaacTTTTGCAGCGTTGTGTATTC
	**************************************************************************
	------------------------------------------------------------------------------------	NM_016802
	------------------------------------------------------------------------------------	NM_012749
cbriggsae	(((.((((.((((.((((........((((...(((((.....)))))...)))))))).)))).)).)).)))	0.460 -10.70

cbriggsae

chromosome:chrIV:3654947:3655020:1

Opposite_strand|Intronic_non-coding|NM_016802|Rhoa ## Opposite_strand|Intronic_coding|NM_012749|Ncl ## {Repeats: no}

sblock52 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.099	no	no	0.36/0.64	18/28/0.40	0.0 0.8 0.3	0.0 0.2 0.0	1 8 24	0 0 0	1 1 1	0 0 0	3 15 2	5 -13 9	5arm 5arm_loop_3arm 3arm	7 7 7	nd nd nd	0.35 0.36 0.45	3 4 6	48	1	4	3

		reads	miRBase family seed
seed	-------------------------------------------UCCUGGA-------------	20	novel
seed	------------------------------------------AUCCUGG--------------	10	novel
seed	-----------------UACUUGG---------------------------------------	4	novel
seed	----------------------------------GCCUGGG----------------------	3	novel
seed	-------------------CUUGGAU-------------------------------------	2	novel
seed	----------------GUACUUG----------------------------------------	2	novel
seed	------------------ACUUGGA--------------------------------------	2	novel
seed	-----------------------------------------AAUCCUG---------------	1	novel
seed	----------------------------------------GAAUCCU----------------	1	novel
seed	-------------------------------------UGGGAAU-------------------	1	novel
seed	----UGAGUCC----------------------------------------------------	1	novel
seed	------------------------------------CUGGGAA--------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------ATCCTGGATGTTGTAAGCT--	19	17
	-----------------------------------------AATCCTGGATGTTGTAAGCT--	20	7
	----------------GTACTTGGATCGGAGACGGCCTGGG----------------------	25	4
	---------------------------------GGCCTGGGAATCCTGGATGTTGTAAGCT--	28	3
	------------------------------------------ATCCTGGATGTTGTAAGCTT-	20	2
	------------------ACTTGGATCGGAGACGGCCTGG-----------------------	22	2
	---------------AGTACTTGGATCGGAGACGGCCTGGG----------------------	26	2
	-----------------------------------CCTGGGAATCCTGGATGTTGTAAGCT--	26	1
	-----------------------------------------AATCCTGGATGTTGTAAG----	18	1
	----------------------------------------GAATCCTGGATGTTGTAAGCT--	21	1
	-----------------------------------------AATCCTGGATGTTGTAAGCTT-	21	1
	---TTGAGTCCAGTTAGTACTTG----------------------------------------	20	1
	---------------------------------------GGAATCCTGGATGTTGTAAGCT--	22	1
	-----------------TACTTGGATCGGAGACGGCCTGG-----------------------	23	1
	-----------------------------------------AATCCTGGATGTTGTAAGCTTT	22	1
	------------------------------------------ATCCTGGATGTTGTAAGCTTT	21	1
	-----------------TACTTGGATCGGAGACGGCCTG------------------------	22	1
	------------------------------------CTGGGAATCCTGGATGTTGTAAGCT--	25	1
cbriggsae	acgttgagtccagttagtacttggatcggagacggcctgggAATCCTGGATGTTGTAAGCTtt
	***************************************************************
cbriggsae	(((....((((((...((.(((((..((....))..))))).)).))))))..))).......	0.990 -17.60

cbriggsae

chromosome:chrUn:5165558:5165620:-1

{Repeats: no}

block1694 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.472	no	no	0.44/0.44	25/25/0.00	0.0	0.0	1	0	1	0	7	4	3arm	1	nd	0.28	2	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------AUAAGAA------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------GATAAGAAAGCTCAAGGAGCTTAGC-------	25	1
cbriggsae	gtaggtttctaagtttttgatgccgttgttggtcgttgatttccccgttGATAAGAAAGCTCAAGGAGCTTAGCatatctg
	*********************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066813
	-------------------------------------------------------------------------------------------	NM_127796
	-------------------------------------------------------------------------------------------	NM_134696
	-------------------------------------------------------------------------------------------	NM_134696
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001077541
	-------------------------------------------------------------------------------------------	NM_018785
	-------------------------------------------------------------------------------------------	NM_012760
	-------------------------------------------------------------------------------------------	NM_026275
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001082235
cbriggsae	.(((((..((((((((((((.((..((....((((.((.......)).))))..))..))))))).)))))))...)))))	0.820 -17.00

cbriggsae

chromosome:chrIII:5108909:5108989:1

Same_strand|Intronic_non-coding|NM_066813|R10E12.2 ## Opposite_strand|Intronic_non-coding|NM_127796|ATUBP4 ## Opposite_strand|Intronic_coding|NM_134696|CG2839 ## Same_strand|Intronic_coding|NM_001077541|clgn ## {Repeats: no}

block2813 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.552	no	no	0.61/0.61	18/23/0.50	0.0	2.5	2	0	1	0	7	-4	3arm_loop	1	nd	0.33	3	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------AGUCUGC----------------------	2	novel
		len	cloning frequencies
			AF16
	----------------------------------CAGTCTGCCAGGGATGTG------------	18	1
	----------------------------------CAGTCTGCCAGGGATGTGGAACC-------	23	1
cbriggsae	tattttttggcgccagaatgtagttctttacagaCAGTCTGCCAGGGATGTGGAACCgaacgat
	****************************************************************
	--------------------------------------------------------------------------	NM_064152
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067049
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065151
	--------------------------------------------------------------------------	NM_075282
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001106865
	--------------------------------------------------------------------------	NM_072208
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075402
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065139
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_171091
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067241
	--------------------------------------------------------------------------	NM_067285
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067755
	--------------------------------------------------------------------------	NM_064726
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182297
	--------------------------------------------------------------------------	NM_069121
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067597
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_073485
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_073512
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_073487
	--------------------------------------------------------------------------	NM_000090
	--------------------------------------------------------------------------	NM_001113224
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067080
	--------------------------------------------------------------------------	NM_031163
	--------------------------------------------------------------------------	NM_001027705
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007733
	--------------------------------------------------------------------------	NM_012929
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_131595
	--------------------------------------------------------------------------	NM_001087220
	--------------------------------------------------------------------------	NM_200495
	--------------------------------------------------------------------------	NM_001081764
	--------------------------------------------------------------------------	NM_001090075
	--------------------------------------------------------------------------	NM_205107
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001005153
	--------------------------------------------------------------------------	NM_001087258
	--------------------------------------------------------------------------	NM_198022
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_059821
	--------------------------------------------------------------------------	NM_131292
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075282
	--------------------------------------------------------------------------	NM_068122
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_032085
	--------------------------------------------------------------------------	NM_027770
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065139
	--------------------------------------------------------------------------	NM_181277
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068002
	--------------------------------------------------------------------------	NM_001087813
	--------------------------------------------------------------------------	NM_001113515
	--------------------------------------------------------------------------	NM_001001135
	--------------------------------------------------------------------------	NM_001130548
cbriggsae	.(((.(((((..(((.......((((((..(((.....)))..)))))).)))..))))).)))	0.690 -12.90

cbriggsae

chromosome:chrIV:13446228:13446291:1

Opposite_strand|Intronic_non-coding|NM_064152|ash-2 ## Same_strand|Intronic_non-coding|NM_067049|Y47D3A.21 ## Opposite_strand|Intronic_coding|NM_072208|K12B6.7 ## Same_strand|Intronic_coding|NM_065139|gip-1 ## {Repeats: no}

block40 [novel_Multihit_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.471	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	19	-3	3arm_loop	47	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------UAAUGGU--------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------GTAATGGTCAGCATGGATGCC-------------------	21	1
cbriggsae	tctttagaatcttctagaagatgttctatgcgttcgtggtGTAATGGTCAGCATGGATGCCttccaagcattcgacgggg
	********************************************************************************
	------------------------------------------------------------------------------------------	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199320
	------------------------------------------------------------------------------------------	NM_014333
	------------------------------------------------------------------------------------------	NM_001098517
	------------------------------------------------------------------------------------------	NM_061553
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067080
	------------------------------------------------------------------------------------------	NM_001077534
	------------------------------------------------------------------------------------------	NM_020120
	------------------------------------------------------------------------------------------	NM_198899
	------------------------------------------------------------------------------------------	NM_133596
	------------------------------------------------------------------------------------------	NM_060083
	------------------------------------------------------------------------------------------	NM_001025777
cbriggsae	(((...(((((((...((((..((.((((((..((((......))))...))))))))..)))).))).))))...))).	0.530 -18.80

cbriggsae

chromosome:chrI:1356615:1356694:-1

block1873 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.166	no	no	0.50/0.63	21/27/0.90	0.0	0.3	7	0	1	0	15	-8	3arm	20	nd	0.52	7	10	1	na	na

		reads	miRBase family seed
seed	-------------------------------------CCUUAGG------------------------------	7	novel
seed	---------------------------------------------CGCUGGU----------------------	1	novel
seed	-----------------------------------------AGGUCGC--------------------------	1	novel
seed	----------------------------------------UAGGUCG---------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------TCCTTAGGTCGCTGGTTCGAATC---------------	23	5
	------------------------------------TCCTTAGGTCGCTGGTTCGAAT----------------	22	2
	----------------------------------------TAGGTCGCTGGTTCGAATCCG-------------	21	1
	---------------------------------------TTAGGTCGCTGGTTCGAATCCG-------------	22	1
	--------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA---	27	1
cbriggsae	agttggtagagcggaggactgtagagtcagtgggtaTCCTTAGGTCGCTGGTTCGAATCcggctcgacggattt
	**************************************************************************
	------------------------------------------------------------------------------------	NM_001033345
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_069815
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027699
cbriggsae	((((.((.((((...(((.....((..((((((...........))))))..))...))).)))).)).)))).	0.990 -21.90

cbriggsae

chromosome:chrIII_random:265766:265839:1

Opposite_strand|Intronic_coding|NM_001033345|Gm216 ## Same_strand|Intronic_coding|NM_069815|T22B3.3 ## {Repeats: no}

block163 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.337	no	no	0.42/0.42	19/19/0.00	0.0	0.0	3	0	1	0	7	31	3arm	2	nd	0.32	2	3	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------------------------------AGUUUGU------------------	3	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------------------------------------------TAGTTTGTCTGATGGAGTC-------	19	3
cbriggsae	ctcgaaattttgtccgaaatcaaacaaatgaaaacaatttttcagtttcatcaagccttgataaaacttgtgaatctttgattatctaaTAGTTTGTCTGATGGAGTCaatgagt
	*******************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007386
cbriggsae	((((..((((..((.((...(((((....((.(((((...((((((((.((((.....)))).)))))...)))...))).)).)).....))))))).))..))))...)))).	0.400 -18.50

cbriggsae

chromosome:chrI:8608098:8608212:-1

Same_strand|Intronic_non-coding|NM_007386|Aco1 ## {Repeats: no}

block4497 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.458	no	no	0.52/0.52	21/21/1.00	0.0	0.0	2	0	1	0	16	6	5arm	2	nd	0.29	3	2	1	na	na

		reads	miRBase family seed
seed	-----------------AUGGAAG----------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	----------------GATGGAAGCTGGTCGTCAGAT---------------------------------------------------------	21	2
cbriggsae	caatgagagatggaatGATGGAAGCTGGTCGTCAGATcgttgggggcggagtcaaaagtcttgggacgaatgcgtcatggtgagagagcgttgg
	**********************************************************************************************
	--------------------------------------------------------------------------------------------------------	NM_007789
	--------------------------------------------------------------------------------------------------------	NM_001047210
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_076367
cbriggsae	(((((.........((.((((..((...(((((((((..((((........))))..))))...)))))..)).)))).)).......))))).	0.420 -20.49

cbriggsae

chromosome:chrX:9574479:9574572:-1

Opposite_strand|Intronic_non-coding|NM_007789|Ncan ## Same_strand|Intronic_coding|NM_076367|atg-16.1 ## {Repeats: no}

block3551 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.428	no	no	0.47/0.47	19/19/0.00	0.0	0.0	1	0	1	0	7	16	3arm	1	nd	0.32	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------UUUGCCG------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------------CTTTGCCGTCTTTGATTCC-------	19	1
cbriggsae	gttatagaaaaaaacacagtaaacaagaatatattgataacagaaatttaaaattatgataattttgcCTTTGCCGTCTTTGATTCCaataaca
	**********************************************************************************************
cbriggsae	(((((.(((..(((.((.((((((((((.(((..((((..............))))..))).)))))..))))).)).)))..)))..))))).	0.760 -10.04

cbriggsae

chromosome:chrUn:5348417:5348510:1

{Repeats: no}

block2520 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.053	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	18	8	3arm	1	nd	0.29	2	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------GCAUAGU-------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------TGCATAGTTCGGTGTCGAATG------------------	21	1
cbriggsae	tgagttgtaaaaacattttggtttcagatttgtgacaaagaaatatgggaaaatttataattttcagTGCATAGTTCGGTGTCGAATGaaaaaaaattgcacttca
	**********************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------	NM_001105717
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_198022
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020066
cbriggsae	.(((.((((.....(((((..(((((......(((((..(((.((((.((((((.....))))))....)))).)))..)))))..))))).))))))))).))).	0.890 -21.40

cbriggsae

chromosome:chrIV:3297743:3297848:1

Opposite_strand|Intronic_non-coding|NM_001105717|Dpysl2 ## Same_strand|Intronic_non-coding|NM_198022|Tnrc6c ## Same_strand|Intronic_coding|NM_020066|FMN2 ## {Repeats: no}

block387 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.867	no	no	0.29/0.29	21/21/1.00	0.0	0.0	1	0	1	0	9	18	3arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------------------AAGCACA----------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------------------------------TAAGCACAATTCTTCAAAATG---------	21	1
cbriggsae	gaaaaaaattttttgggagaagctgtttttttttaaattttctgtttcaaattgttctcaaagtttccgatttacagttttcgcggTAAGCACAATTCTTCAAAATGtaggttttc
	********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_100944
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001059280
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001050497
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001059517
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001082159
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_057483
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_204894
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001106587
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001126434
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_116413
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_116412
	------------------------------------------------------------------------------------------------------------------------------	NM_061648
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011530
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_022238
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001114583
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_032056
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_120473
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_060440
	------------------------------------------------------------------------------------------------------------------------------	NM_004098
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_100133
cbriggsae	(((((......(((.((((((..(((((.............((((...(((((((..((.........))...)))))))..)))).)))))...)))))).)))......)))))	0.660 -14.94

cbriggsae

chromosome:chrI:9056991:9057106:1

Same_strand|Intronic_coding|NM_100944|PGP10 ## Same_strand|Intronic_non-coding|NM_001106587|Tnpo3 ## Opposite_strand|Intronic_coding|NM_061648|sdz-18 ## Opposite_strand|Intronic_non-coding|NM_004098|EMX2 ## {Repeats: no}

block1628 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.248	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	6	0	3arm	8	nd	0.40	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------UUUGAAU------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------GTTTGAATGCAGGCCGTTGG------	20	1
cbriggsae	acgcttcaaactggtgacgttggcgggaGTTTGAATGCAGGCCGTTGGggtgta
	******************************************************
	----------------------------------------------------------------	NM_061066
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027762
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067650
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_060557
	----------------------------------------------------------------	NM_075282
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061817
	----------------------------------------------------------------	NM_075513
	----------------------------------------------------------------	NM_071129
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071129
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075409
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_172925
	----------------------------------------------------------------	NM_001129219
	----------------------------------------------------------------	NM_001027762
	----------------------------------------------------------------	NM_001090026
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079600
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_172541
	----------------------------------------------------------------	NM_067787
	----------------------------------------------------------------	NM_067659
	----------------------------------------------------------------	NM_075459
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061965
	----------------------------------------------------------------	NM_070558
	----------------------------------------------------------------	NM_064510
	----------------------------------------------------------------	NM_072208
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065010
	----------------------------------------------------------------	NM_065286
	----------------------------------------------------------------	NM_077859
	----------------------------------------------------------------	NM_001129266
cbriggsae	((((..(((...(((..(((((((....)))..))))...))).)))..)))).	0.850 -14.90

cbriggsae

chromosome:chrIII:1824437:1824490:1

Opposite_strand|Intronic_non-coding|NM_061066|K03D10.3 ## Same_strand|Intronic_coding|NM_001027762|smr-1 ## Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_coding|NM_075513|ZC15.5 ## {Repeats: no}

block1516 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.135	no	no	0.58/0.58	19/19/0.00	0.0	0.0	1	0	1	0	1	2	5arm	1	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	--CAUGGCC----------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-GCATGGCCAATGCCAACAG-----------------------------------------------	19	1
cbriggsae	tGCATGGCCAATGCCAACAGactcttcacatatccaatttccacttgtctgaacgcccacgccgtcg
	*******************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000209
	-----------------------------------------------------------------------------	NM_170975
	-----------------------------------------------------------------------------	NM_001027762
	-----------------------------------------------------------------------------	NM_007723
	-----------------------------------------------------------------------------	NM_001011571
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075282
	-----------------------------------------------------------------------------	NM_075505
	-----------------------------------------------------------------------------	NM_010466
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_133381
	-----------------------------------------------------------------------------	NM_065139
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075413
	-----------------------------------------------------------------------------	NM_001067238
	-----------------------------------------------------------------------------	NM_001067238
	-----------------------------------------------------------------------------	NM_001067238
	-----------------------------------------------------------------------------	NM_181934
cbriggsae	...(((((....((...(((((........................)))))...))....)))))..	0.860 -11.86

cbriggsae

chromosome:chrIII:10423025:10423091:-1

Same_strand|Intronic_non-coding|NM_000209|PDX1 ## Opposite_strand|Intronic_non-coding|NM_170975|C33C12.10 ## Opposite_strand|Intronic_coding|NM_007723|Cnga1 ## {Repeats: no}

block590 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.171	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	4	20	5arm	1	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	-----AAUUCCA--------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----CAATTCCAGAGTGCCATCGTT-------------------------------------------------------------------------	21	1
cbriggsae	cctcCAATTCCAGAGTGCCATCGTTtgccgaatattttgtgagtcttcgttgattgtcgaaattggccttggcatcgttgcggagtctgaaatttgag
	**************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001005457
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_058490
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075282
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182230
cbriggsae	.(((.((((.((((...((..((..((((((..((((((..((((......))))..)))))).....)))))).))....))..)))).)))).)))	0.690 -23.80

cbriggsae

chromosome:chrII:2014585:2014682:-1

Same_strand|Intronic_coding|NM_001005457|adsl ## Same_strand|Intronic_non-coding|NM_058490|Y71G12B.8 ## {Repeats: no}

block1435 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.260	no	no	0.45/0.45	20/20/1.00	0.0	0.0	1	0	1	0	12	5	5arm	1	nd	0.15	2	1	1	na	na

		reads	miRBase family seed
seed	-------------UUGUAGU----------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------ATTGTAGTTCATTTCCCGCC----------------------------------------------------	20	1
cbriggsae	cgccattttattATTGTAGTTCATTTCCCGCCtctgctgtggtgccttcggtagaagtgcagctgaacaatgatacacttgagt
	************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_060039
	----------------------------------------------------------------------------------------------	NM_001078568
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001075211
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_021863
	----------------------------------------------------------------------------------------------	NM_001108252
	----------------------------------------------------------------------------------------------	NM_068288
	----------------------------------------------------------------------------------------------	NM_059518
	----------------------------------------------------------------------------------------------	NM_067241
cbriggsae	.((((...(((((((((((((((((((..(((...((......))....))).)))))).))))..)))))))))....)).))	0.840 -19.50

cbriggsae

chromosome:chrIII:7748042:7748125:-1

Same_strand|Intronic_coding|NM_060039|T06D10.2 ## Opposite_strand|Intronic_coding|NM_001078568|LOC780716 ## Same_strand|Intronic_non-coding|NM_001075211|SNF8 ## Opposite_strand|Intronic_non-coding|NM_001108252|RGD1562211 ## {Repeats: no}

block1229 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.057	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	22	11	5arm	9	nd	0.29	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------CAGAAGA----------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------TCAGAAGAGATTGTGTGATGG---------------------------------------------------------------	21	1
cbriggsae	agtatgcatattccctagggacTCAGAAGAGATTGTGTGATGGaaacccccgagatacctagggtatatcccgggaattttctgagctctcaacggcttgtgttgc
	**********************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_030676
	--------------------------------------------------------------------------------------------------------------------	NM_062055
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062055
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_074739
	--------------------------------------------------------------------------------------------------------------------	NM_204717
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087841
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001097628
	--------------------------------------------------------------------------------------------------------------------	NM_174951
	--------------------------------------------------------------------------------------------------------------------	NM_061898
	--------------------------------------------------------------------------------------------------------------------	NM_061996
	--------------------------------------------------------------------------------------------------------------------	NM_062066
	--------------------------------------------------------------------------------------------------------------------	NM_062066
	--------------------------------------------------------------------------------------------------------------------	NM_061927
	--------------------------------------------------------------------------------------------------------------------	NM_061927
	--------------------------------------------------------------------------------------------------------------------	NM_061910
	--------------------------------------------------------------------------------------------------------------------	NM_061910
	--------------------------------------------------------------------------------------------------------------------	NM_061900
	--------------------------------------------------------------------------------------------------------------------	NM_061903
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001123635
	--------------------------------------------------------------------------------------------------------------------	NM_001001460
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001129182
	--------------------------------------------------------------------------------------------------------------------	NM_001129182
cbriggsae	.(((.(((((..((...(((((((((((((..((.((.((((...((((...((....)).)))).)))).)).)).))))))))).))))...))..))))))))	0.580 -32.40

cbriggsae

chromosome:chrII_random:1427927:1428032:1

Same_strand|Intronic_coding|NM_030676|Nr5a2 ## Opposite_strand|Intronic_coding|NM_062055|sri-54 ## Opposite_strand|Intronic_non-coding|NM_204717|ECE1 ## {Repeats: no}

block1893 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.808	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	33	-3	3arm_loop	1	nd	0.50	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------GUCCAUA-------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------GGTCCATACAGCTGAAAC---------------------------------	18	1
cbriggsae	gacctttatacgtcgttaataagcatgtcaaagaataaggGGTCCATACAGCTGAAACgtgaataaattaattgtaagaatgtgacaaggt
	*******************************************************************************************
	-----------------------------------------------------------------------------------------------------	NM_071218
	-----------------------------------------------------------------------------------------------------	NM_067556
	-----------------------------------------------------------------------------------------------------	NM_001083250
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001085890
	-----------------------------------------------------------------------------------------------------	NM_070819
	-----------------------------------------------------------------------------------------------------	NM_002710
cbriggsae	.(((((..((((((((((((...(((((...((..((.((...)).))...))...))))).....)))))).....)).))))..)))))	0.610 -10.60

cbriggsae

chromosome:chrIV:176429:176519:-1

Opposite_strand|Intronic_coding|NM_071218|str-253 ## Opposite_strand|Intronic_non-coding|NM_001083250|rom-4 ## Same_strand|Intronic_non-coding|NM_001085890|MGC52856 ## {Repeats: no}

block131 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.849	no	no	0.37/0.37	19/19/0.00	0.0	0.0	2	0	1	0	3	25	5arm	1	nd	0.32	3	2	1	na	na

		reads	miRBase family seed
seed	----UUUUCGA-------------------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	---GTTTTCGAATCCAAGTTGT--------------------------------------------------------------------------------------	19	2
cbriggsae	gttGTTTTCGAATCCAAGTTGTgatttcgaatcgggtgagaagttcgtagtcgcactattctctttttccttttctttatgcaccgtaggcttggcaaccgacgctgc
	************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011380
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_115678
	----------------------------------------------------------------------------------------------------------------------	NM_080788
	----------------------------------------------------------------------------------------------------------------------	NM_001024857
	----------------------------------------------------------------------------------------------------------------------	NM_001024856
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_170227
	----------------------------------------------------------------------------------------------------------------------	NM_059798
cbriggsae	.......(((...((((((((((.....(((..(((.(((((((.((....)).)))..))))....)))..)))......)))....)))))))....)))......	0.720 -21.00

cbriggsae

chromosome:chrI:6620411:6620518:-1

Same_strand|Intronic_non-coding|NM_011380|Six2 ## Same_strand|Intronic_coding|NM_115678|XIJ ## Opposite_strand|Intronic_coding|NM_080788|Ttbk2 ## {Repeats: no}

block3337 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.554	no	no	0.60/0.60	20/20/1.00	0.0	0.0	1	0	1	0	11	24	5arm	3	nd	0.30	4	1	1	na	na

		reads	miRBase family seed
seed	------------UGUCGCG---------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------TTGTCGCGGTACTGGAAGCC---------------------------------------------------------------------------------------	20	1
cbriggsae	tcaaaaggacaTTGTCGCGGTACTGGAAGCCatcaaagtaggatatcactcggggaaagcactttgagcactgatgagaaagatggtcctctccgtttggacaccggtcaagcatgaa
	**********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061817
cbriggsae	(((....(((..((((((((....((..((((((.........((((((((((((......)))))))...))))).....))))))))...))))...))))...))).....))).	0.650 -28.34

cbriggsae

chromosome:chrUn:6791533:6791650:-1

Same_strand|Intronic_non-coding|NM_061817|cct-3 ## {Repeats: no}

block1029 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.627	no	no	0.36/0.36	25/25/0.00	0.0	0.0	1	0	1	0	0	0	5arm	1	nd	0.32	4	1	1	na	na

		reads	miRBase family seed
seed	-GAAAUUG------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	GGAAATTGGTTTACATTCCATTGTC-------------------------------------	25	1
cbriggsae	GGAAATTGGTTTACATTCCATTGTCgaagaagttatgggactggaacatgttatggtgtcca
	**************************************************************
	------------------------------------------------------------------------	NM_001038232
	------------------------------------------------------------------------	NM_062121
	------------------------------------------------------------------------	NM_061791
	------------------------------------------------------------------------	NM_001038233
	------------------------------------------------------------------------	NM_061723
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001123511
	----------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<------------------	NM_064193
cbriggsae	(((.((((....((((((((..(((.............)))))))..))))..)))).))).	0.760 -10.22

cbriggsae

chromosome:chrII:11231612:11231673:1

Opposite_strand|Intronic_coding|NM_001038232|bath-20 ## Same_strand|Intronic_non-coding|NM_001123511|rab7 ## Opposite_strand|Boundary_non-coding|NM_064193|pqn-87 ## {Repeats: no}

block4004 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.876	no	no	0.50/0.50	18/18/0.00	0.0	0.0	3	0	1	0	4	12	3arm	1	nd	0.33	4	3	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------ACAAGAA--------------	3	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------GACAAGAAGAGTCCCATG----	18	3
cbriggsae	agttcagcttgaaatttgtccagatttccgggaaagttacggtattcctcgacgttGACAAGAAGAGTCCCATGacct
	******************************************************************************
	----------------------------------------------------------------------------------------	NM_007590
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_101553
	----------------------------------------------------------------------------------------	NM_067315
cbriggsae	((.(((((((....((((((..(((.((.(((((..........))))).)).)))))))))..))))....))).))	0.400 -12.70

cbriggsae

chromosome:chrV:3457329:3457406:1

Opposite_strand|Intronic_non-coding|NM_007590|Calm3 ## Same_strand|Intronic_non-coding|NM_101553|RAB11 ## Opposite_strand|Intronic_coding|NM_067315|Y39E4B.10 ## {Repeats: no}

block4623 [novel_Multihit_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.187	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	21	-2	3arm_loop	47	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------UAAUGGU----------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------GTAATGGTCAGCATGGATGCC---------------------	21	1
cbriggsae	tttccgttataatgtggagactaaacatgcccgttcgtggtGTAATGGTCAGCATGGATGCCttccaagcattcgacgggggg
	***********************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001030307
cbriggsae	((((((((..(((((((((..((..((((((((((........)))))...)))))..))..))))..))))).)))))))).	0.660 -23.40

cbriggsae

chromosome:chrX:15748128:15748210:-1

Same_strand|Intronic_non-coding|NM_001030307|Dkc1 ## {Repeats: no}

block1743 [novel_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.111	no	no	0.29/0.29	21/21/1.00	0.0	0.0	1	0	1	0	19	13	3arm	12	nd	0.43	5	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AUAUGAU--------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------TATATGATTTTTGGAACCTAG-------------------	21	1
cbriggsae	tagctaagatcaaagtgtagtatctgttcttatcgtattaacctacggtatacactcgaatgagtataataaaggtTATATGATTTTTGGAACCTAGgaaagactcggggcttgct
	********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011448
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_201507
	------------------------------------------------------------------------------------------------------------------------------	NM_111620
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001088088
	------------------------------------------------------------------------------------------------------------------------------	NM_001066926
	------------------------------------------------------------------------------------------------------------------------------	NM_004521
	------------------------------------------------------------------------------------------------------------------------------	NM_001020307
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007393
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_122291
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001128112
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067241
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001129943
	------------------------------------------------------------------------------------------------------------------------------	NM_001039838
cbriggsae	.(((.(((.((..(((.........(((((.((((((.((((((....(((((..........)))))....))))))))))))....))))).........)))..)).))))))	0.890 -24.07

cbriggsae

chromosome:chrIII:8104428:8104543:1

Same_strand|Intronic_non-coding|NM_011448|Sox9 ## Opposite_strand|Intronic_coding|NM_111620|AtRABA5b ## Opposite_strand|Intronic_non-coding|NM_004521|KIF5B ## Same_strand|Intronic_coding|NM_001128112|ci-arfgap-2 ## {Repeats: no}

block3331 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.562	no	no	0.41/0.41	22/22/1.00	0.0	0.0	1	0	1	0	0	20	5arm	1	nd	0.23	3	1	1	na	na

		reads	miRBase family seed
seed	-UUGAUCU---------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	ATTGATCTTGAGTTGGGCAACT-------------------------------------------------------------------	22	1
cbriggsae	ATTGATCTTGAGTTGGGCAACTgtgtagaaaaattctctttgaaagaacaaacgtgatgtcggtgagcagattgttgttttctgatcga
	*****************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_202770
cbriggsae	.((((((..(((...(((((((((...((...(((...((((......))))...))).)).....)))).)))))...))).))))))	0.420 -15.90

cbriggsae

chromosome:chrUn:6567613:6567701:-1

Same_strand|Intronic_coding|NM_202770|AT4G01985 ## {Repeats: no}

block628 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.013	no	no	0.58/0.62	21/24/1.00	0.0	1.5	2	0	1	0	0	7	3arm	3	nd	0.09	1	2	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------GGGUUCG----------------	2	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------TGGGTTCGAACCCCACTCGTGCTA	24	1
	------------------------------------------------------TGGGTTCGAACCCCACTCGTG---	21	1
cbriggsae	atggccgagtggttaaggcgttggacttaagttccaatggtggataacaccgcgTGGGTTCGAACCCCACTCGTGCTA
	******************************************************************************
	----------------------------------------------------------------------------------------	NM_140813
	----------------------------------------------------------------------------------------	NM_001002069
	----------------------------------------------------------------------------------------	NM_001875
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_063434
cbriggsae	.(((((((((((....((..(((((((((.((......((((.....)))))).))))))))).))))))))).))))	0.640 -29.80

cbriggsae

chromosome:chrII:4091891:4091968:-1

Opposite_strand|Intronic_non-coding|NM_140813|RpL26 ## Same_strand|Intronic_coding|NM_063434|cuticulin ## {Repeats: no}

block308 [novel_lenNOK_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.002	no	no	0.58/0.58	26/26/0.00	0.0	0.0	1	0	1	0	6	18	3arm	1	nd	0.31	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------------------------UCCUGCU------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------------------------------------GTCCTGCTGGGCGAGTGGTTGTGTTT------	26	1
cbriggsae	acttctctacactccctcgccctcccctttccacacaccaacaggagggtttatctacgtccacaacgtagttgtataaacacGTCCTGCTGGGCGAGTGGTTGTGTTTgcagtc
	*******************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020367
	-----------------------------------------------------------------------------------------------------------------------------	NM_011821
	-----------------------------------------------------------------------------------------------------------------------------	NM_001079844
	-----------------------------------------------------------------------------------------------------------------------------	NM_134696
	-----------------------------------------------------------------------------------------------------------------------------	NM_203923
	-----------------------------------------------------------------------------------------------------------------------------	NM_001086021
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001052684
	-----------------------------------------------------------------------------------------------------------------------------	NM_001062761
	-----------------------------------------------------------------------------------------------------------------------------	NM_001069064
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001006185
	-----------------------------------------------------------------------------------------------------------------------------	NM_102566
	-----------------------------------------------------------------------------------------------------------------------------	NM_113830
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001023814
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_057433
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001022024
	-----------------------------------------------------------------------------------------------------------------------------	NM_102559
	-----------------------------------------------------------------------------------------------------------------------------	NM_001019816
	-----------------------------------------------------------------------------------------------------------------------------	NM_116080
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_125613
	-----------------------------------------------------------------------------------------------------------------------------	NM_124024
cbriggsae	(((.....((((.(((((((((...................(((((..((((((((((((.....))))))....))))))...)))))..))))))).))..))))....))).	0.750 -34.80

cbriggsae

chromosome:chrI:4477287:4477401:1

Same_strand|Intronic_non-coding|NM_020367|PARP11 ## Opposite_strand|Intronic_non-coding|NM_011821|Gpc6 ## Opposite_strand|Intronic_coding|NM_134696|CG2839 ## Same_strand|Intronic_coding|NM_001006185|DDX55 ## {Repeats: no}

block3824 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.802	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	14	8	5arm	5	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	---------------UUGAGAU----------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------GTTGAGATGGTAGTTAACAGT---------------------------------------------------------	21	1
cbriggsae	ccttggctccttccGTTGAGATGGTAGTTAACAGTggattggttcacaacgtgtttattgaacactagcagggcaacagagaccccagaagg
	********************************************************************************************
	------------------------------------------------------------------------------------------------------	NM_001126434
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028773
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027854
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_074150
	------------------------------------------------------------------------------------------------------	NM_001113262
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_026039
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_175692
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_136816
	------------------------------------------------------------------------------------------------------	NM_001113262
	------------------------------------------------------------------------------------------------------	NM_001113262
cbriggsae	((((((....(((.((((...((.((((...((((((((..((.....))..))))))))...)))).))...)))).)))...)))..)))	0.950 -20.20

cbriggsae

chromosome:chrV:12020832:12020923:-1

Opposite_strand|Intronic_non-coding|NM_001126434|LOC570148 ## Same_strand|Intronic_coding|NM_001028773|F47B8.14 ## Opposite_strand|Intronic_coding|NM_001113262|Fib-h ## Same_strand|Intronic_non-coding|NM_026039|Med18 ## {Repeats: no}

block4777 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.193	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	6	23	3arm	3	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AACCAUC-------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------GAACCATCGTGTTGGGACTAC------	21	1
cbriggsae	ttggggtcatctcggcaataaaggatcctaatttgtcaatgtttttgtaaaccgcaacaagacacttaaatccagaGAACCATCGTGTTGGGACTACatccaa
	*******************************************************************************************************
cbriggsae	.((((((..((((((((.....((.((((.(((((....(((((((((.....))))..)))))..)))))..)).)).))....))))))))..)).)))).	0.750 -21.50

cbriggsae

chromosome:chrX:20227296:20227398:-1

{Repeats: no}

block2426 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.037	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	22	3	3arm	1	nd	0.21	1	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------AAGUCCG---------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------TAAGTCCGGGACATCGTTC----------------------	19	1
cbriggsae	atttcttctgtttctcgaatgtgtcgaatgaacattattgaaagaatatgcagTAAGTCCGGGACATCGTTCaagataaaataacaaagaaata
	**********************************************************************************************
	--------------------------------------------------------------------------------------------------------	NM_070351
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090906
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182271
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001102902
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_113688
cbriggsae	(((((((.(((((((.(((((((((...((.((.((((((..........)))))))).)).)))).))))).)))......))))))))))).	1.000 -19.60

cbriggsae

chromosome:chrIV:1974750:1974843:1

Opposite_strand|Intronic_non-coding|NM_070351|LLC1.2 ## Same_strand|Intronic_non-coding|NM_001090906|EEF1D ## Same_strand|Intronic_coding|NM_182271|K02E7.4 ## {Repeats: no}

block2006 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.048	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	9	24	3arm	1	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------------CCCGUUU----------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------------------TCCCGTTTATCTTTTGAGTAG---------	21	1
cbriggsae	acttgtgctaatcttaatgatgataaattcatgttataacttctgtttcatgtatttcattttttggtttcgtgaatgataaaggtaaTCCCGTTTATCTTTTGAGTAGagtagaagt
	**********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_060112
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020714
cbriggsae	((((.((((...(((((....(((((((....(((((....((...((((((....(((.....)))...)))))).)).....)))))...)))))))..)))))...)))).))))	0.830 -24.90

cbriggsae

chromosome:chrIV:2490746:2490863:-1

Same_strand|Intronic_non-coding|NM_060112|skr-1 ## {Repeats: no}

block3136 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.524	no	no	0.20/0.20	20/20/1.00	0.0	0.0	1	0	1	0	0	28	5arm	2	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	-ACUAAGA-----------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	TACTAAGATATTATTACTGA-----------------------------------------------------------------------------	20	1
cbriggsae	TACTAAGATATTATTACTGAtagaatttttagtttaatttagaatgtatcacttacaatgatagggtttaaaattctataattaagttattttttgt
	*************************************************************************************************
cbriggsae	.((.((((((...(((...((((((((((.........(((...((((.....)))).)))........))))))))))...)))..))))))..))	0.420 -11.53

cbriggsae

chromosome:chrUn:4431924:4432020:-1

{Repeats: no}

block2326 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.405	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	10	12	5arm	1	nd	0.40	4	1	1	na	na

		reads	miRBase family seed
seed	-----------CAUCGUG--------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------TCATCGTGCATGTCCCATTC--------------------------------------------------	20	1
cbriggsae	gtcaaatggcTCATCGTGCATGTCCCATTCgttacgtcgatgttcacagagatgataggatggtgtgaagaaacaggacc
	********************************************************************************
	------------------------------------------------------------------------------------------	NM_065289
	------------------------------------------------------------------------------------------	NM_064155
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061965
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_072208
	------------------------------------------------------------------------------------------	NM_075402
	------------------------------------------------------------------------------------------	NM_001026513
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067080
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214627
	------------------------------------------------------------------------------------------	NM_001094113
	------------------------------------------------------------------------------------------	NM_001091618
	------------------------------------------------------------------------------------------	NM_001034557
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_174568
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011235
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028318
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_171081
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065139
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075117
	------------------------------------------------------------------------------------------	NM_075282
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061817
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064619
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068079
	------------------------------------------------------------------------------------------	NM_072208
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075409
	------------------------------------------------------------------------------------------	NM_001028390
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028390
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067770
cbriggsae	(((...((..((.((..(((....((((((....((((..((....))..))))...))))))))))).))..)).))).	0.930 -18.70

cbriggsae

chromosome:chrIV:14273219:14273298:-1

Opposite_strand|Intronic_non-coding|NM_065289|Y53G8AR.9 ## Same_strand|Intronic_non-coding|NM_061965|F08D12.1 ## Same_strand|Intronic_coding|NM_072208|K12B6.7 ## Opposite_strand|Intronic_coding|NM_072208|K12B6.7 ## {Repeats: no}

block5240 [novel_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.249	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	4	22	3arm	49	nd	0.30	2	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------CGUUCGU----------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------------------GCGTTCGTGGTGTAATGGTC----	20	1
cbriggsae	gcagattacaaagcctcacgaaacacgattcatttatgtttatggacgtgcctgatagacttgtgcGCGTTCGTGGTGTAATGGTCagca
	******************************************************************************************
	----------------------------------------------------------------------------------------------------	NM_001031326
	----------------------------------------------------------------------------------------------------	NM_077935
cbriggsae	((.(((((....((.(((((((.(((((.(((..((((((....))))))..))).....)))))....))))))).))..))))).)).	0.420 -21.80

cbriggsae

chromosome:chrX:19751804:19751893:1

Opposite_strand|Intronic_non-coding|NM_001031326|CLK2 ## Opposite_strand|Intronic_coding|NM_077935|C31E10.8 ## {Repeats: no}

block2905 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.672	no	no	0.43/0.43	21/21/1.00	0.0	0.0	2	0	1	0	28	6	5arm	2	nd	0.33	3	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------UCGUCGC----------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	----------------------------TTCGTCGCTTCATATGTATGG---------------------------------------------------------------------	21	2
cbriggsae	tttaattttctgtgaattctgattttgaTTCGTCGCTTCATATGTATGGcaattttcaaaaaatgattacaatgaagttacacctttttcgaatttcaacctttttgctgccattgga
	**********************************************************************************************************************
cbriggsae	((((((.....(((((...(((.(((((...((.(((((((.((((...((.(((....))).))..))))))))))).)).......)))))..))).....)))))....))))))	0.590 -15.10

cbriggsae

chromosome:chrIV_random:491579:491696:1

{Repeats: no}

block2082 [novel_lenNOK_cloningOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.235	no	no	0.42/0.42	19/19/0.00	0.0	0.0	6	0	1	0	24	7	5arm	1	nd	0.16	1	6	1	na	na

		reads	miRBase family seed
seed	-------------------------AUGUGGC--------------------------------------------------------------------	6	novel
		len	cloning frequencies
			AF16
	------------------------TATGTGGCGAAAGTTAGTG---------------------------------------------------------	19	6
cbriggsae	cgtagattttattcacaattttgtTATGTGGCGAAAGTTAGTGaatgtcactctatactgctgttcataactttgttcatgactttgctcaaactttgct
	****************************************************************************************************
	--------------------------------------------------------------------------------------------------------------	NM_069173
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047598
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047599
cbriggsae	.(((((.(((.....(((....((((((.(((.((((((.((((((..((........))..))))))))))))))))))))).)))...))).))))).	0.760 -17.80

cbriggsae

chromosome:chrIV:4034758:4034857:-1

Opposite_strand|Intronic_coding|NM_069173|Y73F4A.1 ## Same_strand|Intronic_coding|NM_001047598|nhr-11 ## {Repeats: no}

block2001 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.027	no	no	0.35/0.37	19/20/0.50	0.5	0.0	2	0	1	0	4	22	5arm	1	nd	0.35	3	2	1	na	na

		reads	miRBase family seed
seed	------CAUUGUC---------------------------------------------------------------------------------------	1	novel
seed	-----UCAUUGU----------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----TTCATTGTCCTAGGTATTTG----------------------------------------------------------------------------	20	1
	-----TCATTGTCCTAGGTATTTG----------------------------------------------------------------------------	19	1
cbriggsae	attaTTCATTGTCCTAGGTATTTGattggtccgatctctttttttaattttcctaaaaaaagtgttctgtttcccacagttggtaataggatttgagtga
	****************************************************************************************************
cbriggsae	.(((((((..((((((..((((....(((...((...(((((((((.......)))))))))...))......))).....)))).)))))).)))))))	0.540 -20.10

cbriggsae

chromosome:chrIV:2418944:2419043:-1

{Repeats: no}

block2672 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.280	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	13	10	5arm	2	nd	0.33	4	1	1	na	na

		reads	miRBase family seed
seed	--------------CCAUAUC----------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------TCCATATCCTGCCAGGTTTTG---------------------------------------------------------------------------	21	1
cbriggsae	tactcgttctcagTCCATATCCTGCCAGGTTTTGaaaagatcaagaaaattttattgtcctcattttcaaagtgtggtttttcattgtgttctctcatgcagtatgagt
	*************************************************************************************************************
	-----------------------------------------------------------------------------------------------------------------------	NM_068322
	-----------------------------------------------------------------------------------------------------------------------	NM_066961
	-----------------------------------------------------------------------------------------------------------------------	NM_001001344
cbriggsae	.((((((.((.((..((((....((((..(((((((((((.(((..........)))...)).)))))))))..)))).......))))..)).......)).))))))	0.520 -19.10

cbriggsae

chromosome:chrIV:8910266:8910374:1

Opposite_strand|Intronic_coding|NM_068322|C02B10.3 ## Opposite_strand|Intronic_non-coding|NM_066961|W09D10.4 ## {Repeats: no}

block4370 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.566	no	no	0.71/0.71	21/21/1.00	0.0	0.0	1	0	1	0	13	1	5arm	6	nd	0.33	4	1	1	na	na

		reads	miRBase family seed
seed	--------------GCUAUCC--------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------GGCTATCCGCGACAGCCAGCC-------------------------------------------------------	21	1
cbriggsae	cgccgcctaccctGGCTATCCGCGACAGCCAGCCggcccaaaaacggtggaaaacgacgacgatgatatagggtccccctagcgagcgg
	*****************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_212435
	---------------------------------------------------------------------------------------------------	NM_007496
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_210388
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_172592
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_079847
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_170474
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_053242
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027784
	---------------------------------------------------------------------------------------------------	NM_181874
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001040230
	---------------------------------------------------------------------------------------------------	NM_000844
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122952
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122953
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010905
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_077242
cbriggsae	((((((..((((((..((((((((....(((.(((.........))))))....)).))..))))...)))))).......))).))).	0.680 -26.50

cbriggsae

chromosome:chrX:3350503:3350591:-1

Same_strand|Intronic_non-coding|NM_212435|Foxp2 ## Opposite_strand|Intronic_non-coding|NM_007496|Zfhx3 ## Same_strand|Intronic_coding|NM_210388|AGOS_AER177W ## Opposite_strand|Intronic_coding|NM_181874|GRM7 ## {Repeats: no}

block1020 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.600	no	no	0.58/0.58	19/19/0.00	0.0	0.0	1	0	1	0	0	24	5arm	1	nd	0.11	2	1	1	na	na

		reads	miRBase family seed
seed	-GCCGGGG----------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	TGCCGGGGATGAGCAATTG-----------------------------------------------------------------	19	1
cbriggsae	TGCCGGGGATGAGCAATTGagcatatcactgactgttggtgaggtgactacatttctgaggcttttgtaatttcattatttggt
	************************************************************************************
	----------------------------------------------------------------------------------------------	NM_001087019
	----------------------------------------------------------------------------------------------	NM_001018915
	----------------------------------------------------------------------------------------------	NM_001854
	----------------------------------------------------------------------------------------------	NM_131292
	----------------------------------------------------------------------------------------------	NM_183186
	----------------------------------------------------------------------------------------------	NM_080629
	----------------------------------------------------------------------------------------------	NM_032085
	----------------------------------------------------------------------------------------------	NM_001113224
	----------------------------------------------------------------------------------------------	NM_080630
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001123511
	----------------------------------------------------------------------------------------------	NM_001001135
cbriggsae	.(((((((((((((((..((((...(((..((.....((((((....)).))))))))).))))))))....))))).))))))	0.640 -17.30

cbriggsae

chromosome:chrII:10967253:10967336:1

Opposite_strand|Intronic_non-coding|NM_001087019|nr2f2 ## Opposite_strand|Intronic_coding|NM_001018915|exo2 ## Same_strand|Intronic_non-coding|NM_001123511|rab7 ## {Repeats: no}

block3957 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.540	no	no	0.65/0.65	20/20/1.00	0.0	0.0	1	0	1	0	11	-4	3arm_loop	1	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------AGCGCCG-----------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------GAGCGCCGGGATTCTACGCA-----------	20	1
cbriggsae	actctggatccttcaagtcacgatagtattcggtGAGCGCCGGGATTCTACGCAggagacggcag
	*****************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001106714
	---------------------------------------------------------------------------	NM_001028857
	---------------------------------------------------------------------------	NM_001028858
	---------------------------------------------------------------------------	NM_001062304
	---------------------------------------------------------------------------	NM_029761
	---------------------------------------------------------<<<<<<<<<<<<<<<<<<	NM_072808
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_072806
cbriggsae	.(((((..((((........((.(((..((((((....))))))...))))).))))..))).))	0.530 -15.20

cbriggsae

chromosome:chrV:1206963:1207027:1

Same_strand|Intronic_non-coding|NM_001106714|Slc7a15 ## Opposite_strand|Intronic_non-coding|NM_001028857|K04F1.14 ## Opposite_strand|Intronic_coding|NM_001028858|K04F1.14 ## Opposite_strand|Boundary_coding|NM_072808|F25G6.9 ## {Repeats: no}

block3273 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.541	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	27	6	5arm	1	nd	0.24	2	1	1	na	na

		reads	miRBase family seed
seed	----------------------------UUCUUCG--------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------GTTCTTCGCAAGTCCAAATGT-------------------------------------------------------------	21	1
cbriggsae	tagaactgcatcgtgacgagctgtgatGTTCTTCGCAAGTCCAAATGTgcagctttgaagtatgtgccattggctttcggacgggtatccacatcttcggcaggctttg
	*************************************************************************************************************
cbriggsae	.....((((....(((.((..((.(((..((((((.(((.((((..((((((((....))).)))))..))))))).)))).))..)))))..)).)))))))......	0.820 -26.50

cbriggsae

chromosome:chrUn:5195081:5195189:-1

{Repeats: no}

block4329 [novel_cloningOK_Multihit_shortStem_5varHIGH_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.136	no	no	0.50/0.63	20/27/0.93	4.8	4.1	10	0	1	0	0	-8	3arm	20	nd	0.37	3	14	1	na	na

		reads	miRBase family seed
seed	-----------------------------------CCUUAGG----------------------------	7	novel
seed	---------------------------------------------------CGAAUCC------------	3	novel
seed	------------------------------------------------GUUCGAA---------------	1	novel
seed	-------------------------------------------CGCUGGU--------------------	1	novel
seed	--------------------------------------UAGGUCG-------------------------	1	novel
seed	---------------------------------------AGGUCGC------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------TCCTTAGGTCGCTGGTTCGAATC-------------	23	5
	--------------------------------------------------TCGAATCCGGCTCGACGGAA	20	3
	----------------------------------TCCTTAGGTCGCTGGTTCGAAT--------------	22	2
	-------------------------------------TTAGGTCGCTGGTTCGAATCCG-----------	22	1
	-----------------------------------------------GGTTCGAATCCGGCTCGACGGAA	23	1
	------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA-	27	1
	--------------------------------------TAGGTCGCTGGTTCGAATCCG-----------	21	1
cbriggsae	ttggtagagcggaggactgtagagtcagtggttaTCCTTAGGTCGCTGGTTCGAATCCGGCTCGACGGAA
	**********************************************************************
	--------------------------------------------------------------------------------	NM_001095669
	--------------------------------------------------------------------------------	NM_001047906
	--------------------------------------------------------------------------------	NM_001047906
	--------------------------------------------------------------------------------	NM_033381
	--------------------------------------------------------------------------------	NM_001844
	--------------------------------------------------------------------------------	NM_007734
	--------------------------------------------------------------------------------	NM_033380
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122840
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033150
	--------------------------------------------------------------------------------	NM_009930
	--------------------------------------------------------------------------------	NM_032085
	--------------------------------------------------------------------------------	NM_001076831
	--------------------------------------------------------------------------------	NM_053304
	--------------------------------------------------------------------------------	NM_012929
	--------------------------------------------------------------------------------	NM_000090
	--------------------------------------------------------------------------------	NM_131292
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090075
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214509
	--------------------------------------------------------------------------------	NM_001081764
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001031818
	--------------------------------------------------------------------------------	NM_152660
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007734
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000090
	--------------------------------------------------------------------------------	NM_009930
	--------------------------------------------------------------------------------	NM_000495
cbriggsae	((.((.((((...(((.....((..((((((...........))))))..))...))).)))).)).)).	0.990 -20.70

cbriggsae

chromosome:chrX:861858:861927:-1

Opposite_strand|Intronic_coding|NM_001095669|foxp2a ## Same_strand|Intronic_coding|NM_001122840|si:ch211-212m21.5 ## Opposite_strand|Intronic_non-coding|NM_152660|FAM76A ## {Repeats: no}

block3265 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.757	no	no	0.48/0.48	21/21/1.00	0.0	0.0	2	0	1	0	9	13	5arm	7	nd	0.29	4	2	1	na	na

		reads	miRBase family seed
seed	----------CUUACGA------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	---------GCTTACGACCATATCACGTTG-----------------------------------------------------------------	21	2
cbriggsae	gagaaaaatGCTTACGACCATATCACGTTGaatgcacgccatcccgtccgatctggcaagttaagcaacgttgagtccagttagtacttggatcg
	***********************************************************************************************
cbriggsae	((...((.((((.(((((((....((((((...((..((((((......))..))))..))....)))))))).)))..)).)))).))...)).	0.690 -18.90

cbriggsae

chromosome:chrUn:5165593:5165687:-1

{Repeats: no}

block2185 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.659	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	30	-3	3arm_loop	1	nd	0.33	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------UCGGCCA-------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------TTCGGCCAAGGAATCAATATG------------------------------	21	1
cbriggsae	cagtttccagaagtccttatcttgtgatcatatttcttgtcagtgtTTCGGCCAAGGAATCAATATGattaaaaatattttttaacgtttgcatact
	*************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066961
cbriggsae	.(((...((((.((..........(((((((((((((((((........))).)))))....))))))))).............)).))))...)))	0.790 -12.80

cbriggsae

chromosome:chrIV:8522779:8522875:-1

Same_strand|Intronic_non-coding|NM_066961|W09D10.4 ## {Repeats: no}

block4061 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.048	no	no	0.45/0.45	20/20/1.00	0.0	0.0	1	0	1	0	7	0	5arm	5	nd	0.30	3	1	1	na	na

		reads	miRBase family seed
seed	--------CGCAAUU-----------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------ACGCAATTTTTGAACGCCTC-----------------------------	20	1
cbriggsae	gtgacatACGCAATTTTTGAACGCCTCtaggaggcagcagaacttgtatttaaaac
	********************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007734
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122952
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122953
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010905
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000092
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_078262
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009930
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031365
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000091
	------------------------------------------------------------------	NM_000945
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_053304
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031362
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199214
	------------------------------------------------------------------	NM_177732
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_204790
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001081764
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087789
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087791
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_203889
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083388
	------------------------------------------------------------------	NM_001094292
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_012929
	------------------------------------------------------------------	NM_153093
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001085355
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064188
cbriggsae	.........((((.(((((...(((((...)))))..))))).)))).........	0.980 -13.50

cbriggsae

chromosome:chrV:6963723:6963778:1

Same_strand|Intronic_coding|NM_007734|Col4a3 ## Same_strand|Intronic_non-coding|NM_001122952|Nfia ## Opposite_strand|Intronic_non-coding|NM_000945|PPP3R1 ## {Repeats: no}

block2699 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.415	no	no	0.59/0.59	22/22/1.00	0.0	0.0	1	0	1	0	1	26	5arm	4	nd	0.32	4	1	1	na	na

		reads	miRBase family seed
seed	--GCUAUGA------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-GGCTATGAAGATGCGCTCGAGG----------------------------------------------------------------------------------	22	1
cbriggsae	tGGCTATGAAGATGCGCTCGAGGtgtgggactgacttttttcgagaattcaaaacaatttttgtgtatggaggatgggccaatgacgtgcgcttttcacaaagtt
	*********************************************************************************************************
	-------------------------------------------------------------------------------------------------------------------	NM_001090075
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001069271
	-------------------------------------------------------------------------------------------------------------------	NM_001090673
	-------------------------------------------------------------------------------------------------------------------	NM_062819
	-------------------------------------------------------------------------------------------------------------------	NM_001107085
	-------------------------------------------------------------------------------------------------------------------	NM_001004090
cbriggsae	.((((.((((((.((((.((.....(((..(((.(((((..((((((((......)))))))).....))))).))).)))....)).))))))))))...))))	1.000 -24.70

cbriggsae

chromosome:chrIV:9451281:9451385:1

Opposite_strand|Intronic_coding|NM_001090075|MGC69046 ## Same_strand|Intronic_coding|NM_001069271|Os09g0271100 ## Opposite_strand|Intronic_non-coding|NM_062819|fbf-2 ## {Repeats: no}

block1561 [novel_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.461	no	no	0.55/0.55	22/22/1.00	0.0	0.0	1	0	1	0	2	17	5arm	15	nd	0.23	3	1	1	na	na

		reads	miRBase family seed
seed	---UUUCGAG----------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--GTTTCGAGTGTGTGTGCGCCTT--------------------------------------------------	22	1
cbriggsae	ccGTTTCGAGTGTGTGTGCGCCTTtaaccccttcgtggcgagacctcaacgatagggcgcgcttgcacgaaggg
	**************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_124925
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_184109
	------------------------------------------------------------------------------------	NM_013720
	------------------------------------------------------------------------------------	NM_001085471
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031809
	------------------------------------------------------------------------------------	NM_177595
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031808
	------------------------------------------------------------------------------------	NM_204577
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001102968
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061965
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075282
	------------------------------------------------------------------------------------	NM_001122952
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001108816
	------------------------------------------------------------------------------------	NM_005197
	------------------------------------------------------------------------------------	NM_010905
	------------------------------------------------------------------------------------	NM_001122953
	------------------------------------------------------------------------------------	NM_067174
cbriggsae	((.(((...(((((.(((((((((........((((...((....)).)))).))))))))).)))))))).))	0.470 -24.60

cbriggsae

chromosome:chrIII:12648685:12648758:-1

Same_strand|Intronic_coding|NM_124925|AT5G55430 ## Opposite_strand|Intronic_non-coding|NM_013720|Mga ## Same_strand|Intronic_non-coding|NM_031808|Capn6 ## {Repeats: no}

block637 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.168	no	no	0.47/0.47	19/19/0.00	0.0	0.0	1	0	1	0	16	13	5arm	1	nd	0.53	5	1	1	na	na

		reads	miRBase family seed
seed	-----------------GAAAAGU------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------GGAAAAGTTGGACGCTAAG-------------------------------------------------------------	19	1
cbriggsae	caagaaggcaatttttGGAAAAGTTGGACGCTAAGaatcaaatttttcataaaatcgaaaaatgcgtcaactgtcggaacacagaatagcttgttg
	************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_006287
cbriggsae	(((..((((.(((((((....((((.(((((..........(((((((........)))))))))))))))).......)).))))).)))).)))	0.790 -17.70

cbriggsae

chromosome:chrII:4541038:4541133:-1

Same_strand|Intronic_non-coding|NM_006287|TFPI ## {Repeats: no}

sblock65 [novel_multiarm_DicerNOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.014	no	no	0.43/0.48	21/23/1.00	0.0 0.0	0.0 0.0	1 1	0 0	1 1	0 0	15 8	10 9	5arm 3arm	1 1	nd nd	0.38 0.26	4 4	2	1	-1	3

		reads	miRBase family seed
seed	--------------------------------------------------------------GGUUUGC-----------------------	1	novel
seed	----------------GUCUUUG---------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------TGTCTTTGACCATTTGATCCC--------------------------------------------------------	21	1
	-------------------------------------------------------------TGGTTTGCACATGGTCCACACTT--------	23	1
cbriggsae	gccttgggaaagcatTGTCTTTGACCATTTGATCCCactctcgctactcaattggtgattgTGGTTTGCACATGGTCCACACTTttttagcc
	********************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011764
cbriggsae	((..((((((((...(((....((((((.((...((((..((((((......))))))..))))....)).)))))).))))))))))))).	0.990 -25.50

cbriggsae

chromosome:chrV:15940267:15940358:1

Same_strand|Intronic_non-coding|NM_011764|Zfp90 ## {Repeats: no}

block1717 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.139	no	no	0.42/0.42	26/26/0.00	0.0	0.0	1	0	1	0	15	16	3arm	1	nd	0.15	1	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------------------UUCGAAG---------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------------------------------GTTCGAAGAGTTTCAACAGAAGACGT---------------	26	1
cbriggsae	atcaaactcaccgaactctcagttgctgaagctcgtcgaaatccattcgaggtccgtaattgaattggttggtcatcGTTCGAAGAGTTTCAACAGAAGACGTtttttgaagctgatc
	**********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087791
	--------------------------------------------------------------------------------------------------------------------------------	NM_001047975
	--------------------------------------------------------------------------------------------------------------------------------	NM_001858
	--------------------------------------------------------------------------------------------------------------------------------	NM_213264
	--------------------------------------------------------------------------------------------------------------------------------	NM_131292
	--------------------------------------------------------------------------------------------------------------------------------	NM_080680
	--------------------------------------------------------------------------------------------------------------------------------	NM_001845
	--------------------------------------------------------------------------------------------------------------------------------	NM_021881
	--------------------------------------------------------------------------------------------------------------------------------	NM_007739
	--------------------------------------------------------------------------------------------------------------------------------	NM_181277
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083336
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_176995
	--------------------------------------------------------------------------------------------------------------------------------	NM_001006951
	--------------------------------------------------------------------------------------------------------------------------------	NM_001081764
	--------------------------------------------------------------------------------------------------------------------------------	NM_001046199
	--------------------------------------------------------------------------------------------------------------------------------	NM_001005153
	--------------------------------------------------------------------------------------------------------------------------------	NM_001002980
	--------------------------------------------------------------------------------------------------------------------------------	NM_001014971
	--------------------------------------------------------------------------------------------------------------------------------	NM_204790
	--------------------------------------------------------------------------------------------------------------------------------	NM_001082666
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_079524
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_206442
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_206443
	--------------------------------------------------------------------------------------------------------------------------------	NM_212528
	--------------------------------------------------------------------------------------------------------------------------------	NM_201478
	--------------------------------------------------------------------------------------------------------------------------------	NM_182968
	--------------------------------------------------------------------------------------------------------------------------------	NM_033150
	--------------------------------------------------------------------------------------------------------------------------------	NM_080629
	--------------------------------------------------------------------------------------------------------------------------------	NM_000089
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_005381
	--------------------------------------------------------------------------------------------------------------------------------	NM_001107100
	--------------------------------------------------------------------------------------------------------------------------------	NM_000393
	--------------------------------------------------------------------------------------------------------------------------------	NM_080681
	--------------------------------------------------------------------------------------------------------------------------------	NM_005718
	--------------------------------------------------------------------------------------------------------------------------------	NM_004845
	--------------------------------------------------------------------------------------------------------------------------------	NM_080680
	--------------------------------------------------------------------------------------------------------------------------------	NM_001844
	--------------------------------------------------------------------------------------------------------------------------------	NM_080679
	--------------------------------------------------------------------------------------------------------------------------------	NM_001854
	--------------------------------------------------------------------------------------------------------------------------------	NM_212579
	--------------------------------------------------------------------------------------------------------------------------------	NM_080630
	--------------------------------------------------------------------------------------------------------------------------------	NM_007736
	--------------------------------------------------------------------------------------------------------------------------------	NM_001083844
	--------------------------------------------------------------------------------------------------------------------------------	NM_007738
	--------------------------------------------------------------------------------------------------------------------------------	NM_031366
	--------------------------------------------------------------------------------------------------------------------------------	NM_199214
	--------------------------------------------------------------------------------------------------------------------------------	NM_009926
	--------------------------------------------------------------------------------------------------------------------------------	NM_031362
	--------------------------------------------------------------------------------------------------------------------------------	NM_031365
	--------------------------------------------------------------------------------------------------------------------------------	NM_134452
	--------------------------------------------------------------------------------------------------------------------------------	NM_000092
	--------------------------------------------------------------------------------------------------------------------------------	NM_000091
	--------------------------------------------------------------------------------------------------------------------------------	NM_001024960
	--------------------------------------------------------------------------------------------------------------------------------	NM_001024959
	--------------------------------------------------------------------------------------------------------------------------------	NM_078485
	--------------------------------------------------------------------------------------------------------------------------------	NM_001851
	--------------------------------------------------------------------------------------------------------------------------------	NM_001079992
	--------------------------------------------------------------------------------------------------------------------------------	NM_001130548
cbriggsae	((((...(((..(((((((...(((.((((((((.(((((..(((..(((..((.......)).)))..)))......))))).)))))))).))).))).))))..)))...)))).	0.930 -29.80

cbriggsae

chromosome:chrIII:6677084:6677201:1

Same_strand|Intronic_coding|NM_001087791|col2a1b ## Opposite_strand|Intronic_coding|NM_001047975|LOC683871 ## Opposite_strand|Intronic_non-coding|NM_213264|col9a1 ## Same_strand|Intronic_non-coding|NM_176995|C230078M08Rik ## {Repeats: no}

block3310 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.701	no	no	0.55/0.55	22/22/1.00	0.0	0.0	1	0	1	0	1	16	5arm	2	nd	0.27	2	1	1	na	na

		reads	miRBase family seed
seed	--AUUUCGG-----------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-GATTTCGGTGAGCTCCGTTTGG---------------------------------------------------------------------	22	1
cbriggsae	tGATTTCGGTGAGCTCCGTTTGGtacattgcggcatttctcttgaattctgtggcacgcaaaattgactgtagatcgttgctgattgcaatt
	********************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071086
cbriggsae	.((((.((((.(((..((..((((.(((((((((..(((....))).......)).)))))...)))))).....))..))).)))).))))	0.400 -18.50

cbriggsae

chromosome:chrUn:6257339:6257430:-1

Same_strand|Intronic_coding|NM_071086|srw-99 ## {Repeats: no}

block776 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.029	no	no	0.11/0.11	18/18/0.00	0.0	0.0	1	0	1	0	35	7	5arm	1	nd	0.50	4	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------AUUUUUC---------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------GATTTTTCATTATTTTTT-----------------------------------------------------------------	18	1
cbriggsae	agatcttttggtttttctgaattttcatactttctGATTTTTCATTATTTTTTtgatgttcctgaacatctgaatatccgagttctggttttttgaactttttgattttcctgatttt
	**********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001038232
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062121
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061791
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001854
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_131292
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_032085
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001038233
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001113224
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061723
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080630
	--------------------------------------------------------------------------------------------------------------------------------	NM_001123511
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001001135
cbriggsae	(((((....((....((.(((..((((.....((.((...(((..(((((....((((((....)))))).)))))...))).)).)).....))))..))).))....)).))))).	0.600 -17.60

cbriggsae

chromosome:chrII:11193292:11193409:-1

Same_strand|Intronic_coding|NM_001038232|bath-20 ## Opposite_strand|Intronic_non-coding|NM_001123511|rab7 ## {Repeats: no}

block269 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.024	no	no	0.64/0.64	25/25/0.00	0.0	0.0	4	0	1	0	19	5	5arm	1	nd	0.24	2	4	1	na	na

		reads	miRBase family seed
seed	--------------------UACGCCA--------------------------------------------------------------------------------	4	novel
		len	cloning frequencies
			AF16
	-------------------GTACGCCAACGTCGACGGAACTCGG---------------------------------------------------------------	25	4
cbriggsae	aaaaattgacactttgttcGTACGCCAACGTCGACGGAACTCGGagagcattgcgacattccaggtttcgttgattgcctgaaagtatggaaatttaatgcaatttt
	***********************************************************************************************************
	---------------------------------------------------------------------------------------------------------------------	NM_057259
	---------------------------------------------------------------------------------------------------------------------	NM_008855
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061553
	---------------------------------------------------------------------------------------------------------------------	NM_068079
cbriggsae	.(((((((........(((((((..((..(((((((((((..((((.((...))....))))..)))))))))))....))...))))))).........)))))))	1.000 -29.33

cbriggsae

chromosome:chrI:1652966:1653072:1

Opposite_strand|Intronic_non-coding|NM_057259|l(2)37Cc ## Same_strand|Intronic_non-coding|NM_061553|C13A10.1 ## {Repeats: no}

block3945 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.429	no	no	0.56/0.56	18/18/0.00	0.0	0.0	1	0	1	0	4	12	3arm	1	nd	0.11	1	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------------CUGUGGA--------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------------------------TCTGTGGAGTCCTTGCTG----	18	1
cbriggsae	gttgtcgttgtgggacctttgaccacttccacagctccgatttttcatagcaaaattatatgctcacctcgtTCTGTGGAGTCCTTGCTGccgc
	**********************************************************************************************
	--------------------------------------------------------------------------------------------------------	NM_001847
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028815
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_170227
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001012945
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001114052
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001130158
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_012223
cbriggsae	((.((.((...(((((...........(((((((...(((........((((........))))....)))..)))))))))))).)).)).))	0.400 -20.00

cbriggsae

chromosome:chrV:570978:571071:1

Opposite_strand|Intronic_coding|NM_001847|COL4A6 ## Same_strand|Intronic_coding|NM_001028815|F56H9.6 ## Same_strand|Intronic_non-coding|NM_001012945|DNAJA1 ## {Repeats: no}

block1674 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.024	no	no	0.50/0.50	22/22/1.00	0.0	0.0	1	0	1	0	29	-1	5arm_loop	1	nd	0.32	4	1	1	na	na

		reads	miRBase family seed
seed	------------------------------UCAAACU-------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------GTCAAACTGCCCGAGCATGATT-----------------------------------------------------------	22	1
cbriggsae	gagtatcctaatcagtcgaaaacgacaccGTCAAACTGCCCGAGCATGATTccagtctactgtgcttaccaggttttcacaatgttggttttgacagattaaatatattt
	**************************************************************************************************************
	------------------------------------------------------------------------------------------------------------------------	NM_134696
	------------------------------------------------------------------------------------------------------------------------	NM_068799
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080378
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_175389
	------------------------------------------------------------------------------------------------------------------------	NM_104789
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_006914
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_202770
cbriggsae	((((((..(((((.(((((((.(((((..((.(((((....(((((((((....)))....))))))....)))))..))..))))).))))))).)))))...))))))	1.000 -26.30

cbriggsae

chromosome:chrIII:4582121:4582230:1

Opposite_strand|Intronic_coding|NM_134696|CG2839 ## Opposite_strand|Intronic_non-coding|NM_068799|rod-1 ## Same_strand|Intronic_non-coding|NM_080378|Mgat1 ## Same_strand|Intronic_coding|NM_202770|AT4G01985 ## {Repeats: no}

sblock33 [novel_multiarm_DicerNOK_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.098	no	no	0.52/0.54	23/24/1.00	0.0 0.0	0.0 0.0	1 2	0 0	1 1	0 0	4 0	4 15	5arm 3arm	1 1	nd nd	0.21 0.41	4 4	3	1	12	4

		reads	miRBase family seed
seed	-------------------------------------------------------AUGGGGG---------------	2	novel
seed	-----UCGUCCU-----------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------GATGGGGGATCCGACCAAGTATT	23	2
	----GTCGTCCTGGTCGTTCACATTGGT-------------------------------------------------	24	1
cbriggsae	cttcGTCGTCCTGGTCGTTCACATTGGTaacgagagaagcggcgtgcagtgaatGATGGGGGATCCGACCAAGTATT
	*****************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028998
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028999
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029004
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029003
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029002
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029001
	---------------------------------------------------------------------------------------	NM_064155
	---------------------------------------------------------------------------------------	NM_001122952
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_028763
	---------------------------------------------------------------------------------------	NM_065922
	---------------------------------------------------------------------------------------	NM_010905
	---------------------------------------------------------------------------------------	NM_065923
	---------------------------------------------------------------------------------------	NM_068002
	---------------------------------------------------------------------------------------	NM_065190
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067159
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_175692
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001093474
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061965
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061817
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075459
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067160
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067659
cbriggsae	(((.((((((((.(((((((((....(((.((.......))...))).))))))))).))))...)))).)))....	0.560 -25.20

cbriggsae

chromosome:chrIII:11329207:11329283:-1

Same_strand|Intronic_non-coding|NM_001028998|unc-62 ## Opposite_strand|Intronic_non-coding|NM_064155|Y17G7B.3 ## Opposite_strand|Intronic_coding|NM_065922|C05D10.4 ## Same_strand|Intronic_coding|NM_067659|Y104H12BL.1 ## {Repeats: no}

block2054 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.889	no	no	0.30/0.30	20/20/1.00	0.0	0.0	2	0	1	0	4	24	3arm	1	nd	0.30	3	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------------------UUAAUCG----------------	2	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------------------------TTTAATCGAGATGTAATGTG----	20	2
cbriggsae	ttgtattgaatttttttcgaaattaaaaaaaaaccatttcataaatctctgcttcattcagtatttaattgttgggaatttcaatttgttttagTTTAATCGAGATGTAATGTGacaa
	**********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105717
	--------------------------------------------------------------------------------------------------------------------------------	NM_198022
	--------------------------------------------------------------------------------------------------------------------------------	NM_112886
	--------------------------------------------------------------------------------------------------------------------------------	NM_020066
	--------------------------------------------------------------------------------------------------------------------------------	NM_069344
cbriggsae	.(((.....(((..((((((..(((((..(((((........((.((((.((..................)).)))).)).......)))))..)))))))))))...)))...))).	0.550 -12.73

cbriggsae

chromosome:chrIV:3348362:3348479:-1

Same_strand|Intronic_non-coding|NM_001105717|Dpysl2 ## Opposite_strand|Intronic_non-coding|NM_198022|Tnrc6c ## Opposite_strand|Intronic_coding|NM_020066|FMN2 ## {Repeats: no}

block4559 [novel_Multihit_shortStem_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.041	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	2	-3	3arm_loop	47	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	----------------------UAAUGGU---------------	1	novel
		len	cloning frequencies
			AF16
	---------------------GTAATGGTCAGCATGGATGCC--	21	1
cbriggsae	aagacatccagcgttcgtggtGTAATGGTCAGCATGGATGCCtt
	********************************************
	------------------------------------------------------	NM_001108848
	------------------------------------------------------	NM_133381
	++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001045626
	------------------------------------------------------	NM_004845
	++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001086847
	------------------------------------------------------	NM_001065160
	++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001082087
	++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001017762
cbriggsae	(((.((((((((..((((......))))...)).)))))).)))	1.000 -13.90

cbriggsae

chromosome:chrX:13287402:13287445:-1

Opposite_strand|Intronic_non-coding|NM_001108848|Elavl1 ## Same_strand|Intronic_coding|NM_001045626|galntl1 ## Same_strand|Intronic_non-coding|NM_001086847|MGC53595 ## Opposite_strand|Intronic_coding|NM_001065160|Os06g0725900 ## {Repeats: no}

block2314 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.254	no	no	0.50/0.57	21/23/1.00	0.0	0.3	7	0	1	0	5	-8	3arm_loop	20	nd	0.52	7	9	1	na	na

		reads	miRBase family seed
seed	---------------------------CCUUAGG--------------------	7	novel
seed	-------------------------------AGGUCGC----------------	1	novel
seed	------------------------------UAGGUCG-----------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------TCCTTAGGTCGCTGGTTCGAATC-----	23	5
	--------------------------TCCTTAGGTCGCTGGTTCGAAT------	22	2
	-----------------------------TTAGGTCGCTGGTTCGAATCCG---	22	1
	------------------------------TAGGTCGCTGGTTCGAATCCG---	21	1
cbriggsae	gcggaggactgtagagtcagtgggtaTCCTTAGGTCGCTGGTTCGAATCcgacg
	******************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064152
	----------------------------------------------------------------	NM_067049
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047648
	----------------------------------------------------------------	NM_065151
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075282
	----------------------------------------------------------------	NM_001106865
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_072208
	----------------------------------------------------------------	NM_075402
	----------------------------------------------------------------	NM_075402
	----------------------------------------------------------------	NM_065139
	----------------------------------------------------------------	NM_171091
	----------------------------------------------------------------	NM_067241
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067285
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068002
	----------------------------------------------------------------	NM_067755
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067672
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064726
	----------------------------------------------------------------	NM_182297
	----------------------------------------------------------------	NM_067597
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001844
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000090
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001113224
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_201478
	----------------------------------------------------------------	NM_067080
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033150
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031163
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027705
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_012929
	----------------------------------------------------------------	NM_131595
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001081764
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090075
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205107
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087258
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001081764
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_198022
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001113224
	----------------------------------------------------------------	NM_059821
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_131292
	----------------------------------------------------------------	NM_075282
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068122
	----------------------------------------------------------------	NM_032085
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_027770
	----------------------------------------------------------------	NM_065139
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_181277
	----------------------------------------------------------------	NM_067594
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001113515
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001001135
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001001135
	----------------------------------------------------------------	NM_001031625
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001130548
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007742
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083844
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001100911
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_131292
	----------------------------------------------------------------	NM_005677
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031163
	----------------------------------------------------------------	NM_032085
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007742
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_053304
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_053304
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_053304
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011005
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087352
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087352
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105289
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001081764
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_203889
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001006951
	----------------------------------------------------------------	NM_136816
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001034039
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090075
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079250
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_174520
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079250
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_203889
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003187
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087789
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_203889
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001034039
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087352
	----------------------------------------------------------------	NM_001011005
	----------------------------------------------------------------	NM_001034039
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_032085
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009930
	----------------------------------------------------------------	NM_080538
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182968
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007742
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000090
	----------------------------------------------------------------	NM_080544
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001113224
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000094
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001113515
	----------------------------------------------------------------	NM_000092
	----------------------------------------------------------------	NM_000088
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000088
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_012929
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_012929
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001124177
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001001135
cbriggsae	.((..(((.....((..((((((...........))))))..))...)))..))	1.000 -14.90

cbriggsae

chromosome:chrIV:13482764:13482817:-1

Same_strand|Intronic_non-coding|NM_064152|ash-2 ## Opposite_strand|Intronic_non-coding|NM_067049|Y47D3A.21 ## Same_strand|Intronic_coding|NM_072208|K12B6.7 ## Opposite_strand|Intronic_coding|NM_065139|gip-1 ## {Repeats: no}

block2380 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.753	no	no	0.33/0.33	21/21/1.00	0.0	0.0	1	0	1	0	3	14	5arm	1	nd	0.24	2	1	1	na	na

		reads	miRBase family seed
seed	----CAUACUU--------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---TCATACTTGGAAATTGTGTTG-------------------------------------------------------------------	21	1
cbriggsae	tatTCATACTTGGAAATTGTGTTGtgttaactttgagacagtttatctcgtttcctgcaatagatatcaaaaagtggtcaaaaatgattaa
	*******************************************************************************************
	-----------------------------------------------------------------------------------------------------	NM_182297
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_005650
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_181492
cbriggsae	((.((((..((((..((((((((.(((......(((((.......)))))......)))...))))).....)))..))))..)))).)).	0.410 -12.00

cbriggsae

chromosome:chrIV:1189963:1190053:1

Opposite_strand|Intronic_non-coding|NM_182297|B0546.4 ## Same_strand|Intronic_non-coding|NM_005650|TCF20 ## {Repeats: no}

block3775 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.199	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	0	8	3arm	1	nd	0.40	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------CUUUCUG-------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------GCTTTCTGGCTTATTCCAAGG	21	1
cbriggsae	ccttcgtaaatcggctctgcgattgctgagggactttcttcatcGCTTTCTGGCTTATTCCAAGG
	*****************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001082367
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001082235
	---------------------------------------------------------------------------	NM_005334
cbriggsae	((((.((((..(((....((((....((((((....))))))))))...)))..))))...))))	0.900 -15.10

cbriggsae

chromosome:chrV:9389538:9389602:-1

Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_coding|NM_001082367|ROCK1 ## Opposite_strand|Intronic_non-coding|NM_005334|HCFC1 ## {Repeats: no}

block1497 [novel_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.314	no	no	0.55/0.55	22/22/1.00	0.0	0.0	1	0	1	0	4	14	5arm	15	nd	0.18	2	1	1	na	na

		reads	miRBase family seed
seed	-----UUUCGAG--------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----GTTTCGAGTGTGTGTGCGCCTT------------------------------------------------------------------	22	1
cbriggsae	acccGTTTCGAGTGTGTGTGCGCCTTtaacctttttgtggcgagacctcaacgatagggcgcgcttgcacgaagggagagaaaattggcggg
	********************************************************************************************
	------------------------------------------------------------------------------------------------------	NM_001057898
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_006287
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001129211
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001129210
cbriggsae	.((((((((..(((((.(((((((((.....((.(((.((.....)).))).)).))))))))).)))))...)))...........)))))	0.840 -29.40

cbriggsae

chromosome:chrIII:9415635:9415726:-1

Opposite_strand|Intronic_coding|NM_001057898|Os03g0762900 ## Same_strand|Intronic_non-coding|NM_006287|TFPI ## Same_strand|Intronic_coding|NM_001129211|unc-103 ## {Repeats: no}

block57 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.106	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	7	14	3arm	1	nd	0.26	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------CGAUGUG------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------ACGATGTGTGGAGGCCATT-------	19	1
cbriggsae	tcttagtgatgcgtcgtggaaaacatttgtgaattttagaatgcaaaatagcattgaaaaatatACGATGTGTGGAGGCCATTtaacaga
	******************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_174569
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_174283
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_002035
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_177366
	----------------------------------------------------------------------------------------------------	NM_001107428
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_053878
	----------------------------------------------------------------------------------------------------	NM_008665
cbriggsae	(((....((((.(((.......(((((((((.(((((..(((((......)))))..))))).))))).))))...)))))))....)))	0.930 -18.00

cbriggsae

chromosome:chrI:2073391:2073480:-1

Same_strand|Intronic_non-coding|NM_174569|PABPN1 ## Opposite_strand|Intronic_non-coding|NM_001107428|Zfp612 ## Same_strand|Intronic_coding|NM_053878|Cplx2 ## Opposite_strand|Intronic_coding|NM_008665|Myt1 ## {Repeats: no}

block4434 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.033	no	no	0.58/0.58	19/19/0.00	0.0	0.0	1	0	1	0	13	10	3arm	1	nd	0.05	1	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------GACAAGG------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------AGACAAGGGTGATGGTCGC-------------	19	1
cbriggsae	gagtttcttgatggtgacttggagtccttctttgtcctttggtggagcgttgtcctgttggaAGACAAGGGTGATGGTCGCcatgtccggctca
	**********************************************************************************************
	--------------------------------------------------------------------------------------------------------	NM_172925
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007496
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110231
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_004119
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110232
	--------------------------------------------------------------------------------------------------------	NM_007736
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110229
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011058
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_006206
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010160
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110228
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110230
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090075
	--------------------------------------------------------------------------------------------------------	NM_001087789
	--------------------------------------------------------------------------------------------------------	NM_001079250
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001020811
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083316
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_077435
cbriggsae	(((((.....(((((((((....(((..((((((((.((..(((((......))).))..)).)))))))).))))))))))))....))))).	0.680 -30.80

cbriggsae

chromosome:chrX:5854175:5854268:-1

Opposite_strand|Intronic_non-coding|NM_172925|Klhl31 ## Same_strand|Intronic_non-coding|NM_007496|Zfhx3 ## Same_strand|Intronic_coding|NM_004119|FLT3 ## Opposite_strand|Intronic_coding|NM_007736|Col4a5 ## {Repeats: no}

block97 [novel_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.524	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	26	-4	5arm_loop	47	nd	0.43	5	1	1	na	na

		reads	miRBase family seed
seed	---------------------------UAAUGGU-------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------GTAATGGTCAGCATGGATGCC------------------------------------------------------	21	1
cbriggsae	tgtctctgtttcgccgcgttcgtggtGTAATGGTCAGCATGGATGCCttccaagcacacaggccaggcgcgactgctggataacgggcgaacgccggggcg
	*****************************************************************************************************
	---------------------------------------------------------------------------------------------------------------	NM_026450
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_175692
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001037394
	---------------------------------------------------------------------------------------------------------------	NM_001087652
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_104594
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031795
	---------------------------------------------------------------------------------------------------------------	NM_115574
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001124041
	---------------------------------------------------------------------------------------------------------------	NM_001853
	---------------------------------------------------------------------------------------------------------------	NM_057771
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001031386
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001026315
cbriggsae	.(((((.((((((((.((((.((.((((..(((((.((.((((.....)))).)).....))))).)))).))........)))))))))).)).))))).	0.700 -36.90

cbriggsae

chromosome:chrI:3748060:3748160:-1

block2179 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.637	no	no	0.30/0.30	20/20/1.00	0.0	0.0	1	0	1	0	10	15	3arm	1	nd	0.35	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------AUUUUUU----------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------TATTTTTTTGACGATAGGCT----------	20	1
cbriggsae	ttcaagtcacatcaaaagttttcaccgtttcaaatagttctcaaataaacttgttagtataattcagcatTATTTTTTTGACGATAGGCTaaccttgaat
	****************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027775
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068469
cbriggsae	((((((..........(((((....((((..(((((((.((.((.((.(((....))).)).)).)).)))))))....))))..)))))...)))))).	0.500 -10.72

cbriggsae

chromosome:chrIV:8223633:8223732:-1

Same_strand|Intronic_coding|NM_001027775|Y75B8A.37 ## {Repeats: no}

block1467 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.734	no	no	0.48/0.48	21/21/1.00	0.0	0.0	2	0	1	0	8	13	5arm	7	nd	0.29	4	2	1	na	na

		reads	miRBase family seed
seed	---------CUUACGA------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	--------GCTTACGACCATATCACGTTG-----------------------------------------------------------------	21	2
cbriggsae	gatgtgatGCTTACGACCATATCACGTTGaatgcacgccatcccgtccgatctggcaagttaagcaacgttgagtccagttagtacttggatcg
	**********************************************************************************************
	--------------------------------------------------------------------------------------------------------	NM_001092591
	--------------------------------------------------------------------------------------------------------	NM_177186
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001030661
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027534
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027535
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066897
	................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.	NM_170601
cbriggsae	(((.(((((((.(((((((....((((((...((..((((((......))..))))..))....)))))))).)))..)).)))).))).))).	0.500 -20.70

cbriggsae

chromosome:chrIII:8639745:8639838:-1

Opposite_strand|Intronic_non-coding|NM_001092591|MGC81879 ## Same_strand|Intronic_non-coding|NM_001030661|SETD1B ## Opposite_strand|Boundary_non-coding|NM_170601|SIAE ## {Repeats: no}

block3242 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.753	no	no	0.48/0.48	21/21/1.00	0.0	0.0	2	0	1	0	8	13	5arm	7	nd	0.38	4	2	1	na	na

		reads	miRBase family seed
seed	---------CUUACGA--------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	--------GCTTACGACCATATCACGTTG-------------------------------------------------------------	21	2
cbriggsae	catgtgatGCTTACGACCATATCACGTTGaatgcacgccatcccgtccgatctggcaagttaagcaacgttgagtccagttagtacttgg
	******************************************************************************************
cbriggsae	((.(((..(((...(((((....((((((...((..((((((......))..))))..))....)))))))).))).)))...))).)).	0.970 -18.40

cbriggsae

chromosome:chrUn:4856988:4857077:-1

{Repeats: no}

block257 [novel_Multihit_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.167	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	25	-3	3arm_loop	47	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------UAAUGGU--------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------GTAATGGTCAGCATGGATGCC-------------------------	21	1
cbriggsae	tcgtattgtctttggaatgttctagaagatgttctatgcgttcgtggtGTAATGGTCAGCATGGATGCCttccaagcattcgacgggggttcga
	**********************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	--------------------------------------------------------------------------------------------------------	NM_199320
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_014333
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001098517
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061553
	--------------------------------------------------------------------------------------------------------	NM_067080
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001077534
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020120
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_198899
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_133596
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_060083
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001025777
cbriggsae	(((.(((.((.((.(((((((...((((..((.((((((..((((......))))...))))))))..))))..))))))))).)).))).)))	0.700 -25.30

cbriggsae

chromosome:chrI:1360363:1360456:1

Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_non-coding|NM_199320|PHF17 ## Same_strand|Intronic_coding|NM_061553|C13A10.1 ## Opposite_strand|Intronic_coding|NM_067080|Y66D12A.21 ## {Repeats: no}

block2017 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.819	no	no	0.39/0.39	18/18/0.00	0.0	0.0	2	0	1	0	34	-1	5arm_loop	2	nd	0.33	3	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------UCUCCCA------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	----------------------------------TTCTCCCAATGTACTTTG--------------------------------------------------------	18	2
cbriggsae	tgtcatattgtttttaaaaactttcccaaattagTTCTCCCAATGTACTTTGaaaagtaaaagataaaaaggcattttagaagggtttttttggagcgaaatcgggca
	************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020714
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_060105
	----------------------------------------------------------------------------------------------------------------------	NM_001047451
cbriggsae	.(((...((((((..(((((....(((.......((((...(((((.((((................)))))))))..))))))).)))))..)))))).....))).	0.670 -15.10

cbriggsae

chromosome:chrIV:2690475:2690582:-1

Same_strand|Intronic_non-coding|NM_020714|ZNF490 ## Opposite_strand|Intronic_coding|NM_001047451|C27H2.2 ## {Repeats: no}

block1872 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.522	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	17	3	3arm	1	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------UUUCCCA----------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------TTTTCCCACGCACGATTGG-----------------	19	1
cbriggsae	tttttttgaatgtttcagctaatcattaaaagtgaagttattttaatccttcttaaTTTTCCCACGCACGATTGGaattgagtttcacaaaa
	********************************************************************************************
cbriggsae	.((((.((((...((((.((((((.......(((((((((.............))))))...)))....))))))...)))).)))).))))	0.580 -10.72

cbriggsae

chromosome:chrIII_random:94506:94597:1

{Repeats: no}

block881 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.412	no	no	0.64/0.64	22/22/1.00	0.0	0.0	1	0	1	0	21	10	5arm	2	nd	0.18	2	1	1	na	na

		reads	miRBase family seed
seed	----------------------UGGAGCC---------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------GTGGAGCCTGGTGGTGGTGACT-------------------------------------------------------------------------	22	1
cbriggsae	gttttttttgtatcggcatatGTGGAGCCTGGTGGTGGTGACTggtccttgggcaattttctttcgaccttgccagctttcgaaatggtccacgtctgccacggcttcctcagaac
	********************************************************************************************************************
	------------------------------------------------------------------------------------------------------------------------------	NM_075282
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011794
cbriggsae	(((((....((...((((.(((((((.(((((.((((((((..((((...(((......)))...)))))))))).)).)))....))))))))).))))...))......)))))	0.530 -31.50

cbriggsae

chromosome:chrII:2279395:2279510:1

Opposite_strand|Intronic_non-coding|NM_075282|wrs-1 ## Same_strand|Intronic_non-coding|NM_011794|Bpnt1 ## {Repeats: no}

block1789 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.710	no	no	0.56/0.56	25/25/0.00	0.0	0.0	1	0	1	0	0	14	3arm	1	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------UGGACAC-----------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------GTGGACACGTAGTCTAGTGGCTTGC	25	1
cbriggsae	cgaccacccaccactctccatttttcacacgttcttatccggctttcacctcatatccgtatGTGGACACGTAGTCTAGTGGCTTGC
	***************************************************************************************
	-------------------------------------------------------------------------------------------------	NM_000209
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_170975
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027762
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007723
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011571
	-------------------------------------------------------------------------------------------------	NM_075282
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075505
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010466
	-------------------------------------------------------------------------------------------------	NM_133381
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065139
	-------------------------------------------------------------------------------------------------	NM_075413
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001050895
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001013315
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105043
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001067238
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001067238
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001067238
cbriggsae	(((((((..((.((..((((.....((.(((....(((..((......))..)))..))).))))))...)).))...)))).))).	0.420 -11.00

cbriggsae

chromosome:chrIII:10373999:10374085:1

Opposite_strand|Intronic_non-coding|NM_000209|PDX1 ## Same_strand|Intronic_non-coding|NM_170975|C33C12.10 ## Same_strand|Intronic_coding|NM_007723|Cnga1 ## {Repeats: no}

block1984 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.382	no	no	0.47/0.47	19/19/0.00	0.0	0.0	1	0	1	0	33	3	5arm	1	nd	0.37	4	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------GGAAUAG---------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------TGGAATAGGGCTGATTCTC----------------------------------------------------------------	19	1
cbriggsae	gatatcagcattgtgaaacagtaaatatgttaaTGGAATAGGGCTGATTCTCaacggcattagttgaatccaaacggcttatctcatttggttaaatttgtacaaaaaaggtgtca
	********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070351
	------------------------------------------------------------------------------------------------------------------------------	NM_001090906
	------------------------------------------------------------------------------------------------------------------------------	NM_182271
cbriggsae	((((((....(((((......(((.......((((..(((.(((((....(((((.......))))).......))))))))..))))...)))......)))))....)))))).	0.570 -21.30

cbriggsae

chromosome:chrIV:2100025:2100140:-1

Same_strand|Intronic_non-coding|NM_070351|LLC1.2 ## Opposite_strand|Intronic_non-coding|NM_001090906|EEF1D ## Opposite_strand|Intronic_coding|NM_182271|K02E7.4 ## {Repeats: no}

block1668 [novel_lenNOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.422	no	no	0.30/0.33	18/20/0.50	0.0	1.0	2	0	1	0	21	0	3arm	1	nd	0.30	4	2	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------UUAUGAA---------------------------------	2	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------GTTATGAATACCGTCAAA-----------------------	18	1
	------------------------------------------------------GTTATGAATACCGTCAAATT---------------------	20	1
cbriggsae	gcttccgcgtttcattttttccgatgcatgatgcatttgtcctaatgataccaaGTTATGAATACCGTCAAATTggggaatggaggaatggatgg
	***********************************************************************************************
	---------------------------------------------------------------------------------------------------------	NM_001016781
	---------------------------------------------------------------------------------------------------------	NM_001005609
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001043354
	---------------------------------------------------------------------------------------------------------	NM_111431
	---------------------------------------------------------------------------------------------------------	NM_001399
	---------------------------------------------------------------------------------------------------------	NM_212504
	---------------------------------------------------------------------------------------------------------	NM_007473
	---------------------------------------------------------------------------------------------------------	NM_136816
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001098634
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_019027
	---------------------------------------------------------------------------------------------------------	NM_131262
	---------------------------------------------------------------------------------------------------------	NM_001014761
cbriggsae	...((((..((((...((..(((((...(((((......((.((((........)))).))....))))).)))))..))..))))..))))...	0.650 -21.20

cbriggsae

chromosome:chrIII:3886316:3886410:1

Opposite_strand|Intronic_non-coding|NM_001016781|LOC549535 ## Opposite_strand|Intronic_coding|NM_001005609|EDA ## Same_strand|Intronic_non-coding|NM_001043354|Rorb ## {Repeats: no}

block1322 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.280	no	no	0.46/0.46	24/24/1.00	0.0	0.0	1	0	1	0	12	9	5arm	1	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	-------------CGUUUGU----------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------GCGTTTGTGTCACGTGTTCATTGT------------------------------------------------------------	24	1
cbriggsae	tcttacttctgtGCGTTTGTGTCACGTGTTCATTGTagagaatgctgaaaaatgtgtttttaacgatcacgaatagctaaaatcactttgttagaa
	************************************************************************************************
	----------------------------------------------------------------------------------------------------------	NM_001011629
	----------------------------------------------------------------------------------------------------------	NM_172925
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065286
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001093260
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009573
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_130279
cbriggsae	(((.((....(((..(((((....((((...(((((.((((((((........)))))))).)))))))))....)).)))..)))...)).))).	0.990 -18.60

cbriggsae

chromosome:chrIII:2282888:2282983:-1

Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_non-coding|NM_065286|Y53G8AR.6 ## {Repeats: no}

block3370 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.942	no	no	0.58/0.58	24/24/1.00	0.0	0.0	1	0	1	0	2	12	3arm	10	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------AUAACCC------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------CATAACCCAGAGGTCGGTGGATCG--	24	1
cbriggsae	tccctcccaactgtctcttgtcagcagcgtggcgcagtggaagcgtgctgggccCATAACCCAGAGGTCGGTGGATCGaa
	********************************************************************************
cbriggsae	((..(((..(((((((((.((.....((.((((((.((....)))))))).)).....))..))))).)))))))..)).	0.430 -21.50

cbriggsae

chromosome:chrUn:854032:854111:1

{Repeats: no}

block292 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.702	no	no	0.70/0.70	20/20/1.00	0.0	0.0	1	0	1	0	1	36	5arm	1	58	0.55	4	1	1	na	na

		reads	miRBase family seed
seed	--GACUGCG---------------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-CGACTGCGCACCGACTCCAC---------------------------------------------------------------------------------------------------	20	1
cbriggsae	tCGACTGCGCACCGACTCCACaacaaactactcgcccctccctgagctgagtactcaatctctgagtccggcagaaaataagggtacaaacatggggaagattattttgagtccgattcg
	************************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_060137
	----------------------------------------------------------------------------------------------------------------------------------	NM_001122952
	----------------------------------------------------------------------------------------------------------------------------------	NM_001088550
	----------------------------------------------------------------------------------------------------------------------------------	NM_010905
	----------------------------------------------------------------------------------------------------------------------------------	NM_001122953
	----------------------------------------------------------------------------------------------------------------------------------	NM_011543
	----------------------------------------------------------------------------------------------------------------------------------	NM_001087250
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001025922
	....................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++	NM_058737
cbriggsae	.(((...((....(((((......(((.((.((.((((.((((...(((...(((((.....)))))....)))......)))).........))))..)).)).))))))))))..)))	0.860 -24.10

cbriggsae

chromosome:chrI:3226804:3226923:1

Same_strand|Intronic_coding|NM_060137|F42H11.1 ## Opposite_strand|Intronic_non-coding|NM_001122952|Nfia ## Opposite_strand|Intronic_coding|NM_001088550|FGFR-4c ## Same_strand|Intronic_non-coding|NM_001025922|unc-87 ## {Repeats: no}

block2934 [novel_lenNOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.484	no	no	0.36/0.36	25/25/0.00	0.0	0.0	1	0	1	0	16	18	5arm	3	nd	0.28	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------UUACUAG------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------TTTACTAGAGTTGATATGTCGACCT-------------------------------------------------------------------------------	25	1
cbriggsae	catactaaaaatcactTTTACTAGAGTTGATATGTCGACCTttgtgataactgtttttattattatattagaaaattatatattgcatatttattttaggaaaattaaaatttgaagtgt
	************************************************************************************************************************
cbriggsae	.(((((..((((...((((.(((((((.((((((.(((....((((((.....((((((.........))))))))))))..))))))))).))))))).)))).....))))..)))))	0.590 -16.20

cbriggsae

chromosome:chrM:3242:3361:-1

{Repeats: no}

block153 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.494	no	no	0.50/0.63	21/27/0.90	0.0	0.3	7	0	1	0	22	-8	3arm	20	nd	0.52	7	10	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------CCUUAGG-------------------------------------	7	novel
seed	---------------------------------------------------AGGUCGC---------------------------------	1	novel
seed	-------------------------------------------------------CGCUGGU-----------------------------	1	novel
seed	--------------------------------------------------UAGGUCG----------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------TCCTTAGGTCGCTGGTTCGAATC----------------------	23	5
	----------------------------------------------TCCTTAGGTCGCTGGTTCGAAT-----------------------	22	2
	------------------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA----------	27	1
	-------------------------------------------------TTAGGTCGCTGGTTCGAATCCG--------------------	22	1
	--------------------------------------------------TAGGTCGCTGGTTCGAATCCG--------------------	21	1
cbriggsae	tcgatagctcagttggtagagcggaggactgtagagtcagtgggtaTCCTTAGGTCGCTGGTTCGAATCcggctcgacggattgccttttg
	*******************************************************************************************
	-----------------------------------------------------------------------------------------------------	NM_001087279
	-----------------------------------------------------------------------------------------------------	NM_001099171
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_176035
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205985
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205986
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_102365
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001084127
cbriggsae	.(((.((..(((((.((.((((...(((.....((..((((((...........))))))..))...))).)))).)).))))).)).)))	0.620 -25.60

cbriggsae

chromosome:chrI:7981395:7981485:-1

Opposite_strand|Intronic_non-coding|NM_001087279|fbxl5 ## Same_strand|Intronic_coding|NM_176035|nAcRalpha-34E ## {Repeats: no}

block4197 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.496	no	no	0.45/0.45	22/22/1.00	0.0	0.0	1	0	1	0	3	14	5arm	8	nd	0.50	5	1	1	na	na

		reads	miRBase family seed
seed	----CCAGCUA----------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---TCCAGCTAGTGTGTGGTAGAAT--------------------------------------------------	22	1
cbriggsae	aatTCCAGCTAGTGTGTGGTAGAATgcttttactcgtgtagatgacacgtgtggtatctcaaacttgggtaatta
	***************************************************************************
	-------------------------------------------------------------------------------------	NM_001026206
	-------------------------------------------------------------------------------------	NM_071054
	-------------------------------------------------------------------------------------	NM_074620
	-------------------------------------------------------------------------------------	NM_074618
	-------------------------------------------------------------------------------------	NM_074614
	-------------------------------------------------------------------------------------	NM_077929
	-------------------------------------------------------------------------------------	NM_001028567
	-------------------------------------------------------------------------------------	NM_067949
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_063805
	-------------------------------------------------------------------------------------	NM_074647
	-------------------------------------------------------------------------------------	NM_074619
	-------------------------------------------------------------------------------------	NM_070063
cbriggsae	((((((....(((.((.((((........((((.(((((.....))))).)))))))).)).)))..)).)))).	0.820 -14.50

cbriggsae

chromosome:chrV:13781109:13781183:1

Opposite_strand|Intronic_coding|NM_001026206|nhr-50 ## Same_strand|Intronic_coding|NM_063805|srh-135 ## {Repeats: no}

block3625 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.426	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	21	4	5arm	2	nd	0.26	3	1	1	na	na

		reads	miRBase family seed
seed	----------------------UGAGGUU--------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------GTGAGGTTTGCGGTCTTCA---------------------------------------------------------	19	1
cbriggsae	ctcttcctttgcttgcattttGTGAGGTTTGCGGTCTTCAgttagagagataacctagaattgtaaaattatcgatgtgcttctgtaaactgcgagt
	*************************************************************************************************
	-----------------------------------------------------------------------------------------------------------	NM_001028815
	-----------------------------------------------------------------------------------------------------------	NM_170227
	-----------------------------------------------------------------------------------------------------------	NM_001114052
cbriggsae	(((....(((((..((((.((((((..((((((((((...((((......))))..))).))))))).))).))).))))....)))))....))).	0.890 -19.60

cbriggsae

chromosome:chrV:746687:746783:-1

Opposite_strand|Intronic_coding|NM_001028815|F56H9.6 ## {Repeats: no}

block278 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.702	no	no	0.55/0.55	22/22/1.00	0.0	0.0	1	0	1	0	2	16	5arm	2	nd	0.27	2	1	1	na	na

		reads	miRBase family seed
seed	---AUUUCGG--------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--GATTTCGGTGAGCTCCGTTTGG------------------------------------------------------------------	22	1
cbriggsae	gtGATTTCGGTGAGCTCCGTTTGGtacattgcggcatttctcttgaattctgtggcacgcaaaatcgactgtagatcgttgctgattgca
	******************************************************************************************
	----------------------------------------------------------------------------------------------------	NM_174569
	----------------------------------------------------------------------------------------------------	NM_174283
	----------------------------------------------------------------------------------------------------	NM_002035
	----------------------------------------------------------------------------------------------------	NM_177366
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001107428
	----------------------------------------------------------------------------------------------------	NM_053878
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008665
cbriggsae	((((((.((..((.((.((.(((((...(((((((..(((....))).......)).))))).))))).)).)).))..))..)))))).	0.480 -18.60

cbriggsae

chromosome:chrI:2072830:2072919:1

Opposite_strand|Intronic_non-coding|NM_174569|PABPN1 ## Same_strand|Intronic_non-coding|NM_001107428|Zfp612 ## Opposite_strand|Intronic_coding|NM_053878|Cplx2 ## Same_strand|Intronic_coding|NM_008665|Myt1 ## {Repeats: no}

block365 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.131	no	no	0.45/0.45	20/20/1.00	0.0	0.0	1	0	1	0	4	26	5arm	1	nd	0.40	4	1	1	na	na

		reads	miRBase family seed
seed	-----GCUCUUU--------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----TGCTCTTTGGCCTTTATTGG--------------------------------------------------------------------------------------	20	1
cbriggsae	ttgaTGCTCTTTGGCCTTTATTGGacactttctaaaatgaactgattctttcttttcaagtttcagtgttgtcatattttagtttcacattcgaatatgctagcatacag
	**************************************************************************************************************
	------------------------------------------------------------------------------------------------------------------------	NM_001103403
	------------------------------------------------------------------------------------------------------------------------	NM_012772
	------------------------------------------------------------------------------------------------------------------------	NM_007723
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_171630
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008855
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_171940
	------------------------------------------------------------------------------------------------------------------------	NM_007386
	------------------------------------------------------------------------------------------------------------------------	NM_001111130
	------------------------------------------------------------------------------------------------------------------------	NM_060099
	------------------------------------------------------------------------------------------------------------------------	NM_059295
	------------------------------------------------------------------------------------------------------------------------	NM_182309
cbriggsae	.(((((((....(((...((((.((......((((((((.(((((..(((.......)))..))))).......))))))))........)).)))).)))))))).)).	0.920 -19.54

cbriggsae

chromosome:chrI:8402099:8402208:1

Opposite_strand|Intronic_coding|NM_001103403|tlk ## Same_strand|Intronic_non-coding|NM_171630|toca-1 ## Opposite_strand|Intronic_non-coding|NM_007386|Aco1 ## {Repeats: no}

block382 [novel_lenNOK_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.028	no	no	0.32/0.32	19/19/0.00	0.0	0.0	1	0	1	0	34	-3	3arm_loop	1	nd	0.26	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------UAUUGUG---------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------TTATTGTGAGAAGTGTACT----------------------------------	19	1
cbriggsae	tttttactgttccagaggtaagtttactaaaagagatacttctccgagctaaTTATTGTGAGAAGTGTACTaatcgcagaattcgggactttggaaggttagaaa
	*********************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199320
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_060440
cbriggsae	((((.(((.((((((((...(((((........((((((((((((((........))).))))))))).)).......))))).....))))))))))).)))).	0.640 -25.56

cbriggsae

chromosome:chrI:8928096:8928200:1

Same_strand|Intronic_non-coding|NM_199320|PHF17 ## Same_strand|Intronic_coding|NM_060440|srt-62 ## {Repeats: no}

block1652 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.031	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	18	12	3arm	1	nd	0.20	3	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------UGGUACU------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------------------------------------GTGGTACTCCTGGTTCATCT------------------	20	1
cbriggsae	catccgaatgctccagatgaatttcagcatcatgaccagcagtgacaaatctcaattgcttttGTGGTACTCCTGGTTCATCTgttcgtcgctgtgggtgt
	*****************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214211
	---------------------------------------------------------------------------------------------------------------	NM_172925
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001035248
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_057428
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001062274
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001005123
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001091987
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001069872
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001069872
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205075
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001037113
	---------------------------------------------------------------------------------------------------------------	NM_133195
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001022613
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001019821
	---------------------------------------------------------------------------------------------------------------	NM_058246
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_003333
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_003333
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001033930
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001076363
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001124194
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001126212
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001009286
	---------------------------------------------------------------------------------------------------------------	NM_204254
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020265
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<---------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_065747
cbriggsae	((((((...((..((((((((((..((.(((((((..((((((((......))).))))).))))))).))...))))))))))......))..)))))).	1.000 -30.00

cbriggsae

chromosome:chrIII:3223892:3223992:1

Same_strand|Intronic_coding|NM_214211|UBA52 ## Opposite_strand|Intronic_non-coding|NM_172925|Klhl31 ## Same_strand|Intronic_non-coding|NM_020265|Dkk2 ## Opposite_strand|Boundary_coding|NM_065747|Y32H12A.5 ## {Repeats: no}

block2456 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.195	no	no	0.40/0.40	20/20/1.00	0.0	0.0	1	0	1	0	8	3	5arm	2	nd	0.50	3	1	1	na	na

		reads	miRBase family seed
seed	---------GACAAUG--------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------TGACAATGATTTAGGTGAGG--------------------------------------	20	1
cbriggsae	attgaagtTGACAATGATTTAGGTGAGGaaaaaatataatttcaattttttttctggaaatttcaa
	******************************************************************
cbriggsae	.((((((((..((..((...((((...((((........)))).))))..))..))..))))))))	0.960 -9.40

cbriggsae

chromosome:chrIV:2422217:2422282:1

{Repeats: no}

sblock85 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.26/0.40	19/21/0.56	0.0 0.7	0.0 0.7	3 3	0 0	1 1	0 0	10 23	25 12	5arm 3arm	14 14	nd nd	0.15 0.21	1 3	9	1	-13	-14

		reads	miRBase family seed
seed	-----------GAAUAAG------------------------------------------------------------------------------------------------------	5	novel
seed	-----------------------------------------------------------------------------GAAUAAG------------------------------------	2	novel
seed	------------AAUAAGU-----------------------------------------------------------------------------------------------------	1	novel
seed	-------------------------------------------------------------------------------AUAAGUA----------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------GGAATAAGTAGTACCAATGG------------------------------------------------------------------------------------------	20	3
	----------------------------------------------------------------------------GGAATAAGTAGTACCAATA-------------------------	19	2
	----------GGAATAAGTAGTACCAATG-------------------------------------------------------------------------------------------	19	1
	------------------------------------------------------------------------------AATAAGTAGTACCAATATG-----------------------	19	1
	-----------GAATAAGTAGTACCAATGGT-----------------------------------------------------------------------------------------	20	1
	----------GGAATAAGTAGTACCAATGGT-----------------------------------------------------------------------------------------	21	1
cbriggsae	ctacttactcGGAATAAGTAGTACCAATGGtactacttactcggaataagtagtaccaattcgatactactcactcGGAATAAGTAGTACCAATAtggtactaattactcggaataagta
	************************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------------	NM_011978
cbriggsae	.((((((.((.((.(((.((((((((.((((((((((((.((.((...(((((((.........)))))))...)).)).))))))))))))...)))))))).))).)).)).))))))	1.000 -48.10

cbriggsae

chromosome:chrX:14750991:14751110:1

Opposite_strand|Intronic_non-coding|NM_011978|Slc27a2 ## {SimpF: trf}

block3480 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.594	no	no	0.52/0.52	29/29/0.00	0.0	0.0	1	0	1	0	2	6	5arm	3	nd	0.41	4	1	1	na	na

		reads	miRBase family seed
seed	---UGGUUAC------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--ATGGTTACCTAAGGCTCATGTTGAGGCCC---------------------------------------------	29	1
cbriggsae	ctATGGTTACCTAAGGCTCATGTTGAGGCCCccactacagctagtatacttttagcaggccttttattaaaattgg
	****************************************************************************
cbriggsae	(((...(((...((((((..((((((((.....((((....))))....))))))))))))))....)))...)))	0.640 -12.80

cbriggsae

chromosome:chrUn:4248337:4248412:1

{Repeats: no}

block1315 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.135	no	no	0.58/0.58	24/24/1.00	0.0	0.0	1	0	1	0	9	1	5arm	10	nd	0.12	2	1	1	na	na

		reads	miRBase family seed
seed	----------AUAACCC----------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------CATAACCCAGAGGTCGGTGGATCG------------------------------------------------	24	1
cbriggsae	tgctgggccCATAACCCAGAGGTCGGTGGATCGaaaccactcgctgctagaaccttttttgcggttttttgggttacggta
	*********************************************************************************
	-------------------------------------------------------------------------------------------	NM_001027762
	-------------------------------------------------------------------------------------------	NM_067650
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075282
	-------------------------------------------------------------------------------------------	NM_061817
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075513
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071129
	-------------------------------------------------------------------------------------------	NM_071129
	-------------------------------------------------------------------------------------------	NM_075409
	-------------------------------------------------------------------------------------------	NM_172925
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001129219
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027762
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090026
	-------------------------------------------------------------------------------------------	NM_001079600
	-------------------------------------------------------------------------------------------	NM_172541
	-------------------------------------------------------------------------------------------	NM_067650
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067787
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067659
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075459
	-------------------------------------------------------------------------------------------	NM_061965
	-------------------------------------------------------------------------------------------	NM_075282
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070558
	-------------------------------------------------------------------------------------------	NM_001037901
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064510
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_072208
	-------------------------------------------------------------------------------------------	NM_065010
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_077859
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001129266
cbriggsae	(((((((((((.(((((((((((((((((..(((......)))))))).)).))))...)).))))...)))))).)))))	0.590 -25.60

cbriggsae

chromosome:chrIII:1765911:1765991:-1

Opposite_strand|Intronic_coding|NM_001027762|smr-1 ## Opposite_strand|Intronic_non-coding|NM_067650|Y104H12D.3 ## Same_strand|Intronic_non-coding|NM_075282|wrs-1 ## Same_strand|Intronic_coding|NM_075513|ZC15.5 ## {Repeats: no}

block1991 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.240	no	no	0.37/0.37	19/19/0.00	0.0	0.0	2	0	1	0	1	11	3arm	1	nd	0.32	3	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------UACAUGA------------	2	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------TTACATGACAACTATCGAG-	19	2
cbriggsae	tttcgtctgtttcatgggtttgatgtttagaataactttatgttgtaatcgcTTACATGACAACTATCGAGa
	************************************************************************
cbriggsae	(((((...((((((((....((((.......(((((.....))))).))))....))))).)))...)))))	0.960 -12.80

cbriggsae

chromosome:chrIV:2298411:2298482:-1

{Repeats: no}

block2048 [novel_lenNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.010	no	no	0.37/0.37	19/19/0.00	0.0	0.0	1	0	1	0	16	10	5arm	1	nd	0.21	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------GUUCUUA------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------TGTTCTTACTTCACTTTGG-------------------------------------------------------------	19	1
cbriggsae	aattttaggaaatcatTGTTCTTACTTCACTTTGGaaaactcaaatgtttttgtttttttcaagtggagttagctattgtttatttcatttgaggt
	************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105717
	----------------------------------------------------------------------------------------------------------	NM_198022
	----------------------------------------------------------------------------------------------------------	NM_020066
cbriggsae	.((((((.(((((((..(((...(((((((.((((((((..((((....))))..))))))))))))))).)))...))...)))))...))))))	0.950 -20.90

cbriggsae

chromosome:chrIV:3255189:3255284:-1

Same_strand|Intronic_non-coding|NM_001105717|Dpysl2 ## Opposite_strand|Intronic_non-coding|NM_198022|Tnrc6c ## Opposite_strand|Intronic_coding|NM_020066|FMN2 ## {Repeats: no}

block48 [novel_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.069	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	3	4	3arm	49	nd	0.15	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------CGUUCGU---------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------GCGTTCGTGGTGTAATGGTC---	20	1
cbriggsae	cgctgatttatatacgacaagaggatgaaagtttcaacatGCGTTCGTGGTGTAATGGTCagc
	***************************************************************
	-------------------------------------------------------------------------	NM_001011629
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199320
	-------------------------------------------------------------------------	NM_014333
	-------------------------------------------------------------------------	NM_001098517
	-------------------------------------------------------------------------	NM_061553
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067080
cbriggsae	.(((((((..(((((.((....(((((...((....))...))))))).)))))..)))))))	0.860 -16.40

cbriggsae

chromosome:chrI:1372413:1372475:-1

sblock36 [novel_multiarm_DicerNOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.491	no	no	0.59/0.60	20/22/1.00	0.0 0.0	0.0 0.0	1 1	0 0	1 1	0 0	11 14	22 21	5arm 3arm	4 4	nd nd	0.32 0.30	4 5	2	1	-2	-7

		reads	miRBase family seed
seed	------------GCUAUGA-------------------------------------------------------------------------------------------------	1	novel
seed	-----------------------------------------------------------------------------------GCCAAUG--------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------GGCTATGAAGATGCGCTCGAGG-----------------------------------------------------------------------------------	22	1
	----------------------------------------------------------------------------------GGCCAATGGCGTGCGCTTTT--------------	20	1
cbriggsae	ggaagaataatGGCTATGAAGATGCGCTCGAGGcgtgggacttttttcgagaattcaaaacaatttttgtgtatggaggatgGGCCAATGGCGTGCGCTTTTcacaaagtttatcc
	********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_172925
	------------------------------------------------------------------------------------------------------------------------------	NM_065286
	------------------------------------------------------------------------------------------------------------------------------	NM_001093260
	------------------------------------------------------------------------------------------------------------------------------	NM_009573
	------------------------------------------------------------------------------------------------------------------------------	NM_130279
cbriggsae	(((.((((..((....((((((.((((.((.(((.((...((((...((((((((......)))))))).....))))..)).))).....)).))))))))))))..)))).)))	0.980 -27.50

cbriggsae

chromosome:chrIII:2308441:2308556:1

Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_non-coding|NM_065286|Y53G8AR.6 ## {Repeats: no}

block3112 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.594	no	no	0.52/0.52	29/29/0.00	0.0	0.0	1	0	1	0	2	6	5arm	3	nd	0.41	4	1	1	na	na

		reads	miRBase family seed
seed	---UGGUUAC------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--ATGGTTACCTAAGGCTCATGTTGAGGCCC---------------------------------------------	29	1
cbriggsae	ctATGGTTACCTAAGGCTCATGTTGAGGCCCccactacagctagtatacttttagcaggccttttattaaaattgg
	****************************************************************************
cbriggsae	(((...(((...((((((..((((((((.....((((....))))....))))))))))))))....)))...)))	0.640 -12.80

cbriggsae

chromosome:chrUn:4220822:4220897:-1

{Repeats: no}

block3093 [novel_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.063	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	3	11	3arm	49	nd	0.25	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------CGUUCGU---------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------GCGTTCGTGGTGTAATGGTC---	20	1
cbriggsae	gctgccgccgcgccaggccgctaatttatatacgacaaggcaaagaatcttgaagtgtGCGTTCGTGGTGTAATGGTCagc
	*********************************************************************************
cbriggsae	(((((((..((((((((.(((........((((..(((((.......)))))..))))))).)).))))))..))).))))	1.000 -26.10

cbriggsae

chromosome:chrUn:4077989:4078069:-1

{Repeats: no}

block4891 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.483	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	7	1	3arm	1	nd	0.29	2	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------UUUUGAG--------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------GTTTTGAGACTAGCTTCCAAT-------	21	1
cbriggsae	attgatcctactttgatggcttccagtaccgcgacaacgtcctcattcGTTTTGAGACTAGCTTCCAATacttcaa
	****************************************************************************
	--------------------------------------------------------------------------------------	NM_153821
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_125756
	--------------------------------------------------------------------------------------	NM_204793
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_079593
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_169386
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_176459
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001016575
	--------------------------------------------------------------------------------------	NM_001085944
cbriggsae	.((((.......(((..((((...(((....(((.((((........)))))))..)))))))..)))....))))	0.600 -10.50

cbriggsae

chromosome:chrX:6635614:6635689:1

Opposite_strand|Intronic_non-coding|NM_153821|Prrx1 ## Same_strand|Intronic_coding|NM_125756|HEN3 ## Same_strand|Intronic_non-coding|NM_079593|pros ## {Repeats: no}

block4985 [novel_lenNOK_mirtron_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.006	no	no	0.31/0.31	26/26/0.00	0.0	0.0	1	0	1	0	6	11	3arm	1	0	0.19	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------UUUUCUU------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------TTTTTCTTAATCTGAGCTACTTACAG------	26	1
cbriggsae	acccatagtaagttggtcaggtggaaaatgtgtatctctatgaaaaactacaTTTTTCTTAATCTGAGCTACTTACAGtgtgtc
	************************************************************************************
	----------------------------------------------------------------------------------------------	NM_001122952
	----------------------------------------------------------------------------------------------	NM_001122953
	----------------------------------------------------------------------------------------------	NM_010905
	----------------------------------------------------------------------------------------------	NM_008301
	----------------------------------------------------------------------------------------------	NM_014930
	----------------------------------------------------------------------------------------------	NM_027552
	----------------------------------------------------------------------------------------------	NM_022702
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011438
	----------------------------------------------------------------------------------------------	NM_001075863
	----------------------------------------------------------------------------------------------	NM_001002012
	>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>	NM_076603
cbriggsae	((.(((.(((((.((((((((((((((((((((.((.....))...)).)))))))))...)))))).)))))))).))).)).	1.000 -22.00

cbriggsae

chromosome:chrX:11267200:11267283:1

Opposite_strand|Intronic_non-coding|NM_001122952|Nfia ## Opposite_strand|Intronic_coding|NM_014930|ZNF510 ## Same_strand|Intronic_non-coding|NM_011438|Sox12 ## Same_strand|UTR_coding|NM_076603|F22F4.1 ## {Repeats: no}

block3415 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.041	no	no	0.36/0.36	22/22/1.00	0.0	0.0	1	0	1	0	8	19	3arm	1	nd	0.45	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------AAAUUGU----------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------AAAATTGTTGGGATATCTAGCC--------	22	1
cbriggsae	gctcttctcgaaacccatatttttcattggtatgtgccaattcatgattgccacgtagcattatAAAATTGTTGGGATATCTAGCCttatagca
	**********************************************************************************************
	--------------------------------------------------------------------------------------------------------	NM_065950
	--------------------------------------------------------------------------------------------------------	NM_065951
cbriggsae	(((...((.((..((((.(((((....((.((((((.(((((...))))).)))))).))....)))))...))))...)).))......))).	0.630 -20.80

cbriggsae

chromosome:chrUn:2130476:2130569:1

Opposite_strand|Intronic_coding|NM_065950|C23G10.1 ## {Repeats: no}

block2483 [novel_cloningOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.190	no	no	0.40/0.43	20/21/1.00	0.0	0.0	4	0	1	0	33	-4	3arm_loop	1	nd	0.33	3	5	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------CGAGUCG----------------------------------------------	5	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------TCGAGTCGAGTATTAGTTCTG---------------------------------	21	4
	----------------------------------------------------------TCGAGTCGAGTATTAGTTCT----------------------------------	20	1
cbriggsae	ttattgaaaatttctgtttcaaaaagattgttttaattggcttgacaattcaattcatTCGAGTCGAGTATTAGTTCTGataaatttaaagttttggttcagagacgcagtg
	****************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------	NM_020714
	--------------------------------------------------------------------------------------------------------------------------	NM_068273
	--------------------------------------------------------------------------------------------------------------------------	NM_068260
	--------------------------------------------------------------------------------------------------------------------------	NM_071298
	--------------------------------------------------------------------------------------------------------------------------	NM_060105
	--------------------------------------------------------------------------------------------------------------------------	NM_071271
cbriggsae	.(((((....((((((..((((((...(((((..((((((((((((................)))))))..)))))..)))))........))))))..))))))..)))))	0.710 -21.09

cbriggsae

chromosome:chrIV:2781621:2781732:1

Opposite_strand|Intronic_non-coding|NM_020714|ZNF490 ## Opposite_strand|Intronic_coding|NM_068273|str-155 ## {Repeats: no}

block521 [novel_Multihit_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.055	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	0	12	5arm	49	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	-CGUUCGU------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	GCGTTCGTGGTGTAATGGTC------------------------------------------------	20	1
cbriggsae	GCGTTCGTGGTGTAATGGTCagcatggatgctttccaagcattcacaggtcctaggcgatgatgcgca
	********************************************************************
	------------------------------------------------------------------------------	NM_000091
	------------------------------------------------------------------------------	NM_214466
	------------------------------------------------------------------------------	NM_009931
	------------------------------------------------------------------------------	NM_001106366
	------------------------------------------------------------------------------	NM_000090
	------------------------------------------------------------------------------	NM_031163
	------------------------------------------------------------------------------	NM_131292
	------------------------------------------------------------------------------	NM_009929
	------------------------------------------------------------------------------	NM_001083844
	------------------------------------------------------------------------------	NM_130445
	------------------------------------------------------------------------------	NM_007741
	------------------------------------------------------------------------------	NM_012929
	------------------------------------------------------------------------------	NM_031362
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003090
	------------------------------------------------------------------------------	NM_000393
	------------------------------------------------------------------------------	NM_007739
	------------------------------------------------------------------------------	NM_030582
	------------------------------------------------------------------------------	NM_001101980
	------------------------------------------------------------------------------	NM_030582
	------------------------------------------------------------------------------	NM_152888
	------------------------------------------------------------------------------	NM_033150
	------------------------------------------------------------------------------	NM_021110
	------------------------------------------------------------------------------	NM_212528
	------------------------------------------------------------------------------	NM_001844
	------------------------------------------------------------------------------	NM_000090
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003090
	------------------------------------------------------------------------------	NM_031366
	------------------------------------------------------------------------------	NM_007046
	------------------------------------------------------------------------------	NM_173465
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001076831
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001076831
	------------------------------------------------------------------------------	NM_001107100
	------------------------------------------------------------------------------	NM_001108675
	------------------------------------------------------------------------------	NM_130445
	------------------------------------------------------------------------------	NM_031365
	------------------------------------------------------------------------------	NM_009925
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_053304
	------------------------------------------------------------------------------	NM_009929
	------------------------------------------------------------------------------	NM_007734
	------------------------------------------------------------------------------	NM_032085
	------------------------------------------------------------------------------	NM_198711
	------------------------------------------------------------------------------	NM_001858
	------------------------------------------------------------------------------	NM_001031818
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087352
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011005
	------------------------------------------------------------------------------	NM_001046199
	------------------------------------------------------------------------------	NM_205305
	------------------------------------------------------------------------------	NM_001005153
	------------------------------------------------------------------------------	NM_001078794
	------------------------------------------------------------------------------	NM_001083388
	------------------------------------------------------------------------------	NM_001094868
	------------------------------------------------------------------------------	NM_001095843
	------------------------------------------------------------------------------	NM_001097192
	------------------------------------------------------------------------------	NM_001100433
	------------------------------------------------------------------------------	NM_203905
	------------------------------------------------------------------------------	NM_204164
	------------------------------------------------------------------------------	NM_204790
	------------------------------------------------------------------------------	NM_214509
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_203889
	------------------------------------------------------------------------------	NM_001087352
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003187
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_174520
	------------------------------------------------------------------------------	NM_001034039
	------------------------------------------------------------------------------	NM_001087791
	------------------------------------------------------------------------------	NM_203889
	------------------------------------------------------------------------------	NM_214511
	------------------------------------------------------------------------------	NM_001011005
	------------------------------------------------------------------------------	NM_001105433
	------------------------------------------------------------------------------	NM_001011005
	------------------------------------------------------------------------------	NM_001087652
	------------------------------------------------------------------------------	NM_214509
	------------------------------------------------------------------------------	NM_001109991
	------------------------------------------------------------------------------	NM_007735
	------------------------------------------------------------------------------	NM_199214
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_053356
	------------------------------------------------------------------------------	NM_001109991
	------------------------------------------------------------------------------	NM_000089
	------------------------------------------------------------------------------	NM_007735
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007742
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_059691
	------------------------------------------------------------------------------	NM_001101980
	------------------------------------------------------------------------------	NM_010731
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009930
	------------------------------------------------------------------------------	NM_174634
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000090
	------------------------------------------------------------------------------	NM_029838
	------------------------------------------------------------------------------	NM_067581
	------------------------------------------------------------------------------	NM_001113515
	------------------------------------------------------------------------------	NM_000494
	------------------------------------------------------------------------------	NM_000088
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000088
	------------------------------------------------------------------------------	NM_001025721
	------------------------------------------------------------------------------	NM_001080091
	------------------------------------------------------------------------------	NM_001122918
	------------------------------------------------------------------------------	NM_001122918
	------------------------------------------------------------------------------	NM_001123230
	------------------------------------------------------------------------------	NM_009929
	------------------------------------------------------------------------------	NM_009929
	------------------------------------------------------------------------------	NM_080809
	------------------------------------------------------------------------------	NM_080805
	------------------------------------------------------------------------------	NM_007740
	------------------------------------------------------------------------------	NM_005203
	------------------------------------------------------------------------------	NM_080681
	------------------------------------------------------------------------------	NM_001003090
	------------------------------------------------------------------------------	NM_001027492
	------------------------------------------------------------------------------	NM_080801
	------------------------------------------------------------------------------	NM_001079992
	------------------------------------------------------------------------------	NM_004370
	------------------------------------------------------------------------------	NM_073501
	------------------------------------------------------------------------------	NM_080800
	------------------------------------------------------------------------------	NM_080803
	------------------------------------------------------------------------------	NM_080812
	------------------------------------------------------------------------------	NM_001039630
	------------------------------------------------------------------------------	NM_182968
	------------------------------------------------------------------------------	NM_080798
	------------------------------------------------------------------------------	NM_080680
	------------------------------------------------------------------------------	NM_080804
	------------------------------------------------------------------------------	NM_009936
	------------------------------------------------------------------------------	NM_080808
	------------------------------------------------------------------------------	NM_080799
	------------------------------------------------------------------------------	NM_152888
	------------------------------------------------------------------------------	NM_001093327
	------------------------------------------------------------------------------	NM_204426
	------------------------------------------------------------------------------	NM_001005153
	------------------------------------------------------------------------------	NM_001087652
	------------------------------------------------------------------------------	NM_001006951
	------------------------------------------------------------------------------	NM_001079250
	------------------------------------------------------------------------------	NM_001081764
	------------------------------------------------------------------------------	NM_001082901
	------------------------------------------------------------------------------	NM_181382
	------------------------------------------------------------------------------	NM_001109991
	------------------------------------------------------------------------------	NM_001081764
	------------------------------------------------------------------------------	NM_001104040
	------------------------------------------------------------------------------	NM_168120
	------------------------------------------------------------------------------	NM_168121
	------------------------------------------------------------------------------	NM_001079401
	------------------------------------------------------------------------------	NM_080802
	------------------------------------------------------------------------------	NM_080630
	------------------------------------------------------------------------------	NM_001113224
	------------------------------------------------------------------------------	NM_080806
	------------------------------------------------------------------------------	NM_059687
	------------------------------------------------------------------------------	NM_080679
	------------------------------------------------------------------------------	NM_028266
	------------------------------------------------------------------------------	NM_080807
	------------------------------------------------------------------------------	NM_009925
	------------------------------------------------------------------------------	NM_009926
	------------------------------------------------------------------------------	NM_031365
	------------------------------------------------------------------------------	NM_080645
	------------------------------------------------------------------------------	NM_080813
	------------------------------------------------------------------------------	NM_080810
	------------------------------------------------------------------------------	NM_080815
	------------------------------------------------------------------------------	NM_080811
	------------------------------------------------------------------------------	NM_080814
	------------------------------------------------------------------------------	NM_068868
	------------------------------------------------------------------------------	NM_007731
	------------------------------------------------------------------------------	NM_031362
	------------------------------------------------------------------------------	NM_000493
	------------------------------------------------------------------------------	NM_000092
	------------------------------------------------------------------------------	NM_000091
	------------------------------------------------------------------------------	NM_001079992
	------------------------------------------------------------------------------	NM_012929
	------------------------------------------------------------------------------	NM_001124177
	------------------------------------------------------------------------------	NM_001124206
	------------------------------------------------------------------------------	NM_181789
	------------------------------------------------------------------------------	NM_001001135
	------------------------------------------------------------------------------	NM_001130103
cbriggsae	((((((((.((.((..((......((((((((.....)))))))).....)))).)).)))).)))).	0.990 -22.40

cbriggsae

chromosome:chrI_random:1104203:1104270:1

Opposite_strand|Intronic_coding|NM_000091|COL4A3 ## Same_strand|Intronic_coding|NM_001003090|COL1A1 ## Same_strand|Intronic_non-coding|NM_059691|C15A11.7 ## Opposite_strand|Intronic_non-coding|NM_010731|Zbtb7a ## {Repeats: no}

block1899 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.475	no	no	0.32/0.32	19/19/0.00	0.0	0.0	1	0	1	0	26	3	5arm	1	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------------UCUUUAA--------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------TTCTTTAATGTCCAGTTGT---------------------------------------------------	19	1
cbriggsae	attccagaagctcaattaatctttgcTTCTTTAATGTCCAGTTGTagcagtagtacaaaaaagcccaaaagaggaaaaattttaacggggtcggaa
	************************************************************************************************
	----------------------------------------------------------------------------------------------------------	NM_123965
	----------------------------------------------------------------------------------------------------------	NM_024349
	----------------------------------------------------------------------------------------------------------	NM_008091
	----------------------------------------------------------------------------------------------------------	NM_019034
	----------------------------------------------------------------------------------------------------------	NM_001016369
	----------------------------------------------------------------------------------------------------------	NM_001032772
	----------------------------------------------------------------------------------------------------------	NM_001040602
	----------------------------------------------------------------------------------------------------------	NM_001093711
	----------------------------------------------------------------------------------------------------------	NM_001095157
	----------------------------------------------------------------------------------------------------------	NM_199692
	----------------------------------------------------------------------------------------------------------	NM_001033835
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047948
	----------------------------------------------------------------------------------------------------------	NM_175092
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065286
	----------------------------------------------------------------------------------------------------------	NM_001123190
	----------------------------------------------------------------------------------------------------------	NM_001126828
	----------------------------------------------------------------------------------------------------------	NM_001010953
	----------------------------------------------------------------------------------------------------------	NM_001127285
cbriggsae	.((((....((((..((((..(((.(((((((...((....((((.((....))))))....))...)))))))..)))..))))..)))).))))	0.810 -15.70

cbriggsae

chromosome:chrIV:633150:633245:-1

Opposite_strand|Intronic_coding|NM_123965|ARAC2 ## Opposite_strand|Intronic_non-coding|NM_024349|Ak1 ## Same_strand|Intronic_coding|NM_001047948|LOC499584 ## Same_strand|Intronic_non-coding|NM_065286|Y53G8AR.6 ## {Repeats: no}

block4244 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.035	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	32	7	5arm	1	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------CUUUGAA---------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------CCTTTGAACAGTCAGTGCTAG--------------------------------------------------------------	21	1
cbriggsae	ggtaagttttttatcaaatgcttctgaacctcCCTTTGAACAGTCAGTGCTAGctgtatcagaaatacgatcagctggcctttccgttcatggttgaaggcgatgagcgctactt
	*******************************************************************************************************************
cbriggsae	(((.(((..((((((....((((...((((......(((((....((.((((((((.(((........)))))))))))))....))))).))))..)))))))))).)))))).	0.780 -30.30

cbriggsae

chromosome:chrV:15993492:15993606:1

{Repeats: no}

block293 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.100	no	no	0.45/0.45	22/22/1.00	0.0	0.0	1	0	1	0	17	16	5arm	1	nd	0.27	2	1	1	na	na

		reads	miRBase family seed
seed	------------------AUUUGCU---------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------GATTTGCTTCTCAAGTGCTTCC-------------------------------------------------------------------------------	22	1
cbriggsae	gagacttcctccaagtcGATTTGCTTCTCAAGTGCTTCCcgcattccgatatgaatcgaacttttctgaatcggcggctcaggaagcttgatttttggcagaattggacagtgttttt
	**********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_060137
	--------------------------------------------------------------------------------------------------------------------------------	NM_001122952
	--------------------------------------------------------------------------------------------------------------------------------	NM_001088550
	--------------------------------------------------------------------------------------------------------------------------------	NM_010905
	--------------------------------------------------------------------------------------------------------------------------------	NM_001122953
	--------------------------------------------------------------------------------------------------------------------------------	NM_011543
	--------------------------------------------------------------------------------------------------------------------------------	NM_001087250
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001025922
	<<<<<<<<<<------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_001047242
cbriggsae	(((((....(((((.....((((((..((((..((((((.((...(((((..(((........)))...)))))..))...)))))))))).....)))))).)))))....))))).	0.960 -31.60

cbriggsae

chromosome:chrI:3236458:3236575:1

block4578 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.626	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	0	13	3arm	1	nd	0.10	1	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------AGUAGGU-------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------------GAGTAGGTGGCAATTCAAGCG	21	1
cbriggsae	gcgttcgagttttataggtgagattattaacggtgaaaagaggtggacttctttcaaataGAGTAGGTGGCAATTCAAGCG
	*********************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_003107
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011438
cbriggsae	.((((.(((((((((........(((((.....((.(((((((....))))))))).....))))))))).))))).))))	0.420 -12.80

cbriggsae

chromosome:chrX:13763250:13763330:-1

Same_strand|Intronic_non-coding|NM_003107|SOX4 ## {Repeats: no}

block4538 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.791	no	no	0.68/0.68	19/19/0.00	0.0	0.0	3	0	1	0	2	9	5arm	2	nd	0.32	3	3	1	na	na

		reads	miRBase family seed
seed	---ACCAAGC----------------------------------------------------------	3	novel
		len	cloning frequencies
			AF16
	--CACCAAGCGTCCGCCCAGT-----------------------------------------------	19	3
cbriggsae	gcCACCAAGCGTCCGCCCAGTcaacggtgaaatggaaatcccagtgaaagtggagtcgatcgaggagg
	********************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_005235
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_174363
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001042599
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001092457
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_203998
	------------------------------------------------------------------------------	NM_001006317
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001045879
cbriggsae	.((.((...((((.(((((.(((..((.((........))))..)))...))).)).)).)).)).))	0.930 -14.60

cbriggsae

chromosome:chrX:12286728:12286795:-1

Same_strand|Intronic_non-coding|NM_005235|ERBB4 ## Same_strand|Intronic_coding|NM_001092457|MGC82829 ## Opposite_strand|Intronic_non-coding|NM_001006317|NFRKB ## {Repeats: no}

block3597 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.603	no	no	0.45/0.45	22/22/1.00	0.0	0.0	1	0	1	0	22	14	3arm	8	nd	0.41	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------CCAGCUA------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------------------TCCAGCTAGTGTGTGGTAGAAT----------------------	22	1
cbriggsae	tagagtcggcgaagaagataaactaaaatgcaagtggtgtctcgggtgtgtagctgtccttatccgatggcaatTCCAGCTAGTGTGTGGTAGAATgctttactcgtctcgatgataa
	**********************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------------	NM_202770
cbriggsae	((..((((((((.((((.....(((..(((((((((((((((((((((............))))))).))))...))).))..)))))..)))....))))..))))..))))..)).	0.980 -27.90

cbriggsae

chromosome:chrUn:6593330:6593447:1

Opposite_strand|Intronic_coding|NM_202770|AT4G01985 ## {Repeats: no}

block3605 [novel_lenNOK_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.300	no	no	0.44/0.44	18/18/0.00	0.0	0.0	1	0	1	0	24	-2	5arm_loop	1	nd	0.22	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------UUCUUGA--------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------GTTCTTGAACACGTGTAC----------------------------------------------------------	18	1
cbriggsae	ggcgcattctcagaagtgccgtccGTTCTTGAACACGTGTACacaaggacacgacgatgttccacaagactggccatccacttctccacaattacagctc
	****************************************************************************************************
cbriggsae	(((........(((((((....(((.((((((((((((((........)))))....)))))...)))).))).....)))))))...........))).	0.670 -21.81

cbriggsae

chromosome:chrUn:6894367:6894466:1

{Repeats: no}

block4514 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.156	no	no	0.39/0.39	18/18/0.00	0.0	0.0	1	0	1	0	6	6	3arm	7	nd	0.56	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------AAUUGAC----------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------CAATTGACACTGAAGAAC------	18	1
cbriggsae	cactcccggctttagagaaaagaagacacaacgaaatttaaaattagttgtcCAATTGACACTGAAGAACtgagtg
	****************************************************************************
	--------------------------------------------------------------------------------------	NM_001018425
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001081263
cbriggsae	(((((....((((((....((......(((((..............)))))....))....))))))....)))))	0.940 -12.94

cbriggsae

chromosome:chrX:10519930:10520005:-1

Opposite_strand|Intronic_coding|NM_001018425|byr1 ## Same_strand|Intronic_non-coding|NM_001081263|Slc44a5 ## {Repeats: no}

block2710 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.497	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	37	-2	5arm_loop	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------GAGGUGA---------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------AGAGGTGAGTGATGAGTAGAT--------------------------------------------------------------	21	1
cbriggsae	tctcttatagattttggccggttctttgatcgaaaacAGAGGTGAGTGATGAGTAGATattgctggatcaggtggcttatgtttcggagtcgaagtgttaattgggaatgggtttgggat
	************************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------------	NM_172632
	----------------------------------------------------------------------------------------------------------------------------------	NM_001007257
	----------------------------------------------------------------------------------------------------------------------------------	NM_001027635
	----------------------------------------------------------------------------------------------------------------------------------	NM_199501
	----------------------------------------------------------------------------------------------------------------------------------	NM_012231
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_133288
	----------------------------------------------------------------------------------------------------------------------------------	NM_001087019
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001032790
	----------------------------------------------------------------------------------------------------------------------------------	NM_015866
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020367
	----------------------------------------------------------------------------------------------------------------------------------	NM_001046756
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_012963
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011241
	----------------------------------------------------------------------------------------------------------------------------------	NM_001044304
cbriggsae	((((..((..((((...((((((((((((((((((...(((.((..((((.(((((...)))))..))))..)).)))...)))))..)))))))....))))))))))..))..)))).	0.960 -24.80

cbriggsae

chromosome:chrIV:10329967:10330086:1

Opposite_strand|Intronic_non-coding|NM_172632|Mapk4 ## Opposite_strand|Intronic_coding|NM_001007257|PRDM2 ## Same_strand|Intronic_coding|NM_133288|Atp2b3 ## Same_strand|Intronic_non-coding|NM_020367|PARP11 ## {Repeats: no}

block3372 [novel_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.461	no	no	0.55/0.55	22/22/1.00	0.0	0.0	1	0	1	0	2	17	5arm	15	nd	0.23	3	1	1	na	na

		reads	miRBase family seed
seed	---UUUCGAG----------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--GTTTCGAGTGTGTGTGCGCCTT--------------------------------------------------	22	1
cbriggsae	ccGTTTCGAGTGTGTGTGCGCCTTtaaccccttcgtggcgagacctcaacgatagggcgcgcttgcacgaaggg
	**************************************************************************
cbriggsae	((.(((...(((((.(((((((((........((((...((....)).)))).))))))))).)))))))).))	0.470 -24.60

cbriggsae

chromosome:chrUn:879455:879528:1

{Repeats: no}

block2910 [novel_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.307	no	no	0.30/0.30	20/20/1.00	0.0	0.0	1	0	1	0	12	-3	3arm_loop	1	nd	0.25	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------AUGAUAC------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------TATGATACAACTTTTGGAAG------------	20	1
cbriggsae	ttgggaaatgtttatttaaaaactgttcttgcaaTATGATACAACTTTTGGAAGacaaattttcaa
	******************************************************************
cbriggsae	.((..((.(((((.(((((((..(((((.........)).)))..))))))))))))..))..)).	0.850 -8.80

cbriggsae

chromosome:chrIV_random:536809:536874:1

{Repeats: no}

block1741 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.357	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	6	8	5arm	1	nd	0.37	4	1	1	na	na

		reads	miRBase family seed
seed	-------AAUACUG------------------------------------------------------------	1	miR-236
		len	cloning frequencies
			AF16
	------GAATACTGGATGTGCTTCT-------------------------------------------------	19	1
cbriggsae	agaggcGAATACTGGATGTGCTTCTcaatttcctacttcctggccctagtccagccatctccattgtcagtttc
	**************************************************************************
	------------------------------------------------------------------------------------	NM_181277
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001088088
	------------------------------------------------------------------------------------	NM_001066926
	------------------------------------------------------------------------------------	NM_001105288
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007393
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068288
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_059518
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_122291
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067241
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001021511
	------------------------------------------------------------------------------------	NM_001130548
	-------------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_067437
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001044899
	-------------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_067438
cbriggsae	.(((((..(((.((((.(((((.........((........)).........))).)).)))).)))..)))))	0.970 -13.47

cbriggsae

chromosome:chrIII:7980384:7980457:1

Opposite_strand|Intronic_coding|NM_181277|Col14a1 ## Same_strand|Intronic_non-coding|NM_001088088|LOC397919 ## Same_strand|Intronic_coding|NM_068288|E03H12.5 ## {Repeats: no}

block4428 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.100	no	no	0.30/0.30	20/20/1.00	0.0	0.0	1	0	1	0	1	25	5arm	5	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	--AAAGUUU------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-GAAAGTTTGGTAAAAGAAAG------------------------------------------------------------------------	20	1
cbriggsae	tGAAAGTTTGGTAAAAGAAAGcattttccttcagatttacagtgatttttctttcacgtcactgagattttctttttcttcttaatttttcag
	*********************************************************************************************
	-------------------------------------------------------------------------------------------------------	NM_001105250
	-------------------------------------------------------------------------------------------------------	NM_004796
	-------------------------------------------------------------------------------------------------------	NM_138970
	-------------------------------------------------------------------------------------------------------	NM_001087279
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007496
	-------------------------------------------------------------------------------------------------------	NM_001080396
	-------------------------------------------------------------------------------------------------------	NM_007736
	-------------------------------------------------------------------------------------------------------	NM_001092981
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090075
	-------------------------------------------------------------------------------------------------------	NM_001087789
	-------------------------------------------------------------------------------------------------------	NM_001079250
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008591
	-------------------------------------------------------------------------------------------------------	NM_030706
cbriggsae	((((((...((.(((((((..............(((((.(((((((...........)))))))))))))))))))....))....)))))).	0.440 -14.53

cbriggsae

chromosome:chrX:5610005:5610097:-1

Opposite_strand|Intronic_non-coding|NM_001105250|NRXN3 ## Same_strand|Intronic_non-coding|NM_007496|Zfhx3 ## Opposite_strand|Intronic_coding|NM_007736|Col4a5 ## Same_strand|Intronic_coding|NM_001090075|MGC69046 ## {Repeats: no}

block3257 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.070	no	no	0.68/0.68	22/22/1.00	0.0	0.0	2	0	1	0	16	12	5arm	1	nd	0.23	2	2	1	na	na

		reads	miRBase family seed
seed	-----------------ACGACCG---------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	----------------GACGACCGCCGAGTCGGTGACA-------------------------------------------------------------------------	22	2
cbriggsae	tggtgagatcggctttGACGACCGCCGAGTCGGTGACAagaccgtccacttttcggttggtggcatggatctcgtgtccggctctttggtgggtactacgattctcctcga
	***************************************************************************************************************
cbriggsae	.((.(((((((......((..((((((((((((..((.((((((((((((........))))).)))).))).))..)))))))...)))))))....)))).))).))..	0.990 -42.10

cbriggsae

chromosome:chrUn:5017654:5017764:-1

{Repeats: no}

block2667 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.949	no	no	0.45/0.45	20/20/1.00	0.0	0.0	1	0	1	0	8	13	5arm	1	nd	0.30	3	1	1	na	na

		reads	miRBase family seed
seed	---------GUCAAGC------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------TGTCAAGCAGTTGGAATTGG------------------------------------------------------------------	20	1
cbriggsae	gcgattatTGTCAAGCAGTTGGAATTGGatgttcgaattctatgattctcggaattgaaccaaattttttgtactcatttgaatgaaatatacg
	**********************************************************************************************
	--------------------------------------------------------------------------------------------------------	NM_066961
	--------------------------------------------------------------------------------------------------------	NM_064619
	--------------------------------------------------------------------------------------------------------	NM_001057621
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068392
cbriggsae	.((..((((.(((((.(((.((((((....((((.((((((.........))))))))))..))))))....)))..)))))....))))..))	0.560 -11.90

cbriggsae

chromosome:chrIV:8751142:8751235:1

Opposite_strand|Intronic_non-coding|NM_066961|W09D10.4 ## Same_strand|Intronic_coding|NM_068392|elo-5 ## {Repeats: no}

block3946 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.097	no	no	0.50/0.63	21/27/0.90	0.0	0.3	7	0	1	0	15	-7	3arm	20	nd	0.48	6	10	1	na	na

		reads	miRBase family seed
seed	-------------------------------------CCUUAGG------------------------------	7	novel
seed	---------------------------------------------CGCUGGU----------------------	1	novel
seed	-----------------------------------------AGGUCGC--------------------------	1	novel
seed	----------------------------------------UAGGUCG---------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------TCCTTAGGTCGCTGGTTCGAATC---------------	23	5
	------------------------------------TCCTTAGGTCGCTGGTTCGAAT----------------	22	2
	----------------------------------------TAGGTCGCTGGTTCGAATCCG-------------	21	1
	---------------------------------------TTAGGTCGCTGGTTCGAATCCG-------------	22	1
	--------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA---	27	1
cbriggsae	agttggtagagcggaggactgtagagtcagtgggcaTCCTTAGGTCGCTGGTTCGAATCcggctcgacggattt
	**************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028815
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_170227
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001114052
cbriggsae	((((.((.((((...(((.....((..((((.(((........)))))))..))...))).)))).)).)))).	0.980 -22.70

cbriggsae

chromosome:chrV:780120:780193:1

Same_strand|Intronic_coding|NM_001028815|F56H9.6 ## {Repeats: no}

sblock51 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.099	no	no	0.36/0.64	18/28/0.40	0.0 0.8 0.3	0.0 0.2 0.0	1 8 24	0 0 0	1 1 1	0 0 0	3 15 2	5 -13 9	5arm 5arm_loop_3arm 3arm	7 7 7	nd nd nd	0.35 0.36 0.45	3 4 6	48	1	4	3

		reads	miRBase family seed
seed	-------------------------------------------UCCUGGA-------------	20	novel
seed	------------------------------------------AUCCUGG--------------	10	novel
seed	-----------------UACUUGG---------------------------------------	4	novel
seed	----------------------------------GCCUGGG----------------------	3	novel
seed	-------------------CUUGGAU-------------------------------------	2	novel
seed	----------------GUACUUG----------------------------------------	2	novel
seed	------------------ACUUGGA--------------------------------------	2	novel
seed	-----------------------------------------AAUCCUG---------------	1	novel
seed	----------------------------------------GAAUCCU----------------	1	novel
seed	-------------------------------------UGGGAAU-------------------	1	novel
seed	----UGAGUCC----------------------------------------------------	1	novel
seed	------------------------------------CUGGGAA--------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------ATCCTGGATGTTGTAAGCT--	19	17
	-----------------------------------------AATCCTGGATGTTGTAAGCT--	20	7
	----------------GTACTTGGATCGGAGACGGCCTGGG----------------------	25	4
	---------------------------------GGCCTGGGAATCCTGGATGTTGTAAGCT--	28	3
	------------------------------------------ATCCTGGATGTTGTAAGCTT-	20	2
	------------------ACTTGGATCGGAGACGGCCTGG-----------------------	22	2
	---------------AGTACTTGGATCGGAGACGGCCTGGG----------------------	26	2
	-----------------------------------CCTGGGAATCCTGGATGTTGTAAGCT--	26	1
	-----------------------------------------AATCCTGGATGTTGTAAG----	18	1
	----------------------------------------GAATCCTGGATGTTGTAAGCT--	21	1
	-----------------------------------------AATCCTGGATGTTGTAAGCTT-	21	1
	---TTGAGTCCAGTTAGTACTTG----------------------------------------	20	1
	---------------------------------------GGAATCCTGGATGTTGTAAGCT--	22	1
	-----------------TACTTGGATCGGAGACGGCCTGG-----------------------	23	1
	-----------------------------------------AATCCTGGATGTTGTAAGCTTT	22	1
	------------------------------------------ATCCTGGATGTTGTAAGCTTT	21	1
	-----------------TACTTGGATCGGAGACGGCCTG------------------------	22	1
	------------------------------------CTGGGAATCCTGGATGTTGTAAGCT--	25	1
cbriggsae	acgttgagtccagttagtacttggatcggagacggcctgggAATCCTGGATGTTGTAAGCTtt
	***************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<....................................	NM_170601
cbriggsae	(((....((((((...((.(((((..((....))..))))).)).))))))..))).......	0.990 -17.60

cbriggsae

chromosome:chrUn:4857886:4857948:-1

Opposite_strand|Boundary_non-coding|NM_170601|SIAE ## Opposite_strand|Exonic_non-coding|NM_170601|SIAE ## {Repeats: no}

block102 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.147	no	no	0.41/0.41	27/27/0.00	0.0	0.0	1	0	1	0	2	3	5arm	1	nd	0.26	2	1	1	na	na

		reads	miRBase family seed
seed	---CAACGAC------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--GCAACGACGATTGAGAGACCAAATATT-----------------------------------------	27	1
cbriggsae	aaGCAACGACGATTGAGAGACCAAATATTgcggtcaacgcaaatctggagattttagtttttattccttt
	**********************************************************************
	--------------------------------------------------------------------------------	NM_026450
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001093227
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001024290
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_175692
	--------------------------------------------------------------------------------	NM_001087652
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001071291
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001078787
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001109774
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001114303
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001114304
	--------------------------------------------------------------------------------	NM_001089360
	--------------------------------------------------------------------------------	NM_059581
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_121223
	--------------------------------------------------------------------------------	NM_115574
	--------------------------------------------------------------------------------	NM_021399
	--------------------------------------------------------------------------------	NM_001079883
	--------------------------------------------------------------------------------	NM_001853
	--------------------------------------------------------------------------------	NM_000393
cbriggsae	(((.((.((.((((((((..(((.((.(((((.....))))))).)))...)))))))).)).)).))).	1.000 -13.40

cbriggsae

chromosome:chrI:4032650:4032719:-1

Opposite_strand|Intronic_non-coding|NM_026450|Zfp169 ## Same_strand|Intronic_coding|NM_001093227|MGC80275 ## Same_strand|Intronic_non-coding|NM_001024290|Gal3st3 ## Opposite_strand|Intronic_coding|NM_001087652|col18sv-a ## {Repeats: no}

block3596 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.661	no	no	0.39/0.39	23/23/1.00	0.0	0.0	1	0	1	0	31	-4	3arm_loop	1	nd	0.57	4	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------UGAUGAC----------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------------GTGATGACATGTTCGAGTTTGTT-------------------------------	23	1
cbriggsae	atatataatgcgaacttcagagagtgaacctaccaaccaGTGATGACATGTTCGAGTTTGTTctgtaaagtagaatttttgtattgatgtgtg
	*********************************************************************************************
	-------------------------------------------------------------------------------------------------------	NM_202770
cbriggsae	(((((((((((((((((...((((..(((..((....((....))....))....)))..))))...)))).......)))))))).))))).	0.400 -14.71

cbriggsae

chromosome:chrUn:6571213:6571305:1

Opposite_strand|Intronic_coding|NM_202770|AT4G01985 ## {Repeats: no}

block1925 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.974	no	no	0.50/0.50	22/22/1.00	0.0	0.0	1	0	1	0	6	11	5arm	2	nd	0.23	4	1	1	na	na

		reads	miRBase family seed
seed	-------UUUCGAA--------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------CTTTCGAAGTTCAACTGGCTCC------------------------------------------------------------------	22	1
cbriggsae	gccagcCTTTCGAAGTTCAACTGGCTCCgcagttttgggacgtgctggaatctctgatcggaacaatgctctgttgacaagtggaactgatgct
	**********************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182297
	--------------------------------------------------------------------------------------------------------	NM_005650
	--------------------------------------------------------------------------------------------------------	NM_181492
cbriggsae	(((((..(((((....(((((.((((((((((.(((.((.....)).)))...)))..)))).....)))..)))))....))))))))..)).	0.450 -19.60

cbriggsae

chromosome:chrIV:1231607:1231700:-1

Same_strand|Intronic_non-coding|NM_182297|B0546.4 ## Opposite_strand|Intronic_non-coding|NM_005650|TCF20 ## {Repeats: no}

block1202 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.067	no	no	0.72/0.72	25/25/0.00	0.0	0.0	1	0	1	0	3	22	5arm	4	nd	0.40	3	1	1	na	na

		reads	miRBase family seed
seed	----GACCGAG------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---CGACCGAGCGTCCGTGCCAAGCGCT-------------------------------------------------------------------------	25	1
cbriggsae	cggCGACCGAGCGTCCGTGCCAAGCGCTgcgtcgccaggggtctccggtcggaaggctggcggtcccgggcgcataaggagtggtgcacggctcagggccg
	*****************************************************************************************************
cbriggsae	((((..((((((...(((((...((.((..((((((.((((((.((((((....)))))).)))))).)))).))..)).))...))))))))).))))))	0.990 -51.80

cbriggsae

chromosome:chrII_random:181228:181328:1

{Repeats: no}

sblock53 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.099	no	no	0.36/0.64	18/28/0.40	0.0 0.8 0.3	0.0 0.2 0.0	1 8 24	0 0 0	1 1 1	0 0 0	3 15 2	5 -13 9	5arm 5arm_loop_3arm 3arm	7 7 7	nd nd nd	0.35 0.36 0.45	3 4 6	48	1	4	3

		reads	miRBase family seed
seed	-------------------------------------------UCCUGGA-------------	20	novel
seed	------------------------------------------AUCCUGG--------------	10	novel
seed	-----------------UACUUGG---------------------------------------	4	novel
seed	----------------------------------GCCUGGG----------------------	3	novel
seed	-------------------CUUGGAU-------------------------------------	2	novel
seed	----------------GUACUUG----------------------------------------	2	novel
seed	------------------ACUUGGA--------------------------------------	2	novel
seed	-----------------------------------------AAUCCUG---------------	1	novel
seed	----------------------------------------GAAUCCU----------------	1	novel
seed	-------------------------------------UGGGAAU-------------------	1	novel
seed	----UGAGUCC----------------------------------------------------	1	novel
seed	------------------------------------CUGGGAA--------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------ATCCTGGATGTTGTAAGCT--	19	17
	-----------------------------------------AATCCTGGATGTTGTAAGCT--	20	7
	----------------GTACTTGGATCGGAGACGGCCTGGG----------------------	25	4
	---------------------------------GGCCTGGGAATCCTGGATGTTGTAAGCT--	28	3
	------------------------------------------ATCCTGGATGTTGTAAGCTT-	20	2
	------------------ACTTGGATCGGAGACGGCCTGG-----------------------	22	2
	---------------AGTACTTGGATCGGAGACGGCCTGGG----------------------	26	2
	-----------------------------------CCTGGGAATCCTGGATGTTGTAAGCT--	26	1
	-----------------------------------------AATCCTGGATGTTGTAAG----	18	1
	----------------------------------------GAATCCTGGATGTTGTAAGCT--	21	1
	-----------------------------------------AATCCTGGATGTTGTAAGCTT-	21	1
	---TTGAGTCCAGTTAGTACTTG----------------------------------------	20	1
	---------------------------------------GGAATCCTGGATGTTGTAAGCT--	22	1
	-----------------TACTTGGATCGGAGACGGCCTGG-----------------------	23	1
	-----------------------------------------AATCCTGGATGTTGTAAGCTTT	22	1
	------------------------------------------ATCCTGGATGTTGTAAGCTTT	21	1
	-----------------TACTTGGATCGGAGACGGCCTG------------------------	22	1
	------------------------------------CTGGGAATCCTGGATGTTGTAAGCT--	25	1
cbriggsae	acgttgagtccagttagtacttggatcggagacggcctgggAATCCTGGATGTTGTAAGCTtt
	***************************************************************
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<....................................	NM_170601
cbriggsae	(((....((((((...((.(((((..((....))..))))).)).))))))..))).......	0.990 -17.60

cbriggsae

chromosome:chrUn:5166254:5166316:-1

Opposite_strand|Boundary_non-coding|NM_170601|SIAE ## Opposite_strand|Exonic_non-coding|NM_170601|SIAE ## {Repeats: no}

block326 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.042	no	no	0.39/0.39	18/18/0.00	0.0	0.0	1	0	1	0	6	9	5arm	1	nd	0.28	2	1	1	na	na

		reads	miRBase family seed
seed	-------CUUGUUG------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------GCTTGTTGATTGCTGTAT--------------------------------------------------	18	1
cbriggsae	gtttgaGCTTGTTGATTGCTGTATaaagattccaaaaggaatttttgatgctcgtttttattcatgcgcttgcg
	**************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_013927
cbriggsae	((....((.((.(((..((.(((((((((((((....)))))))))).)))..))..)))..)).))....)).	0.980 -17.10

cbriggsae

chromosome:chrI:5791030:5791103:1

Same_strand|Intronic_non-coding|NM_013927|Cngb3 ## {Repeats: no}

block2868 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.316	no	no	0.48/0.48	25/25/0.00	0.0	0.0	1	0	1	0	5	2	3arm	1	nd	0.32	2	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------UUUGAUC----------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------GTTTGATCTGGGTTACGGTAGTTGC-----	25	1
cbriggsae	cactgaacttcgttccgcttttttgccactacatatgGTTTGATCTGGGTTACGGTAGTTGCattga
	*******************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075117
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061879
	-----------------------------------------------------------------------------	NM_067650
cbriggsae	((.((((((((((((((..((...((((.......))))..))..))))..)))).)))).)).)).	1.000 -13.10

cbriggsae

chromosome:chrIV_random:166157:166223:-1

Same_strand|Intronic_non-coding|NM_075117|Y59A8B.22 ## Opposite_strand|Intronic_non-coding|NM_067650|Y104H12D.3 ## {Repeats: no}

block591 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.568	no	no	0.35/0.35	23/23/1.00	0.0	0.0	1	0	1	0	3	6	5arm	2	nd	0.30	3	1	1	na	na

		reads	miRBase family seed
seed	----AUGUUCU--------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---AATGTTCTATGTAGCTGTTAGTC-----------------------------------------------------------	23	1
cbriggsae	tggAATGTTCTATGTAGCTGTTAGTCgtgtcacctctttgaaaggacttcatttggctggattgcatacaaacaagataattttc
	*************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075282
	-----------------------------------------------------------------------------------------------	NM_011794
cbriggsae	((..((((...((.((((((..((((...(((......)))...)))).....)))))).)).)))).))...............	0.900 -14.10

cbriggsae

chromosome:chrII:2278975:2279059:-1

Same_strand|Intronic_non-coding|NM_075282|wrs-1 ## Opposite_strand|Intronic_non-coding|NM_011794|Bpnt1 ## {Repeats: no}

block539 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.025	no	no	0.30/0.30	20/20/1.00	0.0	0.0	1	0	1	0	0	39	3arm	5	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------------AAAGUUU------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------------------------------GAAAGTTTGGTAAAAGAAAG	20	1
cbriggsae	tttctgaggccgtattcatgaacatttacttttaggtaaatagaacgtgtaaatgatttataaagaggaaaatagagtgattggtattcatGAAAGTTTGGTAAAAGAAAG
	***************************************************************************************************************
	-------------------------------------------------------------------------------------------------------------------------	NM_001027735
	-------------------------------------------------------------------------------------------------------------------------	NM_001027736
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001012569
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001030387
cbriggsae	(((((...((((..((((((((((.(((((((.......(((((.(((....))).)))))............))))))).))...))))))))....))))...))))).	0.650 -21.91

cbriggsae

chromosome:chrI_random:2445151:2445261:1

Opposite_strand|Intronic_non-coding|NM_001027735|feh-1 ## Same_strand|Intronic_non-coding|NM_001012569|AMD1 ## {Repeats: no}

block262 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.220	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	12	8	3arm	49	nd	0.30	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------CGUUCGU------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------GCGTTCGTGGTGTAATGGTC------------	20	1
cbriggsae	gcggccaggcgcggcggcagccaccgcaatatgtacgccttggaagcttagaacatagcgtGCGTTCGTGGTGTAATGGTCagcatggatgcc
	*********************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	-------------------------------------------------------------------------------------------------------	NM_199320
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_014333
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001098517
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061553
	-------------------------------------------------------------------------------------------------------	NM_067080
cbriggsae	(((.(((.((..(((..((..((((((...((((((((..((...........))..))))))))..))))))...))))).)).))).))).	0.540 -33.60

cbriggsae

chromosome:chrI:1372473:1372565:1

block195 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.095	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	11	0	3arm	5	nd	0.43	4	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------UUGAGAU------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------GTTGAGATGGTAGTTAACAGT-----------	21	1
cbriggsae	gaaccgtgactgctatgcaacccttggctccttccGTTGAGATGGTAGTTAACAGTggattggttca
	*******************************************************************
	-----------------------------------------------------------------------------	NM_067080
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_004098
cbriggsae	((((((...(((((..((.(((((..((.......))..))..))).))....)))))..)))))).	0.990 -19.40

cbriggsae

chromosome:chrI:9350765:9350831:-1

Opposite_strand|Intronic_coding|NM_067080|Y66D12A.21 ## Same_strand|Intronic_non-coding|NM_004098|EMX2 ## {Repeats: no}

block58 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.073	no	no	0.70/0.70	20/20/1.00	0.0	0.0	1	0	1	0	18	13	3arm	1	nd	0.15	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------ACCACCA------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------------AACCACCAGGCTGGGGCGAG------------------	20	1
cbriggsae	catctacaatattatttttcagtattggtcgtcaagctccggatgccgacacaaagtcggactcacggAACCACCAGGCTGGGGCGAGttcaatgtgttgtgaatg
	**********************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_174569
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_174283
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_002035
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_177366
	--------------------------------------------------------------------------------------------------------------------	NM_001107428
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_053878
	--------------------------------------------------------------------------------------------------------------------	NM_008665
cbriggsae	(((.((((((((.((((((((((.(((((.((.....((((((..(((((.....)))))..)).)))))).)))))))))))..)))).....)))))))).)))	0.940 -31.50

cbriggsae

chromosome:chrI:2075475:2075580:-1

block3774 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.250	no	no	0.30/0.30	23/23/1.00	0.0	0.0	1	0	1	0	11	3	3arm	1	nd	0.26	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------UAUGCUU--------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------GTATGCTTCATTATCTTATTCAC-----------	23	1
cbriggsae	tgaagttgaccaataagatacgaaatgaaatggataaaaatatGTATGCTTCATTATCTTATTCACaagaattttat
	*****************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001082367
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001082235
	---------------------------------------------------------------------------------------	NM_005334
cbriggsae	(((((((....(((((((((....((((((((.(((....))).)))..))))))))))))))......))))))).	1.000 -10.10

cbriggsae

chromosome:chrV:9348163:9348239:-1

Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_coding|NM_001082367|ROCK1 ## Opposite_strand|Intronic_non-coding|NM_005334|HCFC1 ## {Repeats: no}

block1609 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.246	no	no	0.41/0.41	22/22/1.00	0.0	0.0	1	0	1	0	1	32	5arm	1	nd	0.41	4	1	1	na	na

		reads	miRBase family seed
seed	--UCUUUCA------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-ATCTTTCAACGCCTTCAAGAAC----------------------------------------------------------------------------------	22	1
cbriggsae	cATCTTTCAACGCCTTCAAGAACtccatcccattctggaatgttcgttcgtctcggcaacggtccctcgacgtcttctagaatcggttcttcgccacgatgatgc
	*********************************************************************************************************
	-------------------------------------------------------------------------------------------------------------------	NM_061083
	-------------------------------------------------------------------------------------------------------------------	NM_065151
	-------------------------------------------------------------------------------------------------------------------	NM_001011629
	-------------------------------------------------------------------------------------------------------------------	NM_001061149
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001010845
	-------------------------------------------------------------------------------------------------------------------	NM_212962
	-------------------------------------------------------------------------------------------------------------------	NM_061083
	-------------------------------------------------------------------------------------------------------------------	NM_061083
	-------------------------------------------------------------------------------------------------------------------	NM_063966
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061817
	-------------------------------------------------------------------------------------------------------------------	NM_061817
	-------------------------------------------------------------------------------------------------------------------	NM_065067
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064950
	-------------------------------------------------------------------------------------------------------------------	NM_065222
	-------------------------------------------------------------------------------------------------------------------	NM_068002
	-------------------------------------------------------------------------------------------------------------------	NM_067633
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067597
	-------------------------------------------------------------------------------------------------------------------	NM_001027705
	-------------------------------------------------------------------------------------------------------------------	NM_182229
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065232
cbriggsae	((((..((...((....(((((((.......(((((((((....((.(((..(((....))).....)))))..))))))))).))))))).))...)).)))).	0.850 -22.70

cbriggsae

chromosome:chrIII:1112268:1112372:1

Opposite_strand|Intronic_coding|NM_061083|clec-114 ## Opposite_strand|Intronic_non-coding|NM_065151|W04B5.3 ## Same_strand|Intronic_non-coding|NM_001010845|ACSM2A ## Same_strand|Intronic_coding|NM_065232|F56F11.2 ## {Repeats: no}

block98 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.524	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	15	8	5arm	49	nd	0.25	2	1	1	na	na

		reads	miRBase family seed
seed	----------------CGUUCGU------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------GCGTTCGTGGTGTAATGGTC------------------------------------------------------------------	20	1
cbriggsae	tgtctctgtttcgccGCGTTCGTGGTGTAATGGTCagcatggatgccttccaagcacacaggccaggcgcgactgctggataacgggcgaacgccggggcg
	*****************************************************************************************************
	---------------------------------------------------------------------------------------------------------------	NM_026450
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_175692
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001037394
	---------------------------------------------------------------------------------------------------------------	NM_001087652
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_104594
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031795
	---------------------------------------------------------------------------------------------------------------	NM_115574
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001124041
	---------------------------------------------------------------------------------------------------------------	NM_001853
	---------------------------------------------------------------------------------------------------------------	NM_057771
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001031386
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001026315
cbriggsae	.(((((.((((((((.((((.((.((((..(((((.((.((((.....)))).)).....))))).)))).))........)))))))))).)).))))).	0.700 -36.90

cbriggsae

chromosome:chrI:3748060:3748160:-1

block1941 [novel_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.057	no	no	0.35/0.35	20/20/1.00	0.0	0.0	1	0	1	0	36	-1	3arm	1	nd	0.20	1	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------ACAUUGG------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------TACATTGGCAGGATATACAT------------------------------------	20	1
cbriggsae	attccagtttcattaaggtttcaagtttatgtggtaatctgacaaagtaaTACATTGGCAGGATATACATataaaaaaactaccatgactcgaattttatggaatc
	**********************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------	NM_075433
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075433
cbriggsae	((((((..(((.(((.(((......(((((((((((.((((.(((.((...)).))).)))).))).))))))))......))).)))...))).....)))))).	0.980 -21.00

cbriggsae

chromosome:chrIV:1366714:1366819:-1

Opposite_strand|Intronic_coding|NM_075433|srt-45 ## Same_strand|Intronic_coding|NM_075433|srt-45 ## {Repeats: no}

block2901 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.897	no	no	0.33/0.33	21/21/1.00	0.0	0.0	1	0	1	0	11	6	3arm	1	nd	0.29	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------UCCCUCA------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------TTCCCTCATTTTTTAGTTGTG-----------	21	1
cbriggsae	tgccgttacagatgcagcgtatagactgatcggttaagcaaagtttagTTCCCTCATTTTTTAGTTGTGttacattcgct
	********************************************************************************
cbriggsae	.((.......((((((((....(((.(((..((.(((((...)))))...)).))).)))...))))))))......)).	0.990 -11.32

cbriggsae

chromosome:chrIV_random:439856:439935:1

{Repeats: no}

block1985 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.812	no	no	0.29/0.29	21/21/1.00	0.0	0.0	2	0	1	0	19	-2	5arm_loop	1	nd	0.48	4	2	1	na	na

		reads	miRBase family seed
seed	--------------------UAUAUUG------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	-------------------TTATATTGATCTAGCTTTTGG-----------------------------------	21	2
cbriggsae	gttgtttatttgatgttgaTTATATTGATCTAGCTTTTGGaaaaatggttttcttggtcacaaaaaactggtggc
	***************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070351
	-------------------------------------------------------------------------------------	NM_182271
cbriggsae	((..((..(((..((.((((((....((...(((((((....))).)))).)).))))))))..)))..))..))	0.810 -10.00

cbriggsae

chromosome:chrIV:2126104:2126178:-1

Same_strand|Intronic_non-coding|NM_070351|LLC1.2 ## Opposite_strand|Intronic_coding|NM_182271|K02E7.4 ## {Repeats: no}

block152 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.680	no	no	0.35/0.35	20/20/1.00	0.0	0.0	1	0	1	0	10	9	3arm	1	nd	0.40	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------UGCAACU----------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------TTGCAACTTAGGTATGAATG----------	20	1
cbriggsae	agaactatggttgttttttttctgtttcagtgatgaaatttacaatatttaatactattttcctcgaTTGCAACTTAGGTATGAATGacgatttcta
	*************************************************************************************************
	-----------------------------------------------------------------------------------------------------------	NM_001087279
	-----------------------------------------------------------------------------------------------------------	NM_001099171
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_176035
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205985
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205986
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_102365
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001084127
cbriggsae	((((..((.((..(((..(((..(((.((((((.((((....................)))).)).)))).)))..)))...)))..)).)))))).	0.800 -12.45

cbriggsae

chromosome:chrI:7961992:7962088:-1

Opposite_strand|Intronic_non-coding|NM_001087279|fbxl5 ## Same_strand|Intronic_coding|NM_176035|nAcRalpha-34E ## {Repeats: no}

block1912 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.780	no	no	0.50/0.50	20/20/1.00	0.0	0.0	2	0	1	0	21	4	5arm	1	nd	0.50	3	2	1	na	na

		reads	miRBase family seed
seed	----------------------CCUUGUG------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	---------------------TCCTTGTGATACACCCGATG------------------------------------------	20	2
cbriggsae	tagtcgatttaattactctaaTCCTTGTGATACACCCGATGagttttcccaactattaatgacactgaaatgagtgatgactg
	***********************************************************************************
	---------------------------------------------------------------------------------------------	NM_061817
	---------------------------------------------------------------------------------------------	NM_008091
	---------------------------------------------------------------------------------------------	NM_199692
cbriggsae	(((((......(((((((...((...(((...((...(((.((((.....)))))))..)).))).))...))))))))))))	0.490 -10.40

cbriggsae

chromosome:chrIV:905385:905467:-1

Opposite_strand|Intronic_non-coding|NM_061817|cct-3 ## {Repeats: no}

block1866 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.566	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	17	2	3arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------GACAGAU------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------AGACAGATAAGCATGATTTCG-----------------	21	1
cbriggsae	tttctaattttgcgaccgcgtagctcgaactgtttgacgtcccacctcctttttAGACAGATAAGCATGATTTCGagaaagattaaagaaga
	********************************************************************************************
	------------------------------------------------------------------------------------------------------	NM_001034977
cbriggsae	(((((((((((.(((...(((.(((....((((((((...............))))))))...))))))...)))...))))))..))))).	0.890 -16.36

cbriggsae

chromosome:chrIII_random:577691:577782:-1

Opposite_strand|Intronic_non-coding|NM_001034977|pi4kb ## {Repeats: no}

block1090 [novel_shortStem_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.006	no	no	0.59/0.59	22/22/1.00	0.0	0.0	1	0	1	0	4	4	3arm	1	nd	0.18	2	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------CUGGAUU------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------GCTGGATTGGCTTTGGATCGGG----	22	1
cbriggsae	tcgtttgatggtcctggtcttggtccagcaggttgcttcctcGCTGGATTGGCTTTGGATCGGGgcgg
	********************************************************************
	------------------------------------------------------------------------------	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001044671
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_177366
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001084509
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061557
	------------------------------------------------------------------------------	NM_020988
cbriggsae	.((((...((((((.((((...((((((((((......))).))))))).))))..)))))).)))).	0.990 -29.70

cbriggsae

chromosome:chrII:13811335:13811402:1

Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_non-coding|NM_001044671|MAF ## Same_strand|Intronic_coding|NM_061557|rog-1 ## {Repeats: no}

block3684 [novel_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.461	no	no	0.55/0.55	22/22/1.00	0.0	0.0	1	0	1	0	2	17	5arm	15	nd	0.23	3	1	1	na	na

		reads	miRBase family seed
seed	---UUUCGAG----------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--GTTTCGAGTGTGTGTGCGCCTT--------------------------------------------------	22	1
cbriggsae	ccGTTTCGAGTGTGTGTGCGCCTTtaaccccttcgtggcgagacctcaacgatagggcgcgcttgcacgaaggg
	**************************************************************************
	------------------------------------------------------------------------------------	NM_077734
	------------------------------------------------------------------------------------	NM_071252
	------------------------------------------------------------------------------------	NM_071278
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071230
	------------------------------------------------------------------------------------	NM_074797
cbriggsae	((.(((...(((((.(((((((((........((((...((....)).)))).))))))))).)))))))).))	0.470 -24.60

cbriggsae

chromosome:chrV:3791547:3791620:-1

Opposite_strand|Intronic_coding|NM_077734|str-123 ## Same_strand|Intronic_coding|NM_071230|Y19D10B.2 ## {Repeats: no}

block5260 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.552	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	4	0	3arm	1	nd	0.20	2	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------AGUCGAG----------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------GAGTCGAGGTAGTCAATGAC----	20	1
cbriggsae	tttgggttgatcactttccagaaatcgtacggctccaaatacttcataGAGTCGAGGTAGTCAATGACaagc
	************************************************************************
cbriggsae	((((.(((((..((((.............((((((.............))))))))))..)))))..)))).	0.770 -12.83

cbriggsae

chromosome:chrX:20317523:20317594:1

{Repeats: no}

block4888 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.200	no	no	0.35/0.35	20/20/1.00	0.0	0.0	1	0	1	0	14	13	3arm	1	nd	0.45	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------AAUAACG--------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------TAATAACGTGCTTTTGAACC--------------	20	1
cbriggsae	cgcaagttctcagaaatcatgtgtatcgttttacagggcggttcttcagcgactttgaagatttcgtTAATAACGTGCTTTTGAACCtcagtgaactttgt
	*****************************************************************************************************
	---------------------------------------------------------------------------------------------------------------	NM_153821
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_125756
	---------------------------------------------------------------------------------------------------------------	NM_204793
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_079593
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_169386
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_176459
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001016575
	---------------------------------------------------------------------------------------------------------------	NM_001085944
cbriggsae	.((((((((...((..(((...(((.((((......(((((.(((((((.....)))))))..)))))...)))))))...)))...))...)))))).))	0.880 -22.90

cbriggsae

chromosome:chrX:6618777:6618877:1

Opposite_strand|Intronic_non-coding|NM_153821|Prrx1 ## Same_strand|Intronic_coding|NM_125756|HEN3 ## Same_strand|Intronic_non-coding|NM_079593|pros ## {Repeats: no}

block138 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.891	no	no	0.42/0.42	26/26/0.00	0.0	0.0	1	0	1	0	22	-2	5arm_loop	1	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------CAAACAA----------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------GCAAACAATCACGTCGAATATTGGTC----------------------------------------------------	26	1
cbriggsae	cattatttctagatgacaacacGCAAACAATCACGTCGAATATTGGTCttatcccaaattggcaatgggcggtttttttcggtttacacatggaaaagtg
	****************************************************************************************************
	--------------------------------------------------------------------------------------------------------------	NM_001087279
	--------------------------------------------------------------------------------------------------------------	NM_177732
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007732
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214466
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199473
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_073882
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007740
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_152890
	--------------------------------------------------------------------------------------------------------------	NM_001081345
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087019
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001001458
	--------------------------------------------------------------------------------------------------------------	NM_069710
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_211230
	--------------------------------------------------------------------------------------------------------------	NM_001021292
cbriggsae	((((.((((((..((..(((.((.((((..(((.(((((...((((.......)))).)))))..)))...))))....)))))..))..))))))))))	0.810 -15.30

cbriggsae

chromosome:chrI:7165238:7165337:-1

Opposite_strand|Intronic_non-coding|NM_001087279|fbxl5 ## Same_strand|Intronic_coding|NM_007732|Col17a1 ## Opposite_strand|Intronic_coding|NM_001081345|Chd2 ## Same_strand|Intronic_non-coding|NM_001087019|nr2f2 ## {Repeats: no}

sblock84 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.26/0.40	19/21/0.56	0.0 0.7	0.0 0.7	3 3	0 0	1 1	0 0	10 23	25 12	5arm 3arm	14 14	nd nd	0.15 0.21	1 3	9	1	-13	-14

		reads	miRBase family seed
seed	-----------GAAUAAG------------------------------------------------------------------------------------------------------	5	novel
seed	-----------------------------------------------------------------------------GAAUAAG------------------------------------	2	novel
seed	------------AAUAAGU-----------------------------------------------------------------------------------------------------	1	novel
seed	-------------------------------------------------------------------------------AUAAGUA----------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------GGAATAAGTAGTACCAATGG------------------------------------------------------------------------------------------	20	3
	----------------------------------------------------------------------------GGAATAAGTAGTACCAATA-------------------------	19	2
	----------GGAATAAGTAGTACCAATG-------------------------------------------------------------------------------------------	19	1
	------------------------------------------------------------------------------AATAAGTAGTACCAATATG-----------------------	19	1
	-----------GAATAAGTAGTACCAATGGT-----------------------------------------------------------------------------------------	20	1
	----------GGAATAAGTAGTACCAATGGT-----------------------------------------------------------------------------------------	21	1
cbriggsae	ctacttactcGGAATAAGTAGTACCAATGGtactacttactcggaataagtagtaccaattcgatactactcactcGGAATAAGTAGTACCAATAtggtactaattactcggaataagta
	************************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------------	NM_011978
cbriggsae	.((((((.((.((.(((.((((((((.((((((((((((.((.((...(((((((.........)))))))...)).)).))))))))))))...)))))))).))).)).)).))))))	1.000 -48.10

cbriggsae

chromosome:chrX:14750625:14750744:1

Opposite_strand|Intronic_non-coding|NM_011978|Slc27a2 ## {SimpF: trf}

block3486 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.365	no	no	0.19/0.19	21/21/1.00	0.0	0.0	1	0	1	0	35	2	3arm	3	nd	0.29	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------UUUUAAA------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------ATTTTAAAATGTTTACTTGTG-----------------------------------	21	1
cbriggsae	ttagataattttaagagatgatgttttggtactatagaataatttagcttaatagtttATTTTAAAATGTTTACTTGTGgtgtaaaagaaatttagagctttaaaatttattta
	******************************************************************************************************************
cbriggsae	.(((((((.(((.((((.(((..((((..((((((((((((.(((((..(((....)))..))))).)))))...)))))))..))))....)))...)))).))).)))))))	0.970 -16.30

cbriggsae

chromosome:chrUn:4251605:4251718:1

{Repeats: no}

block1691 [novel_shortStem_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.200	no	no	0.35/0.35	20/20/1.00	0.0	0.0	1	0	1	0	1	-1	5arm_loop	1	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	--AUGGGUG---------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-AATGGGTGGAAAAGAAATGT---------------------------------------	20	1
cbriggsae	gAATGGGTGGAAAAGAAATGTatacatgaaataaaagaagactattggccgccggcattc
	************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066813
	----------------------------------------------------------------------	NM_127796
	----------------------------------------------------------------------	NM_134696
	----------------------------------------------------------------------	NM_134696
	----------------------------------------------------------------------	NM_018785
	----------------------------------------------------------------------	NM_012760
	----------------------------------------------------------------------	NM_026275
	----------------------------------------------------------------------	NM_066760
	----------------------------------------------------------------------	NM_066759
	----------------------------------------------------------------------	NM_001129239
cbriggsae	((((((((((..((...(((....))).................))..)))))..)))))	0.470 -9.45

cbriggsae

chromosome:chrIII:5066011:5066070:1

Same_strand|Intronic_non-coding|NM_066813|R10E12.2 ## Opposite_strand|Intronic_non-coding|NM_127796|ATUBP4 ## Opposite_strand|Intronic_coding|NM_134696|CG2839 ## {Repeats: no}

block3819 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.943	no	no	0.32/0.32	19/19/0.00	0.0	0.0	1	0	1	0	11	7	3arm	1	nd	0.32	2	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------AAAUGGG----------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------------AAAATGGGTTCTATGTATG-----------	19	1
cbriggsae	cagtgaagatggttatgtttaaaaattgaaactacgtaaggtgactgtgaaaatgttacAAAATGGGTTCTATGTATGctactttttga
	*****************************************************************************************
	---------------------------------------------------------------------------------------------------	NM_001011629
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070507
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001022613
	---------------------------------------------------------------------------------------------------	NM_007842
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047733
	---------------------------------------------------------------------------------------------------	NM_001298
	---------------------------------------------------------------------------------------------------	NM_001056446
	---------------------------------------------------------------------------------------------------	NM_001066295
	---------------------------------------------------------------------------------------------------	NM_001066297
	---------------------------------------------------------------------------------------------------	NM_137186
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_003299
	---------------------------------------------------------------------------------------------------	NM_212567
	---------------------------------------------------------------------------------------------------	NM_001079878
	...................................................................................<<<<<<<<<<<<<<<<	NM_074284
cbriggsae	(((.((((.(((((((((.........(((....(((...(((((.((....)))))))...)))..))).))))).))))))))))).	0.690 -10.60

cbriggsae

chromosome:chrV:11753253:11753341:-1

Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_non-coding|NM_070507|Y105C5B.19 ## Same_strand|Intronic_coding|NM_001022613|SPBC215.13 ## Opposite_strand|Intronic_coding|NM_007842|Dhx9 ## Opposite_strand|UTR_non-coding|NM_074284|T01C3.1 ## {Repeats: no}

block3471 [novel_Multihit_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.012	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	1	16	3arm	47	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------UAAUGGU--------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------GTAATGGTCAGCATGGATGCC-	21	1
cbriggsae	ggcagccgccgcgatatgtacaccttgttagtttatgttgaacgtgggcgttcgtggtGTAATGGTCAGCATGGATGCCt
	********************************************************************************
cbriggsae	((((.(((..(((((...((((((.((...(((((((.....)))))))...)).))))))...))).)).))).)))).	1.000 -30.50

cbriggsae

chromosome:chrUn:4078064:4078143:1

{Repeats: no}

block51 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.664	no	no	0.33/0.33	24/24/1.00	0.0	0.0	1	0	1	0	0	25	5arm	1	nd	0.29	3	1	1	na	na

		reads	miRBase family seed
seed	-UUGUCUG-----------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	GTTGTCTGCCAGAATAAATTCAAT-------------------------------------------------------------------	24	1
cbriggsae	GTTGTCTGCCAGAATAAATTCAATaggaagtcttagaaaatcgaagtgtataggtccgcacattggtccattgaaaagtactaatagatga
	*******************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_057259
	-----------------------------------------------------------------------------------------------------	NM_057282
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008855
	-----------------------------------------------------------------------------------------------------	NM_061553
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067080
cbriggsae	.(((((((..((.((...((((((.(((............((((.((((........)))).)))))))))))))..)).))..)))))))	0.570 -13.70

cbriggsae

chromosome:chrI:1514838:1514928:-1

Same_strand|Intronic_non-coding|NM_057259|l(2)37Cc ## Opposite_strand|Intronic_non-coding|NM_057282|RpLP1 ## Same_strand|Intronic_coding|NM_067080|Y66D12A.21 ## {Repeats: no}

block4720 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.698	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	17	1	5arm	1	nd	0.10	2	1	1	na	na

		reads	miRBase family seed
seed	------------------UGGAUUG--------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------GTGGATTGTACGCAGGGATAG-------------------------------------------------------	21	1
cbriggsae	cgatgatcccttgttttGTGGATTGTACGCAGGGATAGagaagtttgtctcgatgcagacggaatgtttcacaaaatcggccgatgcttattg
	*********************************************************************************************
	-------------------------------------------------------------------------------------------------------	NM_203923
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001111199
	-------------------------------------------------------------------------------------------------------	NM_001030661
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003666
cbriggsae	((((((((.((.((((((((((((((..(((((((((((....))))))))..)))..)))).....)))))))))).))..))...))))))	0.630 -20.40

cbriggsae

chromosome:chrX:18759447:18759539:-1

Opposite_strand|Intronic_non-coding|NM_203923|abcb4 ## Same_strand|Intronic_non-coding|NM_001111199|zgc:173710 ## Same_strand|Intronic_coding|NM_001003666|Zfp457 ## {Repeats: no}

block4107 [novel_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.278	no	no	0.65/0.65	20/20/1.00	0.0	0.0	1	0	1	0	1	-4	3arm_loop	5	nd	0.40	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------GUUCGAG-------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------AGTTCGAGCCTGGCATGGGG-	20	1
cbriggsae	gtctatagggcatgccaaggtcgccAGTTCGAGCCTGGCATGGGGc
	**********************************************
	--------------------------------------------------------	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_115403
	--------------------------------------------------------	NM_023868
	--------------------------------------------------------	NM_001087279
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087279
	--------------------------------------------------------	NM_141224
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214496
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079883
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_021399
	--------------------------------------------------------	NM_001036
	--------------------------------------------------------	NM_009109
	--------------------------------------------------------	NM_001001534
	--------------------------------------------------------	NM_001042723
	--------------------------------------------------------	NM_072352
	--------------------------------------------------------	NM_001082762
	--------------------------------------------------------	NM_001101718
	--------------------------------------------------------	NM_001102571
	--------------------------------------------------------	NM_057643
	--------------------------------------------------------	NM_057644
	--------------------------------------------------------	NM_057645
	--------------------------------------------------------	NM_057646
	--------------------------------------------------------	NM_206874
	--------------------------------------------------------	NM_001082757
	--------------------------------------------------------	NM_177652
	--------------------------------------------------------	NM_001035
	--------------------------------------------------------	NM_000540
	--------------------------------------------------------	NM_032078
cbriggsae	..........((((((.((((((......))).)))))))))....	0.930 -15.50

cbriggsae

chromosome:chrV:10108769:10108814:1

Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_non-coding|NM_115403|AT3G55450 ## Opposite_strand|Intronic_coding|NM_023868|Ryr2 ## Same_strand|Intronic_coding|NM_214496|dlp ## {Repeats: no}

block1259 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.414	no	no	0.33/0.33	18/18/0.00	0.0	0.0	1	0	1	0	11	16	3arm	1	nd	0.33	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------AUAUCCA---------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------------------------TATATCCATGTTACTGAC-----------	18	1
cbriggsae	ggttgaaaacttaaaaagtgataggaattccaaaaattactgtttcaaaattctcattaagcatttcctggattttgaagattgcTATATCCATGTTACTGACaaaactttacc
	******************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------	NM_171402
	----------------------------------------------------------------------------------------------------------------------------	NM_171401
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001102902
	----------------------------------------------------------------------------------------------------------------------------	NM_023042
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065190
	----------------------------------------------------------------------------------------------------------------------------	NM_001104714
	----------------------------------------------------------------------------------------------------------------------------	NM_001082042
	----------------------------------------------------------------------------------------------------------------------------	NM_001011581
cbriggsae	(((.............((((((((((((..(((.........(((((((((((................))))))))))).)))..)).))).)))))))...........)))	0.580 -16.44

cbriggsae

chromosome:chrIII:116271:116384:-1

Opposite_strand|Intronic_coding|NM_171402|C09G4.2 ## Same_strand|Intronic_non-coding|NM_001102902|LOC100124966 ## Opposite_strand|Intronic_non-coding|NM_023042|Recql ## {Repeats: no}

block2377 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.339	no	no	0.45/0.45	20/20/1.00	0.0	0.0	2	0	1	0	20	2	3arm	1	nd	0.25	3	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------UUGACAU--------------------------------	2	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------TTTGACATTGGCAGGAATCG--------------------	20	2
cbriggsae	aatgtttttgatgtttcaatttctagagttaaccagtagttgtgtttcaaaatcaaTTTGACATTGGCAGGAATCGaaattgatttctagaccatt
	************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070458
	----------------------------------------------------------------------------------------------------------	NM_182297
cbriggsae	((((.(((.((....((((((((..((.((..(((((.((((.(((........))).)))))))))...)).))))))))))..)).))).))))	0.650 -14.70

cbriggsae

chromosome:chrIV:1118135:1118230:1

Same_strand|Intronic_non-coding|NM_070458|Y73F8A.24 ## Opposite_strand|Intronic_non-coding|NM_182297|B0546.4 ## {Repeats: no}

block3545 [novel_shortStem_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.002	no	no	0.57/0.57	21/21/1.00	0.0	0.0	1	0	1	0	4	11	5arm	2	nd	0.29	3	1	1	na	na

		reads	miRBase family seed
seed	-----UUCCGGU---------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----TTTCCGGTGCTGACTGGATGG--------------------------------------------------------	21	1
cbriggsae	aaagTTTCCGGTGCTGACTGGATGGcttcttgactcttcttgggcattttttgagaagttgttcgattaatctggaaattt
	*********************************************************************************
cbriggsae	.((((((((((...(((.((((..((((((((((((.....)))......)))))))))..)))).)))..))))))))))	1.000 -26.10

cbriggsae

chromosome:chrUn:5252103:5252183:1

{Repeats: no}

block4549 [novel_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.515	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	8	4	5arm	49	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	---------CGUUCGU------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------GCGTTCGTGGTGTAATGGTC------------------------------------	20	1
cbriggsae	gaaatccaGCGTTCGTGGTGTAATGGTCagcatggatgccttccaagcattcgacgggggttcg
	****************************************************************
	--------------------------------------------------------------------------	NM_001108848
	--------------------------------------------------------------------------	NM_136816
	--------------------------------------------------------------------------	NM_136816
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008260
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008499
cbriggsae	((.((((..((.(((.(((((..(((...(((....)))...))).)))))))))).)))))).	0.710 -16.80

cbriggsae

chromosome:chrX:12706324:12706387:-1

Opposite_strand|Intronic_non-coding|NM_001108848|Elavl1 ## Opposite_strand|Intronic_coding|NM_136816|Cpr47Ef ## Same_strand|Intronic_non-coding|NM_008260|Foxa3 ## {Repeats: no}

block636 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.989	no	no	0.35/0.35	20/20/1.00	0.0	0.0	1	0	1	0	14	3	5arm	1	nd	0.30	3	1	1	na	na

		reads	miRBase family seed
seed	---------------UACAGGA--------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------TTACAGGATAATGGGACAAA--------------------------------------------------------------	20	1
cbriggsae	gacaagatttaggtTTACAGGATAATGGGACAAAgaacaaagaagagatcacggaattcaggtccagttgtctcgatggaggggggggggggggtc
	************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_006287
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009829
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_201578
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001114006
cbriggsae	(((....(((.......(((((((((.((((...(((...................)))..)))).)))))))...))........)))....)))	0.480 -11.77

cbriggsae

chromosome:chrII:4479997:4480092:-1

Same_strand|Intronic_non-coding|NM_006287|TFPI ## Same_strand|Intronic_coding|NM_201578|psmd12 ## {Repeats: no}

block3623 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.016	no	no	0.42/0.42	24/24/1.00	0.0	0.0	1	0	1	0	14	0	3arm	1	nd	0.21	4	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------CUAUACU------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------------TCTATACTTTCTACCGGTCCAAGT--------------	24	1
cbriggsae	ggatgacctaaattttcgaaattttgataacaagaaagtaataatagaacattctcaccTCTATACTTTCTACCGGTCCAAGTtttgatgatcacca
	*************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001847
	-----------------------------------------------------------------------------------------------------------	NM_001028815
	-----------------------------------------------------------------------------------------------------------	NM_170227
	-----------------------------------------------------------------------------------------------------------	NM_001012945
	-----------------------------------------------------------------------------------------------------------	NM_001114052
	-----------------------------------------------------------------------------------------------------------	NM_001130158
	-----------------------------------------------------------------------------------------------------------	NM_012223
cbriggsae	((.(((......((.(((((((((.(((....((((((((....((((...........))))))))))))....))).))))))))).))))))).	0.900 -19.00

cbriggsae

chromosome:chrV:577081:577177:-1

Same_strand|Intronic_coding|NM_001847|COL4A6 ## Opposite_strand|Intronic_coding|NM_001028815|F56H9.6 ## Opposite_strand|Intronic_non-coding|NM_001012945|DNAJA1 ## {Repeats: no}

block5208 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.710	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	16	24	3arm	1	nd	0.32	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------AAUAAGC---------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------------AAATAAGCAAGAGGCAACG----------------	19	1
cbriggsae	ttttcgctttttagttgaaattgtatgttatgtgttccagacggtgaagagggaaagatctgatggttcaagaagagcgataAAATAAGCAAGAGGCAACGtgatcagtttgaagat
	*********************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_203923
cbriggsae	((((((((..(((((((...((((.((((.(((((((..(((.((..(((........))).)).)))......)))).))).)))).))))....)))).)))..)))..))))).	0.650 -19.70

cbriggsae

chromosome:chrX:18626548:18626664:1

Same_strand|Intronic_coding|NM_203923|abcb4 ## {Repeats: no}

block258 [novel_Multihit_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.853	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	0	18	3arm	49	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------CGUUCGU------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------------GCGTTCGTGGTGTAATGGTC	20	1
cbriggsae	tggctgcctccgcgctttgccgctagcttgtatacgacaaaacggcagtgctttcagtgtGCGTTCGTGGTGTAATGGTC
	********************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	------------------------------------------------------------------------------------------	NM_199320
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_014333
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001098517
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061553
	------------------------------------------------------------------------------------------	NM_067080
cbriggsae	.((((((..(((((...((((((((((((((...((......)))))).)))...)))).)))..))))).))...))))	0.730 -20.00

cbriggsae

chromosome:chrI:1368188:1368267:1

block4490 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.436	no	no	0.67/0.67	21/21/1.00	0.0	0.0	1	0	1	0	11	20	3arm	2	nd	0.19	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------------GUGGCCG------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------------------CGTGGCCGTGGAAGAGTGGCT-----------	21	1
cbriggsae	ttgtccttgtagaagatattcaaaagattatgccaagcgatcttcagaagtagcagcagcttcgactactctagcttcgtctggtggtCGTGGCCGTGGAAGAGTGGCTacagaagcaac
	************************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_129875
	----------------------------------------------------------------------------------------------------------------------------------	NM_007789
cbriggsae	((((..((((((....(((((......(((((((..((((((.(((((...(((((.((.........)))).)))...))))).))))))))).))))..))))).))))))..)))).	0.700 -31.00

cbriggsae

chromosome:chrX:9409221:9409340:-1

Same_strand|Intronic_non-coding|NM_129875|ARA4 ## Opposite_strand|Intronic_non-coding|NM_007789|Ncan ## {Repeats: no}

block1033 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.309	no	no	0.60/0.60	20/20/1.00	0.0	0.0	1	0	1	0	8	11	5arm	1	nd	0.30	3	1	1	na	na

		reads	miRBase family seed
seed	---------UCCUCCC---------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------TTCCTCCCTCTCCCTTTCGC---------------------------------------------------------	20	1
cbriggsae	ttacttggTTCCTCCCTCTCCCTTTCGCacggtcattcttgcaagaattcttgtgaaacccagtaagagttggtatttttggtga
	*************************************************************************************
cbriggsae	(((((.(((.((...((((..((((((((.((..(((((....))))))).))))))....))..))))..)).)))...)))))	0.990 -16.70

cbriggsae

chromosome:chrII:11672287:11672371:1

{Repeats: no}

block3043 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.775	no	no	0.45/0.45	22/22/1.00	0.0	0.0	1	0	1	0	20	-2	5arm_loop	5	nd	0.45	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------AAUAUCG-------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------GAATATCGAAACAACTGCCTCG-----------------------------------------------	22	1
cbriggsae	gatgccgtcccccgaagtccGAATATCGAAACAACTGCCTCGatgggcctggtcttctcgaagcactcggttcttctctggcgagaatc
	*****************************************************************************************
cbriggsae	(((..((((....((((.((((...((((....(((((((....))))..)))....)))).....))))..))))...))))...)))	0.690 -20.60

cbriggsae

chromosome:chrUn:2458642:2458730:-1

{Repeats: no}

block4449 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.501	no	no	0.44/0.44	18/18/0.00	0.0	0.0	1	0	1	0	29	-3	5arm_loop	2	nd	0.67	4	1	1	na	na

		reads	miRBase family seed
seed	------------------------------CUGUUAC--------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------TCTGTTACGGTTTCCTTG----------------------------------------	18	1
cbriggsae	gtttctggaacaagttctctagaatcggcTCTGTTACGGTTTCCTTGagcggtccattccaaagtcgtcgttgaacaaaccagttgc
	***************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_153821
	-------------------------------------------------------------------------------------------------	NM_125756
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_204793
	-------------------------------------------------------------------------------------------------	NM_079593
	-------------------------------------------------------------------------------------------------	NM_169386
	-------------------------------------------------------------------------------------------------	NM_176459
	-------------------------------------------------------------------------------------------------	NM_001016575
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001085944
cbriggsae	((..((((.....((((....((..(((((.((....((...((......)).))....)).)))))))...))))...))))..))	0.880 -18.00

cbriggsae

chromosome:chrX:6621070:6621156:-1

Same_strand|Intronic_non-coding|NM_153821|Prrx1 ## Opposite_strand|Intronic_coding|NM_125756|HEN3 ## Opposite_strand|Intronic_non-coding|NM_079593|pros ## {Repeats: no}

block268 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.272	no	no	0.50/0.53	19/22/0.50	0.0	1.5	2	0	1	0	15	14	3arm	1	nd	0.41	4	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------UCUCUGC-----------------------------	2	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------TTCTCTGCACACCATGGAC------------------	19	1
	----------------------------------------------------------------------TTCTCTGCACACCATGGACTGT---------------	22	1
cbriggsae	caagaatcgttgacgatgaagtacaggtctgaatatttttatcctctggagttactggatatctatattaTTCTCTGCACACCATGGACTGTcaaaatattttttgg
	***********************************************************************************************************
	---------------------------------------------------------------------------------------------------------------------	NM_057259
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_057282
	---------------------------------------------------------------------------------------------------------------------	NM_008855
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061553
	---------------------------------------------------------------------------------------------------------------------	NM_067080
cbriggsae	((((((...(((((((((..((.((((....(((((...(((((............)))))...)))))....)))).))..)))....)))))).....)))))).	0.960 -20.70

cbriggsae

chromosome:chrI:1517231:1517337:1

Opposite_strand|Intronic_non-coding|NM_057259|l(2)37Cc ## Same_strand|Intronic_non-coding|NM_057282|RpLP1 ## Opposite_strand|Intronic_coding|NM_067080|Y66D12A.21 ## {Repeats: no}

block1700 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.038	no	no	0.40/0.40	20/20/1.00	0.0	0.0	1	0	1	0	4	7	3arm	1	nd	0.30	3	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------UGUAAUU----------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------------------GTGTAATTGAAGCTATTGGC----	20	1
cbriggsae	attgccatttggaaatcgagattgctgtagggattggcttgtgggGTGTAATTGAAGCTATTGGCagta
	*********************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087791
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_203889
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007736
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080630
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001100911
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182968
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080630
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009932
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080629
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_032518
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_016919
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_016919
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007734
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001847
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031362
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_073308
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_153393
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001102607
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_131292
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_032085
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007741
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031365
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033641
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134452
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000093
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_027770
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001002979
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031366
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031366
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001032535
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001005153
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001082901
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214509
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205348
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001046199
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_027770
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079401
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090075
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_203905
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001006951
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001031818
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087652
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105288
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214509
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214510
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011005
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001088739
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214511
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_203905
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001095843
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001097192
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105289
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087789
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205021
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001086968
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205348
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214511
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079401
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_204790
	-------------------------------------------------------------------------------	NM_203889
	-------------------------------------------------------------------------------	NM_001090075
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001031818
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_204790
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031366
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083844
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_212528
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001022613
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007736
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033381
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001076831
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083844
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007742
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205334
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001856
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033381
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033380
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_152890
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_152890
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047235
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182968
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001854
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083844
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079992
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031365
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000494
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033380
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007732
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080629
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_021760
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009931
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001846
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_032085
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_198721
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000088
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_029838
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_015734
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007737
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064382
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001114038
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007735
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007738
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079992
	-------------------------------------------------------------------------------	NM_009930
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001106366
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001850
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007737
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_146007
	-------------------------------------------------------------------------------	NM_199214
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009928
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080680
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007735
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009931
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007738
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001106858
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009926
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001106858
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031362
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001852
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020351
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007734
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009930
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000393
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001113224
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_032888
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001854
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214466
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001101980
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000495
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000495
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000493
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000092
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000093
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000091
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000091
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083827
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083827
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079992
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122918
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001123230
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205334
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110340
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001001135
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001129326
	-------------------------------------------------------------------------------	NM_001026043
cbriggsae	(((((((..(((...((((...((((.((.((......)).)).))))...))))..))).))))))).	1.000 -16.80

cbriggsae

chromosome:chrIII:5613449:5613517:1

Same_strand|Intronic_coding|NM_001087791|col2a1b ## Same_strand|Intronic_non-coding|NM_182968|col1a2 ## Opposite_strand|Intronic_coding|NM_203889|col2a1 ## {Repeats: no}

block380 [novel_Multihit_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.252	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	4	4	5arm	49	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	-----CGUUCGU---------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----GCGTTCGTGGTGTAATGGTC---------------------------------	20	1
cbriggsae	atccGCGTTCGTGGTGTAATGGTCagcatggatgccttccaagcattcgacgggggt
	*********************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199320
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_060440
	-------------------------------------------------------------------	NM_059364
	-------------------------------------------------------------------	NM_001048720
	-------------------------------------------------------------------	NM_112954
cbriggsae	((((.((.(((.(((((..(((...(((....)))...))).)))))))))).))))	0.920 -17.60

cbriggsae

chromosome:chrI:8917087:8917143:1

Same_strand|Intronic_non-coding|NM_199320|PHF17 ## Same_strand|Intronic_coding|NM_060440|srt-62 ## Opposite_strand|Intronic_coding|NM_059364|T27A3.2 ## {Repeats: no}

block882 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.568	no	no	0.35/0.35	23/23/1.00	0.0	0.0	1	0	1	0	3	6	5arm	2	nd	0.30	3	1	1	na	na

		reads	miRBase family seed
seed	----AUGUUCU--------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---AATGTTCTATGTAGCTGTTAGTC-----------------------------------------------------------	23	1
cbriggsae	tggAATGTTCTATGTAGCTGTTAGTCgtgtcacctctttgaaaggacttcatttggctggattgcatacaaacaagataattttc
	*************************************************************************************
	-----------------------------------------------------------------------------------------------	NM_075282
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011794
	-----------------------------------------------------------------------------------------------	NM_062385
cbriggsae	((..((((...((.((((((..((((...(((......)))...)))).....)))))).)).)))).))...............	0.900 -14.10

cbriggsae

chromosome:chrII:2309291:2309375:1

Opposite_strand|Intronic_non-coding|NM_075282|wrs-1 ## Same_strand|Intronic_non-coding|NM_011794|Bpnt1 ## Opposite_strand|Intronic_coding|NM_062385|twk-2 ## {Repeats: no}

block5131 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.061	no	no	0.60/0.60	20/20/1.00	0.0	0.0	1	0	1	0	26	5	5arm	1	nd	0.15	1	1	1	na	na

		reads	miRBase family seed
seed	---------------------------GCCGAUG--------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------TGCCGATGTCGGCTTGGGTT--------------------------------------------------------------------	20	1
cbriggsae	ttttataaatcctccgacgagagccgTGCCGATGTCGGCTTGGGTTgtaccatctcgaaatccggctataaccaggtccacatctgcattgatctgtatcgtaggttcatggag
	******************************************************************************************************************
cbriggsae	.(((((.((.(((.(((..(((...((((.(((((.(((((.(((((((((............)).)))))))))))).))))).))))...)))...))).))))).))))).	0.470 -34.40

cbriggsae

chromosome:chrX:15341197:15341310:1

{Repeats: no}

block3462 [novel_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.477	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	29	-2	5arm_loop	3	nd	0.14	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------GUGUUGG---------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------AGTGTTGGCATTTTTCGTTGT--------------------------------------------------------------	21	1
cbriggsae	ctgggttttgagcagcccgcatctcattcAGTGTTGGCATTTTTCGTTGTgaagcaaatgaattgacaggtgccggcggagcagaaatttgatgagaagagctggaccacgg
	****************************************************************************************************************
cbriggsae	(((((((.....((((.....(((((.(((((((((((((((((((((........)))))).....)))))))))))..........)))))))))...)))))))).)))	0.520 -29.30

cbriggsae

chromosome:chrUn:3863542:3863653:1

{Repeats: no}

block838 [novel_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	29	4	3arm	1	nd	0.24	4	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------AAUUUUC------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------GAATTTTCGGAATTTTAGGGC-----------------------------	21	1
cbriggsae	taaacaaaccttcattagtagagctttttctgagaaaattctggaaaaattcaGAATTTTCGGAATTTTAGGGCgatatataaatctaatggggttaatttaa
	*******************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122953
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	-----------------------------------------------------------------------------------------------------------------	NM_001044671
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122952
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010905
	-----------------------------------------------------------------------------------------------------------------	NM_177366
	-----------------------------------------------------------------------------------------------------------------	NM_075132
	-----------------------------------------------------------------------------------------------------------------	NM_008091
	-----------------------------------------------------------------------------------------------------------------	NM_001084509
cbriggsae	((((..((((.(((((((((..(((((((((((((..((((((((....))))))))))))))))....)))))..)).......)))))))))))..)))).	0.980 -26.41

cbriggsae

chromosome:chrII:13600557:13600659:-1

Same_strand|Intronic_non-coding|NM_001122953|Nfia ## Opposite_strand|Intronic_non-coding|NM_001044671|MAF ## {Repeats: no}

block1758 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.122	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	7	21	5arm	3	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	--------UUGAAAA------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------ATTGAAAATCGGTCAACGCAT-----------------------------------------------------------------------------------	21	1
cbriggsae	tttaaaaATTGAAAATCGGTCAACGCATgccggagttatggtccattgaaaatcgaaaaatcgatgcatcgtaaaagggttgtaaacgatcggaattgtcatcatttaaat
	***************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001092591
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_177186
	-------------------------------------------------------------------------------------------------------------------------	NM_001030661
	-------------------------------------------------------------------------------------------------------------------------	NM_001027534
	-------------------------------------------------------------------------------------------------------------------------	NM_001027535
	-------------------------------------------------------------------------------------------------------------------------	NM_066897
cbriggsae	((((((...(((...((((((...(((.(((....(((((((.((((((...........)))))).)))))))...))))))....)))))).....)))...)))))).	0.960 -22.70

cbriggsae

chromosome:chrIII:8639213:8639323:1

Same_strand|Intronic_non-coding|NM_001092591|MGC81879 ## Opposite_strand|Intronic_non-coding|NM_001030661|SETD1B ## {Repeats: no}

block4348 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.309	no	no	0.36/0.36	25/25/0.00	0.0	0.0	1	0	1	0	13	22	5arm	1	nd	0.40	4	1	1	na	na

		reads	miRBase family seed
seed	--------------GAUAUUG-------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------GGATATTGAGATCATCACGGTTTTT--------------------------------------------------------------------------------	25	1
cbriggsae	acgcagagtttcaGGATATTGAGATCATCACGGTTTTTgtaatgtcttctggagctatggaatcgcttggagctgcagaacctgcaaacgtaatgacatttttttctaatttcggcgt
	**********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070961
	--------------------------------------------------------------------------------------------------------------------------------	NM_001011629
	--------------------------------------------------------------------------------------------------------------------------------	NM_001047939
	--------------------------------------------------------------------------------------------------------------------------------	NM_001013793
	--------------------------------------------------------------------------------------------------------------------------------	NM_001094367
cbriggsae	((((.(((.((.((((....((..((((.(((...((((((.....(((((.((((..((.....))...)))).)))))..))))))))).))))..))...)))))).))).))))	0.610 -28.10

cbriggsae

chromosome:chrX:2161596:2161713:-1

Same_strand|Intronic_coding|NM_070961|ergo-1 ## Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_coding|NM_001047939|LOC499407 ## {Repeats: no}

block208 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.229	no	no	0.55/0.55	22/22/1.00	0.0	0.0	1	0	1	0	28	-2	5arm_loop	1	nd	0.32	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------GAAUUUC-------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------CGAATTTCGGTCGTCCATGTGC-----------------------------------------------------	22	1
cbriggsae	ctcccctttttatatttttcgtcctaatCGAATTTCGGTCGTCCATGTGCaatcaaatattggaatcttatgatcattttctgggaacggaacgagaatggga
	*******************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001030661
	-----------------------------------------------------------------------------------------------------------------	NM_065286
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001015867
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083967
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_013685
	-----------------------------------------------------------------------------------------------------------------	NM_127719
	-----------------------------------------------------------------------------------------------------------------	NM_067629
cbriggsae	.((((.(((((.....((((((((((...(((....((((((((((((........)))).)))......)))))...)))))))).))))).))))).))))	0.670 -21.00

cbriggsae

chromosome:chrI:9724216:9724318:-1

Same_strand|Intronic_non-coding|NM_001030661|SETD1B ## Opposite_strand|Intronic_non-coding|NM_065286|Y53G8AR.6 ## {Repeats: no}

sblock50 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.099	no	no	0.36/0.64	18/28/0.40	0.0 0.8 0.3	0.0 0.2 0.0	1 8 24	0 0 0	1 1 1	0 0 0	3 15 2	5 -13 9	5arm 5arm_loop_3arm 3arm	7 7 7	nd nd nd	0.35 0.36 0.45	3 4 6	48	1	4	3

		reads	miRBase family seed
seed	-------------------------------------------UCCUGGA-------------	20	novel
seed	------------------------------------------AUCCUGG--------------	10	novel
seed	-----------------UACUUGG---------------------------------------	4	novel
seed	----------------------------------GCCUGGG----------------------	3	novel
seed	-------------------CUUGGAU-------------------------------------	2	novel
seed	----------------GUACUUG----------------------------------------	2	novel
seed	------------------ACUUGGA--------------------------------------	2	novel
seed	-----------------------------------------AAUCCUG---------------	1	novel
seed	----------------------------------------GAAUCCU----------------	1	novel
seed	-------------------------------------UGGGAAU-------------------	1	novel
seed	----UGAGUCC----------------------------------------------------	1	novel
seed	------------------------------------CUGGGAA--------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------ATCCTGGATGTTGTAAGCT--	19	17
	-----------------------------------------AATCCTGGATGTTGTAAGCT--	20	7
	----------------GTACTTGGATCGGAGACGGCCTGGG----------------------	25	4
	---------------------------------GGCCTGGGAATCCTGGATGTTGTAAGCT--	28	3
	------------------------------------------ATCCTGGATGTTGTAAGCTT-	20	2
	------------------ACTTGGATCGGAGACGGCCTGG-----------------------	22	2
	---------------AGTACTTGGATCGGAGACGGCCTGGG----------------------	26	2
	-----------------------------------CCTGGGAATCCTGGATGTTGTAAGCT--	26	1
	-----------------------------------------AATCCTGGATGTTGTAAG----	18	1
	----------------------------------------GAATCCTGGATGTTGTAAGCT--	21	1
	-----------------------------------------AATCCTGGATGTTGTAAGCTT-	21	1
	---TTGAGTCCAGTTAGTACTTG----------------------------------------	20	1
	---------------------------------------GGAATCCTGGATGTTGTAAGCT--	22	1
	-----------------TACTTGGATCGGAGACGGCCTGG-----------------------	23	1
	-----------------------------------------AATCCTGGATGTTGTAAGCTTT	22	1
	------------------------------------------ATCCTGGATGTTGTAAGCTTT	21	1
	-----------------TACTTGGATCGGAGACGGCCTG------------------------	22	1
	------------------------------------CTGGGAATCCTGGATGTTGTAAGCT--	25	1
cbriggsae	acgttgagtccagttagtacttggatcggagacggcctgggAATCCTGGATGTTGTAAGCTtt
	***************************************************************
cbriggsae	(((....((((((...((.(((((..((....))..))))).)).))))))..))).......	0.990 -17.60

cbriggsae

chromosome:chrUn:4856949:4857011:-1

{Repeats: no}

sblock49 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.346	no	no	0.30/0.48	19/26/0.50	0.0 6.8	0.0 9.6	1 5	0 0	1 1	0 0	8 0	-1 -9	5arm_loop 3arm	3 3	nd nd	0.46 0.36	6 5	6	1	0	-8

		reads	miRBase family seed
seed	---------------------------------------------------UCUUAGC-------------------	1	novel
seed	-----------------------------------------UAAAUGG-----------------------------	1	novel
seed	---------------------------------------UUUAAAU-------------------------------	1	novel
seed	---------UAUAUUA-------------------------------------------------------------	1	novel
seed	-------------------------------------------------------AGCGUGA---------------	1	novel
seed	--------------------------------------AUUUAAA--------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------GTCTTAGCGTGAGGACATTAAGGTAG-	26	1
	-------------------------------------TATTTAAATGGCAGTCTTAG--------------------	20	1
	--------------------------------------ATTTAAATGGCAGTCTTAG--------------------	19	1
	------------------------------------------------------TAGCGTGAGGACATTAAGGTAGC	23	1
	--------TTATATTAAAGCTGGCTTCTGCCC---------------------------------------------	24	1
	----------------------------------------TTAAATGGCAGTCTTAGCGTGAGGAC-----------	26	1
cbriggsae	cttaggctTTATATTAAAGCTGGCTTCTGCCCtatgaTATTTAAATGGCAGTCTTAGCGTGAGGACATTAAGGTAGC
	*****************************************************************************
cbriggsae	(((((.((((((......(((((...(((((...............)))))..)))))))))))...))))).....	0.440 -15.96

cbriggsae

chromosome:chrUn:4217060:4217136:-1

{Repeats: no}

block358 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.565	no	no	0.32/0.32	19/19/0.00	0.0	0.0	1	0	1	0	7	30	5arm	1	nd	0.26	3	1	1	na	na

		reads	miRBase family seed
seed	--------AGUAAAC---------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------TAGTAAACCATTTTTGTCG----------------------------------------------------------------------------------------------	19	1
cbriggsae	gaattagTAGTAAACCATTTTTGTCGaaaatattattctttccctggtttcagggttaaaactcacaaaccgtaaaacctaatgtaatacagaaaagcggttctcacttatctcggttct
	************************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008855
	----------------------------------------------------------------------------------------------------------------------------------	NM_176035
	----------------------------------------------------------------------------------------------------------------------------------	NM_205985
	----------------------------------------------------------------------------------------------------------------------------------	NM_205986
	----------------------------------------------------------------------------------------------------------------------------------	NM_102365
	----------------------------------------------------------------------------------------------------------------------------------	NM_001084127
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068405
	----------------------------------------------------------------------------------------------------------------------------------	NM_001009899
cbriggsae	(((((((.(((.((((.(((((((.....((((((.........((((((..((((....))))..)))))).......))))))...)))))))...))))...)))...)).))))).	0.490 -17.09

cbriggsae

chromosome:chrI:8153368:8153487:1

Same_strand|Intronic_non-coding|NM_008855|Prkcb1 ## Opposite_strand|Intronic_coding|NM_176035|nAcRalpha-34E ## Same_strand|Intronic_coding|NM_068405|ZK616.7 ## Opposite_strand|Intronic_non-coding|NM_001009899|KIAA2018 ## {Repeats: no}

block395 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.868	no	no	0.33/0.33	18/18/0.00	0.0	0.0	2	0	1	0	10	10	5arm	1	nd	0.28	2	2	1	na	na

		reads	miRBase family seed
seed	-----------UUAUAGA--------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	----------TTTATAGAACGGGTTTAG----------------------------------------------	18	2
cbriggsae	aacattacaaTTTATAGAACGGGTTTAGaatttcaagggggactccggtcaaattttctattgcattaaaatgt
	**************************************************************************
	------------------------------------------------------------------------------------	NM_001030661
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067080
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_175441
cbriggsae	.(((((..(((..((((((..(((((.((.......((....))....)))))))))))))...)))..)))))	0.780 -8.20

cbriggsae

chromosome:chrI:9457242:9457315:1

Opposite_strand|Intronic_non-coding|NM_001030661|SETD1B ## Same_strand|Intronic_coding|NM_067080|Y66D12A.21 ## Same_strand|Intronic_non-coding|NM_175441|Mylk3 ## {Repeats: no}

block3101 [novel_lenNOK_multiarm]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.540	no	no	0.27/0.33	18/26/0.25	0.0 0.0	0.0 1.3	1 3	0 0	1 1	0 0	36 6	-24 8	5arm_loop_3arm 3arm	3 3	nd nd	0.35 0.22	4 2	4	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------UAUUGAG--------------------	3	novel
seed	-------------------------------------AUAAUUU----------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------TTATTGAGTTCCAGTATG----------	18	2
	--------------------------------------------------TTATTGAGTTCCAGTATGAATG------	22	1
	------------------------------------AATAATTTGTGCTTTTATTGAGTTCC----------------	26	1
cbriggsae	aatggcagtcttagcgtgaggacattaaggtagcaaAATAATTTGTGCTTTTATTGAGTTCCAGTATGAATGaagtta
	******************************************************************************
cbriggsae	(((..((.((...((.((.((((.((((...((((.((....)).))))....))))))))))))..)).))..))).	0.660 -12.20

cbriggsae

chromosome:chrUn:4217016:4217093:-1

{Repeats: no}

block286 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.351	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	10	17	3arm	2	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------AAUAGCA----------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------CAATAGCAGTCTGGGCATCT----------	20	1
cbriggsae	gttatccaccggaaccgagatttcattgaatgcagagaacggaagccttttgtggtgttccgatagtagtCAATAGCAGTCTGGGCATCTtgtctgaaca
	****************************************************************************************************
	--------------------------------------------------------------------------------------------------------------	NM_080376
	--------------------------------------------------------------------------------------------------------------	NM_166030
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_131292
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_058465
	--------------------------------------------------------------------------------------------------------------	NM_025451
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_005379
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_005235
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001042599
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_170794
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001123230
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001004111
cbriggsae	(((....((.(((.((.(((((..(((((.(((......((((((((......))).)))))...))).)))))...))))).))..))).))...))).	0.940 -24.20

cbriggsae

chromosome:chrI:2681756:2681855:1

Opposite_strand|Intronic_coding|NM_080376|mam ## Same_strand|Intronic_coding|NM_131292|col2a1a ## Same_strand|Intronic_non-coding|NM_058465|src-1 ## Opposite_strand|Intronic_non-coding|NM_025451|Camk2n1 ## {Repeats: no}

block3481 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.335	no	no	0.24/0.24	25/25/0.00	0.0	0.0	1	0	1	0	11	13	3arm	3	9	0.24	1	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------GUAACAU----------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------------TGTAACATTGTGATGAAGATTTATT-----------	25	1
cbriggsae	acttactatgttgttagtcattttcattatgttttaagactaggtgcagtttttggtatttttacaggTGTAACATTGTGATGAAGATTTATTacagggtatgt
	********************************************************************************************************
	>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++	NM_001097928
cbriggsae	((.((((.(((.((.((((.((.((((.(((((.((.....((((((........)))))).......)).))))).)))).)).)))).)).))).)))).))	0.450 -17.90

cbriggsae

chromosome:chrUn:4250274:4250377:1

Same_strand|Intronic_non-coding|NM_001097928|LOC100049086 ## {Repeats: no}

block297 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.977	no	no	0.40/0.40	25/25/0.00	0.0	0.0	1	0	1	0	0	24	5arm	1	nd	0.36	3	1	1	na	na

		reads	miRBase family seed
seed	-UCUCAUG------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	GTCTCATGAGATAAGCAACAATTCC-------------------------------------------------------------------------	25	1
cbriggsae	GTCTCATGAGATAAGCAACAATTCCaaacattaaaatataggcaaattcaattagaatgtaaacgtaacttggtgtgagtccttcgtcatcttcggat
	**************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_026450
	------------------------------------------------------------------------------------------------------------	NM_001024290
	------------------------------------------------------------------------------------------------------------	NM_175692
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087652
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001089360
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_115574
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_021399
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079883
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001109628
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001109626
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001853
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001026279
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001026278
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001026277
cbriggsae	((((...(((((..((((..((((...(((((((..(((......((((.....))))......)))..)))))))))))..)).)).))))).))))	0.410 -10.30

cbriggsae

chromosome:chrI:3857904:3858001:1

Same_strand|Intronic_non-coding|NM_026450|Zfp169 ## Opposite_strand|Intronic_non-coding|NM_001024290|Gal3st3 ## Same_strand|Intronic_coding|NM_001087652|col18sv-a ## {Repeats: no}

block2923 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.013	no	no	0.30/0.30	20/20/1.00	0.0	0.0	2	0	1	0	6	3	3arm	3	nd	0.15	1	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------ACACAAG------------------	2	novel
		len	cloning frequencies
			AF16
	----------------------------------------TACACAAGATTACAACTCTA------	20	2
cbriggsae	ttaaatggggttttagtttagtaaaaatatgtgttttgcaTACACAAGATTACAACTCTAtttggg
	******************************************************************
cbriggsae	((((((((((((.((((((.((.....(((((.....))))).)).)))))).)))))))))))).	0.940 -15.80

cbriggsae

chromosome:chrM:208:273:-1

{Repeats: no}

block1870 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.428	no	no	0.33/0.33	21/21/1.00	0.0	0.0	1	0	1	0	5	2	3arm	1	nd	0.29	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------AGUUUGU------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------TAGTTTGTTGTTAACATGGTG-----	21	1
cbriggsae	ggaacttgttaaaacttttttgcaacttttcataatgaTAGTTTGTTGTTAACATGGTGatcca
	****************************************************************
	--------------------------------------------------------------------------	NM_070284
cbriggsae	((((((((((((.........((((((..((.....)).)))).))..)))))).)))..))).	0.950 -8.80

cbriggsae

chromosome:chrIII_random:45034:45097:1

Opposite_strand|Intronic_coding|NM_070284|egl-23 ## {Repeats: no}

block2714 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.709	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	8	32	5arm	1	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	---------AAGUUUG------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------GAAGTTTGTACAAGCCTGGCT-----------------------------------------------------------------------------------------	21	1
cbriggsae	aaaagcaaGAAGTTTGTACAAGCCTGGCTtaaacaacgcggactttggatagacgatcaagtgtgctgtaggaaagttgatcagagagtgtggcccagtcacgaagttctccgttttt
	**********************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------------	NM_001007257
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067526
	--------------------------------------------------------------------------------------------------------------------------------	NM_012231
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_058707
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_115609
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001032790
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001076920
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001014737
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001014738
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001014739
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080349
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_167375
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_167376
	--------------------------------------------------------------------------------------------------------------------------------	NM_001005929
	--------------------------------------------------------------------------------------------------------------------------------	NM_139799
	--------------------------------------------------------------------------------------------------------------------------------	NM_206286
	--------------------------------------------------------------------------------------------------------------------------------	NM_015866
	--------------------------------------------------------------------------------------------------------------------------------	NM_208142
	--------------------------------------------------------------------------------------------------------------------------------	NM_121131
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001076831
	--------------------------------------------------------------------------------------------------------------------------------	NM_001052994
	--------------------------------------------------------------------------------------------------------------------------------	NM_001098050
	--------------------------------------------------------------------------------------------------------------------------------	NM_078523
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090075
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_172592
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009930
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000092
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000088
	--------------------------------------------------------------------------------------------------------------------------------	NM_001091797
	--------------------------------------------------------------------------------------------------------------------------------	NM_214491
	------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<---	NM_001047473
	.................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<---	NM_001047474
cbriggsae	((((((.((((.(((((....((..((((......((((...((((((...(((..((.((....))....))..)))..)))))).))))))))..)).))))).))))..))))))	0.610 -25.70

cbriggsae

chromosome:chrIV:10751287:10751404:1

Opposite_strand|Intronic_coding|NM_001007257|PRDM2 ## Same_strand|Intronic_coding|NM_067526|Y66H1A.4 ## Opposite_strand|Intronic_non-coding|NM_121131|CIPK5 ## Opposite_strand|Boundary_non-coding|NM_001047473|csr-1 ## {Repeats: no}

block4432 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.305	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	32	0	3arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------CACCGGG------------------------------------------	1	miR-35/36/38/39/40/41
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------TCACCGGGTGAAATTCGA--------------------------------	18	1
cbriggsae	gcttctaaaaccatatataatcatatttaatatactgaaaatcatatttttcccatagaattcgcaaagcTCACCGGGTGAAATTCGAtttccactcactgtattttcctgatagatgcc
	************************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------------	NM_172925
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007496
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110231
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110232
	----------------------------------------------------------------------------------------------------------------------------------	NM_001080396
	----------------------------------------------------------------------------------------------------------------------------------	NM_007736
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110229
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010160
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110228
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110230
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090075
	----------------------------------------------------------------------------------------------------------------------------------	NM_001087789
	----------------------------------------------------------------------------------------------------------------------------------	NM_001079250
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008591
cbriggsae	((.((((.............(((.....((((((.((((((((..(((((.(((...((...........))...))).)))))..)))))....))).))))))....))))))).)).	0.500 -15.31

cbriggsae

chromosome:chrX:5829094:5829213:-1

Opposite_strand|Intronic_non-coding|NM_172925|Klhl31 ## Same_strand|Intronic_non-coding|NM_007496|Zfhx3 ## Opposite_strand|Intronic_coding|NM_007736|Col4a5 ## Same_strand|Intronic_coding|NM_001090075|MGC69046 ## {Repeats: no}

block1742 [novel_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.019	no	no	0.29/0.29	21/21/1.00	0.0	0.0	1	0	1	0	19	15	3arm	12	nd	0.43	5	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AUAUGAU--------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------TATATGATTTTTGGAACCTAG-------------------	21	1
cbriggsae	tagctaagatcaaagtgtagtatctgttcttatcgtattaacctacggtatacactcgaatgagtgtaataaaggtTATATGATTTTTGGAACCTAGgaaagactcggggcttgct
	********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011448
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_201507
	------------------------------------------------------------------------------------------------------------------------------	NM_111620
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001088088
	------------------------------------------------------------------------------------------------------------------------------	NM_001066926
	------------------------------------------------------------------------------------------------------------------------------	NM_001020307
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007393
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_122291
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067241
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001129943
	------------------------------------------------------------------------------------------------------------------------------	NM_001039838
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_168412
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_168413
cbriggsae	.(((.(((.((..(((.........(((((.((((((.((((((...((.(((((((....)))))))))..))))))))))))....))))).........)))..)).))))))	0.900 -29.47

cbriggsae

chromosome:chrIII:8089591:8089706:1

Same_strand|Intronic_non-coding|NM_011448|Sox9 ## Opposite_strand|Intronic_coding|NM_111620|AtRABA5b ## {Repeats: no}

block4586 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.166	no	no	0.50/0.63	21/27/0.90	0.0	0.3	7	0	1	0	15	-8	3arm	20	nd	0.52	7	10	1	na	na

		reads	miRBase family seed
seed	-------------------------------------CCUUAGG------------------------------	7	novel
seed	---------------------------------------------CGCUGGU----------------------	1	novel
seed	-----------------------------------------AGGUCGC--------------------------	1	novel
seed	----------------------------------------UAGGUCG---------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------TCCTTAGGTCGCTGGTTCGAATC---------------	23	5
	------------------------------------TCCTTAGGTCGCTGGTTCGAAT----------------	22	2
	---------------------------------------TTAGGTCGCTGGTTCGAATCCG-------------	22	1
	----------------------------------------TAGGTCGCTGGTTCGAATCCG-------------	21	1
	--------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA---	27	1
cbriggsae	agttggtagagcggaggactgtagagtcagtgggtaTCCTTAGGTCGCTGGTTCGAATCcggctcgacggattt
	**************************************************************************
	------------------------------------------------------------------------------------	NM_001004313
	------------------------------------------------------------------------------------	NM_008873
	------------------------------------------------------------------------------------	NM_001088391
	------------------------------------------------------------------------------------	NM_077714
cbriggsae	((((.((.((((...(((.....((..((((((...........))))))..))...))).)))).)).)))).	0.990 -21.90

cbriggsae

chromosome:chrX:14287365:14287438:-1

Opposite_strand|Intronic_non-coding|NM_001004313|TMEM220 ## Opposite_strand|Intronic_coding|NM_077714|nhr-17 ## {Repeats: no}

block2235 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.974	no	no	0.50/0.50	22/22/1.00	0.0	0.0	1	0	1	0	6	11	5arm	2	nd	0.23	4	1	1	na	na

		reads	miRBase family seed
seed	-------UUUCGAA--------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------CTTTCGAAGTTCAACTGGCTCC------------------------------------------------------------------	22	1
cbriggsae	gccagcCTTTCGAAGTTCAACTGGCTCCgcagttttgggacgtgctggaatctctgatcggaacaatgctctgttgacaagtggaactgatgct
	**********************************************************************************************
	--------------------------------------------------------------------------------------------------------	NM_001014737
	--------------------------------------------------------------------------------------------------------	NM_001014738
	--------------------------------------------------------------------------------------------------------	NM_001014739
	--------------------------------------------------------------------------------------------------------	NM_080349
	--------------------------------------------------------------------------------------------------------	NM_167375
	--------------------------------------------------------------------------------------------------------	NM_167376
	--------------------------------------------------------------------------------------------------------	NM_014660
	--------------------------------------------------------------------------------------------------------	NM_001076831
	--------------------------------------------------------------------------------------------------------	NM_001090075
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001030400
	--------------------------------------------------------------------------------------------------------	NM_001047939
	--------------------------------------------------------------------------------------------------------	NM_009930
	--------------------------------------------------------------------------------------------------------	NM_000092
	--------------------------------------------------------------------------------------------------------	NM_000088
	--------------------------------------------------------------------------------------------------------	NM_001007157
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001091797
	--------------------------------------------------------------------------------------------------------	NM_179831
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214491
cbriggsae	(((((..(((((....(((((.((((((((((.(((.((.....)).)))...)))..)))).....)))..)))))....))))))))..)).	0.450 -19.60

cbriggsae

chromosome:chrIV:10898037:10898130:-1

Opposite_strand|Intronic_coding|NM_001014737|up ## Same_strand|Intronic_non-coding|NM_001030400|cnot4 ## Same_strand|Intronic_coding|NM_001091797|kif15-b ## {Repeats: no}

block45 [novel_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.407	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	12	2	3arm	49	nd	0.40	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------CGUUCGU------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------GCGTTCGTGGTGTAATGGTC------------	20	1
cbriggsae	ggcagccaccgcaatatgtacgccttggaagctttaatgagtgtgcGCGTTCGTGGTGTAATGGTCagcatggatgcc
	******************************************************************************
	----------------------------------------------------------------------------------------	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199320
	----------------------------------------------------------------------------------------	NM_014333
	----------------------------------------------------------------------------------------	NM_001098517
	----------------------------------------------------------------------------------------	NM_061553
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067080
cbriggsae	((((.(((..((.((...((((((.((((.((............))...)))).))))))...))..)).))).))))	0.710 -22.60

cbriggsae

chromosome:chrI:1368004:1368081:-1

block4768 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.201	no	no	0.32/0.32	19/19/0.00	0.0	0.0	1	0	1	0	40	-4	5arm_loop	1	nd	0.47	5	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------UUUUUUC------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------TTTTTTTCTTGGGCTGAAA-------------------------------------------------------	19	1
cbriggsae	agcagacaaggaagacacccgaattttttgttttgctttgTTTTTTTCTTGGGCTGAAAgaaggaaaaaaaagaagaaagtaaaaacatcactaatcggaaaaaaaaagttggc
	******************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_072416
cbriggsae	.((.(((...........((((......(((((((((((.(((((((.((...((......))..)).))))))).))))))))).)).......)))).........))).))	0.710 -17.77

cbriggsae

chromosome:chrX:19696794:19696907:-1

Same_strand|Intronic_coding|NM_072416|str-204 ## {Repeats: no}

block3395 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.054	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	2	6	5arm	1	nd	0.19	2	1	1	na	na

		reads	miRBase family seed
seed	---AUUUUUG-------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--AATTTTTGAGGCACGTAACGT------------------------------------------	21	1
cbriggsae	tgAATTTTTGAGGCACGTAACGTgccttgtatttttgaagcacgtgccttgtatttttgagattc
	*****************************************************************
cbriggsae	.(((((((.((((.(((..((((((.(((......))).))))))....))).)))).)))))))	0.820 -15.50

cbriggsae

chromosome:chrUn:1502079:1502143:1

{SimpF: trf}

block626 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.377	no	no	0.74/0.74	19/19/0.00	0.0	0.0	1	0	1	0	16	17	5arm	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------AGGUGGC-----------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------GAGGTGGCGGCGCATGAGC------------------------------------------------------------------------------	19	1
cbriggsae	tctggtgcatattgttGAGGTGGCGGCGCATGAGCtttagcccctgcagactctaaaagtgtgtactttggctggttctccatatcgccacgtggcgcttgacgctttctgga
	*****************************************************************************************************************
	---------------------------------------------------------------------------------------------------------------------------	NM_001002069
	---------------------------------------------------------------------------------------------------------------------------	NM_214811
cbriggsae	(((((.((.....((..((((.((((((...(((..((((((..((((.(((.....))).))))....))))))..))).....))))..)).)).))..))))...)))))	0.870 -34.20

cbriggsae

chromosome:chrII:3994381:3994493:-1

Opposite_strand|Intronic_non-coding|NM_001002069|rpl37 ## {Repeats: no}

block2237 [novel_lenNOK_cloningOK_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.44/0.48	23/25/0.08	0.0	0.0	12	0	1	0	16	4	5arm	1	nd	0.28	4	13	1	na	na

		reads	miRBase family seed
seed	-----------------UUUGAUU----------------------------------------------------------------------------	12	novel
seed	---------------------AUUGCUC------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------TTTTGATTGCTCGTCGATGTTGTCG-----------------------------------------------------------	25	12
	--------------------GATTGCTCGTCGATGTTGTCGAA---------------------------------------------------------	23	1
cbriggsae	atctctgacttcaattTTTTGATTGCTCGTCGATGTTGTCGaagacacaaaaaattctatcgaatcatcgaaaacaatcaaagaatggagtgattgagat
	****************************************************************************************************
	--------------------------------------------------------------------------------------------------------------	NM_121448
	--------------------------------------------------------------------------------------------------------------	NM_175212
	--------------------------------------------------------------------------------------------------------------	NM_001076831
	--------------------------------------------------------------------------------------------------------------	NM_001090075
	--------------------------------------------------------------------------------------------------------------	NM_001047939
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068895
	--------------------------------------------------------------------------------------------------------------	NM_009930
	--------------------------------------------------------------------------------------------------------------	NM_000092
	--------------------------------------------------------------------------------------------------------------	NM_000088
	--------------------------------------------------------------------------------------------------------------	NM_001036805
	--------------------------------------------------------------------------------------------------------------	NM_179831
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039599
cbriggsae	(((((..(((((.((((((((((((....((((((...(((((((..........))).))))..))))))...)))))))))))))))))....)))))	1.000 -33.60

cbriggsae

chromosome:chrIV:10951960:10952059:-1

Opposite_strand|Intronic_coding|NM_121448|AT5G14440 ## Opposite_strand|Intronic_non-coding|NM_175212|Tmem65 ## Same_strand|Intronic_coding|NM_068895|C33H5.17 ## Same_strand|Intronic_non-coding|NM_001039599|COLEC12 ## {Repeats: no}

block276 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.483	no	no	0.45/0.45	22/22/1.00	0.0	0.0	1	0	1	0	0	13	5arm	8	nd	0.45	5	1	1	na	na

		reads	miRBase family seed
seed	-CCAGCUA----------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	TCCAGCTAGTGTGTGGTAGAAT--------------------------------------------	22	1
cbriggsae	TCCAGCTAGTGTGTGGTAGAATgctttactcgtgtagatgacacgtgtggtatctcaaacttgggt
	******************************************************************
	----------------------------------------------------------------------------	NM_174569
	----------------------------------------------------------------------------	NM_002035
	----------------------------------------------------------------------------	NM_177366
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001107428
	----------------------------------------------------------------------------	NM_053878
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008665
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067597
cbriggsae	((((...(((.((.((((.......((((.(((((.....))))).)))))))).)).))))))).	0.840 -14.31

cbriggsae

chromosome:chrI:2029064:2029129:1

block3131 [novel_lenNOK_cloningOK_5varHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.273	no	no	0.38/0.42	19/26/0.20	3.0 0.0	1.5 0.0	2 3	0 0	1 1	0 0	12 8	1 15	3arm 3arm	2 2	nd nd	0.22 0.37	2 4	5	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------GGCUGAG-------------------	3	novel
seed	--------------------------------------------------------UCUUUGG---------------------------	1	novel
seed	--------------------------------------------------AAACUAU---------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------------------------------------AGGCTGAGTAGTAATTGAG--------	19	3
	-------------------------------------------------TAAACTATCTTTGGAGGCTGAGTAGT---------------	26	1
	-------------------------------------------------------ATCTTTGGAGGCTGAGTAGTAAT------------	23	1
cbriggsae	gagcaggagtaaagttgtatttaaactgaaaagatattggcagacattctaaactatctttggAGGCTGAGTAGTAATTGAGagccctca
	******************************************************************************************
cbriggsae	(((..((.....(((((((((((..((..(((((((((((........))))..)))))))..))..)))))).))))).....))))).	0.970 -17.60

cbriggsae

chromosome:chrUn:4430767:4430856:-1

{Repeats: no}

block2885 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.925	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	6	14	3arm	1	nd	0.45	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------UUCGAAU------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------------------GTTCGAATGGGTGGTCAGAC------	20	1
cbriggsae	cacagacgaataaactggcgaatagatgggcggttcctcgggtggactctttggtggcaccccaccGTTCGAATGGGTGGTCAGACgggtgt
	********************************************************************************************
cbriggsae	.(((..((......(((((...((..((..((((.....(((((.(((....)))..))))).))))..))..))....))))).))..)))	0.940 -23.50

cbriggsae

chromosome:chrIV_random:16381:16472:1

{Repeats: no}

block128 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.091	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	11	0	3arm	5	nd	0.43	4	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------UUGAGAU------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------GTTGAGATGGTAGTTAACAGT-----------	21	1
cbriggsae	gaaccgtgactgctatgcaacccttggcttcttccGTTGAGATGGTAGTTAACAGTggattggttca
	*******************************************************************
	-----------------------------------------------------------------------------	NM_013927
cbriggsae	((((((...(((((..((.(((((..((.......))..))..))).))....)))))..)))))).	0.990 -19.40

cbriggsae

chromosome:chrI:5952653:5952719:-1

Opposite_strand|Intronic_non-coding|NM_013927|Cngb3 ## {Repeats: no}

block2047 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.566	no	no	0.55/0.55	20/20/1.00	0.0	0.0	2	0	1	0	4	2	3arm	1	nd	0.40	4	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------CGUUUCG----------------	2	novel
		len	cloning frequencies
			AF16
	----------------------------------TCGTTTCGGCTCAGATGTGG----	20	2
cbriggsae	tttgtaactttctgactagtgagttaaaaaccatTCGTTTCGGCTCAGATGTGGacaa
	**********************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105717
	--------------------------------------------------------------------	NM_198022
	--------------------------------------------------------------------	NM_020066
	--------------------------------------------------------------------	NM_017323
	--------------------------------------------------------------------	NM_069329
	--------------------------------------------------------------------	NM_011630
cbriggsae	.((((.((..(((((((..(((((........)))))....)).))))).))..))))	0.860 -8.60

cbriggsae

chromosome:chrIV:3230405:3230462:-1

Same_strand|Intronic_non-coding|NM_001105717|Dpysl2 ## Opposite_strand|Intronic_non-coding|NM_198022|Tnrc6c ## Opposite_strand|Intronic_coding|NM_020066|FMN2 ## {Repeats: no}

block4808 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.521	no	no	0.39/0.39	18/18/0.00	0.0	0.0	1	0	1	0	1	12	3arm	1	nd	0.33	2	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------UUUGCUA-----------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------TTTTGCTACCTGTGAAGA-	18	1
cbriggsae	tctgttctagagtcacacgaactgagatcttgaattagttttttggttTTTTGCTACCTGTGAAGAg
	*******************************************************************
	-----------------------------------------------------------------------------	NM_001089360
	-----------------------------------------------------------------------------	NM_007496
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	-----------------------------------------------------------------------------	NM_001084210
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134696
	-----------------------------------------------------------------------------	NM_103590
cbriggsae	.((.((((((.((..((.((((..(((.((......))..)))..))))..))..))))).))).))	0.850 -11.10

cbriggsae

chromosome:chrX:1414100:1414166:1

Opposite_strand|Intronic_coding|NM_001089360|zgc:162345 ## Opposite_strand|Intronic_non-coding|NM_007496|Zfhx3 ## Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_coding|NM_134696|CG2839 ## {Repeats: no}

block3972 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.437	no	no	0.62/0.63	19/21/0.50	0.0	1.0	2	0	1	0	10	33	5arm	1	nd	0.29	2	2	1	na	na

		reads	miRBase family seed
seed	-----------UUCCGAG------------------------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	----------GTTCCGAGCTCGACGCTGA-------------------------------------------------------------------------------------------	19	1
	----------GTTCCGAGCTCGACGCTGAGA-----------------------------------------------------------------------------------------	21	1
cbriggsae	gtttccagatGTTCCGAGCTCGACGCTGAGAttgagaaaaaaaaaaaaaaaaaacatccagataaattatgtgattgatagttccaatttccaattgttgaataattggtttattgaaaa
	************************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------------	NM_071934
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087019
	----------------------------------------------------------------------------------------------------------------------------------	NM_001030396
	----------------------------------------------------------------------------------------------------------------------------------	NM_001001233
	----------------------------------------------------------------------------------------------------------------------------------	NM_001039279
	----------------------------------------------------------------------------------------------------------------------------------	NM_132582
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027854
	----------------------------------------------------------------------------------------------------------------------------------	NM_018693
	----------------------------------------------------------------------------------------------------------------------------------	NM_132246
	----------------------------------------------------------------------------------------------------------------------------------	NM_025133
	----------------------------------------------------------------------------------------------------------------------------------	NM_026988
	----------------------------------------------------------------------------------------------------------------------------------	NM_012167
cbriggsae	.((((..((((..((((..((((((..(((((((.(((................((..((.(((...))).))..))....))))))))))....))))))....))))..)))))))).	0.770 -17.95

cbriggsae

chromosome:chrV:1998048:1998167:1

Opposite_strand|Intronic_non-coding|NM_071934|tam-1 ## Same_strand|Intronic_non-coding|NM_001087019|nr2f2 ## Opposite_strand|Intronic_coding|NM_001030396|MGC69373 ## Same_strand|Intronic_coding|NM_001027854|grl-25 ## {Repeats: no}

block65 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.151	no	no	0.44/0.44	18/18/0.00	0.0	0.0	1	0	1	0	23	16	3arm	2	nd	0.33	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------UCAUACA---------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------GTCATACAAACCGTCAAG-----------------------	18	1
cbriggsae	gaggccaagaaaagttgtaaagaaggcgtcgacatgtatgataaacgccaatattatcatgtagtcggtgaagagcGTCATACAAACCGTCAAGcgctgaaaatatataattgcttc
	*********************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_002035
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_177366
	-------------------------------------------------------------------------------------------------------------------------------	NM_001107428
	-------------------------------------------------------------------------------------------------------------------------------	NM_214177
	-------------------------------------------------------------------------------------------------------------------------------	NM_001011629
	-------------------------------------------------------------------------------------------------------------------------------	NM_058481
	-------------------------------------------------------------------------------------------------------------------------------	NM_058496
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047248
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047247
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_059707
	-------------------------------------------------------------------------------------------------------------------------------	NM_000087
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010301
cbriggsae	(((((.......(((((((.....(((((.(((.((((((((...((((..(((......)))...))))......))))))))....)))..))))).......))))))))))))	0.900 -25.31

cbriggsae

chromosome:chrI:2216614:2216730:-1

Same_strand|Intronic_non-coding|NM_002035|KDSR ## Opposite_strand|Intronic_non-coding|NM_001107428|Zfp612 ## Opposite_strand|Intronic_coding|NM_214177|CNG-1 ## Same_strand|Intronic_coding|NM_001047247|Y73E7A.1 ## {Repeats: no}

block1128 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.080	no	no	0.52/0.52	23/23/1.00	0.0	0.0	2	0	1	0	13	9	3arm	1	nd	0.17	2	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------CAAUUGA----------------------------	2	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------------CCAATTGATATGCTGGAGCCGTC-------------	23	2
cbriggsae	ttgaaatcagtttatgaacatgtttcaggatcgtcaagtgcgaaaaaattggaaatctctcccgtttcCCAATTGATATGCTGGAGCCGTCgccagctgttcaa
	********************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_053514
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_018362
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039354
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001033223
cbriggsae	.((((..(((((..(((....(((((((.((.(((((.((.((((.....(((......)))..)))).)).))))))).)))))))..)))..))))))))).	0.990 -26.40

cbriggsae

chromosome:chrII_random:243963:244066:-1

Same_strand|Intronic_coding|NM_053514|Lin7a ## Same_strand|Intronic_non-coding|NM_018362|LIN7C ## {Repeats: no}

block465 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.031	no	no	0.46/0.46	24/24/1.00	0.0	0.0	1	0	1	0	6	13	5arm	1	nd	0.54	4	1	1	na	na

		reads	miRBase family seed
seed	-------ACUGUUG--------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------GACTGTTGACACGTCATTTCTCAC----------------------------------------------------------	24	1
cbriggsae	ttgatcGACTGTTGACACGTCATTTCTCACaatcgattatcgatttttcgaattcgattttcagatcagacgaaaaaatttcagacaa
	****************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061066
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011945
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027735
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027736
	--------------------------------------------------------------------------------------------------	NM_001047975
	<<<<<<<<<<<<<<<<..................................................................................	NM_061075
cbriggsae	.((.((....(((....((((...(((...((((((...((((....))))..))))))...)))...))))....)))....)))).	0.690 -17.60

cbriggsae

chromosome:chrI_random:2162925:2163012:-1

Same_strand|Intronic_non-coding|NM_061066|K03D10.3 ## Opposite_strand|Intronic_coding|NM_001047975|LOC683871 ## Opposite_strand|Boundary_non-coding|NM_061075|ZK849.1 ## {Repeats: no}

block5097 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.119	no	no	0.36/0.36	22/22/1.00	0.0	0.0	1	0	1	0	1	3	5arm	1	nd	0.23	2	1	1	na	na

		reads	miRBase family seed
seed	--CAUGUCA----------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-ACATGTCAGATTTGAGTATCTC--------------------------------------	22	1
cbriggsae	aACATGTCAGATTTGAGTATCTCttgtaaacaaaagatattaagggttgaagcgacagttt
	*************************************************************
	-----------------------------------------------------------------------	NM_011978
cbriggsae	(((.((((.((((..(((((((.(((....))).)))))))...)))).....))))))).	0.940 -11.20

cbriggsae

chromosome:chrX:14752540:14752600:1

Opposite_strand|Intronic_non-coding|NM_011978|Slc27a2 ## {Repeats: no}

block3810 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.611	no	no	0.30/0.30	23/23/1.00	0.0	0.0	1	0	1	0	9	-3	3arm_loop	1	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------AUGUCAA------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------GATGTCAAGAGTTTGTATTCAAT---------	23	1
cbriggsae	gtcacatgaagagtaagaaaaggtaaagacaagtgaccatGATGTCAAGAGTTTGTATTCAATcaatgttac
	************************************************************************
	----------------------------------------------------------------------------------	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182351
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011821
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007904
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134696
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001040230
	----------------------------------------------------------------------------------	NM_001041377
	----------------------------------------------------------------------------------	NM_001042144
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079844
	----------------------------------------------------------------------------------	NM_207352
	----------------------------------------------------------------------------------	NM_073111
cbriggsae	((.((((((.(((((...........((((...((((......))))...)))).)))))..))).))).))	0.750 -8.80

cbriggsae

chromosome:chrV:11322552:11322623:-1

Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_coding|NM_182351|fipr-1 ## Same_strand|Intronic_non-coding|NM_011821|Gpc6 ## Opposite_strand|Intronic_coding|NM_001041377|ECU05_1680 ## {Repeats: no}

block1444 [novel_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.019	no	no	0.29/0.29	21/21/1.00	0.0	0.0	1	0	1	0	19	15	3arm	12	nd	0.43	5	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AUAUGAU--------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------TATATGATTTTTGGAACCTAG-------------------	21	1
cbriggsae	tagctaagatcaaagtgtagtatctgttcttatcgtattaacctacggtatacactcgaatgagtgtaataaaggtTATATGATTTTTGGAACCTAGgaaagactcggggcttgct
	********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_111620
	------------------------------------------------------------------------------------------------------------------------------	NM_001088088
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001066926
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105288
	------------------------------------------------------------------------------------------------------------------------------	NM_007393
	------------------------------------------------------------------------------------------------------------------------------	NM_122291
	------------------------------------------------------------------------------------------------------------------------------	NM_067241
	------------------------------------------------------------------------------------------------------------------------------	NM_001021511
cbriggsae	.(((.(((.((..(((.........(((((.((((((.((((((...((.(((((((....)))))))))..))))))))))))....))))).........)))..)).))))))	0.900 -29.47

cbriggsae

chromosome:chrIII:8046363:8046478:-1

Same_strand|Intronic_coding|NM_111620|AtRABA5b ## Opposite_strand|Intronic_non-coding|NM_001088088|LOC397919 ## Opposite_strand|Intronic_coding|NM_001021511|cdk9 ## {Repeats: no}

block4450 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.695	no	no	0.60/0.60	20/20/1.00	0.0	0.0	1	0	1	0	8	20	5arm	3	nd	0.30	4	1	1	na	na

		reads	miRBase family seed
seed	---------UGUCGCG---------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------TTGTCGCGGTACTGGAAGCC---------------------------------------------------------------------------------	20	1
cbriggsae	tgaggacgTTGTCGCGGTACTGGAAGCCatcaaagtaggatcaattaggaaaagcactttgaacactgatgagaaagatggtcctctccgtttggacgattcactacaa
	*************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_153821
	-----------------------------------------------------------------------------------------------------------------------	NM_125756
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_204793
	-----------------------------------------------------------------------------------------------------------------------	NM_079593
	-----------------------------------------------------------------------------------------------------------------------	NM_169386
	-----------------------------------------------------------------------------------------------------------------------	NM_176459
	-----------------------------------------------------------------------------------------------------------------------	NM_001016575
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001085944
cbriggsae	((((((.((((((((((....((..((((((....(((..((((..((........))))))...)))........))))))))...))))...)))))))).)).)).	0.590 -22.50

cbriggsae

chromosome:chrX:6635550:6635658:-1

Same_strand|Intronic_non-coding|NM_153821|Prrx1 ## Opposite_strand|Intronic_coding|NM_125756|HEN3 ## Opposite_strand|Intronic_non-coding|NM_079593|pros ## {Repeats: no}

block2984 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.248	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	6	0	3arm	8	nd	0.40	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------UUUGAAU------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------GTTTGAATGCAGGCCGTTGG------	20	1
cbriggsae	acgcttcaaactggtgacgttggcgggaGTTTGAATGCAGGCCGTTGGggtgta
	******************************************************
cbriggsae	((((..(((...(((..(((((((....)))..))))...))).)))..)))).	0.850 -14.90

cbriggsae

chromosome:chrUn:875817:875870:-1

{Repeats: no}

block2348 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.589	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	1	10	5arm	1	nd	0.24	3	1	1	na	na

		reads	miRBase family seed
seed	--GAGUUUC--------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-TGAGTTTCATGGGTGTTGTAT-------------------------------------------------------	21	1
cbriggsae	tTGAGTTTCATGGGTGTTGTATttagaaattgatgtcactttcaaaatttcacggaaaagaactacggaaattgaaa
	*****************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071218
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083250
	---------------------------------------------------------------------------------------	NM_001085890
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070819
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_002710
	---------------------------------------------------------------------------------------	NM_070649
cbriggsae	((.((((((...(((.((((((((.((((.((....)).)))).))))...))))......)))...)))))).)).	0.730 -10.50

cbriggsae

chromosome:chrIV:133581:133657:1

Same_strand|Intronic_coding|NM_071218|str-253 ## Same_strand|Intronic_non-coding|NM_001083250|rom-4 ## Opposite_strand|Intronic_non-coding|NM_001085890|MGC52856 ## Opposite_strand|Intronic_coding|NM_070649|C52D10.1 ## {Repeats: no}

block1914 [novel_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.002	no	no	0.45/0.45	20/20/1.00	0.0	0.0	1	0	1	0	1	30	5arm	1	nd	0.40	4	1	1	na	na

		reads	miRBase family seed
seed	--UCUCAAU-------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-TTCTCAATCGTCTCAACCAG-------------------------------------------------------------------------------------	20	1
cbriggsae	aTTCTCAATCGTCTCAACCAGagttgcacggacagggaaatttttgcaacggacaacggacagcggacaacggactgtccgtgcaacactggtctcaacgcgggaa
	**********************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------	NM_061817
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182297
cbriggsae	.(((((...(((....(((((.(((((((((((((.......(((((..((.....))....))))).......))))))))))))).)))))....))).)))))	0.980 -43.04

cbriggsae

chromosome:chrIV:997052:997157:-1

Opposite_strand|Intronic_non-coding|NM_061817|cct-3 ## Same_strand|Intronic_non-coding|NM_182297|B0546.4 ## {Repeats: no}

sblock47 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.346	no	no	0.30/0.48	19/26/0.50	0.0 6.8	0.0 9.6	1 5	0 0	1 1	0 0	8 0	-1 -9	5arm_loop 3arm	3 3	nd nd	0.46 0.36	6 5	6	1	0	-8

		reads	miRBase family seed
seed	---------------------------------------------------UCUUAGC-------------------	1	novel
seed	-----------------------------------------UAAAUGG-----------------------------	1	novel
seed	---------------------------------------UUUAAAU-------------------------------	1	novel
seed	---------UAUAUUA-------------------------------------------------------------	1	novel
seed	-------------------------------------------------------AGCGUGA---------------	1	novel
seed	--------------------------------------AUUUAAA--------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------GTCTTAGCGTGAGGACATTAAGGTAG-	26	1
	-------------------------------------TATTTAAATGGCAGTCTTAG--------------------	20	1
	--------------------------------------ATTTAAATGGCAGTCTTAG--------------------	19	1
	------------------------------------------------------TAGCGTGAGGACATTAAGGTAGC	23	1
	--------TTATATTAAAGCTGGCTTCTGCCC---------------------------------------------	24	1
	----------------------------------------TTAAATGGCAGTCTTAGCGTGAGGAC-----------	26	1
cbriggsae	cttaggctTTATATTAAAGCTGGCTTCTGCCCtatgaTATTTAAATGGCAGTCTTAGCGTGAGGACATTAAGGTAGC
	*****************************************************************************
cbriggsae	(((((.((((((......(((((...(((((...............)))))..)))))))))))...))))).....	0.440 -15.96

cbriggsae

chromosome:chrM:2997:3073:-1

{Repeats: no}

block4025 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.193	no	no	0.30/0.30	20/20/1.00	0.0	0.0	1	0	1	0	0	9	5arm	5	nd	0.10	2	1	1	na	na

		reads	miRBase family seed
seed	-AAAGUUU----------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	GAAAGTTTGGTAAAAGAAAG----------------------------------------------------	20	1
cbriggsae	GAAAGTTTGGTAAAAGAAAGcattttccttcagaggtacagtgacttttctttcacatcactgatattttct
	************************************************************************
	----------------------------------------------------------------------------------	NM_001027169
	----------------------------------------------------------------------------------	NM_062383
	----------------------------------------------------------------------------------	NM_059169
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_072496
	----------------------------------------------------------------------------------	NM_001027170
	----------------------------------------------------------------------------------	NM_001014737
	----------------------------------------------------------------------------------	NM_001014738
	----------------------------------------------------------------------------------	NM_001014739
	----------------------------------------------------------------------------------	NM_080349
	----------------------------------------------------------------------------------	NM_167375
	----------------------------------------------------------------------------------	NM_167376
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071774
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071305
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071443
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071442
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071441
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071439
cbriggsae	((((((((((((((..((((((((..(((....)))...)))).))))..)))......))))).)))))).	0.940 -12.00

cbriggsae

chromosome:chrV:4902049:4902120:1

Opposite_strand|Intronic_coding|NM_001027169|nhr-109 ## Same_strand|Intronic_coding|NM_072496|srt-6 ## {Repeats: no}

block4006 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.193	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	6	23	3arm	3	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AACCAUC-------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------GAACCATCGTGTTGGGACTAC------	21	1
cbriggsae	ttggggtcatctcggcaataaaggatcctaatttgtcaatgtttttgtaaaccgcaacaagacacttaaatccagaGAACCATCGTGTTGGGACTACatccaa
	*******************************************************************************************************
	-----------------------------------------------------------------------------------------------------------------	NM_007590
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_021252
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001075499
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_200970
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001129754
	-----------------------------------------------------------------------------------------------------------------	NM_001085355
	-----------------------------------------------------------------------------------------------------------------	NM_001126147
cbriggsae	.((((((..((((((((.....((.((((.(((((....(((((((((.....))))..)))))..)))))..)).)).))....))))))))..)).)))).	0.750 -21.50

cbriggsae

chromosome:chrV:3596098:3596200:1

Opposite_strand|Intronic_non-coding|NM_007590|Calm3 ## Same_strand|Intronic_coding|NM_021252|RAB18 ## Same_strand|Intronic_non-coding|NM_200970|rab5al ## {Repeats: no}

block2350 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.699	no	no	0.26/0.26	19/19/0.00	0.0	0.0	1	0	1	0	4	35	3arm	1	nd	0.26	2	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------------------------------------UUUUUUU---------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------------------------------------------------TTTTTTTTTGATGTCCTGT----	19	1
cbriggsae	aattagagtttacgataaaatgagtgaatcatgaagataataaaaattctcagtttcaatgaattcgtatttttcccaattcctctcttctgtgaTTTTTTTTTGATGTCCTGTagtt
	**********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071218
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067556
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083250
	--------------------------------------------------------------------------------------------------------------------------------	NM_001085890
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070819
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_002710
	--------------------------------------------------------------------------------------------------------------------------------	NM_070646
cbriggsae	(((((.((...(((.(((((.....((((((((((((.((((..(((((...........)))))..))))..............))))).)))))))..))))).))).)).)))))	0.850 -15.56

cbriggsae

chromosome:chrIV:142501:142618:1

block2658 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.527	no	no	0.40/0.40	20/20/1.00	0.0	0.0	2	0	1	0	6	30	3arm	1	nd	0.25	2	2	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------------CAUUUAA------------------	2	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------------------------------TCATTTAAGGCTGTATGTGC------	20	2
cbriggsae	aagataatatccacttaaaatgtttttcaaatcttcaaaatttcccggtttcaccaaacactgaaaaatacaatatttttggattatgtgaTCATTTAAGGCTGTATGTGCatttta
	*********************************************************************************************************************
	-------------------------------------------------------------------------------------------------------------------------------	NM_066961
cbriggsae	(((((.((((.(((((.(((((....(((....(((((((........(((((........)))))..........))))))).....))).))))).))).)).))))..))))).	0.790 -14.37

cbriggsae

chromosome:chrIV:8523222:8523338:1

Opposite_strand|Intronic_non-coding|NM_066961|W09D10.4 ## {Repeats: no}

block482 [novel_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.063	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	3	11	3arm	49	nd	0.25	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------CGUUCGU---------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------GCGTTCGTGGTGTAATGGTC---	20	1
cbriggsae	gctgccgccgcgccaggccgctaatttatatacgacaaggcaaagaatcttgaagtgtGCGTTCGTGGTGTAATGGTCagc
	*********************************************************************************
cbriggsae	(((((((..((((((((.(((........((((..(((((.......)))))..))))))).)).))))))..))).))))	1.000 -26.10

cbriggsae

chromosome:chrI_random:2777706:2777786:-1

{Repeats: no}

sblock31 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.099	no	no	0.36/0.64	18/28/0.40	0.0 0.8 0.3	0.0 0.2 0.0	1 8 24	0 0 0	1 1 1	0 0 0	3 15 2	5 -13 9	5arm 5arm_loop_3arm 3arm	7 7 7	nd nd nd	0.35 0.36 0.45	3 4 6	48	1	4	3

		reads	miRBase family seed
seed	-------------------------------------------UCCUGGA-------------	20	novel
seed	------------------------------------------AUCCUGG--------------	10	novel
seed	-----------------UACUUGG---------------------------------------	4	novel
seed	----------------------------------GCCUGGG----------------------	3	novel
seed	-------------------CUUGGAU-------------------------------------	2	novel
seed	----------------GUACUUG----------------------------------------	2	novel
seed	------------------ACUUGGA--------------------------------------	2	novel
seed	-----------------------------------------AAUCCUG---------------	1	novel
seed	----------------------------------------GAAUCCU----------------	1	novel
seed	-------------------------------------UGGGAAU-------------------	1	novel
seed	----UGAGUCC----------------------------------------------------	1	novel
seed	------------------------------------CUGGGAA--------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------ATCCTGGATGTTGTAAGCT--	19	17
	-----------------------------------------AATCCTGGATGTTGTAAGCT--	20	7
	----------------GTACTTGGATCGGAGACGGCCTGGG----------------------	25	4
	---------------------------------GGCCTGGGAATCCTGGATGTTGTAAGCT--	28	3
	------------------------------------------ATCCTGGATGTTGTAAGCTT-	20	2
	------------------ACTTGGATCGGAGACGGCCTGG-----------------------	22	2
	---------------AGTACTTGGATCGGAGACGGCCTGGG----------------------	26	2
	-----------------------------------CCTGGGAATCCTGGATGTTGTAAGCT--	26	1
	-----------------------------------------AATCCTGGATGTTGTAAG----	18	1
	----------------------------------------GAATCCTGGATGTTGTAAGCT--	21	1
	-----------------------------------------AATCCTGGATGTTGTAAGCTT-	21	1
	---TTGAGTCCAGTTAGTACTTG----------------------------------------	20	1
	---------------------------------------GGAATCCTGGATGTTGTAAGCT--	22	1
	-----------------TACTTGGATCGGAGACGGCCTGG-----------------------	23	1
	-----------------------------------------AATCCTGGATGTTGTAAGCTTT	22	1
	------------------------------------------ATCCTGGATGTTGTAAGCTTT	21	1
	-----------------TACTTGGATCGGAGACGGCCTG------------------------	22	1
	------------------------------------CTGGGAATCCTGGATGTTGTAAGCT--	25	1
cbriggsae	acgttgagtccagttagtacttggatcggagacggcctgggAATCCTGGATGTTGTAAGCTtt
	***************************************************************
	-------------------------------------------------------------------------	NM_001092591
	-------------------------------------------------------------------------	NM_177186
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001030661
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027534
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027535
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066897
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<....................................	NM_170601
cbriggsae	(((....((((((...((.(((((..((....))..))))).)).))))))..))).......	0.990 -17.60

cbriggsae

chromosome:chrIII:8639710:8639772:-1

Opposite_strand|Intronic_non-coding|NM_001092591|MGC81879 ## Same_strand|Intronic_non-coding|NM_001030661|SETD1B ## Opposite_strand|Boundary_non-coding|NM_170601|SIAE ## Opposite_strand|Exonic_non-coding|NM_170601|SIAE ## {Repeats: no}

block52 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.291	no	no	0.72/0.72	18/18/0.00	0.0	0.0	1	0	1	0	26	3	3arm	1	nd	0.33	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------CGGAAUU------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------GCGGAATTCGCGGCCAGG--------------------------	18	1
cbriggsae	aatgttgtgcatagatctttttttttcggtcgctacatacatccatttaccaataaGCGGAATTCGCGGCCAGGaaaaacaaaaaaacccgccaaaacgt
	****************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_057259
	--------------------------------------------------------------------------------------------------------------	NM_057282
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008855
	--------------------------------------------------------------------------------------------------------------	NM_061553
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067080
cbriggsae	.(((((..((..........(((((((((((((........(((.((((....)))).)))....)))))).)))))))...........))...)))))	0.940 -17.30

cbriggsae

chromosome:chrI:1517120:1517219:-1

Same_strand|Intronic_non-coding|NM_057259|l(2)37Cc ## Opposite_strand|Intronic_non-coding|NM_057282|RpLP1 ## Same_strand|Intronic_coding|NM_067080|Y66D12A.21 ## {Repeats: no}

block1210 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.021	no	no	0.39/0.39	18/18/0.00	0.0	0.0	2	0	1	0	22	19	5arm	1	nd	0.39	3	2	1	na	na

		reads	miRBase family seed
seed	-----------------------UUGACAU---------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	----------------------GTTGACATATTCCTCCAT-----------------------------------------------------------------------	18	2
cbriggsae	agtttggaacaagaacatttttGTTGACATATTCCTCCATaaagaacatgacgatgatgatatccgcgtcgttgattctttggaagattgcgattgttcttgccgtaaact
	***************************************************************************************************************
	-------------------------------------------------------------------------------------------------------------------------	NM_053514
	-------------------------------------------------------------------------------------------------------------------------	NM_018362
	-------------------------------------------------------------------------------------------------------------------------	NM_001039354
	-------------------------------------------------------------------------------------------------------------------------	NM_001033223
cbriggsae	((((((...((((((((.....((((.((...((.((((..(((((...(((((((.((.....)))))))))..))))))))).)).))))))))))))))...))))))	0.990 -29.70

cbriggsae

chromosome:chrII_random:247912:248022:1

Opposite_strand|Intronic_coding|NM_053514|Lin7a ## Opposite_strand|Intronic_non-coding|NM_018362|LIN7C ## {Repeats: no}

block4688 [novel_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.310	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	30	-4	5arm_loop	22	nd	0.38	5	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------UUGUUGU----------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------CTTGTTGTCAGCTGGGACCTT---------------------------------------------------------------	21	1
cbriggsae	ttcgaactgttggccatcaccttggagaatCTTGTTGTCAGCTGGGACCTTctttgcatatcgttctccgctcacaaacgtgaagtcttcctggttctgagtttttgcttcgaa
	******************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_029869
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020252
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_133906
	----------------------------------------------------------------------------------------------------------------------------	NM_068376
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020297
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_027016
	----------------------------------------------------------------------------------------------------------------------------	NM_079863
	----------------------------------------------------------------------------------------------------------------------------	NM_170535
	----------------------------------------------------------------------------------------------------------------------------	NM_170536
	----------------------------------------------------------------------------------------------------------------------------	NM_078585
	----------------------------------------------------------------------------------------------------------------------------	NM_167331
	----------------------------------------------------------------------------------------------------------------------------	NM_167332
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087595
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_003262
	--------------------------------------------------------------------------------------------------------------<<<<<<<<<<<<<<	NM_078127
	------------------------------------------------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_078127
	------------------------------------------------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_078127
cbriggsae	.(((((.((..(((((..(((..(((((.((.((((((.(((.((((.................)))).))).)))).)).))..)))))..)))..)).)))..)).))))).	0.870 -25.93

cbriggsae

chromosome:chrX:17977333:17977446:-1

block282 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.123	no	no	0.59/0.59	22/22/1.00	0.0	0.0	1	0	1	0	19	5	3arm	1	nd	0.27	2	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------GUUGGGU---------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------GGTTGGGTGCCTTTCGCTCTCT-------------------	22	1
cbriggsae	gggggagacggtcagacggtcagagggaattgcactggtcaatacgaacgagggaagtggtGGTTGGGTGCCTTTCGCTCTCTgtcttggcaacatttctct
	******************************************************************************************************
	----------------------------------------------------------------------------------------------------------------	NM_001069244
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_058481
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065146
cbriggsae	((((((....(((((((((..((((.(((..(((((..(((.(((...........))).)))..)).)))..))).)))))))))).)))....)))))).	1.000 -35.00

cbriggsae

chromosome:chrI:2412081:2412182:1

Opposite_strand|Intronic_non-coding|NM_001069244|Os09g0261400 ## Same_strand|Intronic_non-coding|NM_058481|ubc-3 ## Same_strand|Intronic_coding|NM_065146|H14E04.4 ## {Repeats: no}

block592 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.412	no	no	0.64/0.64	22/22/1.00	0.0	0.0	1	0	1	0	21	10	5arm	2	nd	0.18	2	1	1	na	na

		reads	miRBase family seed
seed	----------------------UGGAGCC---------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------GTGGAGCCTGGTGGTGGTGACT-------------------------------------------------------------------------	22	1
cbriggsae	gttttttttgtatcggcatatGTGGAGCCTGGTGGTGGTGACTggtccttgggcaattttctttcgaccttgccagctttcgaaatggtccacgtctgccacggcttcctcagaac
	********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075282
	------------------------------------------------------------------------------------------------------------------------------	NM_011794
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062385
cbriggsae	(((((....((...((((.(((((((.(((((.((((((((..((((...(((......)))...)))))))))).)).)))....))))))))).))))...))......)))))	0.530 -31.50

cbriggsae

chromosome:chrII:2308840:2308955:-1

Same_strand|Intronic_non-coding|NM_075282|wrs-1 ## Opposite_strand|Intronic_non-coding|NM_011794|Bpnt1 ## Same_strand|Intronic_coding|NM_062385|twk-2 ## {Repeats: no}

block3986 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.899	no	no	0.17/0.17	18/18/0.00	0.0	0.0	1	0	1	0	5	15	5arm	1	nd	0.44	3	1	1	na	na

		reads	miRBase family seed
seed	------AUUUAUG----------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----TATTTATGCACAAAAATT------------------------------------------------------------	18	1
cbriggsae	gaatcTATTTATGCACAAAAATTaatattcaaagctgttaacaatagatcgtggctatctgttcgtgtttggtcagggaatcc
	***********************************************************************************
	---------------------------------------------------------------------------------------------	NM_004906
	---------------------------------------------------------------------------------------------	NM_072582
	---------------------------------------------------------------------------------------------	NM_072930
	---------------------------------------------------------------------------------------------	NM_074360
	---------------------------------------------------------------------------------------------	NM_074930
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_074847
	---------------------------------------------------------------------------------------------	NM_074581
cbriggsae	((.(((..(((.((((...(((..(((..((...((((.....))))....))..)))..))).)))).)))....))).)).	0.430 -9.80

cbriggsae

chromosome:chrV:2904441:2904523:1

Opposite_strand|Intronic_non-coding|NM_004906|WTAP ## Opposite_strand|Intronic_coding|NM_072582|srh-200 ## Same_strand|Intronic_coding|NM_074847|srh-215 ## {Repeats: no}

block1587 [novel_lenNOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.092	no	no	0.44/0.44	18/18/0.00	0.0	0.0	1	0	1	0	20	9	5arm	1	nd	0.28	5	1	1	na	na

		reads	miRBase family seed
seed	---------------------CCAUUCA----------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------TCCATTCAGTTTTGCCAC------------------------------------------------------------------	18	1
cbriggsae	ttttgaaaaatgaaaattggTCCATTCAGTTTTGCCACaaattcaaagaagtttgagaaccttccagaactttccaggaatggataacttttagagatttaaaa
	********************************************************************************************************
	------------------------------------------------------------------------------------------------------------------	NM_001102902
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001077612
	------------------------------------------------------------------------------------------------------------------	NM_065190
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001129219
cbriggsae	.((((((...(((((....(((((((((((((((.......((((((....)))))).......)))))))......))))))))...)))))....)))))).	0.790 -19.44

cbriggsae

chromosome:chrIII:174248:174351:1

Opposite_strand|Intronic_non-coding|NM_001102902|LOC100124966 ## Same_strand|Intronic_coding|NM_001077612|zgc:153009 ## Same_strand|Intronic_non-coding|NM_001129219|nhr-121 ## {Repeats: no}

block1474 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.734	no	no	0.48/0.48	21/21/1.00	0.0	0.0	2	0	1	0	8	13	5arm	7	nd	0.29	4	2	1	na	na

		reads	miRBase family seed
seed	---------CUUACGA------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	--------GCTTACGACCATATCACGTTG-----------------------------------------------------------------	21	2
cbriggsae	gatgtgatGCTTACGACCATATCACGTTGaatgcacgccatcccgtccgatctggcaagttaagcaacgttgagtccagttagtacttggatcg
	**********************************************************************************************
	--------------------------------------------------------------------------------------------------------	NM_001092591
	--------------------------------------------------------------------------------------------------------	NM_177186
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001030661
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027534
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027535
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066897
	................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.	NM_170601
cbriggsae	(((.(((((((.(((((((....((((((...((..((((((......))..))))..))....)))))))).)))..)).)))).))).))).	0.500 -20.70

cbriggsae

chromosome:chrIII:8640681:8640774:-1

Opposite_strand|Intronic_non-coding|NM_001092591|MGC81879 ## Same_strand|Intronic_non-coding|NM_001030661|SETD1B ## Opposite_strand|Boundary_non-coding|NM_170601|SIAE ## {Repeats: no}

block316 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.367	no	no	0.41/0.43	21/22/1.00	0.5	0.0	2	0	1	0	6	14	3arm	1	nd	0.36	4	2	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------UCAUAGU-------------------	1	novel
seed	---------------------------------------------------------GUCAUAG--------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------TGTCATAGTTACACTGATGGGT------	22	1
	---------------------------------------------------------GTCATAGTTACACTGATGGGT------	21	1
cbriggsae	gcgttttccatgtgatgataaaactatagcgtgagctggcagcagtgatcgctaaaTGTCATAGTTACACTGATGGGTttttgt
	************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020367
	----------------------------------------------------------------------------------------------	NM_031809
	----------------------------------------------------------------------------------------------	NM_134696
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001082005
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_058685
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001021974
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007842
cbriggsae	(((...((((((((.((((...((..(((((...((((....))))...)))))...))....)))))))..)))))....)))	0.570 -18.40

cbriggsae

chromosome:chrI:4952467:4952550:1

Same_strand|Intronic_non-coding|NM_020367|PARP11 ## Opposite_strand|Intronic_coding|NM_031809|Cngb1 ## Same_strand|Intronic_coding|NM_058685|Y54E10BL.3 ## {Repeats: no}

block2298 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.753	no	no	0.65/0.65	23/23/1.00	0.0	0.0	1	0	1	0	13	12	5arm	1	nd	0.35	4	1	1	na	na

		reads	miRBase family seed
seed	--------------GCCUCUG------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------AGCCTCTGGAACCACGACCGCGA---------------------------------------------------------------------	23	1
cbriggsae	tgggtcccagtagAGCCTCTGGAACCACGACCGCGAgctcctcctgattgttgtgtacgggttactgcttccgccctcgatgtttgaacacggctgctatgacct
	*********************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001026518
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067755
	-------------------------------------------------------------------------------------------------------------------	NM_001047596
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064510
	-------------------------------------------------------------------------------------------------------------------	NM_075282
cbriggsae	.(((((...((((((((....((((..(((..((((((....((((((......)).)))).....)))..)))..)))..))))......)))).)))))))))	0.740 -28.00

cbriggsae

chromosome:chrIV:12950723:12950827:-1

Same_strand|Intronic_coding|NM_001026518|Y105E8A.29 ## Same_strand|Intronic_non-coding|NM_067755|xpc-1 ## Opposite_strand|Intronic_non-coding|NM_001047596|tag-349 ## {Repeats: no}

block1324 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.757	no	no	0.48/0.48	25/25/0.00	0.0	0.0	1	0	1	0	25	11	5arm	1	nd	0.40	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------UUGUCUG---------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------GTTGTCTGAGAGCTCTATTGGTGTC----------------------------------------------------------------------	25	1
cbriggsae	acgatttattgaaaaaaagttaaacGTTGTCTGAGAGCTCTATTGGTGTCacaaaacgagcgagtagttcgatggtatacgcaagttgcactcctgaaaatttgaattgccaattattcg
	************************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------------	NM_001011629
	----------------------------------------------------------------------------------------------------------------------------------	NM_172925
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065286
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001093260
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009573
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_130279
cbriggsae	.(((...((((..((....(((((.....((.(((.((....(((((((.((....(((((.....)))))...)))))).)))...)).)))..))...))))).))..))))...)))	0.560 -21.10

cbriggsae

chromosome:chrIII:2283300:2283419:-1

Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_non-coding|NM_065286|Y53G8AR.6 ## {Repeats: no}

block1856 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.463	no	no	0.33/0.38	18/21/0.50	0.0	1.5	2	0	1	0	7	3	3arm	1	nd	0.39	5	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------------AUUAUGA--------------------	2	novel
		len	cloning frequencies
			AF16
	--------------------------------------TATTATGAACACTTGAGGAGG-------	21	1
	--------------------------------------TATTATGAACACTTGAGG----------	18	1
cbriggsae	agtgggaggtatggaagttttagtgatgttgtgtgtagTATTATGAACACTTGAGGAGGtttcact
	******************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070275
cbriggsae	(((((((.......((((.((.(((((((((....))))))))).)).)))).......)))))))	0.880 -8.54

cbriggsae

chromosome:chrIII_random:29581:29646:-1

Same_strand|Intronic_coding|NM_070275|Y37A1A.2 ## {Repeats: no}

block1886 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.166	no	no	0.50/0.63	21/27/0.90	0.0	0.3	7	0	1	0	15	-8	3arm	20	nd	0.52	7	10	1	na	na

		reads	miRBase family seed
seed	-------------------------------------CCUUAGG------------------------------	7	novel
seed	---------------------------------------------CGCUGGU----------------------	1	novel
seed	-----------------------------------------AGGUCGC--------------------------	1	novel
seed	----------------------------------------UAGGUCG---------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------TCCTTAGGTCGCTGGTTCGAATC---------------	23	5
	------------------------------------TCCTTAGGTCGCTGGTTCGAAT----------------	22	2
	----------------------------------------TAGGTCGCTGGTTCGAATCCG-------------	21	1
	---------------------------------------TTAGGTCGCTGGTTCGAATCCG-------------	22	1
	--------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA---	27	1
cbriggsae	agttggtagagcggaggactgtagagtcagtgggtaTCCTTAGGTCGCTGGTTCGAATCcggctcgacggattt
	**************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_117106
	------------------------------------------------------------------------------------	NM_065270
cbriggsae	((((.((.((((...(((.....((..((((((...........))))))..))...))).)))).)).)))).	0.990 -21.90

cbriggsae

chromosome:chrIII_random:796103:796176:1

Same_strand|Intronic_non-coding|NM_117106|NIP5;1/NLM6/NLM8 ## Opposite_strand|Intronic_coding|NM_065270|heh-1 ## {Repeats: no}

block1655 [novel_lenNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.56/0.56	18/18/0.00	0.0	0.0	1	0	1	0	11	17	3arm	1	nd	0.22	2	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------------------------------CCGUCAA---------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------------------------------------------TCCGTCAACATCGTCCAG-----------	18	1
cbriggsae	ttttccgagtagctaaatgataatgttggattagctggattcttctcgagtagggcagtaaaataacgctcaactgcctgcttgatggaTCCGTCAACATCGTCCAGaaatcgggaga
	**********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214211
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001035248
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_057428
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001062274
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001005123
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001091987
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001069872
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001069872
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205075
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001037113
	--------------------------------------------------------------------------------------------------------------------------------	NM_133195
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001019821
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_003333
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_003333
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001033930
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001076363
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001124194
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001126212
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001009286
	--------------------------------------------------------------------------------------------------------------------------------	NM_204254
	--------------------------------------------------------------------------------------------------------------------------------	NM_001108057
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020265
cbriggsae	((((((((....((....((..(((((((......(((((((...(((((((.((((((.............))))))))))))).))))))))))))))..)).))...))))))))	0.990 -40.32

cbriggsae

chromosome:chrIII:3285359:3285476:1

Same_strand|Intronic_coding|NM_214211|UBA52 ## Opposite_strand|Intronic_non-coding|NM_133195|Brunol4 ## Opposite_strand|Intronic_coding|NM_001108057|Bcl11b ## Same_strand|Intronic_non-coding|NM_020265|Dkk2 ## {Repeats: no}

block2376 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.942	no	no	0.52/0.52	21/21/1.00	0.0	0.0	3	0	1	0	3	16	5arm	1	nd	0.29	3	3	1	na	na

		reads	miRBase family seed
seed	----ACAGAGU------------------------------------------------------------------------------------	3	novel
		len	cloning frequencies
			AF16
	---TACAGAGTTCGCGTGTGTGGT-----------------------------------------------------------------------	21	3
cbriggsae	caaTACAGAGTTCGCGTGTGTGGTaaaaatcatttttcagtcccctgccaaatcttgaagtgtatgttcccatgttaaacttacaatcgtattgg
	***********************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070458
	---------------------------------------------------------------------------------------------------------	NM_182297
	---------------------------------------------------------------------------------------------------------	NM_070440
cbriggsae	((((((.(((((.(((((...((.((....((((((.(((....))).........))))))....)))))))))..)))))......)))))).	0.410 -12.20

cbriggsae

chromosome:chrIV:1104351:1104445:1

Same_strand|Intronic_non-coding|NM_070458|Y73F8A.24 ## Opposite_strand|Intronic_non-coding|NM_182297|B0546.4 ## Opposite_strand|Intronic_coding|NM_070440|Y73F8A.5 ## {Repeats: no}

block4562 [novel_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.749	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	8	9	3arm	49	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------CGUUCGU--------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------GCGTTCGTGGTGTAATGGTC--------	20	1
cbriggsae	tccaggattatcatccccggcatccttttttctgaagaaagccaGCGTTCGTGGTGTAATGGTCagcatgga
	************************************************************************
	----------------------------------------------------------------------------------	NM_001108848
	----------------------------------------------------------------------------------	NM_133381
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001045626
	----------------------------------------------------------------------------------	NM_004845
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001086847
	----------------------------------------------------------------------------------	NM_001065160
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001082087
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001017762
cbriggsae	((((.((((((.((.((((((...((((((.....))))))...))...)).)).)).))))))....))))	0.480 -14.40

cbriggsae

chromosome:chrX:13290230:13290301:-1

block3808 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.433	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	20	0	5arm	1	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------CACACUG----------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------ACACACTGGCTAGGTCTAGGA---------------------------------------------------------	21	1
cbriggsae	gttttgatgacgactggcgcACACACTGGCTAGGTCTAGGAgcgcagggggaatcatttgggaaagaggagagtgtgtttgctggggaggaggcaaga
	**************************************************************************************************
	------------------------------------------------------------------------------------------------------------	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182351
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011821
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007904
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134696
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001040230
	------------------------------------------------------------------------------------------------------------	NM_001041377
	------------------------------------------------------------------------------------------------------------	NM_001042144
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079844
	------------------------------------------------------------------------------------------------------------	NM_207352
cbriggsae	.(((((.......((((((.(((((((..((...(((..((...............))..)))....))..))))))).))))))........)))))	0.710 -21.52

cbriggsae

chromosome:chrV:11310270:11310367:-1

block2939 [novel_lenNOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.527	no	no	0.24/0.24	25/25/0.00	0.0	0.0	1	0	1	0	25	-1	3arm	3	nd	0.16	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------UGCAAAU------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------TTGCAAATTAAATGGTTATGGTTTT-------------------------	25	1
cbriggsae	tagtactactagtttaaaaaattagaaatcatagtataattttagtatatttaaTTGCAAATTAAATGGTTATGGTTTTtagtaagataggataatatagtcta
	********************************************************************************************************
cbriggsae	(((.((((....((((....(((((((((((((((.((((((..(((........)))))))))....)))))))))))))))....))))......)))))))	0.490 -12.90

cbriggsae

chromosome:chrM:4370:4473:-1

{Repeats: no}

block2851 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.115	no	no	0.32/0.32	22/22/1.00	0.0	0.0	1	0	1	0	11	3	5arm	1	nd	0.18	2	1	1	na	na

		reads	miRBase family seed
seed	------------UAUCAAU-------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------TTATCAATTCCTGAACAAAGCT-----------------------------------------------------------------------	22	1
cbriggsae	ttagttccagtTTATCAATTCCTGAACAAAGCTcataaaataaatcacgaaatgagcgaagaaacatgttcaattggaaatcaccgtggttcaatggattctga
	********************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_079659
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_206502
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_169746
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_169747
	------------------------------------------------------------------------------------------------------------------	NM_001095500
	------------------------------------------------------------------------------------------------------------------	NM_001024205
	------------------------------------------------------------------------------------------------------------------	NM_001077467
	------------------------------------------------------------------------------------------------------------------	NM_001078490
	------------------------------------------------------------------------------------------------------------------	NM_001093393
cbriggsae	((((.((((....((((.((((((((((..((((((...............)))))).........))))))...)))).......))))....))))..))))	0.410 -19.26

cbriggsae

chromosome:chrIV:14793450:14793553:1

Same_strand|Intronic_non-coding|NM_079659|cher ## Opposite_strand|Intronic_coding|NM_001095500|LOC496349 ## Opposite_strand|Intronic_non-coding|NM_001024205|Nufip2 ## {Repeats: no}

block360 [novel_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.019	no	no	0.29/0.29	21/21/1.00	0.0	0.0	1	0	1	0	19	15	3arm	12	nd	0.43	5	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AUAUGAU--------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------TATATGATTTTTGGAACCTAG-------------------	21	1
cbriggsae	tagctaagatcaaagtgtagtatctgttcttatcgtattaacctacggtatacactcgaatgagtgtaataaaggtTATATGATTTTTGGAACCTAGgaaagactcggggcttgct
	********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008855
	------------------------------------------------------------------------------------------------------------------------------	NM_176035
	------------------------------------------------------------------------------------------------------------------------------	NM_205985
	------------------------------------------------------------------------------------------------------------------------------	NM_205986
	------------------------------------------------------------------------------------------------------------------------------	NM_001011629
	------------------------------------------------------------------------------------------------------------------------------	NM_102365
	------------------------------------------------------------------------------------------------------------------------------	NM_001084127
	------------------------------------------------------------------------------------------------------------------------------	NM_001009899
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_015566
cbriggsae	.(((.(((.((..(((.........(((((.((((((.((((((...((.(((((((....)))))))))..))))))))))))....))))).........)))..)).))))))	0.900 -29.47

cbriggsae

chromosome:chrI:8185586:8185701:1

Same_strand|Intronic_non-coding|NM_008855|Prkcb1 ## Opposite_strand|Intronic_coding|NM_176035|nAcRalpha-34E ## Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## {Repeats: no}

block588 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.330	no	no	0.44/0.44	18/18/0.00	0.0	0.0	1	0	1	0	28	-2	5arm_loop	2	nd	0.39	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------UUGUAAA--------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------GTTGTAAAGTGTCTCCTG----------------------------------------------------	18	1
cbriggsae	tattttgtttttcacatttgatcagtttGTTGTAAAGTGTCTCCTGaagggtagagttcttacagcaatgatatgctcgtatttgacctgtaaaatat
	**************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001005457
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_058490
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075282
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182230
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001104235
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001104236
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_206458
cbriggsae	(((((((....(((.((.(((.((..(((((((((....(((((.....)).)))....))))))))).....)).))).)).)))....))))))).	0.840 -17.70

cbriggsae

chromosome:chrII:1963912:1964009:-1

Same_strand|Intronic_coding|NM_001005457|adsl ## Same_strand|Intronic_non-coding|NM_058490|Y71G12B.8 ## {Repeats: no}

block2045 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.807	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	21	8	3arm	1	nd	0.29	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------UUUUUCG----------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------TTTTTTCGAGTTATGGCGCGT---------------------	21	1
cbriggsae	attcaaaaatcacagtttcaaaaagctactaattttaaagtttacaaggagtgaatgaTTTTTTCGAGTTATGGCGCGTtcaaagttgatttccaggagt
	****************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105717
	--------------------------------------------------------------------------------------------------------------	NM_198022
	--------------------------------------------------------------------------------------------------------------	NM_020066
cbriggsae	((((..((((((...(((.((...((((.((((((.(((((((((.....)))))).....))).))))))))))...)).)))..))))))....))))	0.740 -12.60

cbriggsae

chromosome:chrIV:3211748:3211847:-1

Same_strand|Intronic_non-coding|NM_001105717|Dpysl2 ## Opposite_strand|Intronic_non-coding|NM_198022|Tnrc6c ## Opposite_strand|Intronic_coding|NM_020066|FMN2 ## {Repeats: no}

block2998 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.175	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	21	-4	3arm_loop	1	nd	0.58	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------ACUUCUA--------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------CACTTCTACAAATGCGTCT---------------------	19	1
cbriggsae	tcaggatttttcaggaaatcaacggatgatcagattCACTTCTACAAATGCGTCTagccattgcaaaaatactgaa
	****************************************************************************
cbriggsae	((((.(((((((((.......(((.((....(((......)))....)).))).......))).)))))).)))).	0.860 -12.94

cbriggsae

chromosome:chrUn:1282467:1282542:-1

{Repeats: no}

block267 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.084	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	10	1	5arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	-----------AAUGAGU--------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------AAATGAGTGAAAACGTTCGCT-------------------------------------------	21	1
cbriggsae	ggagctaggcAAATGAGTGAAAACGTTCGCTacgttttggcgggtttttttgtttttcctggccgcgaattccg
	**************************************************************************
	------------------------------------------------------------------------------------	NM_057259
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_057282
	------------------------------------------------------------------------------------	NM_008855
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061553
	------------------------------------------------------------------------------------	NM_067080
cbriggsae	(((((((((.....(((..((((..(((((((.....)))))))..))))..)))..)))))).......))).	0.990 -22.11

cbriggsae

chromosome:chrI:1517089:1517162:1

Opposite_strand|Intronic_non-coding|NM_057259|l(2)37Cc ## Same_strand|Intronic_non-coding|NM_057282|RpLP1 ## Opposite_strand|Intronic_coding|NM_067080|Y66D12A.21 ## {Repeats: no}

block2003 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.492	no	no	0.35/0.35	20/20/1.00	0.0	0.0	1	0	1	0	6	31	3arm	2	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------------------UCGUUGU------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------------------------TTCGTTGTGTGTGTTGTTAT------	20	1
cbriggsae	tttcagataaattacgaaaatggggttcttgagattttttgaaatttactgttttatattctccagttatcagaaacttgggaaaatttttcaaTTCGTTGTGTGTGTTGTTATaggagt
	************************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_060112
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020714
cbriggsae	.(((..((((..((((..((((((.((((..((..(((((((.....((((............))))..)))))))))..))))..........))))))...))))...))))..))).	0.540 -20.30

cbriggsae

chromosome:chrIV:2448334:2448453:-1

Same_strand|Intronic_non-coding|NM_060112|skr-1 ## {Repeats: no}

block1620 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.117	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	12	2	3arm	49	nd	0.30	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------CGUUCGU------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------GCGTTCGTGGTGTAATGGTC------------	20	1
cbriggsae	gcgtctctctgccacgccctcgctttatctacgcgtttccccccttctctctcactgcGCGTTCGTGGTGTAATGGTCagcatggatgcc
	******************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027762
	----------------------------------------------------------------------------------------------------	NM_075282
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061817
	----------------------------------------------------------------------------------------------------	NM_071129
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071129
	----------------------------------------------------------------------------------------------------	NM_068002
	----------------------------------------------------------------------------------------------------	NM_001129219
	----------------------------------------------------------------------------------------------------	NM_003107
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001026513
	----------------------------------------------------------------------------------------------------	NM_001027762
	----------------------------------------------------------------------------------------------------	NM_001090026
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079600
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_172541
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064860
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067650
	----------------------------------------------------------------------------------------------------	NM_067787
	----------------------------------------------------------------------------------------------------	NM_067659
	----------------------------------------------------------------------------------------------------	NM_075459
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061965
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075282
	----------------------------------------------------------------------------------------------------	NM_070558
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075513
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001037901
	----------------------------------------------------------------------------------------------------	NM_064510
	----------------------------------------------------------------------------------------------------	NM_072208
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065010
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065104
	----------------------------------------------------------------------------------------------------	NM_077859
	----------------------------------------------------------------------------------------------------	NM_001129266
	----------------------------------------------------------------------------------------------------	NM_001027789
cbriggsae	((((((..((((((((((..((........((((((....................)))))).)).)))))...)).)))...)))))).	0.940 -23.55

cbriggsae

chromosome:chrIII:1725529:1725618:1

Same_strand|Intronic_coding|NM_001027762|smr-1 ## Opposite_strand|Intronic_non-coding|NM_075282|wrs-1 ## Same_strand|Intronic_non-coding|NM_061817|cct-3 ## Opposite_strand|Intronic_coding|NM_071129|Y32G9A.10 ## {Repeats: no}

block2194 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.075	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	27	2	3arm	1	nd	0.43	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------UCCAGUG----------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------TTCCAGTGTTCTTGTTTTAGC---------------------------	21	1
cbriggsae	tctgtatttctgtttcataaagtttagaaattgattcttttgaggcttcgaatagTTCCAGTGTTCTTGTTTTAGCcttttttttgcagaaaataaacacaga
	*******************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066961
cbriggsae	(((((.(((((((.....((((.((((((...((.....(((..(((......)))..)))...))...)))))).)))).....)))))))......)))))	0.990 -20.00

cbriggsae

chromosome:chrIV:8832447:8832549:-1

Same_strand|Intronic_non-coding|NM_066961|W09D10.4 ## {Repeats: no}

block300 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.607	no	no	0.55/0.55	22/22/1.00	0.0	0.0	2	0	1	0	20	-3	3arm_loop	1	nd	0.41	3	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------ACACGAG----------------------------------	2	novel
		len	cloning frequencies
			AF16
	----------------------------------GACACGAGTTGTCGGACTGGTA--------------------	22	2
cbriggsae	ctatataacacaaaagaaacagttagaaacgagtGACACGAGTTGTCGGACTGGTAtcatcatggtggtctatatg
	****************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_026450
	--------------------------------------------------------------------------------------	NM_001093227
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_177350
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009930
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_058794
	--------------------------------------------------------------------------------------	NM_001024290
	--------------------------------------------------------------------------------------	NM_175692
	--------------------------------------------------------------------------------------	NM_001078787
	--------------------------------------------------------------------------------------	NM_001109774
	--------------------------------------------------------------------------------------	NM_001114303
	--------------------------------------------------------------------------------------	NM_001114304
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001089360
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_059581
	--------------------------------------------------------------------------------------	NM_121223
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_115574
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_021399
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079883
cbriggsae	.((((((.(((....((..(((((.(((((..((...))..))).)).)))))...))......)))...))))))	0.520 -11.40

cbriggsae

chromosome:chrI:4057087:4057162:1

Same_strand|Intronic_non-coding|NM_026450|Zfp169 ## Opposite_strand|Intronic_coding|NM_001093227|MGC80275 ## Same_strand|Intronic_coding|NM_009930|Col3a1 ## Opposite_strand|Intronic_non-coding|NM_001024290|Gal3st3 ## {Repeats: no}

block3124 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.492	no	no	0.35/0.38	20/22/1.00	0.0	1.0	3	0	1	0	22	7	3arm	2	nd	0.18	2	3	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------GUGAGUU------------------------------------	3	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------AGTGAGTTCATAAAGCAAGT------------------------	20	1
	------------------------------------------------------AGTGAGTTCATAAAGCAAGTCT----------------------	22	1
	------------------------------------------------------AGTGAGTTCATAAAGCAAGTC-----------------------	21	1
cbriggsae	ttgatatagcataagaagtgcatttgttttaagcgcaaaagatataagtcaactAGTGAGTTCATAAAGCAAGTCTtctaaatttgttctaggttaaa
	**************************************************************************************************
cbriggsae	(((((.(((.((((((((...(((((((((((((.((...(((....)))......)).)))..))))))))))))))).....))).))).))))).	0.840 -14.60

cbriggsae

chromosome:chrUn:4428655:4428752:-1

{Repeats: no}

block2940 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.335	no	no	0.24/0.24	25/25/0.00	0.0	0.0	1	0	1	0	11	13	3arm	3	9	0.24	1	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------GUAACAU----------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------------TGTAACATTGTGATGAAGATTTATT-----------	25	1
cbriggsae	acttactatgttgttagtcattttcattatgttttaagactaggtgcagtttttggtatttttacaggTGTAACATTGTGATGAAGATTTATTacagggtatgt
	********************************************************************************************************
	>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++	NM_001097928
cbriggsae	((.((((.(((.((.((((.((.((((.(((((.((.....((((((........)))))).......)).))))).)))).)).)))).)).))).)))).))	0.450 -17.90

cbriggsae

chromosome:chrM:4795:4898:-1

Same_strand|Intronic_non-coding|NM_001097928|LOC100049086 ## {Repeats: no}

block2149 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.059	no	no	0.26/0.26	19/19/0.00	0.0	0.0	1	0	1	0	2	16	5arm	1	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	---UUAGCUA----------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--TTTAGCTAAGACAAATATC-----------------------------------------------------------------	19	1
cbriggsae	gtTTTAGCTAAGACAAATATCaatttttacttttccattccttcgaaaataatctttggaaaaccaatttgtctacactttgaaca
	**************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001094577
	------------------------------------------------------------------------------------------------	NM_134696
	------------------------------------------------------------------------------------------------	NM_026485
	------------------------------------------------------------------------------------------------	NM_004845
cbriggsae	((((.((...((((((((............(((((((...................)))))))...))))))))...))..)))).	0.410 -11.57

cbriggsae

chromosome:chrIV:7003227:7003312:-1

Same_strand|Intronic_non-coding|NM_001094577|LOC494739 ## Opposite_strand|Intronic_coding|NM_134696|CG2839 ## Opposite_strand|Intronic_non-coding|NM_026485|Trabd ## {Repeats: no}

block4133 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.440	no	no	0.37/0.37	19/19/0.00	0.0	0.0	1	0	1	0	24	11	5arm	1	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------AUUUGUU------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------GATTTGTTAGTCATCGGTT-------------------------------------------------------------------	19	1
cbriggsae	gagatcagaatttgaaatttagaaGATTTGTTAGTCATCGGTTgttcactgtcgttacgaattcgagcacttggtcatagagtttcttcttcgcgtcttgtggaatctct
	**************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	------------------------------------------------------------------------------------------------------------------------	NM_070507
	------------------------------------------------------------------------------------------------------------------------	NM_001022613
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007842
	------------------------------------------------------------------------------------------------------------------------	NM_001047733
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001298
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001056446
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001066295
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001066297
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_137186
	------------------------------------------------------------------------------------------------------------------------	NM_003299
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_212567
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079878
	................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_074285
cbriggsae	((((((...((..((.....((((((....(((...(((((.(((((....(((...)))....))))).)))))..)))....)))))).....))..)).)).)))).	0.940 -23.20

cbriggsae

chromosome:chrV:11749799:11749908:1

Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_non-coding|NM_070507|Y105C5B.19 ## Opposite_strand|Intronic_coding|NM_001022613|SPBC215.13 ## Same_strand|Intronic_coding|NM_007842|Dhx9 ## Opposite_strand|UTR_non-coding|NM_074285|T01C3.2 ## {Repeats: no}

block271 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.994	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	10	3	5arm	1	nd	0.20	1	1	1	na	na

		reads	miRBase family seed
seed	-----------AUGAUGU-----------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------AATGATGTAGGCGAGACACG-----------------------------------------------	20	1
cbriggsae	gagaatgagcAATGATGTAGGCGAGACACGagacccattccgtgtgaatttcctctgatgatgacgagttgattatc
	*****************************************************************************
	---------------------------------------------------------------------------------------	NM_068079
	---------------------------------------------------------------------------------------	NM_002073
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067597
cbriggsae	((.(((.(((.((.((.((((.((((((((.((.....)))))))....))).)))))).)).....))).))).))	0.470 -10.00

cbriggsae

chromosome:chrI:1684293:1684369:1

Opposite_strand|Intronic_non-coding|NM_068079|ubc-1 ## Same_strand|Intronic_non-coding|NM_067597|Y55F3BR.6 ## {Repeats: no}

block496 [novel_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.339	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	8	20	3arm	49	nd	0.40	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------CGUUCGU--------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------GCGTTCGTGGTGTAATGGTC--------	20	1
cbriggsae	ccagcgcgacaacgccgccgcgcccctcccttcttcattaccgccttgcgtcccttctcctcccggcGCGTTCGTGGTGTAATGGTCagcatgga
	***********************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001012534
	---------------------------------------------------------------------------------------------------------	NM_075505
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_013672
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214128
cbriggsae	(((((..(((.(((((((((((((.................(((...)))..............))))))...)))))))....))).)).))).	0.980 -29.18

cbriggsae

chromosome:chrI_random:2959653:2959747:-1

Same_strand|Intronic_non-coding|NM_001012534|TOB2 ## Opposite_strand|Intronic_non-coding|NM_075505|psa-1 ## {Repeats: no}

block91 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.093	no	no	0.67/0.67	18/18/0.00	0.0	0.0	1	0	1	0	4	4	5arm	1	nd	0.17	2	1	1	na	na

		reads	miRBase family seed
seed	-----ACCGCCC-----------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----CACCGCCCGGTCGCTAAT-------------------------------------	18	1
cbriggsae	ccatCACCGCCCGGTCGCTAATtattatgcttccggtatctggtggcccacggagtgga
	***********************************************************
	---------------------------------------------------------------------	NM_026450
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_175692
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001037394
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_104594
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031795
	---------------------------------------------------------------------	NM_115574
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001124041
cbriggsae	......((((((((((((((..((((........))))..))))))))...)).)))).	0.800 -19.10

cbriggsae

chromosome:chrI:3667431:3667489:-1

Opposite_strand|Intronic_non-coding|NM_026450|Zfp169 ## Same_strand|Intronic_non-coding|NM_175692|A930034L06Rik ## Opposite_strand|Intronic_coding|NM_115574|NAP57 ## {Repeats: no}

block3354 [novel_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.504	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	29	-2	5arm_loop	3	nd	0.14	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------GUGUUGG---------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------AGTGTTGGCATTTTTCGTTGT--------------------------------------------------------------	21	1
cbriggsae	cggggttttgagcagcccgcatctcattcAGTGTTGGCATTTTTCGTTGTgaagcaaatgaattgacaggtgccggcggagcagaaatttgatgagaagagctggaccacgg
	****************************************************************************************************************
cbriggsae	((.((((.....((((.....(((((.(((((((((((((((((((((........)))))).....)))))))))))..........)))))))))...)))))))).)).	0.550 -29.60

cbriggsae

chromosome:chrUn:7249713:7249824:-1

{Repeats: no}

block632 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.256	no	no	0.57/0.57	21/21/1.00	0.0	0.0	2	0	1	0	11	1	3arm	1	nd	0.38	3	2	1	na	na

		reads	miRBase family seed
seed	----------------------------------------UUGACUG------------------------	2	novel
		len	cloning frequencies
			AF16
	---------------------------------------GTTGACTGGTGTCTGACAGCG-----------	21	2
cbriggsae	ctcctcgttcgatgctccggtggttccgttgacggctccGTTGACTGGTGTCTGACAGCGtccctgggaga
	***********************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_006287
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009829
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039276
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_201578
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001114006
	<<<<<<<<<<<<<<<<<<<<<<<------------------------------------<<<<<<<<<<<<<<<<<<<<<<	NM_064658
cbriggsae	(((((.....((((((.(((.....((((..(((....)))..)).))...)))..))))))...))))).	0.990 -25.20

cbriggsae

chromosome:chrII:4309103:4309173:-1

Same_strand|Intronic_non-coding|NM_006287|TFPI ## Same_strand|Intronic_coding|NM_201578|psmd12 ## Opposite_strand|Boundary_coding|NM_064658|tac-1 ## {Repeats: no}

block758 [novel_lenNOK_Multihit_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.238	no	no	0.62/0.62	26/26/0.00	0.0	0.0	2	0	1	0	6	-3	3arm_loop	12	nd	0.23	2	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------------GUGGGAC------------------------	2	novel
		len	cloning frequencies
			AF16
	--------------------------------------GGTGGGACGGATTGAGCCATGGCGAT------	26	2
cbriggsae	agacgatcttggcgtttggttgggtttggatgtctcctGGTGGGACGGATTGAGCCATGGCGATggtttg
	**********************************************************************
	--------------------------------------------------------------------------------	NM_071091
	--------------------------------------------------------------------------------	NM_004845
cbriggsae	((((.(((...((...(((((.((((....((((.((....)))))))))).)))))..))))).)))).	0.680 -19.40

cbriggsae

chromosome:chrII:9962808:9962877:-1

Opposite_strand|Intronic_coding|NM_071091|gst-21 ## Opposite_strand|Intronic_non-coding|NM_004845|PCYT1B ## {Repeats: no}

block3498 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.013	no	no	0.30/0.30	20/20/1.00	0.0	0.0	2	0	1	0	6	3	3arm	3	nd	0.15	1	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------ACACAAG------------------	2	novel
		len	cloning frequencies
			AF16
	----------------------------------------TACACAAGATTACAACTCTA------	20	2
cbriggsae	ttaaatggggttttagtttagtaaaaatatgtgttttgcaTACACAAGATTACAACTCTAtttggg
	******************************************************************
cbriggsae	((((((((((((.((((((.((.....(((((.....))))).)).)))))).)))))))))))).	0.940 -15.80

cbriggsae

chromosome:chrUn:4254899:4254964:1

{Repeats: no}

block106 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.014	no	no	0.52/0.52	21/21/1.00	0.0	0.0	2	0	1	0	15	0	3arm	1	nd	0.14	2	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------UUCCAGG----------------------------	2	novel
		len	cloning frequencies
			AF16
	--------------------------------------------GTTCCAGGTTTGAAGCATGCG---------------	21	2
cbriggsae	cacaggagacgttagttgtaagctccagaacctttcggaatgtaGTTCCAGGTTTGAAGCATGCGacacggatcaaatgt
	********************************************************************************
	------------------------------------------------------------------------------------------	NM_020367
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011821
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079844
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134696
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_203923
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001086021
	------------------------------------------------------------------------------------------	NM_001052684
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001062761
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001069064
	------------------------------------------------------------------------------------------	NM_001006185
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_102566
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_113830
	------------------------------------------------------------------------------------------	NM_001023814
	------------------------------------------------------------------------------------------	NM_057433
	------------------------------------------------------------------------------------------	NM_001022024
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_102559
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001019816
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_116080
	------------------------------------------------------------------------------------------	NM_125613
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_124024
cbriggsae	.(((.((..(((..((((((.(((...((((((...(((((...)))))))))))..))).)))))))))..))...)))	1.000 -25.80

cbriggsae

chromosome:chrI:4447942:4448021:-1

Opposite_strand|Intronic_non-coding|NM_020367|PARP11 ## Same_strand|Intronic_non-coding|NM_011821|Gpc6 ## Same_strand|Intronic_coding|NM_134696|CG2839 ## Opposite_strand|Intronic_coding|NM_001006185|DDX55 ## {Repeats: no}

block4698 [novel_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.546	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	29	8	3arm	22	nd	0.52	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------UUGUUGU------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------------CTTGTTGTCAGCTGGGACCTT-----------------------------	21	1
cbriggsae	ctgatgtgagtgaagtcctctcgattatgtgttctggcttcgaactgttggccatcaccttggagaatCTTGTTGTCAGCTGGGACCTTctttgcatatcgttctccactgatgtgag
	**********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_029869
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020252
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_133906
	--------------------------------------------------------------------------------------------------------------------------------	NM_068376
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020297
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_027016
	--------------------------------------------------------------------------------------------------------------------------------	NM_079863
	--------------------------------------------------------------------------------------------------------------------------------	NM_170535
	--------------------------------------------------------------------------------------------------------------------------------	NM_170536
	--------------------------------------------------------------------------------------------------------------------------------	NM_078585
	--------------------------------------------------------------------------------------------------------------------------------	NM_167331
	--------------------------------------------------------------------------------------------------------------------------------	NM_167332
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087595
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_003262
	--------------------------------------------------------------------------------------------------------------------------------	NM_078127
	--------------------------------------------------------------------------------------------------------------------------------	NM_078127
	--------------------------------------------------------------------------------------------------------------------------------	NM_078127
cbriggsae	((.((((.((((.((......(((.(((((((((..(((.(((...(((..(((......)))..)))....)))..)))..)))).......))))))))..)).)))).)))).))	0.870 -29.11

cbriggsae

chromosome:chrX:17979668:17979785:-1

block2664 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.355	no	no	0.26/0.26	19/19/0.00	0.0	0.0	1	0	1	0	9	-4	3arm_loop	1	nd	0.37	3	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------UUUAACU--------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------------------TTTTAACTTTTCTCTGTCT---------	19	1
cbriggsae	tgtttcactgttattttttcagacaaggtttcaaaattgtactacTTTTAACTTTTCTCTGTCTagtagaaca
	*************************************************************************
	-----------------------------------------------------------------------------------	NM_066961
	-----------------------------------------------------------------------------------	NM_064619
cbriggsae	.(((..((((.........((((.((((((...................))))))..))))..))))..))).	0.960 -8.01

cbriggsae

chromosome:chrIV:8616854:8616926:1

Opposite_strand|Intronic_non-coding|NM_066961|W09D10.4 ## {Repeats: no}

block4776 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.734	no	no	0.50/0.50	26/26/0.00	0.0	0.0	1	0	1	0	1	13	5arm	1	nd	0.50	4	1	1	na	na

		reads	miRBase family seed
seed	--UUUGACC------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-GTTTGACCCCCAAAGGCTGTAAATGG------------------------------------------------------	26	1
cbriggsae	cGTTTGACCCCCAAAGGCTGTAAATGGaaccatcggcatcgcaagatttttttttccagacggaagtggctgcccattcgg
	*********************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001031326
cbriggsae	((..((....(((....((((...(((((........(((....)))......))))).))))...))).....))..)).	0.480 -17.44

cbriggsae

chromosome:chrX:19975759:19975839:-1

Same_strand|Intronic_non-coding|NM_001031326|CLK2 ## {Repeats: no}

block1962 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.127	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	26	4	5arm	1	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------------UGUCCAA------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------GTGTCCAACAGCTTCCTTGAG-----------------------------------------------------------------	21	1
cbriggsae	acggctttctcagcgtggcatttggcGTGTCCAACAGCTTCCTTGAGctcgctgcccttctgagctcccgagcatcctggcttcacgtcggagaagacgcgctttcctccgt
	****************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064155
	--------------------------------------------------------------------------------------------------------------------------	NM_113688
	-----------------------------------------<<<<<<<<<<<<<<<-----------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_070415
	-----------------------------------------<<<<<<<<<<<<<<<-----------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_001129339
cbriggsae	((((.......((((((...(((((((((.(((...((((....(((((((.........)))))))..))))....)))...))))))))).....)))))).....))))	0.960 -37.60

cbriggsae

chromosome:chrIV:1795140:1795251:-1

Same_strand|Intronic_non-coding|NM_064155|Y17G7B.3 ## Opposite_strand|Intronic_coding|NM_113688|AT3G27720 ## Opposite_strand|Boundary_coding|NM_070415|Y41E3.10 ## {Repeats: no}

block299 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.043	no	no	0.45/0.45	20/20/1.00	0.0	0.0	1	0	1	0	22	0	5arm	5	nd	0.30	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------CGCAAUU----------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------ACGCAATTTTTGAACGCCTC----------------------------------------------	20	1
cbriggsae	tcccctgaaacatgggtgacatACGCAATTTTTGAACGCCTCcaggaggcagaagacagaaattggaaagatcctgaaaaaatgggga
	****************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_026450
	--------------------------------------------------------------------------------------------------	NM_001093227
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_177350
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009930
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_058794
	--------------------------------------------------------------------------------------------------	NM_001024290
	--------------------------------------------------------------------------------------------------	NM_175692
	--------------------------------------------------------------------------------------------------	NM_001078787
	--------------------------------------------------------------------------------------------------	NM_001109774
	--------------------------------------------------------------------------------------------------	NM_001114303
	--------------------------------------------------------------------------------------------------	NM_001114304
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001089360
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_059581
	--------------------------------------------------------------------------------------------------	NM_121223
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_115574
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_021399
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079883
	>>................................................................................................	NM_001032415
cbriggsae	(((((........(((.........(((((((((...(((((...)))))......))))))))).......)))........)))))	0.780 -22.38

cbriggsae

chromosome:chrI:4054229:4054316:1

block1141 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.055	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	19	0	5arm	9	nd	0.33	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------CAGAAGA-----------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------TCAGAAGAGATTGTGTGATGG----------------------------------------------------	21	1
cbriggsae	atgcatactccctagagacTCAGAAGAGATTGTGTGATGGaaacccccgagatacctaggaattttctgagctctgaacggcctgtgttgca
	********************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_152394
cbriggsae	.(((((((..(((((((.(((((((((....((((..(((......)))..)))).......))))))))))))))...))...)))).)))	0.990 -26.90

cbriggsae

chromosome:chrII_random:605382:605473:-1

Same_strand|Intronic_coding|NM_152394|C3orf44 ## {Repeats: no}

block3544 [novel_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.071	no	no	0.30/0.30	20/20/1.00	0.0	0.0	1	0	1	0	29	-2	5arm_loop	5	nd	0.30	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------AAAGUUU---------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------GAAAGTTTGGTAAAAGAAAG---------------------------------------------------------	20	1
cbriggsae	aagaggaaaatagagtgattggtattcatGAAAGTTTGGTAAAAGAAAGcattttccttcagatttacagtgacttttctttcacgtcactgatattttctttttc
	**********************************************************************************************************
cbriggsae	((((((((((((.(((((((((.......(((((((..(((((.(((..........)))...)))))...)))))))...))).))))))..)))))))))))).	0.470 -22.40

cbriggsae

chromosome:chrUn:5244846:5244951:1

{Repeats: no}

block3607 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.324	no	no	0.46/0.46	26/26/0.00	0.0	0.0	1	0	1	0	4	25	5arm	1	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	-----UCAAUUG------------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----GTCAATTGAGCTATTGAAGACGGTGG------------------------------------------------------------------------------------------	26	1
cbriggsae	tgacGTCAATTGAGCTATTGAAGACGGTGGagcagctcggaatcgttaaaattggttttgcttcttcttcagaacgaacatttggaagttctccagcgattcgattcctaaatctttgtc
	************************************************************************************************************************
cbriggsae	.((((...(((.((..((((((..((.(((((.(((((.((((((((......((........)).......)))))...))).)).)))))))).)).))))))..)).)))...))))	0.470 -27.72

cbriggsae

chromosome:chrUn:6895449:6895568:1

{Repeats: no}

block2349 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.815	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	4	32	5arm	1	nd	0.50	4	1	1	na	na

		reads	miRBase family seed
seed	-----UCGCCAG----------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----TTCGCCAGAGTTCAACCAAC----------------------------------------------------------------------------------------	20	1
cbriggsae	ttatTTCGCCAGAGTTCAACCAACataaattcgaataaattctaatttccgtttcacccaatgattattctactttaaattttcgtttttattgatgagttcgaagaagtgg
	****************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071218
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083250
	--------------------------------------------------------------------------------------------------------------------------	NM_001085890
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070819
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_002710
cbriggsae	.((((((....((..(((..((..(((((..((((..................(((.....))).................))))..))))))).)))..))...)))))).	0.560 -13.15

cbriggsae

chromosome:chrIV:137424:137535:1

Same_strand|Intronic_coding|NM_071218|str-253 ## Same_strand|Intronic_non-coding|NM_001083250|rom-4 ## Opposite_strand|Intronic_non-coding|NM_001085890|MGC52856 ## {Repeats: no}

block2435 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.092	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	17	17	5arm	1	nd	0.37	4	1	1	na	na

		reads	miRBase family seed
seed	------------------UGGAUCC------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------TTGGATCCTCAGCAAAATG-------------------------------------------------------------------------	19	1
cbriggsae	tgaataacttcaaatgtTTGGATCCTCAGCAAAATGaatcttgaaaaatatcgagtatcgattcgagtatcaaaataatggcctagagaaccgaaaaatagtttttcag
	*************************************************************************************************************
	-----------------------------------------------------------------------------------------------------------------------	NM_070351
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090906
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182271
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001102902
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_113688
cbriggsae	((((.((((.......(((((.((((..((....(((..(((((.....((((.....)))))))))..)))........))..)).)).)))))....)))).)))).	0.940 -20.00

cbriggsae

chromosome:chrIV:2032546:2032654:1

Opposite_strand|Intronic_non-coding|NM_070351|LLC1.2 ## Same_strand|Intronic_non-coding|NM_001090906|EEF1D ## Same_strand|Intronic_coding|NM_182271|K02E7.4 ## {Repeats: no}

block2557 [novel_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.400	no	no	0.48/0.48	21/21/1.00	0.0	0.0	2	0	1	0	16	-1	5arm_loop	1	nd	0.29	2	2	1	na	na

		reads	miRBase family seed
seed	-----------------UUUCGCU--------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	----------------TTTTCGCTTGACGGTCTCAGT-------------------------------------------	21	2
cbriggsae	attttggatcgcttgtTTTTCGCTTGACGGTCTCAGTatacaacattttcagacatcaaaaatcggaaaaatctgaaatc
	********************************************************************************
cbriggsae	((((..(((......(((((((.((((..((((.((...........)).)))).))))....))))))))))..)))).	0.850 -11.10

cbriggsae

chromosome:chrIV:4095646:4095725:1

{Repeats: no}

block996 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.018	no	no	0.58/0.62	21/24/1.00	0.0	1.5	2	0	1	0	6	7	3arm	3	nd	0.08	1	2	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------GGGUUCG----------------------	2	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------------TGGGTTCGAACCCCACTCGTG---------	21	1
	------------------------------------------------------------TGGGTTCGAACCCCACTCGTGCTA------	24	1
cbriggsae	agcacgatggccgagtggttaaggcgttggacttaagttccaatggtggataacaccgcgTGGGTTCGAACCCCACTCGTGCTAtagctt
	******************************************************************************************
	----------------------------------------------------------------------------------------------------	NM_001047975
	----------------------------------------------------------------------------------------------------	NM_001047939
	----------------------------------------------------------------------------------------------------	NM_064155
	----------------------------------------------------------------------------------------------------	NM_101724
	----------------------------------------------------------------------------------------------------	NM_001055069
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090075
	----------------------------------------------------------------------------------------------------	NM_202130
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062737
cbriggsae	(((...((((((((((((....((..(((((((((.((......((((.....)))))).))))))))).))))))))).))))).))).	0.630 -33.90

cbriggsae

chromosome:chrII:9109117:9109206:1

Opposite_strand|Intronic_coding|NM_001047975|LOC683871 ## Opposite_strand|Intronic_non-coding|NM_064155|Y17G7B.3 ## Same_strand|Intronic_coding|NM_001090075|MGC69046 ## {Repeats: no}

block2209 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.051	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	8	14	5arm	1	nd	0.19	1	1	1	na	na

		reads	miRBase family seed
seed	---------UGGUGGA----------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------TTGGTGGATTTAGGTCAGGTT---------------------------------------------------------------------------	21	1
cbriggsae	ttgcttggTTGGTGGATTTAGGTCAGGTTtattcaaacgaatagaaaaaatatcgaaatatatcgtttgatcaacttttatcaaaaatttcactgttctagcaa
	********************************************************************************************************
	------------------------------------------------------------------------------------------------------------------	NM_057270
	------------------------------------------------------------------------------------------------------------------	NM_164773
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001082682
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001001344
cbriggsae	.((((.((..(((((((((.(((.(((((...(((((((((((...............))).))))))))..)))))..))).)))..))))))..)).)))).	0.980 -21.66

cbriggsae

chromosome:chrIV:9125090:9125193:-1

Opposite_strand|Intronic_coding|NM_057270|LanB1 ## Same_strand|Intronic_non-coding|NM_001082682|4F2LC-5 ## Same_strand|Intronic_coding|NM_001001344|ATP2B3 ## {Repeats: no}

block2206 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.521	no	no	0.54/0.54	26/26/0.00	0.0	0.0	1	0	1	0	2	0	3arm	1	nd	0.35	4	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------AUAUCCU--------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------GATATCCTCCTCCGATGGCCAGTAGT--	26	1
cbriggsae	ggcttttgccagaacttctatagtgggattccttcctcaatGATATCCTCCTCCGATGGCCAGTAGTcg
	*********************************************************************
	-------------------------------------------------------------------------------	NM_057270
	-------------------------------------------------------------------------------	NM_164773
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066961
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001001344
cbriggsae	((((...((((.....((...((..((((....((......)).))))..))..))))))....)))).	0.610 -13.30

cbriggsae

chromosome:chrIV:9044325:9044393:-1

Opposite_strand|Intronic_coding|NM_057270|LanB1 ## Same_strand|Intronic_non-coding|NM_066961|W09D10.4 ## Same_strand|Intronic_coding|NM_001001344|ATP2B3 ## {Repeats: no}

block72 [novel_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.569	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	4	0	3arm	49	nd	0.25	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------CGUUCGU----------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------GCGTTCGTGGTGTAATGGTC----	20	1
cbriggsae	gcgcccttgttttatacgcgaaccgctccctctcctctcgccGCGTTCGTGGTGTAATGGTCagca
	******************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_177366
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001069244
	----------------------------------------------------------------------------	NM_058481
	----------------------------------------------------------------------------	NM_014920
	----------------------------------------------------------------------------	NM_058496
	----------------------------------------------------------------------------	NM_016513
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_059707
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010301
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008139
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_059728
cbriggsae	((..((.....(((((((((((.(((................))))))))).))))).))...)).	0.700 -15.09

cbriggsae

chromosome:chrI:2304871:2304936:-1

Same_strand|Intronic_non-coding|NM_177366|Gpr157 ## Opposite_strand|Intronic_non-coding|NM_058481|ubc-3 ## Opposite_strand|Intronic_coding|NM_058496|Y71G12B.5 ## Same_strand|Intronic_coding|NM_059728|F26A3.1 ## {Repeats: no}

block1738 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.663	no	no	0.44/0.44	18/18/0.00	0.0	0.0	1	0	1	0	24	3	5arm	1	nd	0.50	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------AAUCGAG------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------GAATCGAGAGCTGTGAAT--------------------------------------------------------	18	1
cbriggsae	ccaaatcgctccgaatatcttcacGAATCGAGAGCTGTGAATggtgataaatttaagaatagccaagatgtgtcgagtattttttacgattagttggc
	**************************************************************************************************
	------------------------------------------------------------------------------------------------------------	NM_021863
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_005249
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068288
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_059518
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067241
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001021511
cbriggsae	((((((((....(((((.(((.(((.(((....(((((....(((.....))).....)))))...))).))).))))))))....)))))...))).	0.630 -17.00

cbriggsae

chromosome:chrIII:7854638:7854735:1

Opposite_strand|Intronic_non-coding|NM_021863|Hspa2 ## Same_strand|Intronic_coding|NM_005249|FOXG1 ## Same_strand|Intronic_non-coding|NM_067241|epc-1 ## {Repeats: no}

block976 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.553	no	no	0.22/0.22	18/18/0.00	0.0	0.0	1	0	1	0	26	-3	3arm_loop	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------CAACGAA------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------TCAACGAAACAATTAAAA--------------------------	18	1
cbriggsae	aactttgttctgcttttgtagatacttttgtagttatttttgtagttaTCAACGAAACAATTAAAAaaagaccggtgtctaaagatgaggtt
	********************************************************************************************
	------------------------------------------------------------------------------------------------------	NM_177732
	------------------------------------------------------------------------------------------------------	NM_214509
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_001030843
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001101718
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001056446
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	------------------------------------------------------------------------------------------------------	NM_207243
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064082
cbriggsae	(((((((.(((.......(((((((((((.(((((..((((((........)))))).)))))...)))....)))))))).))))))))))	0.620 -13.80

cbriggsae

chromosome:chrII:7602362:7602453:1

Opposite_strand|Intronic_non-coding|NM_177732|Slc35d1 ## Opposite_strand|Intronic_coding|NM_214509|COLP1alpha ## Same_strand|Intronic_coding|NM_001101718|LOC100009540 ## Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## {Repeats: no}

block4371 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.351	no	no	0.71/0.71	21/21/1.00	0.0	0.0	1	0	1	0	6	1	5arm	6	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	-------GCUAUCC-----------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------GGCTATCCGCGACAGCCAGCC----------------------------------------	21	1
cbriggsae	taccctGGCTATCCGCGACAGCCAGCCggcccataaacgggggaaaacgacgacgatgatatagggt
	*******************************************************************
	-----------------------------------------------------------------------------	NM_007496
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_079847
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_170474
	-----------------------------------------------------------------------------	NM_181874
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001040230
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_132027
	-----------------------------------------------------------------------------	NM_000844
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122952
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122953
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010905
cbriggsae	.((((((..((((((((....((..(((.........))).))....)).))..))))...))))))	0.620 -18.10

cbriggsae

chromosome:chrX:3416783:3416849:-1

Opposite_strand|Intronic_non-coding|NM_007496|Zfhx3 ## Same_strand|Intronic_coding|NM_079847|Mlc2 ## Opposite_strand|Intronic_coding|NM_181874|GRM7 ## Same_strand|Intronic_non-coding|NM_001040230|Ache ## {Repeats: no}

block2086 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.101	no	no	0.24/0.24	21/21/1.00	0.0	0.0	1	0	1	0	2	30	3arm	1	nd	0.14	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------------------AAUUUUA---------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------------------------TAATTTTATTGGCTCTATATG--	21	1
cbriggsae	ttgtgagggctaatggcattttatacgacttttctgcgataattttttctttttcaacaatgtctgaaatgtaacgaaaaaaatcgcttcgcgaTAATTTTATTGGCTCTATATGac
	*********************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_069166
cbriggsae	((((((((((((((((....((((.((........(((((..(((((((..(((((........)))))......))))))))))))....))))))..))))))))))).))))).	0.900 -23.60

cbriggsae

chromosome:chrIV:4113332:4113448:-1

Same_strand|Intronic_coding|NM_069166|acc-2 ## {Repeats: no}

block1458 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.734	no	no	0.52/0.52	21/21/1.00	0.0	0.0	2	0	1	0	29	-4	3arm_loop	8	nd	0.52	4	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------UCCGAUC------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	--------------------------------------------GTCCGATCTGGCAAGTTAAGC-----------------------------	21	2
cbriggsae	gatgtgatgcttacgaccatatcacgttgaatgcacgccatcccGTCCGATCTGGCAAGTTAAGCaacgttgagtccagttagtacttggatcg
	**********************************************************************************************
	--------------------------------------------------------------------------------------------------------	NM_001092591
	--------------------------------------------------------------------------------------------------------	NM_177186
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001030661
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027534
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027535
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066897
cbriggsae	(((.(((((((.(((((((....((((((...((..((((((......))..))))..))....)))))))).)))..)).)))).))).))).	0.500 -20.70

cbriggsae

chromosome:chrIII:8638808:8638901:-1

Opposite_strand|Intronic_non-coding|NM_001092591|MGC81879 ## Same_strand|Intronic_non-coding|NM_001030661|SETD1B ## {Repeats: no}

block594 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.304	no	no	0.58/0.58	19/19/0.00	0.0	0.0	1	0	1	0	26	14	3arm	1	nd	0.32	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------CUUCGAU-------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------------GCTTCGATGATGGCTCTGG--------------------------	19	1
cbriggsae	tcaagttaccgaggtgttcgccggccttttcgaagagactcgtgatgaggtcgtcctcggcgaaacgtGCTTCGATGATGGCTCTGGctgaaaagaaattccagtgaaattga
	*****************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075282
	---------------------------------------------------------------------------------------------------------------------------	NM_011794
cbriggsae	((((.((((.(((...((((((((((...((((((..((((((..(((((....)))))))))...)).))))))....))))..))).)))......)))..))))..))))	0.840 -31.70

cbriggsae

chromosome:chrII:2350811:2350923:-1

Same_strand|Intronic_non-coding|NM_075282|wrs-1 ## Opposite_strand|Intronic_non-coding|NM_011794|Bpnt1 ## {Repeats: no}

block4807 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.149	no	no	0.62/0.62	21/21/1.00	0.0	0.0	2	0	1	0	11	25	3arm	1	nd	0.24	2	2	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------CAUUUCG------------------------	2	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------------------GCATTTCGACAGGCGGTCTCG-----------	21	2
cbriggsae	tcaagttgtgagactgcttcttcctgagcattctttgggccacttccgctattcagcggggactggaacactcggacggGCATTTCGACAGGCGGTCTCGagaagatttgg
	***************************************************************************************************************
	-------------------------------------------------------------------------------------------------------------------------	NM_001089360
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007473
	-------------------------------------------------------------------------------------------------------------------------	NM_007496
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	-------------------------------------------------------------------------------------------------------------------------	NM_001084210
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134696
	-------------------------------------------------------------------------------------------------------------------------	NM_103590
cbriggsae	.((((((.(((((((((((..((..((((..(((.((..(((.(((((((....)))))))..)))..))...)))...)).))..)).)))))))))))....)))))).	0.430 -37.70

cbriggsae

chromosome:chrX:1329867:1329977:1

Opposite_strand|Intronic_coding|NM_001089360|zgc:162345 ## Same_strand|Intronic_non-coding|NM_007473|Aqp7 ## Opposite_strand|Intronic_non-coding|NM_007496|Zfhx3 ## Same_strand|Intronic_coding|NM_134696|CG2839 ## {Repeats: no}

block1176 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.450	no	no	0.41/0.41	22/22/1.00	0.0	0.0	2	0	1	0	11	10	5arm	2	nd	0.41	3	2	1	na	na

		reads	miRBase family seed
seed	------------AAUGGAU----------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	-----------GAATGGATGAGGTTCTGGATAT--------------------------------------------------------------	22	2
cbriggsae	ttttttcttttGAATGGATGAGGTTCTGGATATtgatggcgtgatgaagcgggtaaattctccgatctattccaacgttcggaaaaagggaggag
	***********************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001085229
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062047
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062035
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066275
cbriggsae	((((..(((((...((((((.((...(((((...((..((.((......)).))....))....)))))..))..))))))..)))))..)))).	0.760 -20.60

cbriggsae

chromosome:chrII_random:1800642:1800736:-1

Same_strand|Intronic_non-coding|NM_001085229|ATDCI1 ## Same_strand|Intronic_coding|NM_062035|lin-8 ## {Repeats: no}

block2625 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.071	no	no	0.22/0.22	18/18/0.00	0.0	0.0	2	0	1	0	1	13	5arm	1	nd	0.39	4	2	1	na	na

		reads	miRBase family seed
seed	--UUUAUAU--------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	-TTTTATATACAACAGTTC----------------------------------------------	18	2
cbriggsae	gTTTTATATACAACAGTTCaaacaatggtttaataattaggaattgttttgggctgatagaagca
	*****************************************************************
	---------------------------------------------------------------------------	NM_001094577
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134696
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_026485
	---------------------------------------------------------------------------	NM_001083551
cbriggsae	(((((.(((....(((..((((((((..((((.....)))).)))))).))..))))))))))).	0.970 -12.40

cbriggsae

chromosome:chrIV:7077176:7077240:1

Opposite_strand|Intronic_non-coding|NM_001094577|LOC494739 ## Same_strand|Intronic_coding|NM_134696|CG2839 ## Same_strand|Intronic_non-coding|NM_026485|Trabd ## {Repeats: no}

block3272 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.065	no	no	0.58/0.60	19/20/0.50	0.0	0.5	2	0	1	0	27	6	3arm	1	nd	0.42	4	2	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------AGCCGUC---------------------------------------	2	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------AAGCCGTCAACTCCAGGAG----------------------------	19	1
	-------------------------------------------------------------AAGCCGTCAACTCCAGGAGC---------------------------	20	1
cbriggsae	attatacaggcgggtgagtgattccccttctgggtcaaaccaactgaggtggtaacatcgcAAGCCGTCAACTCCAGGAGCtgtatcgctttgcatccatctgcataa
	************************************************************************************************************
cbriggsae	.((((.(((..(((((((((((....(((((((((...((....((.((((....)))).))....))..)).)))))))....))))))...)))))..))).))))	0.860 -32.20

cbriggsae

chromosome:chrUn:5192507:5192614:-1

{Repeats: no}

block277 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.033	no	no	0.52/0.52	21/21/1.00	0.0	0.0	2	0	1	0	5	20	3arm	2	nd	0.19	2	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------AUGGAAG------------------	2	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------GATGGAAGCTGGTCGTCAGAT-----	21	2
cbriggsae	gacggtcttgggcgaccgtctcctgttgggacgaatgtaacaatgaaagatggaatGATGGAAGCTGGTCGTCAGATcgttg
	**********************************************************************************
	--------------------------------------------------------------------------------------------	NM_174569
	--------------------------------------------------------------------------------------------	NM_002035
	--------------------------------------------------------------------------------------------	NM_177366
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001107428
	--------------------------------------------------------------------------------------------	NM_053878
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008665
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067597
cbriggsae	((((((((..(((((((((.(((.((((..((....))..))))...............))).)).))))))))))))))).	0.790 -26.59

cbriggsae

chromosome:chrI:2029231:2029312:1

block4725 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.997	no	no	0.54/0.54	26/26/0.00	0.0	0.0	1	0	1	0	30	1	3arm	2	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------UGCCUUG------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------GTGCCTTGAGCAATGCCTTGGTGTCT------------------------------	26	1
cbriggsae	tacgaaattatgttaccccttggaaccagatctgtgcggctcggaaaacagaatatatccatGTGCCTTGAGCAATGCCTTGGTGTCTcttctgaatacttgaacatcttcctccgtg
	**********************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------------	NM_203923
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001111199
	--------------------------------------------------------------------------------------------------------------------------------	NM_001030661
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003666
cbriggsae	((((.....(((((.....((((((..(((((((.((.((((((...(((...........)))...))))))...))..))).)))).)))))).......))))).......))))	0.450 -16.80

cbriggsae

chromosome:chrX:18773014:18773131:-1

Opposite_strand|Intronic_non-coding|NM_203923|abcb4 ## Same_strand|Intronic_non-coding|NM_001111199|zgc:173710 ## Same_strand|Intronic_coding|NM_001003666|Zfp457 ## {Repeats: no}

block1720 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.260	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	9	-4	3arm_loop	1	nd	0.48	4	1	1	na	na

		reads	miRBase family seed
seed	------------------------------GACUUCA----------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------AGACTTCATATGGTGTTTACC---------	21	1
cbriggsae	catggaagaactaaacataaatttggaacAGACTTCATATGGTGTTTACCcctgatatg
	***********************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087791
	---------------------------------------------------------------------	NM_001047975
	---------------------------------------------------------------------	NM_001858
	---------------------------------------------------------------------	NM_213264
	---------------------------------------------------------------------	NM_131292
	---------------------------------------------------------------------	NM_080680
	---------------------------------------------------------------------	NM_001845
	---------------------------------------------------------------------	NM_007739
	---------------------------------------------------------------------	NM_181277
	---------------------------------------------------------------------	NM_001006951
	---------------------------------------------------------------------	NM_001081764
	---------------------------------------------------------------------	NM_001046199
	---------------------------------------------------------------------	NM_001005153
	---------------------------------------------------------------------	NM_001002980
	---------------------------------------------------------------------	NM_001014971
	---------------------------------------------------------------------	NM_204790
	---------------------------------------------------------------------	NM_001082666
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_079524
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_206442
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_206443
	---------------------------------------------------------------------	NM_001038742
	---------------------------------------------------------------------	NM_080338
	---------------------------------------------------------------------	NM_167026
	---------------------------------------------------------------------	NM_167027
	---------------------------------------------------------------------	NM_212528
	---------------------------------------------------------------------	NM_201478
	---------------------------------------------------------------------	NM_182968
	---------------------------------------------------------------------	NM_033150
	---------------------------------------------------------------------	NM_080629
	---------------------------------------------------------------------	NM_000089
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_005381
	---------------------------------------------------------------------	NM_001107100
	---------------------------------------------------------------------	NM_000393
	---------------------------------------------------------------------	NM_080681
	---------------------------------------------------------------------	NM_004845
	---------------------------------------------------------------------	NM_080680
	---------------------------------------------------------------------	NM_001844
	---------------------------------------------------------------------	NM_080679
	---------------------------------------------------------------------	NM_001854
	---------------------------------------------------------------------	NM_212579
	---------------------------------------------------------------------	NM_080630
	---------------------------------------------------------------------	NM_007736
	---------------------------------------------------------------------	NM_001083844
	---------------------------------------------------------------------	NM_007738
	---------------------------------------------------------------------	NM_031366
	---------------------------------------------------------------------	NM_199214
	---------------------------------------------------------------------	NM_009926
	---------------------------------------------------------------------	NM_031362
	---------------------------------------------------------------------	NM_031365
	---------------------------------------------------------------------	NM_134452
	---------------------------------------------------------------------	NM_000092
	---------------------------------------------------------------------	NM_000091
	---------------------------------------------------------------------	NM_078485
	---------------------------------------------------------------------	NM_001851
	---------------------------------------------------------------------	NM_001079992
	---------------------------------------------------------------------	NM_001130548
cbriggsae	((((..((...(((((((.....((((......))))....)))))))...))..))))	1.000 -9.40

cbriggsae

chromosome:chrIII:6844135:6844193:1

Same_strand|Intronic_coding|NM_001087791|col2a1b ## Opposite_strand|Intronic_coding|NM_001047975|LOC683871 ## Opposite_strand|Intronic_non-coding|NM_213264|col9a1 ## {Repeats: no}

block182 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.764	no	no	0.48/0.48	23/23/1.00	0.0	0.0	1	0	1	0	23	2	5arm	1	nd	0.30	4	1	1	na	na

		reads	miRBase family seed
seed	------------------------UCUCUCG--------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------TTCTCTCGCTCCTGGTTATCTTC-----------------------------------------------	23	1
cbriggsae	ccgttcgactgctctcatcgtcaTTCTCTCGCTCCTGGTTATCTTCgtcaccaatacgctggctcagactgagaagaatggaacagattcgga
	*********************************************************************************************
	-------------------------------------------------------------------------------------------------------	NM_199320
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061648
	-------------------------------------------------------------------------------------------------------	NM_060440
cbriggsae	(((.....(((.((.......((((((((((.((..(((((....(((.......))).)))))..)).))))).))))))).)))...))).	0.730 -18.11

cbriggsae

chromosome:chrI:8986506:8986598:-1

Opposite_strand|Intronic_non-coding|NM_199320|PHF17 ## Same_strand|Intronic_coding|NM_061648|sdz-18 ## Opposite_strand|Intronic_coding|NM_060440|srt-62 ## {Repeats: no}

block2352 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.307	no	no	0.45/0.45	20/20/1.00	0.0	0.0	1	0	1	0	1	38	3arm	1	nd	0.35	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------------------UCGAUAC-------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------------------------------------TTCGATACGAGTACTACCAG-	20	1
cbriggsae	ttttggggaattgcagaaattgaatcaggggaataagctagtaaaattattcggtttcagatacacgttttatgaagtaaagtattatttttctcgaTTCGATACGAGTACTACCAGa
	**********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071218
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067556
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083250
	--------------------------------------------------------------------------------------------------------------------------------	NM_001085890
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070819
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_002710
cbriggsae	.(((((.....(((....((((((((((..(((((((((.(((((((...((.......)).....)))))))..)))......))))))..)).))))))))....)))...)))))	0.900 -22.80

cbriggsae

chromosome:chrIV:161609:161726:1

Same_strand|Intronic_coding|NM_071218|str-253 ## Same_strand|Intronic_non-coding|NM_001083250|rom-4 ## Opposite_strand|Intronic_non-coding|NM_001085890|MGC52856 ## {Repeats: no}

block4852 [novel_lenNOK_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.354	no	no	0.40/0.40	25/25/0.00	0.0	0.0	2	0	1	0	12	-1	5arm_loop	1	nd	0.28	3	2	1	na	na

		reads	miRBase family seed
seed	-------------UUUCCCG--------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	------------GTTTCCCGTGATTTTGAACTTGTGT---------------------------------------------------	25	2
cbriggsae	caattcgtccatGTTTCCCGTGATTTTGAACTTGTGTacgcacagctttccaaataaaaaaatctcggagccgctaatttcaaattga
	****************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087279
	--------------------------------------------------------------------------------------------------	NM_166414
	--------------------------------------------------------------------------------------------------	NM_001046332
cbriggsae	(((((.......((...(((.(((((((((.(((((....))))).))).........)))))).)))....))........))))).	0.830 -12.26

cbriggsae

chromosome:chrX:4767264:4767351:1

Same_strand|Intronic_non-coding|NM_001087279|fbxl5 ## Opposite_strand|Intronic_non-coding|NM_166414|Act57B ## {Repeats: no}

block3458 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.564	no	no	0.50/0.50	26/26/0.00	0.0	0.0	1	0	1	0	1	24	5arm	4	nd	0.31	3	1	1	na	na

		reads	miRBase family seed
seed	--UCUCGAA-----------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-GTCTCGAACATTGCCCACGATAGAAG-----------------------------------------------------------------------------------------	26	1
cbriggsae	cGTCTCGAACATTGCCCACGATAGAAGaaatgggctgccgacgcttctttaactgcctgaggaacagctccgttgtcagcctcgtttttgttttaaagtttcaaacgatcggtgat
	********************************************************************************************************************
cbriggsae	.(((((((...(((...((..((((((((((((((((.(((((((((((((......))))))..)))...)))).))))).))))))..)))))..))..)))....)))).)))	0.460 -27.40

cbriggsae

chromosome:chrUn:3803404:3803519:1

{Repeats: no}

block53 [novel_Multihit_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.250	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	25	-3	3arm_loop	47	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------UAAUGGU--------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------GTAATGGTCAGCATGGATGCC-------------------------	21	1
cbriggsae	acgtcttcttattgtctttagaatgttctagaagaagttctatgcgttcgtggtGTAATGGTCAGCATGGATGCCttccaagcattcgacgggggttcga
	****************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_057259
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008855
	--------------------------------------------------------------------------------------------------------------	NM_061553
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068079
cbriggsae	.((.(((((....(((....(((((((...((((....(((((((..((((......))))...)))))))...))))..)))))))))))))))..)).	0.780 -26.40

cbriggsae

chromosome:chrI:1630218:1630317:-1

Same_strand|Intronic_non-coding|NM_057259|l(2)37Cc ## Opposite_strand|Intronic_non-coding|NM_061553|C13A10.1 ## {Repeats: no}

block4060 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.357	no	no	0.45/0.45	22/22/1.00	0.0	0.0	1	0	1	0	26	7	3arm	1	nd	0.41	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------CUCAGUA----------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------GCTCAGTAAGGTATTGGTTCTC--------------------------	22	1
cbriggsae	tcgacggtttccttcaagcggtcattttcagcctgaagacttgtcttatgcatttctaggttgctcagatGCTCAGTAAGGTATTGGTTCTCggttttggcggttcgaagcttgtcgg
	**********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007734
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122952
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122953
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010905
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000092
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_078262
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009930
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031365
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000091
	--------------------------------------------------------------------------------------------------------------------------------	NM_000945
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_053304
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031362
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199214
	--------------------------------------------------------------------------------------------------------------------------------	NM_177732
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_204790
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001081764
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087789
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087791
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_203889
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083388
	--------------------------------------------------------------------------------------------------------------------------------	NM_001094292
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_012929
	--------------------------------------------------------------------------------------------------------------------------------	NM_153093
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001085355
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-------------------------------------------------------------------------------------	NM_069472
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<----------------------------------------------------------------------------------	NM_063253
cbriggsae	.((((((....((((.(((.((((.....((((.((..(((..((((((((((((..((....)).))))))...))))))....)))..)))))).)))).))).)))).)))))).	0.800 -30.90

cbriggsae

chromosome:chrV:6939404:6939521:1

Same_strand|Intronic_coding|NM_007734|Col4a3 ## Same_strand|Intronic_non-coding|NM_001122952|Nfia ## Opposite_strand|Intronic_non-coding|NM_000945|PPP3R1 ## Opposite_strand|Intronic_coding|NM_069472|F01G10.5 ## {Repeats: no}

block2850 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.075	no	no	0.50/0.50	26/26/0.00	0.0	0.0	1	0	1	0	12	2	3arm	1	nd	0.31	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------UUCAGCU------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------GTTCAGCTCGTCCTCTAACTTCATCC------------	26	1
cbriggsae	tagttcaataatgaagttggcgagatttgaaaaccaagaagacatcGTTCAGCTCGTCCTCTAACTTCATCCattattgtctct
	************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_079659
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_206502
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_169746
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_169747
	----------------------------------------------------------------------------------------------	NM_001095500
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065289
	----------------------------------------------------------------------------------------------	NM_001024205
	----------------------------------------------------------------------------------------------	NM_001077467
	----------------------------------------------------------------------------------------------	NM_001078490
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067803
cbriggsae	.((..(((((((((((((((((((...((((......((.....)).)))).))))))....))))))))....)))))...))	0.920 -17.20

cbriggsae

chromosome:chrIV:14737840:14737923:1

Same_strand|Intronic_non-coding|NM_079659|cher ## Opposite_strand|Intronic_coding|NM_001095500|LOC496349 ## Opposite_strand|Intronic_non-coding|NM_001024205|Nufip2 ## Same_strand|Intronic_coding|NM_067803|cdh-10 ## {Repeats: no}

block2748 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.092	no	no	0.25/0.25	20/20/1.00	0.0	0.0	1	0	1	0	12	6	3arm	1	nd	0.40	5	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------UAUUAAG------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------------------ATATTAAGCCAATTAGATGA------------	20	1
cbriggsae	gataatcagttgattgattaattaatcgtttgagggataaaacgaATATTAAGCCAATTAGATGAgacctgcttgtc
	*****************************************************************************
	---------------------------------------------------------------------------------------	NM_116712
	---------------------------------------------------------------------------------------	NM_053103
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_133195
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_129811
	---------------------------------------------------------------------------------------	NM_001087925
	---------------------------------------------------------------------------------------	NM_001090594
	---------------------------------------------------------------------------------------	NM_001082840
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_147305
	---------------------------------------------------------------------------------------	NM_002073
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_201943
	.......................................................................<<<<<<<<<<<<<<<<	NM_001124655
cbriggsae	(((((.((((((((((.(((((...((((((........))))))..)))))..))))))).......))).)))))	0.840 -15.11

cbriggsae

chromosome:chrIV:12107574:12107650:1

Opposite_strand|Intronic_coding|NM_116712|CPK23 ## Opposite_strand|Intronic_non-coding|NM_053103|Entpd7 ## Same_strand|Intronic_non-coding|NM_133195|Brunol4 ## Same_strand|Intronic_coding|NM_147305|AT2G12875 ## {Repeats: no}

block328 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.484	no	no	0.43/0.43	21/21/1.00	0.0	0.0	2	0	1	0	10	2	5arm	1	nd	0.29	2	2	1	na	na

		reads	miRBase family seed
seed	-----------GCAGGUA--------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	----------AGCAGGTAAGGTTTTCTTGGT-------------------------------------------------	21	2
cbriggsae	cataggatttAGCAGGTAAGGTTTTCTTGGTcctccttttttggtacccagtttagcttgggcaggtgtcaaatcaatga
	********************************************************************************
	--------------------------------------------------------------------<<<<<<<<<<<<<<<<<<<<<<	NM_060373
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_013927
cbriggsae	(((..(((((..((.((.(((((..((.(((((.........)).))).))...)))))..))...))..))))).))).	0.950 -16.80

cbriggsae

chromosome:chrI:5898591:5898670:1

Opposite_strand|Intronic_coding|NM_060373|pash-1 ## Same_strand|Intronic_non-coding|NM_013927|Cngb3 ## {Repeats: no}

block5018 [novel_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.187	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	8	2	3arm	49	nd	0.35	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------CGUUCGU--------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------GCGTTCGTGGTGTAATGGTC--------	20	1
cbriggsae	ttcatataatattatacaggagagtgttagaatgtgcGCGTTCGTGGTGTAATGGTCagcatgga
	*****************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001108848
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_133381
	---------------------------------------------------------------------------	NM_001045626
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_004845
	---------------------------------------------------------------------------	NM_001086847
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001065160
	---------------------------------------------------------------------------	NM_001082087
	---------------------------------------------------------------------------	NM_001017762
cbriggsae	(((((....(((((((((.(((.((((........)))).))).)).)))))))......)))))	0.990 -13.40

cbriggsae

chromosome:chrX:13287567:13287631:1

Same_strand|Intronic_non-coding|NM_001108848|Elavl1 ## Opposite_strand|Intronic_coding|NM_001045626|galntl1 ## Opposite_strand|Intronic_non-coding|NM_001086847|MGC53595 ## Same_strand|Intronic_coding|NM_001065160|Os06g0725900 ## {Repeats: no}

block2404 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.373	no	no	0.32/0.32	19/19/0.00	0.0	0.0	1	0	1	0	17	0	3arm	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------UUAGUAC----------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------TTTAGTACAAATCAGTGAG-----------------	19	1
cbriggsae	ggtttcaggattttcataaattttcgaaatttctagaaatatgcTTTAGTACAAATCAGTGAGaatggtgaaaaaaacta
	********************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047559
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067544
	------------------------------------------------------------------------------------------	NM_064155
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075433
	------------------------------------------------------------------------------------------	NM_075433
cbriggsae	(((((.....(((((((..(((((((..(((((((((.......)))))...))))...))))))).)))))))))))).	0.460 -10.90

cbriggsae

chromosome:chrIV:1462352:1462431:1

Same_strand|Intronic_non-coding|NM_001047559|Y41E3.1 ## Same_strand|Intronic_coding|NM_067544|F09C11.1 ## Opposite_strand|Intronic_non-coding|NM_064155|Y17G7B.3 ## Opposite_strand|Intronic_coding|NM_075433|srt-45 ## {Repeats: no}

block2970 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.270	no	no	0.37/0.37	19/19/0.00	0.0	0.0	1	0	1	0	8	27	5arm	2	nd	0.42	3	1	1	na	na

		reads	miRBase family seed
seed	---------AAAUACU-------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------AAAATACTGTTGCTCGACT--------------------------------------------------------------------------------------	19	1
cbriggsae	tactgcttAAAATACTGTTGCTCGACTctcttggtgaattcaatgagattcgtgtattttttcagaatattcgtgatatttgtcagcggaagacggacggtgatcagcgtgta
	*****************************************************************************************************************
cbriggsae	(((((((.....(((((((..((...(((.((((..(((...(((((((((.((........)))))).)))))...)))..)))).))).))..)))))))...)))).)))	0.590 -25.30

cbriggsae

chromosome:chrUn:395779:395891:-1

{Repeats: no}

block2181 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.314	no	no	0.45/0.45	20/20/1.00	0.0	0.0	3	0	1	0	34	2	3arm	1	nd	0.45	4	3	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------UGACUGU----------------------------------------------	3	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------TTGACTGTCTATGCCTCTTG----------------------------------	20	3
cbriggsae	acatttaaaattttacagtttaaaaaatgtctcataatttgcaaatcattcaattttctaaTTGACTGTCTATGCCTCTTGatcccaattctttaaaaaattcaaaacaatatgt
	*******************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027775
	-----------------------------------------------------------------------------------------------------------------------------	NM_001111827
	-----------------------------------------------------------------------------------------------------------------------------	NM_001027894
	-----------------------------------------------------------------------------------------------------------------------------	NM_068459
cbriggsae	((((..............((((((.(((...(((......(((...((.((((((....)))))).))....)))....))).....))).))))))..............))))	0.650 -10.09

cbriggsae

chromosome:chrIV:8331228:8331342:-1

Same_strand|Intronic_coding|NM_001027775|Y75B8A.37 ## Opposite_strand|Intronic_non-coding|NM_001111827|LOC542215 ## Opposite_strand|Intronic_coding|NM_001027894|nhr-46 ## {Repeats: no}

block2930 [novel_lenNOK_multiarm_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.757	no	no	0.27/0.33	18/26/0.25	0.0 0.0	0.0 1.3	1 3	0 0	1 1	0 0	45 14	-24 8	5arm_loop_3arm 3arm	3 3	nd nd	0.46 0.39	4 2	4	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------UAUUGAG----------------------------	3	novel
seed	----------------------------------------------AUAAUUU------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------------TTATTGAGTTCCAGTATG------------------	18	2
	---------------------------------------------AATAATTTGTGCTTTTATTGAGTTCC------------------------	26	1
	-----------------------------------------------------------TTATTGAGTTCCAGTATGAATG--------------	22	1
cbriggsae	tgatatttaaatggcagtcttagcgtgaggacattaaggtagcaaAATAATTTGTGCTTTTATTGAGTTCCAGTATGAATGaagttattggttag
	***********************************************************************************************
cbriggsae	((((.....((((((..((....((((.(((..((((...((((.((....)).))))....))))..)))..))))...)).)))))).)))).	0.530 -14.00

cbriggsae

chromosome:chrM:2945:3039:-1

{Repeats: no}

block3357 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.356	no	no	0.33/0.35	18/20/0.50	0.0	1.0	2	0	1	0	5	8	3arm	1	nd	0.35	3	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------UAACAGC-----------------	2	novel
		len	cloning frequencies
			AF16
	--------------------------------------------TTAACAGCGTAAATGTAGAG-----	20	1
	--------------------------------------------TTAACAGCGTAAATGTAG-------	18	1
cbriggsae	tctttcatgatatccatatgttaagaaacaagtatattttttaaTTAACAGCGTAAATGTAGAGaaaga
	*********************************************************************
cbriggsae	((((((...((((..((.((((((..((.(((....))).))..))))))..))..))))...))))))	0.880 -8.40

cbriggsae

chromosome:chrUn:362827:362895:1

{Repeats: no}

block3463 [novel_lenNOK_Multihit_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.238	no	no	0.62/0.62	26/26/0.00	0.0	0.0	2	0	1	0	6	-3	3arm_loop	12	nd	0.23	2	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------------GUGGGAC------------------------	2	novel
		len	cloning frequencies
			AF16
	--------------------------------------GGTGGGACGGATTGAGCCATGGCGAT------	26	2
cbriggsae	agacgatcttggcgtttggttgggtttggatgtctcctGGTGGGACGGATTGAGCCATGGCGATggtttg
	**********************************************************************
cbriggsae	((((.(((...((...(((((.((((....((((.((....)))))))))).)))))..))))).)))).	0.680 -19.40

cbriggsae

chromosome:chrUn:3903782:3903851:1

{Repeats: no}

block158 [novel_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.019	no	no	0.29/0.29	21/21/1.00	0.0	0.0	1	0	1	0	19	15	3arm	12	nd	0.43	5	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AUAUGAU--------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------TATATGATTTTTGGAACCTAG-------------------	21	1
cbriggsae	tagctaagatcaaagtgtagtatctgttcttatcgtattaacctacggtatacactcgaatgagtgtaataaaggtTATATGATTTTTGGAACCTAGgaaagactcggggcttgct
	********************************************************************************************************************
	------------------------------------------------------------------------------------------------------------------------------	NM_008855
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_176035
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205985
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205986
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_102365
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001084127
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001009899
	------------------------------------------------------------------------------------------------------------------------------	NM_020810
cbriggsae	.(((.(((.((..(((.........(((((.((((((.((((((...((.(((((((....)))))))))..))))))))))))....))))).........)))..)).))))))	0.900 -29.47

cbriggsae

chromosome:chrI:8194904:8195019:-1

Opposite_strand|Intronic_non-coding|NM_008855|Prkcb1 ## Same_strand|Intronic_coding|NM_176035|nAcRalpha-34E ## Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## {Repeats: no}

block4818 [novel_lenNOK_mirtron_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.010	no	no	0.33/0.35	18/20/0.50	0.5	0.5	2	0	1	0	14	7	3arm	1	2	0.06	1	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------GGAAAUG--------------------------	1	novel
seed	------------------------------------------------------------GAAAUGG-------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------TGGAAATGGAGAAATCTTAC--------------	20	1
	-----------------------------------------------------------GGAAATGGAGAAATCTTA---------------	18	1
cbriggsae	cgccgatgatgcaaaggtaagattccttcatttcatccaaaaagttggttgaattattTGGAAATGGAGAAATCTTACaggcccagacagcg
	********************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047939
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001013793
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_204234
	------------------------------------------------------------------------------------------------------	NM_178014
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008855
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008212
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_005327
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011073
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001046334
	>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001046949
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001051050
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087431
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214331
	------------------------------------------------------------------------------------------------------	NM_001005605
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_057186
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003515
	>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>	NM_077183
cbriggsae	(((...((..((....((((((((.(((((((...((((((.((((.....)))).))))))))))))).))))))))..)).))....)))	0.980 -26.50

cbriggsae

chromosome:chrX:2023869:2023960:1

Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_coding|NM_001047939|LOC499407 ## Opposite_strand|Intronic_non-coding|NM_178014|TUBB ## {Repeats: no}

block4890 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.357	no	no	0.32/0.32	19/19/0.00	0.0	0.0	1	0	1	0	22	13	5arm	2	nd	0.37	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------CUAUGGA----------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------ACTATGGAAATAAAGAGCT-----------------------------------------------------------------------------	19	1
cbriggsae	tggtcaaaatttatgatgatggACTATGGAAATAAAGAGCTtatcgagaaaacaaattggtctgcgaataaggttagtcatgtttttgttttttcattatataattaattttcagatc
	**********************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------------	NM_153821
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_125756
	--------------------------------------------------------------------------------------------------------------------------------	NM_204793
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_079593
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_169386
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_176459
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001016575
	--------------------------------------------------------------------------------------------------------------------------------	NM_001085944
cbriggsae	.((((((((((.((.((((((((..((..(((((..((.((((((((((...((...)).))).))).)))).)).....)))))..))...))))))))...)).))))))..))))	0.650 -19.10

cbriggsae

chromosome:chrX:6620951:6621068:1

Opposite_strand|Intronic_non-coding|NM_153821|Prrx1 ## Same_strand|Intronic_coding|NM_125756|HEN3 ## Same_strand|Intronic_non-coding|NM_079593|pros ## {Repeats: no}

block4729 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.062	no	no	0.44/0.44	18/18/0.00	0.0	0.0	1	0	1	0	28	6	3arm	1	nd	0.22	2	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------AAUCAGA--------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------AAATCAGAGTGGATCGTG----------------------------	18	1
cbriggsae	tttgaacatcatttcagggcgccagatccgcgtttcgaactgatgaatggatacatcaaacAAATCAGAGTGGATCGTGgatacgagaagcttggggataaaatcaa
	***********************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029639
	---------------------------------------------------------------------------------------------------------------------	NM_203923
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001111199
	---------------------------------------------------------------------------------------------------------------------	NM_001030661
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001127188
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003666
cbriggsae	.((((.....(((((..(((.....(((((((.((((..(((((.....((....))......)))))..)))).))))))).......)))..)))))....))))	0.960 -27.10

cbriggsae

chromosome:chrX:18869387:18869493:-1

Same_strand|Intronic_coding|NM_001029639|M163.11 ## Opposite_strand|Intronic_non-coding|NM_203923|abcb4 ## Same_strand|Intronic_non-coding|NM_001111199|zgc:173710 ## {Repeats: no}

block4044 [novel_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.465	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	29	5	3arm	47	nd	0.33	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------UAAUGGU------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------GTAATGGTCAGCATGGATGCC-----------------------------	21	1
cbriggsae	cggtttcaagtttttgtggattgtgtacgtgaaggcgcattgttcatttcaacgcgttcgtggtGTAATGGTCAGCATGGATGCCttccaagcattcgacgggggttcgattcc
	******************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_002474
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068772
	----------------------------------------------------------------------------------------------------------------------------	NM_000393
	----------------------------------------------------------------------------------------------------------------------------	NM_001855
	----------------------------------------------------------------------------------------------------------------------------	NM_033150
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_021371
	----------------------------------------------------------------------------------------------------------------------------	NM_201478
	----------------------------------------------------------------------------------------------------------------------------	NM_007732
	----------------------------------------------------------------------------------------------------------------------------	NM_001106366
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001008159
	----------------------------------------------------------------------------------------------------------------------------	NM_001113224
	----------------------------------------------------------------------------------------------------------------------------	NM_001081764
	----------------------------------------------------------------------------------------------------------------------------	NM_001006951
	----------------------------------------------------------------------------------------------------------------------------	NM_001844
	----------------------------------------------------------------------------------------------------------------------------	NM_009928
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_181045
	----------------------------------------------------------------------------------------------------------------------------	NM_001858
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001040113
	----------------------------------------------------------------------------------------------------------------------------	NM_009936
	----------------------------------------------------------------------------------------------------------------------------	NM_001101980
	----------------------------------------------------------------------------------------------------------------------------	NM_000494
	----------------------------------------------------------------------------------------------------------------------------	NM_000089
	----------------------------------------------------------------------------------------------------------------------------	NM_001080091
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001040114
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_073745
	----------------------------------------------------------------------------------------------------------------------------	NM_001001135
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_022844
	----------------------------------------------------------------------------------------------------------------------------	NM_073729
cbriggsae	.((..((.((..(((((.((.(((......((((((((((((..((((.((.(((....))).)).))))..))..)))..)))))))...))).)).)))))..)).))..))	0.680 -31.00

cbriggsae

chromosome:chrV:5897264:5897377:1

Same_strand|Intronic_coding|NM_002474|MYH11 ## Opposite_strand|Intronic_coding|NM_000393|COL5A2 ## Same_strand|Intronic_non-coding|NM_021371|Caln1 ## {Repeats: no}

block2218 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.383	no	no	0.39/0.39	18/18/0.00	0.0	0.0	3	0	1	0	12	0	3arm	1	10	0.22	3	3	1	na	na

		reads	miRBase family seed
seed	----------------------------------UCGAAUU----------------------	3	novel
		len	cloning frequencies
			AF16
	---------------------------------TTCGAATTCTGAGTGTAC------------	18	3
cbriggsae	tttgtgaaatttgatttacgaatctgaaaacgtTTCGAATTCTGAGTGTACaaaattccagga
	***************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009313
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090075
	-------------------------------------------------------------------------	NM_001069271
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090673
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001107085
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>	NM_069310
cbriggsae	((((.(((.(((((((((.((((.((((.....)))).)))))))))...)))).))))))).	0.970 -9.50

cbriggsae

chromosome:chrIV:9304568:9304630:-1

Same_strand|Intronic_non-coding|NM_009313|Tacr1 ## Same_strand|Intronic_coding|NM_001090075|MGC69046 ## Opposite_strand|Intronic_coding|NM_001069271|Os09g0271100 ## {Repeats: no}

block5203 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.695	no	no	0.17/0.17	18/18/0.00	0.0	0.0	1	0	1	0	0	18	5arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	-UGAUUGA-------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	TTGATTGAGTTTTTTTAA---------------------------------------------------------------------------	18	1
cbriggsae	TTGATTGAGTTTTTTTAAaatttttttttttgagttgatagacacagaacaacaaaacacaaaaatccatcaaaattcgaactattcaatgaa
	*********************************************************************************************
	-------------------------------------------------------------------------------------------------------	NM_029869
	-------------------------------------------------------------------------------------------------------	NM_020252
	-------------------------------------------------------------------------------------------------------	NM_133906
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068376
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001014547
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080381
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_021359
	-------------------------------------------------------------------------------------------------------	NM_001083297
	-------------------------------------------------------------------------------------------------------	NM_001083296
cbriggsae	((.(((((((..(((...((((((..((((((.(((...................))).))))))......)))))).)))..))))))).))	0.630 -8.11

cbriggsae

chromosome:chrX:17791732:17791824:1

Opposite_strand|Intronic_non-coding|NM_029869|Zkscan1 ## Same_strand|Intronic_coding|NM_068376|ZK354.3 ## Same_strand|Intronic_non-coding|NM_021359|Itgb6 ## Opposite_strand|Intronic_coding|NM_001083297|psa-3 ## {Repeats: AT_rich 1 22 1 class=Low_complexity}

block2046 [novel_shortStem_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.105	no	no	0.45/0.45	20/20/1.00	0.0	0.0	1	0	1	0	4	-3	3arm_loop	1	nd	0.30	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------AUGGCAU----------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------TATGGCATCTTCCAGTGTGT----	20	1
cbriggsae	tctataccatcaggacctgttaaTATGGCATCTTCCAGTGTGTagaa
	***********************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105717
	---------------------------------------------------------	NM_198022
	---------------------------------------------------------	NM_020066
cbriggsae	((((((.(((..(((..((((.....))))...))).))))))))).	1.000 -9.50

cbriggsae

chromosome:chrIV:3220102:3220148:-1

Same_strand|Intronic_non-coding|NM_001105717|Dpysl2 ## Opposite_strand|Intronic_non-coding|NM_198022|Tnrc6c ## Opposite_strand|Intronic_coding|NM_020066|FMN2 ## {Repeats: no}

block5132 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.257	no	no	0.44/0.44	18/18/0.00	0.0	0.0	1	0	1	0	23	-2	5arm_loop	1	nd	0.39	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------AACCGCC----------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------GAACCGCCGTAGTATTAT------------------------------------	18	1
cbriggsae	ttgtggttccacttcttttacttGAACCGCCGTAGTATTATaaaatacagtatccgttggtcccaagtcttccacag
	*****************************************************************************
cbriggsae	.(((((.............(((((.((((.((..(((((....)))))......)).))))..)))))...))))).	0.930 -13.29

cbriggsae

chromosome:chrX:15678893:15678969:1

{Repeats: no}

block176 [novel_cloningOK_Multihit_shortStem_5varHIGH_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.191	no	no	0.50/0.63	20/27/0.93	4.8	4.1	10	0	1	0	0	-8	3arm	20	nd	0.37	3	14	1	na	na

		reads	miRBase family seed
seed	-----------------------------------CCUUAGG----------------------------	7	novel
seed	---------------------------------------------------CGAAUCC------------	3	novel
seed	------------------------------------------------GUUCGAA---------------	1	novel
seed	-------------------------------------------CGCUGGU--------------------	1	novel
seed	--------------------------------------UAGGUCG-------------------------	1	novel
seed	---------------------------------------AGGUCGC------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------TCCTTAGGTCGCTGGTTCGAATC-------------	23	5
	--------------------------------------------------TCGAATCCGGCTCGACGGAA	20	3
	----------------------------------TCCTTAGGTCGCTGGTTCGAAT--------------	22	2
	-------------------------------------TTAGGTCGCTGGTTCGAATCCG-----------	22	1
	-----------------------------------------------GGTTCGAATCCGGCTCGACGGAA	23	1
	------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA-	27	1
	--------------------------------------TAGGTCGCTGGTTCGAATCCG-----------	21	1
cbriggsae	ttggtagagcggaggactgtagagtcagtgggtaTCCTTAGGTCGCTGGTTCGAATCCGGCTCGACGGAA
	**********************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001032899
	--------------------------------------------------------------------------------	NM_199320
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_005073
cbriggsae	((.((.((((...(((.....((..((((((...........))))))..))...))).)))).)).)).	0.990 -20.60

cbriggsae

chromosome:chrI:8861987:8862056:-1

Same_strand|Intronic_non-coding|NM_001032899|SLC15A1 ## Opposite_strand|Intronic_non-coding|NM_199320|PHF17 ## {Repeats: no}

block5068 [novel_lenNOK_5varHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.45/0.56	18/22/0.33	4.0	1.3	3	0	1	0	8	10	5arm	2	nd	0.28	2	3	1	na	na

		reads	miRBase family seed
seed	---------------AUGCAUG----------------------------------------------------------	1	novel
seed	------------------------------------------------AUGCAUG-------------------------	1	novel
seed	---------UUUACGA----------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------GATGCATGAGCCCTAGAG---------------	18	1
	--------TTTTACGATGCATGAGCCCTAG--------------------------------------------------	22	1
	--------------GATGCATGAGCCCTAGAG------------------------------------------------	18	1
cbriggsae	ttacacttTTTTACGATGCATGAGCCCTAGAGcccatgcatctttacGATGCATGAGCCCTAGAGtcccatgctgtgtag
	********************************************************************************
	------------------------------------------------------------------------------------------	NM_011978
cbriggsae	.(((((...........(((((.((.((((.((.((((((((.....)))))))).)).)))).))..))))).))))).	0.940 -30.80

cbriggsae

chromosome:chrX:14750300:14750379:1

Opposite_strand|Intronic_non-coding|NM_011978|Slc27a2 ## {SimpF: trf}

block164 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.337	no	no	0.42/0.42	19/19/0.00	0.0	0.0	3	0	1	0	7	31	3arm	2	nd	0.32	2	3	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------------------------------AGUUUGU------------------	3	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------------------------------------------TAGTTTGTCTGATGGAGTC-------	19	3
cbriggsae	ctcgaaattttgtccgaaatcaaacaaatgaaaacaatttttcagtttcatcaagccttgataaaacttgtgaatctttgattatctaaTAGTTTGTCTGATGGAGTCaatgagt
	*******************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007386
cbriggsae	((((..((((..((.((...(((((....((.(((((...((((((((.((((.....)))).)))))...)))...))).)).)).....))))))).))..))))...)))).	0.400 -18.50

cbriggsae

chromosome:chrI:8617838:8617952:-1

Same_strand|Intronic_non-coding|NM_007386|Aco1 ## {Repeats: no}

block1868 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.684	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	3	7	5arm	1	nd	0.29	3	1	1	na	na

		reads	miRBase family seed
seed	----AUUUUUA------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---TATTTTTACCACACGGGGTCG-----------------------------------------------------	21	1
cbriggsae	tgtTATTTTTACCACACGGGGTCGgcaaaactgaaagtttatgtgttgagaatctgtaaaatccgtaaaactcgcaa
	*****************************************************************************
cbriggsae	(((...((((((...(((((.((((((((((.....))))...))))))...))))).......))))))...))).	0.960 -11.50

cbriggsae

chromosome:chrIII_random:1972:2048:1

{Repeats: no}

block1231 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.710	no	no	0.36/0.36	22/22/1.00	0.0	0.0	1	0	1	0	6	-1	3arm	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------CAGGUGG--------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------ACAGGTGGTAGTTGTCTTTTTA------	22	1
cbriggsae	atcatcaataatcacgatttccggctgctctaaaactttctcacactcttctACAGGTGGTAGTTGTCTTTTTAggcgat
	********************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_030676
	------------------------------------------------------------------------------------------	NM_062055
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_074739
	------------------------------------------------------------------------------------------	NM_204717
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087841
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001097628
	------------------------------------------------------------------------------------------	NM_174951
	------------------------------------------------------------------------------------------	NM_001114294
	------------------------------------------------------------------------------------------	NM_061996
	------------------------------------------------------------------------------------------	NM_062047
	------------------------------------------------------------------------------------------	NM_061910
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001123635
cbriggsae	(((.((...((..((((((.(((.(((..........................))).))).))))))..))...)).)))	0.520 -9.87

cbriggsae

chromosome:chrII_random:1494664:1494743:1

Same_strand|Intronic_coding|NM_030676|Nr5a2 ## Opposite_strand|Intronic_coding|NM_062055|sri-54 ## Opposite_strand|Intronic_non-coding|NM_204717|ECE1 ## {Repeats: no}

block559 [novel_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.813	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	8	6	3arm	49	nd	0.40	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------CGUUCGU--------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------GCGTTCGTGGTGTAATGGTC--------	20	1
cbriggsae	ccttgtcgccttcatatcattgccctccgctaccttctccgtcgcaGCGTTCGTGGTGTAATGGTCagcatgga
	**************************************************************************
	------------------------------------------------------------------------------------	NM_012655
	------------------------------------------------------------------------------------	NM_001012534
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075505
	------------------------------------------------------------------------------------	NM_013672
	------------------------------------------------------------------------------------	NM_214128
cbriggsae	((.(((.(((...(((((((.((.((..((.((.......)).)))).))..)))))))...)))..))).)).	0.950 -13.90

cbriggsae

chromosome:chrI_random:2960407:2960480:1

Opposite_strand|Intronic_non-coding|NM_012655|Sp1 ## Same_strand|Intronic_non-coding|NM_075505|psa-1 ## {Repeats: no}

block3446 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.460	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	15	-2	5arm_loop	1	nd	0.44	4	1	1	na	na

		reads	miRBase family seed
seed	----------------UAGUGGG----------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------ATAGTGGGGGTTCGTCAT------------------------------------------	18	1
cbriggsae	ctctccttaattattATAGTGGGGGTTCGTCATaagagaaacgggaaggatggagcttgttttggttgggtggga
	***************************************************************************
	-------------------------------------------------------------------------------------	NM_069515
cbriggsae	.((((((((((((..(((....((.((((((.................)))))).)))))..)))))))).))))	0.950 -14.93

cbriggsae

chromosome:chrUn:3529008:3529082:1

Opposite_strand|Intronic_non-coding|NM_069515|R11A8.7 ## {Repeats: no}

block4294 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.319	no	no	0.45/0.45	22/22/1.00	0.0	0.0	1	0	1	0	0	13	5arm	8	nd	0.41	3	1	1	na	na

		reads	miRBase family seed
seed	-CCAGCUA----------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	TCCAGCTAGTGTGTGGTAGAAT--------------------------------------------	22	1
cbriggsae	TCCAGCTAGTGTGTGGTAGAATgctttactcgtgtagatgacacgtgtggtatttcaaacttgggt
	******************************************************************
	----------------------------------------------------------------------------	NM_070863
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062358
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062003
cbriggsae	((((...(((...((...(((((((..((.(((((.....))))).))))))))))).))))))).	0.830 -15.10

cbriggsae

chromosome:chrV_random:1214653:1214718:1

Opposite_strand|Intronic_coding|NM_070863|nhr-250 ## Same_strand|Intronic_coding|NM_062358|srw-40 ## {Repeats: no}

block338 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.118	no	no	0.33/0.33	24/24/1.00	0.0	0.0	1	0	1	0	8	12	3arm	1	nd	0.21	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------------------AAGUUGA------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------------------------------GAAGTTGATGTAATTGGCAATGTT--------	24	1
cbriggsae	gagtccatttgattgtcgaacacctctttgttacaatcgacgggaatggagttcgaaaacccttccgaatttccattGAAGTTGATGTAATTGGCAATGTTagtgtctc
	*************************************************************************************************************
	-----------------------------------------------------------------------------------------------------------------------	NM_001087019
	-----------------------------------------------------------------------------------------------------------------------	NM_011380
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020433
	-----------------------------------------------------------------------------------------------------------------------	NM_059033
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080788
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001024857
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001024856
cbriggsae	(((..((((..(((((((...........(((((.((((((...(((((((((((..........)))))).)))))...))))))))))))))))))...)))).)))	0.640 -27.00

cbriggsae

chromosome:chrI:6729700:6729808:1

Opposite_strand|Intronic_non-coding|NM_001087019|nr2f2 ## Same_strand|Intronic_coding|NM_020433|JPH2 ## Opposite_strand|Intronic_coding|NM_059033|C10H11.7 ## {Repeats: no}

block1445 [novel_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.019	no	no	0.29/0.29	21/21/1.00	0.0	0.0	1	0	1	0	19	15	3arm	12	nd	0.43	5	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AUAUGAU--------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------TATATGATTTTTGGAACCTAG-------------------	21	1
cbriggsae	tagctaagatcaaagtgtagtatctgttcttatcgtattaacctacggtatacactcgaatgagtgtaataaaggtTATATGATTTTTGGAACCTAGgaaagactcggggcttgct
	********************************************************************************************************************
	------------------------------------------------------------------------------------------------------------------------------	NM_011448
	------------------------------------------------------------------------------------------------------------------------------	NM_201507
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_111620
	------------------------------------------------------------------------------------------------------------------------------	NM_001088088
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001066926
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_004521
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001020307
	------------------------------------------------------------------------------------------------------------------------------	NM_007393
	------------------------------------------------------------------------------------------------------------------------------	NM_122291
	------------------------------------------------------------------------------------------------------------------------------	NM_001128112
	------------------------------------------------------------------------------------------------------------------------------	NM_067241
	------------------------------------------------------------------------------------------------------------------------------	NM_001129943
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039838
cbriggsae	.(((.(((.((..(((.........(((((.((((((.((((((...((.(((((((....)))))))))..))))))))))))....))))).........)))..)).))))))	0.900 -29.47

cbriggsae

chromosome:chrIII:8099614:8099729:-1

Opposite_strand|Intronic_non-coding|NM_011448|Sox9 ## Same_strand|Intronic_coding|NM_111620|AtRABA5b ## Same_strand|Intronic_non-coding|NM_004521|KIF5B ## Opposite_strand|Intronic_coding|NM_001128112|ci-arfgap-2 ## {Repeats: no}

block888 [novel_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.054	no	no	0.46/0.46	24/24/1.00	0.0	0.0	1	0	1	0	4	-3	5arm_loop	1	nd	0.33	4	1	1	na	na

		reads	miRBase family seed
seed	-----UUGAUGG--------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----GTTGATGGTCCATGAGAATGCTTC----------------------------------	24	1
cbriggsae	ttgaGTTGATGGTCCATGAGAATGCTTCaaaaatgtgtttcgctgggaccatttcgaatcga
	**************************************************************
	------------------------------------------------------------------------	NM_001017803
	------------------------------------------------------------------------	NM_077434
	------------------------------------------------------------------------	NM_171029
	------------------------------------------------------------------------	NM_171855
cbriggsae	((((.((((((((((....((((((.........)))))).....))))))..)))).))))	0.980 -16.40

cbriggsae

chromosome:chrII:2724288:2724349:1

Opposite_strand|Intronic_coding|NM_001017803|zgc:111983 ## {Repeats: no}

block2941 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.594	no	no	0.52/0.52	29/29/0.00	0.0	0.0	1	0	1	0	2	6	5arm	3	nd	0.41	4	1	1	na	na

		reads	miRBase family seed
seed	---UGGUUAC------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--ATGGTTACCTAAGGCTCATGTTGAGGCCC---------------------------------------------	29	1
cbriggsae	ctATGGTTACCTAAGGCTCATGTTGAGGCCCccactacagctagtatacttttagcaggccttttattaaaattgg
	****************************************************************************
cbriggsae	(((...(((...((((((..((((((((.....((((....))))....))))))))))))))....)))...)))	0.640 -12.80

cbriggsae

chromosome:chrM:6759:6834:-1

{Repeats: no}

block3106 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.365	no	no	0.19/0.19	21/21/1.00	0.0	0.0	1	0	1	0	35	2	3arm	3	nd	0.29	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------UUUUAAA------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------ATTTTAAAATGTTTACTTGTG-----------------------------------	21	1
cbriggsae	ttagataattttaagagatgatgttttggtactatagaataatttagcttaatagtttATTTTAAAATGTTTACTTGTGgtgtaaaagaaatttagagctttaaaatttattta
	******************************************************************************************************************
cbriggsae	.(((((((.(((.((((.(((..((((..((((((((((((.(((((..(((....)))..))))).)))))...)))))))..))))....)))...)))).))).)))))))	0.970 -16.30

cbriggsae

chromosome:chrUn:4217517:4217630:-1

{Repeats: no}

block2652 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.627	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	8	18	5arm	1	24	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	---------UCACAGC------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------TTCACAGCTTGGACAATTG-------------------------------------------------------------------	19	1
cbriggsae	aactctagTTCACAGCTTGGACAATTGaaaaatgacttccggaagtttcagatcttcgacgaaggaatcgctcaatacatgttgactgatgttg
	**********************************************************************************************
	--------------------------------------------------------------------------------------------------------	NM_001027775
	--------------------------------------------------------------------------------------------------------	NM_066961
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	NM_001038343
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068444
cbriggsae	(((..((((...((((.((....(((((...((..((((..((((........))))...))))..))...))))).)).))))))))..))).	0.700 -16.70

cbriggsae

chromosome:chrIV:8412671:8412764:1

Opposite_strand|Intronic_coding|NM_001027775|Y75B8A.37 ## Opposite_strand|Intronic_non-coding|NM_066961|W09D10.4 ## Same_strand|Intronic_coding|NM_001038343|T19E7.6 ## {Repeats: no}

block952 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.018	no	no	0.36/0.36	22/22/1.00	0.0	0.0	1	0	1	0	3	4	5arm	1	nd	0.41	4	1	1	na	na

		reads	miRBase family seed
seed	----AGUUCUA---------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---AAGTTCTATGGCACAGTATATC-------------------------------------	22	1
cbriggsae	catAAGTTCTATGGCACAGTATATCagtgaggaacagtgagatgatttgtgagaagttgtga
	**************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020252
	------------------------------------------------------------------------	NM_063458
	------------------------------------------------------------------------	NM_059843
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_183355
	------------------------------------------------------------------------	NM_073745
	------------------------------------------------------------------------	NM_001080181
	..............................................<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_064115
	..............................................<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_064114
cbriggsae	(((((.((((....(((((....(((.((.....)).)))......))))))))).))))).	1.000 -14.60

cbriggsae

chromosome:chrII:6494209:6494270:1

Same_strand|Intronic_non-coding|NM_020252|Nrxn1 ## Opposite_strand|Intronic_coding|NM_063458|T01B7.8 ## Opposite_strand|Intronic_non-coding|NM_001080181|zgc:158678 ## {Repeats: no}

block2980 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.195	no	no	0.58/0.58	24/24/1.00	0.0	0.0	1	0	1	0	2	12	3arm	10	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------AUAACCC------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------------------------CATAACCCAGAGGTCGGTGGATCG--	24	1
cbriggsae	tcgactcacagacatcggtagcagcgtggcgcagtggaagcgtgctgggccCATAACCCAGAGGTCGGTGGATCGaa
	*****************************************************************************
cbriggsae	((((..(((.(((.(((((....((.((((((.((....)))))))).)).....)))..)).))).)))..)))).	0.920 -27.10

cbriggsae

chromosome:chrUn:819342:819418:-1

{Repeats: no}

block2015 [novel_cloningOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.681	no	no	0.35/0.35	20/20/1.00	0.0	0.0	5	0	1	0	8	14	5arm	1	nd	0.35	4	5	1	na	na

		reads	miRBase family seed
seed	---------UUUUCAC------------------------------------------------------------------------------	5	novel
		len	cloning frequencies
			AF16
	--------TTTTTCACAGAGTCAATAGG------------------------------------------------------------------	20	5
cbriggsae	tttgacaaTTTTTCACAGAGTCAATAGGaagttttgctaatttttcaactaattgtaagttcactaaatttaaactcaaaaaaatttttcgaat
	**********************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020714
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_060105
cbriggsae	(((((.(((((((....((((...((((((..(((((.((((........)))))))))))).))).......))))..)))))))..))))).	0.800 -8.90

cbriggsae

chromosome:chrIV:2639177:2639270:-1

Same_strand|Intronic_non-coding|NM_020714|ZNF490 ## {Repeats: no}

block2866 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.327	no	no	0.48/0.48	23/23/1.00	0.0	0.0	1	0	1	0	9	13	3arm	1	nd	0.35	4	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------------------UCUUGUU------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------------------------------------------------GTCTTGTTCAGCATTCGGTTGAG---------	23	1
cbriggsae	gttgcattgatcagccagttgagtgaatgaatggaatttttttgataaggctttgacaatattcttctttttatcGTCTTGTTCAGCATTCGGTTGAGaaagccaca
	***********************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075117
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061879
	---------------------------------------------------------------------------------------------------------------------	NM_067650
cbriggsae	((.((.((..((((((........(((((....((((.....((((((((....((......))....))))))))....))))..)))))))))))..)))).)).	0.810 -21.70

cbriggsae

chromosome:chrIV_random:166060:166166:-1

Same_strand|Intronic_non-coding|NM_075117|Y59A8B.22 ## Opposite_strand|Intronic_non-coding|NM_067650|Y104H12D.3 ## {Repeats: no}

block4937 [novel_Multihit_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.839	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	3	26	3arm	49	nd	0.35	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------CGUUCGU---------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------------------------GCGTTCGTGGTGTAATGGTC---	20	1
cbriggsae	ctgctaaacaaaccaagttgatgagtggtgacgaatggtggggattgcaaatcaaatacgaaaccttgtgatttttttctcaaccGCGTTCGTGGTGTAATGGTCagc
	************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001091421
	----------------------------------------------------------------------------------------------------------------------	NM_019747
	----------------------------------------------------------------------------------------------------------------------	NM_178498
	----------------------------------------------------------------------------------------------------------------------	NM_016530
	----------------------------------------------------------------------------------------------------------------------	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_177732
cbriggsae	((((((.....((((...(((...(((((((.(((....((((((..(((.((......))....)))..)))))))))))).))))..)))))))....))).))).	0.890 -21.80

cbriggsae

chromosome:chrX:8957982:8958089:1

Same_strand|Intronic_non-coding|NM_001091421|MGC83888 ## Opposite_strand|Intronic_non-coding|NM_019747|Zfp113 ## {Repeats: no}

block4724 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.546	no	no	0.47/0.47	19/19/0.00	0.0	0.0	1	0	1	0	34	-1	5arm_loop	2	nd	0.37	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------AAGAGUA------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------GAAGAGTATGTGATTGGGC-------------------------------------------------------------------	19	1
cbriggsae	gcaatcgaatcgttagtgaacatggctggcataaGAAGAGTATGTGATTGGGCctgcaacttatttcgaaatttccaaccaaattttcttcgcttacagtcgtgtctggttctgtgagcg
	************************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------------	NM_203923
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001111199
	----------------------------------------------------------------------------------------------------------------------------------	NM_001030661
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003666
cbriggsae	((.((.((((((.....((.((((((((......((((((....((.(((((.....................))))).))....)))))).....)))))))))))))))).))..)).	0.980 -27.90

cbriggsae

chromosome:chrX:18772023:18772142:-1

Opposite_strand|Intronic_non-coding|NM_203923|abcb4 ## Same_strand|Intronic_non-coding|NM_001111199|zgc:173710 ## Same_strand|Intronic_coding|NM_001003666|Zfp457 ## {Repeats: no}

block846 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.497	no	no	0.40/0.40	20/20/1.00	0.0	0.0	1	0	1	0	1	15	3arm	1	nd	0.20	2	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------AAGAUGA-------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------GAAGATGAGAAGTACTGGAA-	20	1
cbriggsae	acttgttggtgacttgacatccgtactcggtcattttattgatttgtgtgtgctGAAGATGAGAAGTACTGGAAg
	***************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	-------------------------------------------------------------------------------------	NM_177366
	-------------------------------------------------------------------------------------	NM_001107213
	-------------------------------------------------------------------------------------	NM_061557
	-------------------------------------------------------------------------------------	NM_201205
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020988
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.................................................	NM_170973
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.................................................	NM_170974
cbriggsae	.(((.(((((.((((..((((.((((.((((((......))))...)).))))....))))..))))))))))))	0.420 -13.80

cbriggsae

chromosome:chrII:13928674:13928748:-1

Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_non-coding|NM_177366|Gpr157 ## Opposite_strand|Intronic_coding|NM_061557|rog-1 ## {Repeats: no}

block4379 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.074	no	no	0.42/0.42	19/19/0.00	0.0	0.0	2	0	1	0	0	5	5arm	1	nd	0.26	3	2	1	na	na

		reads	miRBase family seed
seed	-AGCAUCC------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	GAGCATCCATTGGAAAGAA-------------------------------------	19	2
cbriggsae	GAGCATCCATTGGAAAGAAgtccttcgagcaacgggagtactttcggagtggatct
	********************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_076104
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_029999
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_022410
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031169
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027419
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_175605
	------------------------------------------------------------------	NM_181850
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_022416
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_006531
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110786
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033509
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122952
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122953
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010905
cbriggsae	.((.(((((((.(((((...((((.........))))...))))).)).)))))))	0.960 -14.20

cbriggsae

chromosome:chrX:3802323:3802378:-1

Same_strand|Intronic_non-coding|NM_076104|Y71H10A.2 ## Same_strand|Intronic_coding|NM_175605|IFT88 ## Opposite_strand|Intronic_non-coding|NM_181850|Grm3 ## {Repeats: no}

block1038 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.074	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	19	11	5arm	9	nd	0.33	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------CAGAAGA--------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------TCAGAAGAGATTGTGTGATGG-------------------------------------------------------	21	1
cbriggsae	atgcatacttcctagggacTCAGAAGAGATTGTGTGATGGaaaccccccagagacctagggtgtatcccgggaattttctgagctctgtgttgca
	***********************************************************************************************
	---------------------------------------------------------------------------------------------------------	NM_001039389
cbriggsae	.((((.((....(((((.(((((((((..((.((....(((.((.(((.((....)).))).)).))))).)).)))))))))))))).))))))	0.870 -29.80

cbriggsae

chromosome:chrII:11713843:11713937:1

Opposite_strand|Intronic_non-coding|NM_001039389|Wdr37 ## {Repeats: no}

block2948 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.492	no	no	0.35/0.38	20/22/1.00	0.0	1.0	3	0	1	0	22	7	3arm	2	nd	0.18	2	3	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------GUGAGUU------------------------------------	3	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------AGTGAGTTCATAAAGCAAGT------------------------	20	1
	------------------------------------------------------AGTGAGTTCATAAAGCAAGTCT----------------------	22	1
	------------------------------------------------------AGTGAGTTCATAAAGCAAGTC-----------------------	21	1
cbriggsae	ttgatatagcataagaagtgcatttgttttaagcgcaaaagatataagtcaactAGTGAGTTCATAAAGCAAGTCTtctaaatttgttctaggttaaa
	**************************************************************************************************
cbriggsae	(((((.(((.((((((((...(((((((((((((.((...(((....)))......)).)))..))))))))))))))).....))).))).))))).	0.840 -14.60

cbriggsae

chromosome:chrM:10685:10782:-1

{Repeats: no}

sblock82 [novel_multiarm_DicerNOK_shortStem_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.43/0.56	18/21/0.75	0.0 0.0	1.0 0.0	2 2	0 0	1 1	0 0	3 2	14 14	5arm 3arm	2 2	nd nd	0.33 0.24	4 2	4	1	-1	2

		reads	miRBase family seed
seed	----AUGCAUG-------------------------------------------------------------------	2	novel
seed	--------------------------------------------------------AACUAAG---------------	2	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------AAACTAAGGGGTACGTATCGT--	21	2
	---GATGCATGAGCCCTAGAGTC-------------------------------------------------------	20	1
	---GATGCATGAGCCCTAGAG---------------------------------------------------------	18	1
cbriggsae	tacGATGCATGAGCCCTAGAGTCccatgctgtgtagttacaactacacggtatatAAACTAAGGGGTACGTATCGTac
	******************************************************************************
	----------------------------------------------------------------------------------------	NM_011978
cbriggsae	((((((((....(((((..(((...((((((((((((....))))))))))))....)))..)))))..)))))))).	1.000 -33.80

cbriggsae

chromosome:chrX:14750344:14750421:1

Opposite_strand|Intronic_non-coding|NM_011978|Slc27a2 ## {Repeats: no} ## {SimpF: trf}

block2148 [novel_lenNOK_mirtron_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.017	no	no	0.33/0.33	18/18/0.00	0.0	0.0	2	0	1	0	10	22	3arm	1	4	0.50	4	2	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------------CUCUGAC--------------------	2	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------------------------TCTCTGACACTTAAAATC----------	18	2
cbriggsae	ctgatagtgagaagaaaagttgattgtctgtttcaaggtttccattattttggtgatcttctttacggtcaaTCTCTGACACTTAAAATCaagtttcagc
	****************************************************************************************************
	--------------------------------------------------------------------------------------------------------------	NM_134696
	--------------------------------------------------------------------------------------------------------------	NM_026485
	--------------------------------------------------------------------------------------------------------------	NM_004845
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>	NM_068586
cbriggsae	((((...(((.(((...((..(((((.((((...((((((.(((......))).))))))....)))).))))).))....)))....)))....)))).	0.940 -25.00

cbriggsae

chromosome:chrIV:6980234:6980333:-1

Opposite_strand|Intronic_coding|NM_134696|CG2839 ## Opposite_strand|Intronic_non-coding|NM_026485|Trabd ## Same_strand|Intronic_coding|NM_068586|Y73B6BL.1 ## {Repeats: no}

block2446 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.038	no	no	0.52/0.52	21/21/1.00	0.0	0.0	2	0	1	0	11	10	3arm	8	nd	0.33	2	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------UCCGAUC------------------------	2	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------GTCCGATCTGGCAAGTTAAGC-----------	21	2
cbriggsae	ttggttaagtgcgcaaagccgcgagatgtcggtcgcttaatttcacagaaataagagggcaagcGTCCGATCTGGCAAGTTAAGCaacgttgacta
	************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_119656
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070346
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_119655
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000379
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001159
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001043860
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001043868
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001056955
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_079613
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205127
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001081990
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_176668
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001008527
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001009217
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001092592
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001038692
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001044749
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039601
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001048132
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_017154
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011723
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_173972
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009676
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_023631
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_023617
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_019363
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001008419
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122938
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001008523
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001008522
cbriggsae	.(((((((((..((..(((.((.(((..((((.(((((..((((..........))))..))))).))))))).))..)))..)).)).)))))))	0.980 -29.20

cbriggsae

chromosome:chrIV:2308387:2308482:1

Same_strand|Intronic_coding|NM_119656|AT4G34900 ## {Repeats: no}

block1298 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.726	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	12	20	3arm	1	nd	0.26	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AUGACAC-----------------------	1	miR-64
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------CATGACACTGAAGCGGGAT------------	19	1
cbriggsae	gcgtccgaggaggtgtcgccggaggtgtcgccaatctcatggagctgagcattctcttcaaatcttccagaaggacCATGACACTGAAGCGGGATtggaccggtcgc
	***********************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061083
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065151
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_212962
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061083
	---------------------------------------------------------------------------------------------------------------------	NM_061817
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065067
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068002
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067633
	---------------------------------------------------------------------------------------------------------------------	NM_067597
	---------------------------------------------------------------------------------------------------------------------	NM_102069
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_003107
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027705
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_019674
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027238
	---------------------------------------------------------------------------------------------------------------------	NM_001018756
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001082323
	---------------------------------------------------------------------------------------------------------------------	NM_075459
	---------------------------------------------------------------------------------------------------------------------	NM_003972
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001026490
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075132
	---------------------------------------------------------------------------------------------------------------------	NM_075283
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070558
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064510
	---------------------------------------------------------------------------------------------------------------------	NM_075402
	---------------------------------------------------------------------------------------------------------------------	NM_065104
	---------------------------------------------------------------------------------------------------------------------	NM_065222
	---------------------------------------------------------------------------------------------------------------------	NM_075409
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_170844
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182229
cbriggsae	(((.(((....(((.((((....(((((((....(((..(((((.((((.......))))....)))))..)))....)))))))...)))).)))....))).)))	0.600 -31.90

cbriggsae

chromosome:chrIII:1274841:1274947:-1

Same_strand|Intronic_coding|NM_061083|clec-114 ## Same_strand|Intronic_non-coding|NM_065151|W04B5.3 ## Opposite_strand|Intronic_non-coding|NM_061817|cct-3 ## Opposite_strand|Intronic_coding|NM_001018756|fft1 ## {Repeats: no}

block4565 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.663	no	no	0.40/0.40	25/25/0.00	0.0	0.0	1	0	1	0	7	2	3arm	1	nd	0.32	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------AAUGCCC------------------------	1	miR-786
		len	cloning frequencies
			AF16
	----------------------------------------------GAATGCCCTTGTCATTAATCGAAGT-------	25	1
cbriggsae	ataatttattttttcatttgaaaataaagtagctctgtgacgctcaGAATGCCCTTGTCATTAATCGAAGTaattgta
	******************************************************************************
	----------------------------------------------------------------------------------------	NM_177736
	----------------------------------------------------------------------------------------	NM_133381
	----------------------------------------------------------------------------------------	NM_001110160
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001086847
	----------------------------------------------------------------------------------------	NM_001065160
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001082087
	----------------------------------------------------------------------------------------	NM_001083653
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067757
cbriggsae	((((((.....((((..((((..((((.(((..((((.......)))).)))..))))..))))..)))).)))))).	0.680 -9.40

cbriggsae

chromosome:chrX:13401731:13401808:-1

Opposite_strand|Intronic_non-coding|NM_177736|Lrrc61 ## Same_strand|Intronic_non-coding|NM_001086847|MGC53595 ## Opposite_strand|Intronic_coding|NM_001065160|Os06g0725900 ## Same_strand|Intronic_coding|NM_001082087|KCNB1 ## {Repeats: no}

block2997 [novel_lenNOK_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.425	no	no	0.56/0.56	18/18/0.00	0.0	0.0	1	0	1	0	2	16	3arm	1	nd	0.28	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------GUCCGUG------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------------GGTCCGTGGTCCAAAGAT--	18	1
cbriggsae	ggcttcgttccacaggatttcacttctccgttgatagaatctcacagtgcagaattgttcGGTCCGTGGTCCAAAGATca
	********************************************************************************
cbriggsae	(((((....((((.(((((.((.((((.(((((...........))))).)))).))...)))))))))....))).)).	0.800 -15.70

cbriggsae

chromosome:chrUn:1256412:1256491:-1

{Repeats: no}

block2362 [novel_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.776	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	12	4	3arm	49	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------CGUUCGU------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------------GCGTTCGTGGTGTAATGGTC------------	20	1
cbriggsae	gcgtctctcccgccgccgccactttccccctccttcttatacgccgttcccctccctccccgccatgcGCGTTCGTGGTGTAATGGTCagcatggatgcc
	****************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_123965
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_024349
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008091
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_019034
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001016369
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001032772
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001040602
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001093711
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001095157
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199692
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001033835
	--------------------------------------------------------------------------------------------------------------	NM_001047948
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_175092
	--------------------------------------------------------------------------------------------------------------	NM_065286
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001123190
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001126828
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001010953
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001127285
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070587
cbriggsae	((((((.....((((.((((((..................(((((((.................))).))))..))))))...))))......)))))).	0.900 -19.38

cbriggsae

chromosome:chrIV:686298:686397:1

block2950 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.302	no	no	0.21/0.21	19/19/0.00	0.0	0.0	1	0	1	0	17	-4	3arm_loop	2	nd	0.37	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------UUUUAUA----------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------TTTTTATATCTTAACGAGT-----------------	19	1
cbriggsae	agtgttttgtgttttttattcaaagttatattttttctcgtttaatcTTTTTATATCTTAACGAGTaaaaaaaaaagatgtta
	***********************************************************************************
cbriggsae	((..((((...((((((((((.(((.((((.....................)))).)))...))))))))))..))))..)).	0.840 -10.50

cbriggsae

chromosome:chrM:10838:10920:-1

{Repeats: no}

block359 [novel_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.028	no	no	0.29/0.29	21/21/1.00	0.0	0.0	1	0	1	0	19	15	3arm	12	nd	0.43	5	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AUAUGAU--------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------TATATGATTTTTGGAACCTAG-------------------	21	1
cbriggsae	tagctaagatcaaagtgtagtatctgttcttatcgtattaacctaccgtatacactcgaatgagtgtaataaaggtTATATGATTTTTGGAACCTAGgaaagactcggggcttgct
	********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008855
	------------------------------------------------------------------------------------------------------------------------------	NM_176035
	------------------------------------------------------------------------------------------------------------------------------	NM_205985
	------------------------------------------------------------------------------------------------------------------------------	NM_205986
	------------------------------------------------------------------------------------------------------------------------------	NM_102365
	------------------------------------------------------------------------------------------------------------------------------	NM_001084127
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068405
	------------------------------------------------------------------------------------------------------------------------------	NM_001009899
cbriggsae	.(((.(((.((..(((.........(((((.((((((.((((((......(((((((....)))))))....))))))))))))....))))).........)))..)).))))))	0.900 -28.67

cbriggsae

chromosome:chrI:8160552:8160667:1

block3487 [novel_lenNOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.484	no	no	0.36/0.36	25/25/0.00	0.0	0.0	1	0	1	0	16	18	5arm	3	nd	0.28	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------UUACUAG------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------TTTACTAGAGTTGATATGTCGACCT-------------------------------------------------------------------------------	25	1
cbriggsae	catactaaaaatcactTTTACTAGAGTTGATATGTCGACCTttgtgataactgtttttattattatattagaaaattatatattgcatatttattttaggaaaattaaaatttgaagtgt
	************************************************************************************************************************
cbriggsae	.(((((..((((...((((.(((((((.((((((.(((....((((((.....((((((.........))))))))))))..))))))))).))))))).)))).....))))..)))))	0.590 -16.20

cbriggsae

chromosome:chrUn:4251811:4251930:1

{Repeats: no}

block2873 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.169	no	no	0.71/0.71	21/21/1.00	0.0	0.0	1	0	1	0	20	-2	5arm_loop	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------UCCGCCC------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------GTCCGCCCGAGGAACGCGCAT-----------------------------------------------	21	1
cbriggsae	ctcgcaccgactgaccgcttGTCCGCCCGAGGAACGCGCATaaagaggcggtccctcgggtaacatcccatcgctccttaatgtcgag
	****************************************************************************************
cbriggsae	((((((..((.(((.....(((..((((((((.((.(((........))))).)))))))).))).....))).)).....)).))))	0.690 -28.10

cbriggsae

chromosome:chrIV_random:277788:277875:-1

{Repeats: no}

block1345 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.521	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	19	13	5arm	1	nd	0.30	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------UUGGUUG----------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------GTTGGTTGGGACTGCTTTTG----------------------------------------------------------------------	20	1
cbriggsae	tcgtaattcgttcgaaaatGTTGGTTGGGACTGCTTTTGaaatataaatattataaaaattagaaacaatcaagagagagggagaatcatagtttgggtggggaaaaga
	*************************************************************************************************************
	-----------------------------------------------------------------------------------------------------------------------	NM_214211
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_172925
	-----------------------------------------------------------------------------------------------------------------------	NM_001011629
	-----------------------------------------------------------------------------------------------------------------------	NM_001035248
	-----------------------------------------------------------------------------------------------------------------------	NM_057428
	-----------------------------------------------------------------------------------------------------------------------	NM_001062274
	-----------------------------------------------------------------------------------------------------------------------	NM_001005123
	-----------------------------------------------------------------------------------------------------------------------	NM_001091987
	-----------------------------------------------------------------------------------------------------------------------	NM_001069872
	-----------------------------------------------------------------------------------------------------------------------	NM_001069872
	-----------------------------------------------------------------------------------------------------------------------	NM_205075
	-----------------------------------------------------------------------------------------------------------------------	NM_001037113
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_133195
	-----------------------------------------------------------------------------------------------------------------------	NM_001022613
	-----------------------------------------------------------------------------------------------------------------------	NM_001019821
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007496
	-----------------------------------------------------------------------------------------------------------------------	NM_003333
	-----------------------------------------------------------------------------------------------------------------------	NM_003333
	-----------------------------------------------------------------------------------------------------------------------	NM_001033930
	-----------------------------------------------------------------------------------------------------------------------	NM_001076363
	-----------------------------------------------------------------------------------------------------------------------	NM_001124194
	-----------------------------------------------------------------------------------------------------------------------	NM_001126212
	-----------------------------------------------------------------------------------------------------------------------	NM_001009286
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065840
	-----------------------------------------------------------------------------------------------------------------------	NM_080331
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_024149
cbriggsae	......((((..((((.....(((((....((.(((((((.........(((.....))).........)))))))...))...)))))...))))..)))).......	0.590 -14.77

cbriggsae

chromosome:chrIII:2935496:2935604:-1

Opposite_strand|Intronic_coding|NM_214211|UBA52 ## Same_strand|Intronic_non-coding|NM_172925|Klhl31 ## Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_coding|NM_065840|SR-famA ## {Repeats: AT_rich 1 23 -1 class=Low_complexity}

block1784 [novel_lenNOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.364	no	no	0.48/0.48	25/25/0.00	0.0	0.0	1	0	1	0	34	-3	3arm_loop	1	nd	0.28	4	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------UAUCUAU---------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------------GTATCTATCAAGACGCCCATTGTGG----------------------------------	25	1
cbriggsae	tcgagatgaattggtcgaacctcgagacctttaaccgcggcattgaggtctgatagaacGTATCTATCAAGACGCCCATTGTGGtaatcctcttcaaactttttccagctcttccgga
	**********************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------------	NM_075282
	--------------------------------------------------------------------------------------------------------------------------------	NM_133381
	--------------------------------------------------------------------------------------------------------------------------------	NM_008273
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001094712
	--------------------------------------------------------------------------------------------------------------------------------	NM_199449
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065202
cbriggsae	(((.((.((.((((..(((....((((...((.((((((((......((((((((((.....))))))).))))))....)))))))...)))).....)))..)))).)).))))).	0.710 -27.10

cbriggsae

chromosome:chrIII:10225892:10226009:1

Opposite_strand|Intronic_non-coding|NM_075282|wrs-1 ## Opposite_strand|Intronic_coding|NM_008273|Hoxd11 ## Same_strand|Intronic_non-coding|NM_001094712|LOC495006 ## {Repeats: no}

block4560 [novel_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.696	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	8	4	5arm	49	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	---------CGUUCGU------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------GCGTTCGTGGTGTAATGGTC------------------------------------	20	1
cbriggsae	gacatccaGCGTTCGTGGTGTAATGGTCagcatggatgccttccaagcattcgacgggggttcg
	****************************************************************
	--------------------------------------------------------------------------	NM_001108848
	--------------------------------------------------------------------------	NM_133381
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001045626
	--------------------------------------------------------------------------	NM_004845
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001086847
	--------------------------------------------------------------------------	NM_001065160
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001082087
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001017762
cbriggsae	((.((((..((.(((.(((((..(((...(((....)))...))).)))))))))).)))))).	0.710 -16.80

cbriggsae

chromosome:chrX:13287380:13287443:-1

block2002 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.195	no	no	0.40/0.40	20/20/1.00	0.0	0.0	1	0	1	0	8	3	5arm	2	nd	0.50	3	1	1	na	na

		reads	miRBase family seed
seed	---------GACAAUG--------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------TGACAATGATTTAGGTGAGG--------------------------------------	20	1
cbriggsae	attgaagtTGACAATGATTTAGGTGAGGaaaaaatataatttcaattttttttctggaaatttcaa
	******************************************************************
cbriggsae	.((((((((..((..((...((((...((((........)))).))))..))..))..))))))))	0.960 -9.40

cbriggsae

chromosome:chrIV:2419758:2419823:-1

{Repeats: no}

block2329 [novel_lenNOK_shortStem_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.649	no	no	0.31/0.31	26/26/0.00	0.0	0.0	1	0	1	0	4	-2	5arm_loop	1	nd	0.27	3	1	1	na	na

		reads	miRBase family seed
seed	-----AUUAGAG--------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----GATTAGAGTTTAAGTCTCAAAATGCT--------------------------------------------------	26	1
cbriggsae	cattGATTAGAGTTTAAGTCTCAAAATGCTatttttcccgttttgattttgatacgatgacctggaaattattttaatga
	********************************************************************************
	------------------------------------------------------------------------------------------	NM_065289
	------------------------------------------------------------------------------------------	NM_064155
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061965
	------------------------------------------------------------------------------------------	NM_075402
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001024205
	------------------------------------------------------------------------------------------	NM_001026513
	------------------------------------------------------------------------------------------	NM_001094113
	------------------------------------------------------------------------------------------	NM_001091618
	------------------------------------------------------------------------------------------	NM_001034557
	------------------------------------------------------------------------------------------	NM_075282
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064619
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028390
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001124458
cbriggsae	((((((.(((..((((.(((((((((((..........))))))))............))).))))..)))..)))))).	0.720 -10.10

cbriggsae

chromosome:chrIV:14453226:14453305:-1

Opposite_strand|Intronic_non-coding|NM_065289|Y53G8AR.9 ## Same_strand|Intronic_non-coding|NM_061965|F08D12.1 ## {Repeats: no}

block3666 [novel_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.368	no	no	0.55/0.55	22/22/1.00	0.0	0.0	1	0	1	0	2	17	5arm	15	nd	0.23	3	1	1	na	na

		reads	miRBase family seed
seed	---UUUCGAG----------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--GTTTCGAGTGTGTGTGCGCCTT--------------------------------------------------	22	1
cbriggsae	ccGTTTCGAGTGTGTGTGCGCCTTtaaccccttcgtggcgagatctcaacgatagggcgcgcttgcacgaaggg
	**************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_071109
	------------------------------------------------------------------------------------	NM_072517
cbriggsae	((.(((...(((((.(((((((((........((((...((....)).)))).))))))))).)))))))).))	0.750 -24.60

cbriggsae

chromosome:chrV:2478243:2478316:-1

Same_strand|Intronic_coding|NM_071109|Y46H3A.4 ## Opposite_strand|Intronic_coding|NM_072517|srh-92 ## {Repeats: no}

block3606 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.272	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	15	0	3arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------AGCCAGU----------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------GAGCCAGTTCGAATGAATGGG---------------	21	1
cbriggsae	caaagttgaacgcctctcctcttggcttaattgGAGCCAGTTCGAATGAATGGGcgaaatcatccttgg
	*********************************************************************
cbriggsae	(((...(((.(((((.((.(((((((((.....)))))))...))..))..)))))...)))...))).	0.530 -16.10

cbriggsae

chromosome:chrUn:6895347:6895415:1

{Repeats: no}

block2927 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.317	no	no	0.38/0.38	24/24/1.00	0.0	0.0	1	0	1	0	30	-4	5arm_loop_3arm	2	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------AAGAAAG---------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------TAAGAAAGGAGAAGGCTTAGTAGT-----------------------------------------------------------	24	1
cbriggsae	gttttacatcgatgttgtattcagataatcTAAGAAAGGAGAAGGCTTAGTAGTttagactgttcttctattaaataatctgacgtgatattagtttaattcattgtgagata
	*****************************************************************************************************************
cbriggsae	((((((((..(((((((...((((((.((.(((...(((((((((..(((....)))..)).))))))).))).)).))))))..)))))))............)))))))).	0.510 -18.84

cbriggsae

chromosome:chrM:2607:2719:-1

{Repeats: no}

block3711 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.873	no	no	0.50/0.50	22/22/1.00	0.0	0.0	1	0	1	0	18	-2	5arm_loop	1	nd	0.45	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------UUGUCCU---------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------GTTGTCCTTGCTGTGCCACATT-------------------------------------	22	1
cbriggsae	cacgtactccagatgataGTTGTCCTTGCTGTGCCACATTtttgtttccactcgaatccacgccgtcagccatacgt
	*****************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062569
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062548
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062490
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027169
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_069339
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_069380
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_069341
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062753
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062505
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062748
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062764
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062571
	---------------------------------------------------------------------------------------	NM_070877
	---------------------------------------------------------------------------------------	NM_071913
	---------------------------------------------------------------------------------------	NM_032435
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_112328
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001125155
	<<<<<----------------------------------------------------------------------------------	NM_058341
cbriggsae	.(((((.......(((..((((...(((..(((..(((....)))...))).)))...)).))..)))....)))))	0.430 -9.50

cbriggsae

chromosome:chrV:5355096:5355172:-1

Same_strand|Intronic_coding|NM_062569|msp-49 ## Same_strand|Intronic_non-coding|NM_001027169|nhr-109 ## Opposite_strand|Intronic_coding|NM_070877|ugt-42 ## Opposite_strand|Intronic_non-coding|NM_032435|KIAA1804 ## {Repeats: no}

block4795 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.213	no	no	0.55/0.55	22/22/1.00	0.0	0.0	1	0	1	0	12	17	5arm	15	nd	0.18	2	1	1	na	na

		reads	miRBase family seed
seed	-------------UUUCGAG------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------GTTTCGAGTGTGTGTGCGCCTT----------------------------------------------------------------	22	1
cbriggsae	gccagtaaacccGTTTCGAGTGTGTGTGCGCCTTtaaccccttcgtggcgagacctcaacgatagggcgcgcttgcacgaaaagagagaaaattggcg
	**************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001095669
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047906
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047906
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033381
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001844
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007734
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033380
	------------------------------------------------------------------------------------------------------------	NM_001122840
	------------------------------------------------------------------------------------------------------------	NM_033150
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009930
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_032085
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001076831
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_053304
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_012929
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000090
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_131292
	------------------------------------------------------------------------------------------------------------	NM_001090075
	------------------------------------------------------------------------------------------------------------	NM_214509
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001081764
	------------------------------------------------------------------------------------------------------------	NM_001031818
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_152660
	------------------------------------------------------------------------------------------------------------	NM_007734
	------------------------------------------------------------------------------------------------------------	NM_000090
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009930
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000495
cbriggsae	((((((.......((((..(((((.(((((((((........((((...((....)).)))).))))))))).))))).....))))....)))))).	0.940 -31.60

cbriggsae

chromosome:chrX:836939:837036:1

Same_strand|Intronic_coding|NM_001095669|foxp2a ## Opposite_strand|Intronic_coding|NM_001122840|si:ch211-212m21.5 ## Same_strand|Intronic_non-coding|NM_152660|FAM76A ## {Repeats: no}

block3844 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.226	no	no	0.26/0.26	23/23/1.00	0.0	0.0	1	0	1	0	8	1	5arm	1	nd	0.09	1	1	1	na	na

		reads	miRBase family seed
seed	---------CUUAGAG--------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------GCTTAGAGTTTTATCATGATTTT-----------------------------------------------	23	1
cbriggsae	tccatattGCTTAGAGTTTTATCATGATTTTctgaaaaatgagtatcaattgaaagaacatggaattcgaaagttgga
	******************************************************************************
	----------------------------------------------------------------------------------------	NM_063725
	----------------------------------------------------------------------------------------	NM_063724
	----------------------------------------------------------------------------------------	NM_063620
	----------------------------------------------------------------------------------------	NM_070787
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_074696
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075512
	----------------------------------------------------------------------------------------	NM_063730
	----------------------------------------------------------------------------------------	NM_063727
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_060911
	----------------------------------------------------------------------------------------	NM_066490
cbriggsae	((((....((((.(((((((((((((((.(((........))).))))..))).......))))))))..))))))))	0.500 -12.91

cbriggsae

chromosome:chrV:13081897:13081974:-1

Opposite_strand|Intronic_coding|NM_063725|chitinase ## Same_strand|Intronic_coding|NM_074696|clec-233 ## {Repeats: no}

block906 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.835	no	no	0.63/0.63	19/19/0.00	0.0	0.0	1	0	1	0	22	6	5arm	1	nd	0.26	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------UAGCCAU------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------GTAGCCATTGCTCTCCCGC-------------------------------------------------------------------------------	19	1
cbriggsae	cgcgcagcgtcctttgattacgGTAGCCATTGCTCTCCCGCatatgtcacaatatccacattgccaatcccaaaggtgagcatcggctttgacgtggcgttcatcccggggcaggaagcg
	************************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------------	NM_006287
	----------------------------------------------------------------------------------------------------------------------------------	NM_009829
	----------------------------------------------------------------------------------------------------------------------------------	NM_001039276
	----------------------------------------------------------------------------------------------------------------------------------	NM_201578
	----------------------------------------------------------------------------------------------------------------------------------	NM_001114006
cbriggsae	(((.....(((((.((((((((..((((..(((((.((.(((.((((..........)))))))..........)).)))))..))))....)))))...)))....))))).....)))	0.640 -31.40

cbriggsae

chromosome:chrII:4387563:4387682:1

Opposite_strand|Intronic_non-coding|NM_006287|TFPI ## Opposite_strand|Intronic_coding|NM_201578|psmd12 ## {Repeats: no}

block1257 [novel_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.322	no	no	0.55/0.55	22/22/1.00	0.0	0.0	1	0	1	0	3	17	5arm	15	nd	0.18	2	1	1	na	na

		reads	miRBase family seed
seed	----UUUCGAG----------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---GTTTCGAGTGTGTGTGCGCCTT--------------------------------------------------------	22	1
cbriggsae	cccGTTTCGAGTGTGTGTGCGCCTTtaaccccttcgtggcgagacctcaacgatagggcgcgcttgcacgaagggagagga
	*********************************************************************************
cbriggsae	((..((((..(((((.(((((((((........((((...((....)).)))).))))))))).)))))...))))..)).	0.580 -28.20

cbriggsae

chromosome:chrII_random:2251743:2251823:1

{Repeats: no}

block3960 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.041	no	no	0.61/0.61	18/18/0.00	0.0	0.0	1	0	1	0	14	15	3arm	1	nd	0.17	2	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------------UUCAGAG------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------------------------------------------ATTCAGAGTGGCGCCTGC--------------	18	1
cbriggsae	gtggcgaagctcctgcagattctcgccattgtaggaggccatcgttttcaggaagagacgcttggaagaATTCAGAGTGGCGCCTGCacggttgagccaca
	*****************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087019
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075285
	---------------------------------------------------------------------------------------------------------------	NM_071395
	---------------------------------------------------------------------------------------------------------------	NM_071402
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-------------------------------------------------------	NM_065376
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-------------------------------------------------------	NM_068110
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001123561
cbriggsae	(((((..((((..(((((.....(((((((....(((.(((.((((((......))))))..))).....)))..))))))).))))).))))..))))).	0.880 -36.60

cbriggsae

chromosome:chrV:1552667:1552767:1

Same_strand|Intronic_non-coding|NM_001087019|nr2f2 ## Same_strand|Intronic_coding|NM_075285|nhr-243 ## Opposite_strand|Intronic_coding|NM_071395|srh-247 ## {Repeats: no}

block2869 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.050	no	no	0.48/0.48	23/23/1.00	0.0	0.0	1	0	1	0	8	13	5arm	1	nd	0.39	3	1	1	na	na

		reads	miRBase family seed
seed	---------CGAUCAA----------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------TCGATCAATTGGAATGTTGGCCC-------------------------------------------------------	23	1
cbriggsae	gcgtggctTCGATCAATTGGAATGTTGGCCCaagatgaatgtatctggtacatggtcccgttggcgttcgaagatggaggcgttgc
	**************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075117
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061879
	------------------------------------------------------------------------------------------------	NM_067650
cbriggsae	(((..(((((.(((..((.((((((..((....(((..((((((...)))))).)))..))..)))))).))))).)))))..)))	0.990 -29.10

cbriggsae

chromosome:chrIV_random:168628:168713:-1

Same_strand|Intronic_non-coding|NM_075117|Y59A8B.22 ## Opposite_strand|Intronic_non-coding|NM_067650|Y104H12D.3 ## {Repeats: no}

block990 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.528	no	no	0.45/0.45	22/22/1.00	0.0	0.0	1	0	1	0	16	-2	5arm_loop	5	nd	0.45	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------AAUAUCG--------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------GAATATCGAAACAACTGCCTCG------------------------------------------	22	1
cbriggsae	ccgtcccccgaagtccGAATATCGAAACAACTGCCTCGacgggcctggtcttctcgaagcactcggttcttctctagcga
	********************************************************************************
	------------------------------------------------------------------------------------------	NM_001047975
	------------------------------------------------------------------------------------------	NM_001047939
	------------------------------------------------------------------------------------------	NM_001047939
	------------------------------------------------------------------------------------------	NM_127141
	------------------------------------------------------------------------------------------	NM_001003414
	------------------------------------------------------------------------------------------	NM_182152
	------------------------------------------------------------------------------------------	NM_063631
	------------------------------------------------------------------------------------------	NM_063632
	------------------------------------------------------------------------------------------	NM_063623
	------------------------------------------------------------------------------------------	NM_063620
	------------------------------------------------------------------------------------------	NM_063619
	------------------------------------------------------------------------------------------	NM_063628
	------------------------------------------------------------------------------------------	NM_063626
	------------------------------------------------------------------------------------------	NM_063626
	------------------------------------------------------------------------------------------	NM_063625
	------------------------------------------------------------------------------------------	NM_064259
	------------------------------------------------------------------------------------------	NM_063630
	------------------------------------------------------------------------------------------	NM_063630
	------------------------------------------------------------------------------------------	NM_074369
	------------------------------------------------------------------------------------------	NM_063617
	------------------------------------------------------------------------------------------	NM_062054
	------------------------------------------------------------------------------------------	NM_074369
	------------------------------------------------------------------------------------------	NM_063618
	------------------------------------------------------------------------------------------	NM_068455
	------------------------------------------------------------------------------------------	NM_068454
cbriggsae	.(((.....((((.((((...((((....(((((((....))))..)))....)))).....))))..))))....))).	0.980 -18.10

cbriggsae

chromosome:chrII:8214659:8214738:1

Opposite_strand|Intronic_coding|NM_001047975|LOC683871 ## Opposite_strand|Intronic_non-coding|NM_127141|SQN ## {Repeats: no}

block2915 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.798	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	8	21	3arm	1	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------------CCAGCAG-------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------------------------------TCCAGCAGGCGTGTTAATC--------	19	1
cbriggsae	tcagtctgtactgcgtaggtttttctcaacaatgtctaaaattctccgtttcaagttttccatttcttccagaattttccaatttcagggaTCCAGCAGGCGTGTTAATCagaattga
	**********************************************************************************************************************
cbriggsae	((((((((.((.((((..(((..((((...(((....((((((((.........................))))))))...)))...))))...)))..))))))....)))).))))	0.880 -17.61

cbriggsae

chromosome:chrIV_random:677608:677725:1

{Repeats: no}

block593 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.193	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	6	23	3arm	3	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AACCAUC-------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------GAACCATCGTGTTGGGACTAC------	21	1
cbriggsae	ttggggtcatctcggcaataaaggatcctaatttgtcaatgtttttgtaaaccgcaacaagacacttaaatccagaGAACCATCGTGTTGGGACTACatccaa
	*******************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075282
	-----------------------------------------------------------------------------------------------------------------	NM_011794
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062387
cbriggsae	.((((((..((((((((.....((.((((.(((((....(((((((((.....))))..)))))..)))))..)).)).))....))))))))..)).)))).	0.750 -21.50

cbriggsae

chromosome:chrII:2335847:2335949:-1

Same_strand|Intronic_non-coding|NM_075282|wrs-1 ## Opposite_strand|Intronic_non-coding|NM_011794|Bpnt1 ## Same_strand|Intronic_coding|NM_062387|W06B4.3 ## {Repeats: no}

block2042 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.771	no	no	0.35/0.35	20/20/1.00	0.0	0.0	1	0	1	0	13	8	5arm	1	nd	0.30	5	1	1	na	na

		reads	miRBase family seed
seed	--------------UGUCCAG-------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------TTGTCCAGTCATAGTTATAC-------------------------------------------------------------------------	20	1
cbriggsae	gtttcggtgttagTTGTCCAGTCATAGTTATACacaaaataaataaaaaaaacggtaaacacataatattttcgaattgtgactttcttttcggtcagtactggaa
	**********************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105717
	--------------------------------------------------------------------------------------------------------------------	NM_198022
cbriggsae	.((((((((....(((.((((((((((((......((((((.........................))))))..))))))))))........)).)))))))))))	0.830 -14.41

cbriggsae

chromosome:chrIV:3154039:3154144:-1

Same_strand|Intronic_non-coding|NM_001105717|Dpysl2 ## Opposite_strand|Intronic_non-coding|NM_198022|Tnrc6c ## {Repeats: no}

block3111 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.335	no	no	0.24/0.24	25/25/0.00	0.0	0.0	1	0	1	0	11	13	3arm	3	9	0.24	1	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------GUAACAU----------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------------TGTAACATTGTGATGAAGATTTATT-----------	25	1
cbriggsae	acttactatgttgttagtcattttcattatgttttaagactaggtgcagtttttggtatttttacaggTGTAACATTGTGATGAAGATTTATTacagggtatgt
	********************************************************************************************************
	>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>+++++++++++++++++++++++++++++++++++++++++++++++++	NM_001097928
cbriggsae	((.((((.(((.((.((((.((.((((.(((((.((.....((((((........)))))).......)).))))).)))).)).)))).)).))).)))).))	0.450 -17.90

cbriggsae

chromosome:chrUn:4218858:4218961:-1

Same_strand|Intronic_non-coding|NM_001097928|LOC100049086 ## {Repeats: no}

block2162 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.134	no	no	0.37/0.37	19/19/0.00	0.0	0.0	1	0	1	0	23	10	3arm	1	nd	0.26	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------UUUUAGG----------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------------------ATTTTAGGCACATGTGAAG-----------------------	19	1
cbriggsae	tatgaaaaagttgccaagttaagcgttgttcaacccgtggcgatgaatgggttggtagtggataattatgaaacATTTTAGGCACATGTGAAGaaaaattaaaggtactgtacata
	********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007735
	------------------------------------------------------------------------------------------------------------------------------	NM_001003090
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_063086
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003090
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000393
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062161
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_053304
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031362
	------------------------------------------------------------------------------------------------------------------------------	NM_000088
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_201478
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000088
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000091
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001093327
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001097192
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214509
	------------------------------------------------------------------------------------------------------------------------------	NM_174520
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001095759
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105289
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011005
	------------------------------------------------------------------------------------------------------------------------------	NM_001011005
	------------------------------------------------------------------------------------------------------------------------------	NM_001087352
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090075
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_203889
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_027770
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064264
	------------------------------------------------------------------------------------------------------------------------------	NM_033150
	------------------------------------------------------------------------------------------------------------------------------	NM_131292
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079992
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_028266
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214466
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031365
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067504
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007737
	------------------------------------------------------------------------------------------------------------------------------	NM_001844
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000093
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001037865
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122918
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_171020
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001123230
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001037763
cbriggsae	((((....((.((((...((((...((.((((...((((((...(((((..((.(((((.....))))).)).)))))...)).)))))))).))...)))).))))))...))))	0.790 -23.40

cbriggsae

chromosome:chrIV:7439847:7439962:-1

Same_strand|Intronic_coding|NM_007735|Col4a4 ## Opposite_strand|Intronic_coding|NM_001003090|COL1A1 ## Same_strand|Intronic_non-coding|NM_171020|dyf-13 ## {Repeats: no}

block3823 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.166	no	no	0.50/0.63	21/27/0.90	0.0	0.3	7	0	1	0	15	-8	3arm	20	nd	0.52	7	10	1	na	na

		reads	miRBase family seed
seed	-------------------------------------CCUUAGG------------------------------	7	novel
seed	---------------------------------------------CGCUGGU----------------------	1	novel
seed	-----------------------------------------AGGUCGC--------------------------	1	novel
seed	----------------------------------------UAGGUCG---------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------TCCTTAGGTCGCTGGTTCGAATC---------------	23	5
	------------------------------------TCCTTAGGTCGCTGGTTCGAAT----------------	22	2
	---------------------------------------TTAGGTCGCTGGTTCGAATCCG-------------	22	1
	----------------------------------------TAGGTCGCTGGTTCGAATCCG-------------	21	1
	--------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA---	27	1
cbriggsae	agttggtagagcggaggactgtagagtcagtgggtaTCCTTAGGTCGCTGGTTCGAATCcggctcgacggattt
	**************************************************************************
	------------------------------------------------------------------------------------	NM_001126434
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001022613
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028773
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027854
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_074150
	------------------------------------------------------------------------------------	NM_001113262
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_026039
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_175692
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_136816
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_003299
	------------------------------------------------------------------------------------	NM_212567
	------------------------------------------------------------------------------------	NM_001113262
	------------------------------------------------------------------------------------	NM_001113262
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_074226
cbriggsae	((((.((.((((...(((.....((..((((((...........))))))..))...))).)))).)).)))).	0.990 -21.90

cbriggsae

chromosome:chrV:11952883:11952956:-1

Opposite_strand|Intronic_non-coding|NM_001126434|LOC570148 ## Same_strand|Intronic_coding|NM_001022613|SPBC215.13 ## Opposite_strand|Intronic_coding|NM_001113262|Fib-h ## Same_strand|Intronic_non-coding|NM_026039|Med18 ## {Repeats: no}

block2925 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.696	no	no	0.26/0.26	27/27/0.00	0.0	0.0	1	0	1	0	19	7	5arm	2	nd	0.44	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------UUUUAUA----------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------GTTTTATAATAATTGGGATAGTTGTAG---------------------------------------------------------------	27	1
cbriggsae	ccagttttttcttagtcttGTTTTATAATAATTGGGATAGTTGTAGtggagctataaatacagctttaactaatcgtctaggtgattatttcatatttgtcttttttgg
	*************************************************************************************************************
cbriggsae	((((........(((...((....(((((.((..(((..((((...(((((((........)))))))..))))..)))..)).)))))..))...)))......))))	0.440 -15.34

cbriggsae

chromosome:chrM:1414:1522:-1

{Repeats: no}

block167 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.554	no	no	0.39/0.39	18/18/0.00	0.0	0.0	1	0	1	0	2	25	3arm	1	nd	0.22	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------------------------GCUGCUA------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------------------------------------TGCTGCTAATTTGGTTTC--	18	1
cbriggsae	ttgaaaaaataaacacggaagacactcgtaaataccaaaaaggttctctgtttcaactcctaattatcatcaagccttttttaatttatcacTGCTGCTAATTTGGTTTCaa
	****************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001032899
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001107961
cbriggsae	.(((((...((((...((.((.((...((((((...(((((((((...((.................))...)))))))))..))))))...)))).))..)))).))))).	0.930 -12.53

cbriggsae

chromosome:chrI:8686991:8687102:-1

Same_strand|Intronic_non-coding|NM_001032899|SLC15A1 ## {Repeats: no}

block1539 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.334	no	no	0.35/0.35	23/23/1.00	0.0	0.0	1	0	1	0	3	4	3arm	2	nd	0.39	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------GAUAUGU------------------	1	miR-50/62/90
		len	cloning frequencies
			AF16
	-----------------------------------TGATATGTAGATAATGCACCAAC---	23	1
cbriggsae	ctctttgtagcagtcaatgcacacaattaactgggTGATATGTAGATAATGCACCAACgag
	*************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028998
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028999
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029004
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029003
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029002
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029001
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039389
	-----------------------------------------------------------------------	NM_135472
	-----------------------------------------------------------------------	NM_164874
	-----------------------------------------------------------------------	NM_205951
	-----------------------------------------------------------------------	NM_205952
	-----------------------------------------------------------------------	NM_205953
	-----------------------------------------------------------------------	NM_001092606
	-----------------------------------------------------------------------	NM_001004296
	-----------------------------------------------------------------------	NM_064155
	-----------------------------------------------------------------------	NM_001122952
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075505
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_028763
	-----------------------------------------------------------------------	NM_065922
	-----------------------------------------------------------------------	NM_010905
	-----------------------------------------------------------------------	NM_065923
	-----------------------------------------------------------------------	NM_068002
	-----------------------------------------------------------------------	NM_067755
	-----------------------------------------------------------------------	NM_067378
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001031045
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001102968
cbriggsae	(((.(((..((((((.((((((.((......)).))).)))...)))..)))..))).)))	0.450 -10.80

cbriggsae

chromosome:chrIII:11509518:11509578:-1

Same_strand|Intronic_non-coding|NM_001028998|unc-62 ## Opposite_strand|Intronic_non-coding|NM_135472|nAcRalpha-30D ## Opposite_strand|Intronic_coding|NM_001004296|rdx ## {Repeats: no}

block386 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.522	no	no	0.53/0.53	19/19/0.00	0.0	0.0	2	0	1	0	16	12	5arm	1	nd	0.26	2	2	1	na	na

		reads	miRBase family seed
seed	-----------------AAUCCGG----------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	----------------GAATCCGGGGATCTTCTGT-----------------------------------------------------------------	19	2
cbriggsae	gtccaccgtcaattctGAATCCGGGGATCTTCTGTcttcagcgtcgatgaatcgatttaggagagattttcgagagcttcctgtcttcttggtcatggag
	****************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001106587
	--------------------------------------------------------------------------------------------------------------	NM_061648
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_060440
	--------------------------------------------------------------------------------------------------------------	NM_059352
	--------------------------------------------------------------------------------------------------------------	NM_059351
cbriggsae	.((((...((((....(((..((((((.((..(((((((...(((((....)))))...)))))......))..)).))))))..)))))))...)))).	0.410 -23.20

cbriggsae

chromosome:chrI:9023812:9023911:1

Same_strand|Intronic_non-coding|NM_001106587|Tnpo3 ## Opposite_strand|Intronic_coding|NM_061648|sdz-18 ## Same_strand|Intronic_coding|NM_060440|srt-62 ## {Repeats: no}

block362 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.638	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	2	11	3arm	1	nd	0.30	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------AUCCUUC--------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------TATCCTTCTCGAGCAGTCAG--	20	1
cbriggsae	ctttttctgtttcagtagttagtaaaaaaccacgacataaagttagccatatTATCCTTCTCGAGCAGTCAGag
	**************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008855
	------------------------------------------------------------------------------------	NM_176035
	------------------------------------------------------------------------------------	NM_205985
	------------------------------------------------------------------------------------	NM_205986
	------------------------------------------------------------------------------------	NM_001011629
	------------------------------------------------------------------------------------	NM_102365
	------------------------------------------------------------------------------------	NM_001084127
	------------------------------------------------------------------------------------	NM_001009899
cbriggsae	((((..((((((.((.((.(((((.......((........))......)))))..)).)).))))))..))))	0.940 -9.12

cbriggsae

chromosome:chrI:8208731:8208804:1

Same_strand|Intronic_non-coding|NM_008855|Prkcb1 ## Opposite_strand|Intronic_coding|NM_176035|nAcRalpha-34E ## Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## {Repeats: no}

block3744 [novel_cloningOK_Multihit_shortStem_5varHIGH_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.404	no	no	0.50/0.63	20/27/0.93	4.8	4.1	10	0	1	0	0	-1	3arm	20	nd	0.35	3	14	1	na	na

		reads	miRBase family seed
seed	------------------------------------CCUUAGG----------------------------	7	novel
seed	----------------------------------------------------CGAAUCC------------	3	novel
seed	---------------------------------------UAGGUCG-------------------------	1	novel
seed	----------------------------------------AGGUCGC------------------------	1	novel
seed	--------------------------------------------CGCUGGU--------------------	1	novel
seed	-------------------------------------------------GUUCGAA---------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------TCCTTAGGTCGCTGGTTCGAATC-------------	23	5
	---------------------------------------------------TCGAATCCGGCTCGACGGAA	20	3
	-----------------------------------TCCTTAGGTCGCTGGTTCGAAT--------------	22	2
	---------------------------------------TAGGTCGCTGGTTCGAATCCG-----------	21	1
	--------------------------------------TTAGGTCGCTGGTTCGAATCCG-----------	22	1
	------------------------------------------------GGTTCGAATCCGGCTCGACGGAA	23	1
	-------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA-	27	1
cbriggsae	ttggtagagcggaggactgtagcagtcagtggttaTCCTTAGGTCGCTGGTTCGAATCCGGCTCGACGGAA
	***********************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_073462
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070729
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007823
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_133969
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001114375
	---------------------------------------------------------------------------------	NM_134696
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001112929
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001112929
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_079237
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_079859
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039441
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_057559
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001017348
	---------------------------------------------------------------------------------	NM_078262
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_177732
	---------------------------------------------------------------------------------	NM_001085355
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_073446
	---------------------------------------------------------------------------------	NM_001024358
cbriggsae	((.((.((((((((((((..(((..((...((....))...))..))))))))...)))).))).)).)).	0.910 -20.40

cbriggsae

chromosome:chrV:7237240:7237310:-1

Same_strand|Intronic_coding|NM_073462|clec-223 ## Opposite_strand|Intronic_coding|NM_134696|CG2839 ## Same_strand|Intronic_non-coding|NM_001112929|LOC100127559 ## Opposite_strand|Intronic_non-coding|NM_078262|let-2 ## {Repeats: no}

block4825 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.791	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	34	5	5arm	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------AUUUUGC----------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------CATTTTGCATCCGGCGAAC-----------------------------------------------------------------	19	1
cbriggsae	tgtgtgcattgacaatcccgaggacaaccatgccCATTTTGCATCCGGCGAACacacagaagagagaatggacgtacacgccggagaagttggctgctgttcgattggagacgaatat
	**********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047939
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001013793
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001094367
	--------------------------------------------------------------------------------------------------------------------------------	NM_001053012
	--------------------------------------------------------------------------------------------------------------------------------	NM_001073374
cbriggsae	.((((...((..(((((....(((((..((.(((.(((((...(((((((...((.((..........))...))...)))))))))))).))))).))))))))))..))...))))	0.640 -28.20

cbriggsae

chromosome:chrX:2219241:2219358:1

Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_coding|NM_001047939|LOC499407 ## Opposite_strand|Intronic_coding|NM_001053012|Os02g0258900 ## {Repeats: no}

block157 [novel_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.019	no	no	0.29/0.29	21/21/1.00	0.0	0.0	1	0	1	0	19	15	3arm	12	nd	0.43	5	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AUAUGAU--------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------TATATGATTTTTGGAACCTAG-------------------	21	1
cbriggsae	tagctaagatcaaagtgtagtatctgttcttatcgtattaacctacggtatacactcgaatgagtgtaataaaggtTATATGATTTTTGGAACCTAGgaaagactcggggcttgct
	********************************************************************************************************************
	------------------------------------------------------------------------------------------------------------------------------	NM_008855
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_176035
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205985
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205986
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_102365
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001084127
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001009899
cbriggsae	.(((.(((.((..(((.........(((((.((((((.((((((...((.(((((((....)))))))))..))))))))))))....))))).........)))..)).))))))	0.900 -29.47

cbriggsae

chromosome:chrI:8188086:8188201:-1

Opposite_strand|Intronic_non-coding|NM_008855|Prkcb1 ## Same_strand|Intronic_coding|NM_176035|nAcRalpha-34E ## Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## {Repeats: no}

block3028 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.413	no	no	0.48/0.48	23/23/1.00	0.0	0.0	3	0	1	0	43	-1	5arm_loop	2	nd	0.43	3	3	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------UUUUUCG-------------------------------------------------------------------	3	novel
		len	cloning frequencies
			AF16
	-------------------------------------------GTTTTTCGATGGCTTCCGAATCC----------------------------------------------------	23	3
cbriggsae	ggacttctttagatgaaatcgagcattcagaatccttctccacGTTTTTCGATGGCTTCCGAATCCttttagatgacgtggctgatgacgtggatggttcagaatcttctataagttt
	**********************************************************************************************************************
cbriggsae	.(((((...((((........((.((((.(((.((...((((((((..((...((((..((.(((......)))..)).)))))).)))))))).))))).)))))))))).))))).	0.530 -26.20

cbriggsae

chromosome:chrUn:1740549:1740666:-1

{Repeats: no}

block595 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.144	no	no	0.50/0.50	22/22/1.00	0.0	0.0	1	0	1	0	2	13	3arm	1	nd	0.36	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------UGAUCCU----------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------------------ATGATCCTGGGTAGCTGGTTTG--	22	1
cbriggsae	actctccagaaagccatacgaatcaaacattctgccgaacatcacaaccttcagagtatcggctccATGATCCTGGGTAGCTGGTTTGag
	******************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075282
	----------------------------------------------------------------------------------------------------	NM_011794
cbriggsae	.(((.((((...(((....((.(((........(((((...((..........))...)))))....)))))...)))..))))...)))	0.410 -19.60

cbriggsae

chromosome:chrII:2351214:2351303:-1

Same_strand|Intronic_non-coding|NM_075282|wrs-1 ## Opposite_strand|Intronic_non-coding|NM_011794|Bpnt1 ## {Repeats: no}

block2550 [novel_cloningOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.939	no	no	0.43/0.43	21/21/1.00	0.0	0.0	9	0	1	0	17	5	3arm	1	nd	0.38	4	9	1	na	na

		reads	miRBase family seed
seed	---------------------------------------CGAUAAG------------------------------	9	novel
		len	cloning frequencies
			AF16
	--------------------------------------TCGATAAGTATCCAGTCAGTG-----------------	21	9
cbriggsae	gcttgttctgaaacgtatttttgaaatgtttttgctaaTCGATAAGTATCCAGTCAGTGtccattttaattgcagc
	****************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_069173
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028426
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028425
cbriggsae	((.(((.((((...((((((((((...((....))...)))).))))))....))))..............)))))	0.850 -8.16

cbriggsae

chromosome:chrIV:4024558:4024633:1

Same_strand|Intronic_coding|NM_069173|Y73F4A.1 ## {Repeats: no}

block1980 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.172	no	no	0.42/0.42	19/19/0.00	0.0	0.0	2	0	1	0	5	9	3arm	1	nd	0.37	4	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------AACUAUU----------------	2	novel
		len	cloning frequencies
			AF16
	----------------------------------------------TAACTATTAAGCCCAGCTG-----	19	2
cbriggsae	tatttcaaaatgtgcttattaatttcaacttgaaaatgagagctatTAACTATTAAGCCCAGCTGagata
	**********************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070351
	--------------------------------------------------------------------------------	NM_001090906
	--------------------------------------------------------------------------------	NM_182271
	--------------------------------------------------------------------------------	NM_001102902
	--------------------------------------------------------------------------------	NM_070367
cbriggsae	(((((((...((.((((((((((.....(((......)))....)))))....))))).))..)))))))	0.480 -10.40

cbriggsae

chromosome:chrIV:2070542:2070611:-1

Same_strand|Intronic_non-coding|NM_070351|LLC1.2 ## Opposite_strand|Intronic_non-coding|NM_001090906|EEF1D ## Opposite_strand|Intronic_coding|NM_182271|K02E7.4 ## {Repeats: no}

block701 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.365	no	no	0.60/0.60	20/20/1.00	0.0	0.0	1	0	1	0	12	11	5arm	1	nd	0.15	1	1	1	na	na

		reads	miRBase family seed
seed	-------------UCUCGGC------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------ATCTCGGCCAGCTCAGTTGG------------------------------------------------------------------	20	1
cbriggsae	gctctcttctgcATCTCGGCCAGCTCAGTTGGtgtcctccgagtaacatctcgaacagaattcaattgaacctggacgtttggataatcatcactgct
	**************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007734
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007734
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033380
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_130386
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080630
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001846
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009926
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_130449
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033381
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007730
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001856
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001844
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_027770
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033381
	------------------------------------------------------------------------------------------------------------	NM_009930
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_016919
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080799
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003090
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003187
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033150
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087789
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011005
	------------------------------------------------------------------------------------------------------------	NM_001006951
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_203889
	------------------------------------------------------------------------------------------------------------	NM_134696
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_204790
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001006951
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001081764
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087789
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087791
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001014971
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001003187
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214509
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214510
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001014971
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001033832
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079401
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205305
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_174520
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105289
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105288
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105433
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001088739
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_204790
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001033832
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039599
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001088739
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_174520
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080805
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080810
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001845
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_015734
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_015734
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_015734
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007743
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080809
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080803
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079992
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080801
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_025685
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_213264
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001108870
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001106858
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007731
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001113224
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001844
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000088
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033380
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007742
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_152890
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033150
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001101980
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007734
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007735
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134452
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007740
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009929
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080815
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_201478
	------------------------------------------------------------------------------------------------------------	NM_201478
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_131292
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_005203
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007729
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007729
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_015719
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_147881
	------------------------------------------------------------------------------------------------------------	NM_058794
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182968
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_053356
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001130103
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001854
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080680
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080813
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009929
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080806
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080681
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080630
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080802
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080804
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001109991
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_172604
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083844
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001109172
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080811
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080679
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_032085
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007733
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080800
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199214
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_212528
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_212528
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080808
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007742
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080814
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007737
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080812
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080807
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007735
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080798
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000495
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000495
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000494
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000092
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000393
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000090
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000093
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000093
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000089
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122918
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122918
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001123230
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001126964
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001001135
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001130548
	------------------------------------------------------------------------------------------------------------	NM_063982
cbriggsae	((..........((((((.((((.((((((((..((...((((......))))....))..))))))))..)))).))...))))..........)).	0.450 -21.25

cbriggsae

chromosome:chrII:7158196:7158293:-1

Same_strand|Intronic_coding|NM_007734|Col4a3 ## Opposite_strand|Intronic_coding|NM_009930|Col3a1 ## Same_strand|Intronic_non-coding|NM_001079401|col24a1 ## {Repeats: no}

block4697 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.618	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	6	8	3arm	22	nd	0.29	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------UUGUUGU-------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------CTTGTTGTCAGCTGGGACCTT------	21	1
cbriggsae	gtcctcttggttctgtgttctggcttcgaactgttggccatcaccttggagaatCTTGTTGTCAGCTGGGACCTTcttggc
	*********************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_029869
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020252
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_133906
	-------------------------------------------------------------------------------------------	NM_068376
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020297
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_027016
	-------------------------------------------------------------------------------------------	NM_079863
	-------------------------------------------------------------------------------------------	NM_170535
	-------------------------------------------------------------------------------------------	NM_170536
	-------------------------------------------------------------------------------------------	NM_078585
	-------------------------------------------------------------------------------------------	NM_167331
	-------------------------------------------------------------------------------------------	NM_167332
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087595
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_003262
	-------------------------------------------------------------------------------------------	NM_078127
	-------------------------------------------------------------------------------------------	NM_078127
	-------------------------------------------------------------------------------------------	NM_078127
cbriggsae	..((....(((((((....(((((..(((...(((..(((......)))..))).)))..))))).))))))).....)).	0.590 -17.90

cbriggsae

chromosome:chrX:17979583:17979663:-1

block1715 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.680	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	0	28	5arm	1	nd	0.40	4	1	1	na	na

		reads	miRBase family seed
seed	-ACUGUGA------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	GACTGTGAGCAGTATTGGAG------------------------------------------------------------------------------	20	1
cbriggsae	GACTGTGAGCAGTATTGGAGagaaagggagtgatttatcgacggggctgaatgttggatccgctggctgattgtggtaattgtcctccactgtgaagt
	**************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087791
	------------------------------------------------------------------------------------------------------------	NM_001047975
	------------------------------------------------------------------------------------------------------------	NM_001858
	------------------------------------------------------------------------------------------------------------	NM_213264
	------------------------------------------------------------------------------------------------------------	NM_131292
	------------------------------------------------------------------------------------------------------------	NM_080680
	------------------------------------------------------------------------------------------------------------	NM_001845
	------------------------------------------------------------------------------------------------------------	NM_021881
	------------------------------------------------------------------------------------------------------------	NM_007739
	------------------------------------------------------------------------------------------------------------	NM_181277
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083336
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_176995
	------------------------------------------------------------------------------------------------------------	NM_001006951
	------------------------------------------------------------------------------------------------------------	NM_001081764
	------------------------------------------------------------------------------------------------------------	NM_001046199
	------------------------------------------------------------------------------------------------------------	NM_001005153
	------------------------------------------------------------------------------------------------------------	NM_001002980
	------------------------------------------------------------------------------------------------------------	NM_001014971
	------------------------------------------------------------------------------------------------------------	NM_204790
	------------------------------------------------------------------------------------------------------------	NM_001082666
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_079524
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_206442
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_206443
	------------------------------------------------------------------------------------------------------------	NM_212528
	------------------------------------------------------------------------------------------------------------	NM_201478
	------------------------------------------------------------------------------------------------------------	NM_182968
	------------------------------------------------------------------------------------------------------------	NM_033150
	------------------------------------------------------------------------------------------------------------	NM_080629
	------------------------------------------------------------------------------------------------------------	NM_000089
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_005381
	------------------------------------------------------------------------------------------------------------	NM_001107100
	------------------------------------------------------------------------------------------------------------	NM_000393
	------------------------------------------------------------------------------------------------------------	NM_080681
	------------------------------------------------------------------------------------------------------------	NM_005718
	------------------------------------------------------------------------------------------------------------	NM_004845
	------------------------------------------------------------------------------------------------------------	NM_080680
	------------------------------------------------------------------------------------------------------------	NM_001844
	------------------------------------------------------------------------------------------------------------	NM_080679
	------------------------------------------------------------------------------------------------------------	NM_001854
	------------------------------------------------------------------------------------------------------------	NM_212579
	------------------------------------------------------------------------------------------------------------	NM_080630
	------------------------------------------------------------------------------------------------------------	NM_007736
	------------------------------------------------------------------------------------------------------------	NM_001083844
	------------------------------------------------------------------------------------------------------------	NM_007738
	------------------------------------------------------------------------------------------------------------	NM_031366
	------------------------------------------------------------------------------------------------------------	NM_199214
	------------------------------------------------------------------------------------------------------------	NM_009926
	------------------------------------------------------------------------------------------------------------	NM_031362
	------------------------------------------------------------------------------------------------------------	NM_031365
	------------------------------------------------------------------------------------------------------------	NM_134452
	------------------------------------------------------------------------------------------------------------	NM_000092
	------------------------------------------------------------------------------------------------------------	NM_000091
	------------------------------------------------------------------------------------------------------------	NM_001024960
	------------------------------------------------------------------------------------------------------------	NM_001024959
	------------------------------------------------------------------------------------------------------------	NM_078485
	------------------------------------------------------------------------------------------------------------	NM_001851
	------------------------------------------------------------------------------------------------------------	NM_001079992
	------------------------------------------------------------------------------------------------------------	NM_001130548
	------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_001026003
	------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_001026002
cbriggsae	.(((....(((((...((((.((........((((..(((.(((..((.......))..))).)))..))))..........)))))))))))..)))	0.640 -19.77

cbriggsae

chromosome:chrIII:6663836:6663933:1

block2942 [novel_cloningOK_5varHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.152	no	no	0.22/0.30	18/27/0.60	2.2	2.4	5	0	1	0	7	0	3arm	2	nd	0.18	2	5	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------GUAAUUA------------------------	3	novel
seed	-------------------------------------------------------AUUAUAG---------------------	1	novel
seed	--------------------------------------------------UUGUAAU--------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------------------------TGTAATTATAGGGTTTTTAGTAG---------	23	1
	-------------------------------------------------CTTGTAATTATAGGGTTTTTAGTAGCT-------	27	1
	------------------------------------------------------AATTATAGGGTTTTTAGTAGCT-------	22	1
	---------------------------------------------------TGTAATTATAGGGTTTTT--------------	18	1
	---------------------------------------------------TGTAATTATAGGGTTTTTAGTA----------	22	1
cbriggsae	ttgatgatcttactaatgtagctatgatagtttaattaagaatatataaCTTGTAATTATAGGGTTTTTAGTAGCTttgttag
	***********************************************************************************
cbriggsae	.((((((..(((((((...((((...((((((....((((.........)))).))))))..)))).)))))))..)))))).	0.940 -13.90

cbriggsae

chromosome:chrM:7359:7441:-1

{Repeats: no}

block3418 [novel_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.477	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	29	-2	5arm_loop	3	nd	0.14	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------GUGUUGG---------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------AGTGTTGGCATTTTTCGTTGT--------------------------------------------------------------	21	1
cbriggsae	ctgggttttgagcagcccgcatctcattcAGTGTTGGCATTTTTCGTTGTgaagcaaatgaattgacaggtgccggcggagcagaaatttgatgagaagagctggaccacgg
	****************************************************************************************************************
cbriggsae	(((((((.....((((.....(((((.(((((((((((((((((((((........)))))).....)))))))))))..........)))))))))...)))))))).)))	0.520 -29.30

cbriggsae

chromosome:chrUn:2251955:2252066:1

{Repeats: no}

block826 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.736	no	no	0.54/0.54	26/26/0.00	0.0	0.0	1	0	1	0	8	5	5arm	1	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	---------AAGACCG----------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------GAAGACCGGATAGCCTTTGGACAGGT----------------------------------------------	26	1
cbriggsae	tcaattttGAAGACCGGATAGCCTTTGGACAGGTcgtgggacttcgcgacagccgtcgagcctttttttgctggaattga
	********************************************************************************
	------------------------------------------------------------------------------------------	NM_001030387
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062091
cbriggsae	(((((((...((...(((.((.((((((....(((((((....)))))))..)))..))).)).)))...)).)))))))	0.610 -18.00

cbriggsae

chromosome:chrII:13127444:13127523:-1

Opposite_strand|Intronic_non-coding|NM_001030387|ARIH1 ## Same_strand|Intronic_coding|NM_062091|F02E11.2 ## {Repeats: no}

block318 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.162	no	no	0.32/0.32	22/22/1.00	0.0	0.0	1	0	1	0	14	8	5arm	1	nd	0.27	4	1	1	na	na

		reads	miRBase family seed
seed	---------------UAACAUG----------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------ATAACATGATGTATGGAAGGAT--------------------------------------------------------	22	1
cbriggsae	gagatcctttaattATAACATGATGTATGGAAGGATaaataacagatggtgaatgtgattcgaataaattatgttacaatatataggttttg
	********************************************************************************************
	------------------------------------------------------------------------------------------------------	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001075022
	------------------------------------------------------------------------------------------------------	NM_205107
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033488
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033489
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033486
	------------------------------------------------------------------------------------------------------	NM_001130548
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033492
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_024011
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033493
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033529
	------------------------------------------------------------------------------------------------------	NM_031809
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033487
	------------------------------------------------------------------------------------------------------	NM_214466
	------------------------------------------------------------------------------------------------------	NM_152888
	------------------------------------------------------------------------------------------------------	NM_007737
cbriggsae	((((.(((.(((((.(((((((((.(((....((((.....(((.........))).))))..))).))))))))).))).)).))))))).	0.640 -14.30

cbriggsae

chromosome:chrI:5101184:5101275:1

Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_coding|NM_001075022|Os11g0689400 ## Opposite_strand|Intronic_coding|NM_205107|COL6A1 ## {Repeats: no}

block1564 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.039	no	no	0.44/0.44	25/25/0.00	0.0	0.0	1	0	1	0	3	6	3arm	1	nd	0.20	2	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------UUUUUCU--------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------GTTTTTCTGGCTTTAGCCTTTGAGG---	25	1
cbriggsae	tggctcacggggttttttggtttcagtaaatagaggaacatttttcttcGTTTTTCTGGCTTTAGCCTTTGAGGcgc
	*****************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_184109
	---------------------------------------------------------------------------------------	NM_013720
	---------------------------------------------------------------------------------------	NM_001085471
	---------------------------------------------------------------------------------------	NM_204577
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061965
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075282
	---------------------------------------------------------------------------------------	NM_005197
	---------------------------------------------------------------------------------------	NM_001107146
	---------------------------------------------------------------------------------------	NM_001022613
	---------------------------------------------------------------------------------------	NM_067668
	---------------------------------------------------------------------------------------	NM_001054815
	---------------------------------------------------------------------------------------	NM_001013538
	---------------------------------------------------------------------------------------	NM_028128
	---------------------------------------------------------------------------------------	NM_067174
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008425
	---------------------------------------------------------------------------------------	NM_000690
cbriggsae	((.((((.((((((....(((..(((.(((..((((((.....))))))...)))))))))..)))))))))).)).	1.000 -20.60

cbriggsae

chromosome:chrIII:12745900:12745976:-1

Same_strand|Intronic_coding|NM_184109|Rtl1 ## Opposite_strand|Intronic_non-coding|NM_013720|Mga ## Same_strand|Intronic_non-coding|NM_061965|F08D12.1 ## Opposite_strand|Intronic_coding|NM_001107146|Rfc5 ## {Repeats: no}

block2545 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.973	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	6	2	5arm	1	nd	0.47	4	1	1	na	na

		reads	miRBase family seed
seed	-------GAUUGUC--------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------TGATTGTCCTTCGGCTTGG---------------------------------------------	19	1
cbriggsae	gcttaaTGATTGTCCTTCGGCTTGGaatcgaaactttgcaagtgtgtattgccgtaaaacctaaattagg
	**********************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_069173
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067472
	--------------------------------------------------------------------------------	NM_069190
cbriggsae	.((((((....((....(((((((.((........)).))).........))))....))....))))))	0.590 -8.40

cbriggsae

chromosome:chrIV:3874436:3874505:1

Same_strand|Intronic_coding|NM_069173|Y73F4A.1 ## Same_strand|Intronic_non-coding|NM_067472|Y38C1AA.6 ## Opposite_strand|Intronic_coding|NM_069190|daf-10 ## {Repeats: no}

block3465 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.190	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	5	0	3arm	8	nd	0.30	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------UUUGAAU-----------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------GTTTGAATGCAGGCCGTTGG-----	20	1
cbriggsae	acgcttcaaactggtgacgttggcgggaGTTTGAATGCAGGCCGTTGGagtgt
	*****************************************************
cbriggsae	(((((((((...(((..(((((((....)))..))))...))).)))))))))	0.850 -15.00

cbriggsae

chromosome:chrUn:3914565:3914617:1

{Repeats: no}

block1325 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.598	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	0	11	3arm	8	nd	0.42	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------UUUGAAU------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------GTTTGAATGCAGGCCGTTGG	20	1
cbriggsae	attggtggagtgtacgcacgagacgcttaaaactggtgacgttggcgggaGTTTGAATGCAGGCCGTTGG
	**********************************************************************
	--------------------------------------------------------------------------------	NM_001011629
	--------------------------------------------------------------------------------	NM_172925
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065286
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001093260
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009573
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_130279
cbriggsae	.((..(((..((((..((.....((((......((....))..))))......))..))))..)))..))	0.620 -14.80

cbriggsae

chromosome:chrIII:2310492:2310561:-1

Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_non-coding|NM_065286|Y53G8AR.6 ## {Repeats: no}

block3531 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.122	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	7	21	5arm	3	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	--------UUGAAAA------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------ATTGAAAATCGGTCAACGCAT-----------------------------------------------------------------------------------	21	1
cbriggsae	tttaaaaATTGAAAATCGGTCAACGCATgccggagttatggtccattgaaaatcgaaaaatcgatgcatcgtaaaagggttgtaaacgatcggaattgtcatcatttaaat
	***************************************************************************************************************
cbriggsae	((((((...(((...((((((...(((.(((....(((((((.((((((...........)))))).)))))))...))))))....)))))).....)))...)))))).	0.960 -22.70

cbriggsae

chromosome:chrUn:4857389:4857499:1

{Repeats: no}

block1084 [novel_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.163	no	no	0.45/0.45	22/22/1.00	0.0	0.0	3	0	1	0	12	-1	5arm_loop	1	nd	0.18	2	3	1	na	na

		reads	miRBase family seed
seed	-------------AGCUCAA----------------------------------------------------------	3	novel
		len	cloning frequencies
			AF16
	------------GAGCTCAAAGTCATCGTATTCC--------------------------------------------	22	3
cbriggsae	ggctctgataagGAGCTCAAAGTCATCGTATTCCacgtcatcaatcgaatacggtaggtttagattcttttcgttgtc
	******************************************************************************
	----------------------------------------------------------------------------------------	NM_001122953
	----------------------------------------------------------------------------------------	NM_001011629
	----------------------------------------------------------------------------------------	NM_001122952
	----------------------------------------------------------------------------------------	NM_010905
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_152660
	----------------------------------------------------------------------------------------	NM_199214
cbriggsae	(((..(((.((((((.((.((((((((((((((.............))))))))).))))).)))))))))))..)))	0.910 -16.82

cbriggsae

chromosome:chrII:13445120:13445197:1

Opposite_strand|Intronic_non-coding|NM_001122953|Nfia ## Same_strand|Intronic_non-coding|NM_152660|FAM76A ## Opposite_strand|Intronic_coding|NM_199214|col1a1 ## {Repeats: no}

block3105 [novel_lenNOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.484	no	no	0.36/0.36	25/25/0.00	0.0	0.0	1	0	1	0	16	18	5arm	3	nd	0.28	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------UUACUAG------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------TTTACTAGAGTTGATATGTCGACCT-------------------------------------------------------------------------------	25	1
cbriggsae	catactaaaaatcactTTTACTAGAGTTGATATGTCGACCTttgtgataactgtttttattattatattagaaaattatatattgcatatttattttaggaaaattaaaatttgaagtgt
	************************************************************************************************************************
cbriggsae	.(((((..((((...((((.(((((((.((((((.(((....((((((.....((((((.........))))))))))))..))))))))).))))))).)))).....))))..)))))	0.590 -16.20

cbriggsae

chromosome:chrUn:4217305:4217424:-1

{Repeats: no}

block280 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.113	no	no	0.46/0.46	24/24/1.00	0.0	0.0	1	0	1	0	20	0	3arm	2	nd	0.25	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------AUUCGGA------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------GATTCGGATTGGTTTTGGTACACC--------------------	24	1
cbriggsae	cggccattcttttttttttttttggttttcaggaaatgtggatcaaacGATTCGGATTGGTTTTGGTACACCgattaaggagaaatgttgtc
	********************************************************************************************
	------------------------------------------------------------------------------------------------------	NM_177366
	------------------------------------------------------------------------------------------------------	NM_001069244
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_058481
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_014920
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_016513
	------------------------------------------------------------------------------------------------------	NM_059707
	------------------------------------------------------------------------------------------------------	NM_010301
	------------------------------------------------------------------------------------------------------	NM_008139
cbriggsae	.(((.((...(((((((((..(((((..(((((((((.((((((....)))))).)))..))))))...)))))..))))))))).)).)))	0.990 -21.50

cbriggsae

chromosome:chrI:2330146:2330237:1

Opposite_strand|Intronic_non-coding|NM_177366|Gpr157 ## Same_strand|Intronic_non-coding|NM_058481|ubc-3 ## {Repeats: no}

block2356 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.216	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	13	12	5arm	1	nd	0.29	3	1	1	na	na

		reads	miRBase family seed
seed	--------------UGAAGUG--------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------TTGAAGTGGGCTCAGATCTTG-------------------------------------------------------	21	1
cbriggsae	tttcaagtttcagTTGAAGTGGGCTCAGATCTTGtatcattttcggcattttgaagaatttcgtatttgatatttcgattttttgaaat
	*****************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_123965
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_024349
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_019034
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001016369
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001032772
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001040602
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001093711
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001095157
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199692
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001033835
	---------------------------------------------------------------------------------------------------	NM_001047948
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_175092
	---------------------------------------------------------------------------------------------------	NM_065286
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001123190
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001126828
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001010953
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001127285
cbriggsae	(((((((....((((((((((...((((((..((.....(((((((....)))))))....)).)))))))))))))))).))))))).	0.560 -15.60

cbriggsae

chromosome:chrIV:613287:613375:1

block5052 [novel_randfoldOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	5	30	3arm	1	nd	0.48	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------------------CUUGAGA------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------------------------------ACTTGAGACATTTTCTCACAC-----	21	1
cbriggsae	tggataggatgacttgtctcgttttcattttcagagattgggatgtgaaatcaattttatcaccttcaaattctgaaaatgattacACTTGAGACATTTTCTCACACatcca
	****************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001004313
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008873
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001088391
cbriggsae	.((((..((.((..((((((((..((((((((((((.(((((..((((((......)).)))).))))).))))))))))))..))....))))))..)).))....)))).	0.850 -34.10

cbriggsae

chromosome:chrX:14335091:14335202:1

Same_strand|Intronic_non-coding|NM_001004313|TMEM220 ## {Repeats: no}

block4889 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.038	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	40	2	5arm	1	nd	0.28	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------CUGGACC------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------ACTGGACCGGATTGTTGT--------------------------------------------------------------	18	1
cbriggsae	gagcttcagatggagtaccgaagcttcagttgaagatcgcACTGGACCGGATTGTTGTcgtctactcggagcaatctttctggttcctgactttatttgctttggagctactggagactt
	************************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------------	NM_153821
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_125756
	----------------------------------------------------------------------------------------------------------------------------------	NM_204793
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_079593
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_169386
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_176459
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001016575
	----------------------------------------------------------------------------------------------------------------------------------	NM_001085944
cbriggsae	(((((((((....(((.(((((((......(((((.(((.((..((..((((((((.(((......))))))))))).))..))...))))))))...))))))).))).)))))).)))	0.980 -39.10

cbriggsae

chromosome:chrX:6619048:6619167:1

Opposite_strand|Intronic_non-coding|NM_153821|Prrx1 ## Same_strand|Intronic_coding|NM_125756|HEN3 ## Same_strand|Intronic_non-coding|NM_079593|pros ## {Repeats: no}

block3457 [novel_shortStem_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.071	no	no	0.41/0.41	22/22/1.00	0.0	0.0	1	0	1	0	0	-2	3arm_loop	1	nd	0.24	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------GUUGAUU--------------	1	novel
		len	cloning frequencies
			AF16
	--------------------GGTTGATTTATCAATGGCCATG	22	1
cbriggsae	tatggttggagaagttagccGGTTGATTTATCAATGGCCATG
	******************************************
cbriggsae	(((((((.((.(((((((....))))))).))...)))))))	1.000 -10.10

cbriggsae

chromosome:chrUn:3716990:3717031:1

{Repeats: no}

block3 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.381	no	no	0.61/0.61	18/18/0.00	0.0	0.0	1	0	1	0	4	31	5arm	1	nd	0.17	2	1	1	na	na

		reads	miRBase family seed
seed	-----UCUGAUG-------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----GTCTGATGCGACTGCTGG---------------------------------------------------------------------------------------	18	1
cbriggsae	tggcGTCTGATGCGACTGCTGGatcatctcgtcgcttagacgctggaactcgaaatcgtcgtcgatgggcggtgcgaatgattgtcgtggcggtggtggtggagcgtcg
	*************************************************************************************************************
	-----------------------------------------------------------------------------------------------------------------------	NM_001011629
	-----------------------------------------------------------------------------------------------------------------------	NM_004525
	-----------------------------------------------------------------------------------------------------------------------	NM_004525
	-----------------------------------------------------------------------------------------------------------------------	NM_059726
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_184109
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_184109
	-----------------------------------------------------------------------------------------------------------------------	NM_018557
	-----------------------------------------------------------------------------------------------------------------------	NM_001107843
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_184109
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_184109
	-----------------------------------------------------------------------------------------------------------------------	NM_074182
	-----------------------------------------------------------------------------------------------------------------------	NM_071760
cbriggsae	.(((((((..(((.((((((((((.(((...((((.....((((.....((((........))))..))))..))))..))).))).))))))).)))..))).)))).	0.490 -37.00

cbriggsae

chromosome:chrI:189795:189903:-1

Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_coding|NM_004525|LRP2 ## Same_strand|Intronic_coding|NM_184109|Rtl1 ## {Repeats: no}

block2953 [novel_lenNOK_5varHIGH_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.060	no	no	0.28/0.29	18/21/0.50	1.5	0.0	2	0	1	0	19	-3	3arm	2	nd	0.22	3	2	1	na	na

		reads	miRBase family seed
seed	------------------------------------------AGAAUUG--------------------------------	1	novel
seed	---------------------------------------------AUUGUUG-----------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------AATTGTTGACTGTTAATC-------------------	18	1
	-----------------------------------------AAGAATTGTTGACTGTTAATC-------------------	21	1
cbriggsae	gttttgaggtaactcgtagtttttaagagttagtttaattaAAGAATTGTTGACTGTTAATCaaaaggtatacctcttaat
	*********************************************************************************
cbriggsae	(((..(((((((((........((((.((((((..(((((....))))))))))).))))......))).))))))..)))	0.970 -15.44

cbriggsae

chromosome:chrM:12384:12464:-1

{Repeats: no}

block1935 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.043	no	no	0.39/0.39	18/18/0.00	0.0	0.0	3	0	1	0	8	1	3arm	1	nd	0.22	2	3	1	na	na

		reads	miRBase family seed
seed	---------------------------------------AACGAGU------------------	3	novel
		len	cloning frequencies
			AF16
	--------------------------------------TAACGAGTTTGCATCTTC--------	18	3
cbriggsae	atttcttgataaattttgataaaatttgatgtttctaaTAACGAGTTTGCATCTTCaaggaata
	****************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182297
	--------------------------------------------------------------------------	NM_005650
	--------------------------------------------------------------------------	NM_181492
cbriggsae	(((((((((........(((.(((((((.(((.....))).)))))))..))).))))))))).	0.470 -11.70

cbriggsae

chromosome:chrIV:1267247:1267310:-1

Same_strand|Intronic_non-coding|NM_182297|B0546.4 ## Opposite_strand|Intronic_non-coding|NM_005650|TCF20 ## {Repeats: no}

block184 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.073	no	no	0.25/0.25	20/20/1.00	0.0	0.0	1	0	1	0	15	22	3arm	1	nd	0.25	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------------AAUGCCU---------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------------------------TAATGCCTAAATTTTAGAAG---------------	20	1
cbriggsae	ggtactgtaatttttcgaaatttttccgtttcacaatattcatataggagtatgatggaggtgaatgatgtTAATGCCTAAATTTTAGAAGattttgcagatgctt
	**********************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------	NM_001106587
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061648
	--------------------------------------------------------------------------------------------------------------------	NM_060440
cbriggsae	((((((((((.((((((((((((...((((((((.....((((((....)))))).....)))))........)))...))))))).)))))..)))))).)))).	0.650 -22.80

cbriggsae

chromosome:chrI:9005703:9005808:-1

Opposite_strand|Intronic_non-coding|NM_001106587|Tnpo3 ## Same_strand|Intronic_coding|NM_061648|sdz-18 ## Opposite_strand|Intronic_coding|NM_060440|srt-62 ## {Repeats: no}

block4858 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.424	no	no	0.58/0.58	19/19/0.00	0.0	0.0	1	0	1	0	2	4	3arm	1	nd	0.26	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------UAUUCCA-------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------CTATTCCATCCACCTGGCC--	19	1
cbriggsae	gcagccaaattgttttttttttgatgtatagttttagttgtactgaCTATTCCATCCACCTGGCCgt
	*******************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105250
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_004796
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_138970
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087279
	-----------------------------------------------------------------------------	NM_166414
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001086648
cbriggsae	((.((((...((..........((((.((((((..((.....))))))))..))))))..)))).))	0.640 -9.60

cbriggsae

chromosome:chrX:5036590:5036656:1

Same_strand|Intronic_non-coding|NM_001105250|NRXN3 ## Opposite_strand|Intronic_coding|NM_166414|Act57B ## {Repeats: no}

block4631 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.022	no	no	0.44/0.44	18/18/0.00	0.0	0.0	1	0	1	0	42	-3	3arm_loop	1	nd	0.44	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------AUCAGAA----------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------CATCAGAATAGACGCCTT------------------------------------------	18	1
cbriggsae	ggtggtcttcctactggcccagacgcgtcgcaaggagttctggcgtttctccttgaCATCAGAATAGACGCCTTcggctccttctcgattttttggtttgaagaatgggagccact
	********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001030307
cbriggsae	(((((.(((((..((...(((((...((((.((((((((..(((((((....(((....)))...)))))))...))))))))..))))..))))).....))...))))))))))	0.990 -41.20

cbriggsae

chromosome:chrX:15904846:15904961:-1

Same_strand|Intronic_non-coding|NM_001030307|Dkc1 ## {Repeats: no}

block2518 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.040	no	no	0.42/0.42	19/19/0.00	0.0	0.0	2	0	1	0	9	21	5arm	1	nd	0.32	4	2	1	na	na

		reads	miRBase family seed
seed	----------ACAAGUG--------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	---------GACAAGTGACCGAATCAAA---------------------------------------------------------------	19	2
cbriggsae	ctacaatttGACAAGTGACCGAATCAAAgtaatcaaagttatcctgatgctttatttggatttcgatttgctttttcggattgttagtagt
	*******************************************************************************************
	-----------------------------------------------------------------------------------------------------	NM_001105717
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_198022
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020066
cbriggsae	((((....((((((....(((((..(((((((........((((.((((...)))).))))......)))))))))))).)))))))))).	0.980 -19.24

cbriggsae

chromosome:chrIV:3237920:3238010:1

Opposite_strand|Intronic_non-coding|NM_001105717|Dpysl2 ## Same_strand|Intronic_non-coding|NM_198022|Tnrc6c ## Same_strand|Intronic_coding|NM_020066|FMN2 ## {Repeats: no}

block44 [novel_Multihit_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.337	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	1	13	3arm	47	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------UAAUGGU--------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------GTAATGGTCAGCATGGATGCC-	21	1
cbriggsae	cggcagccaccgcaatatgtacgccttggaagctttaatgagtgtgcgcgttcgtggtGTAATGGTCAGCATGGATGCCt
	********************************************************************************
	------------------------------------------------------------------------------------------	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199320
	------------------------------------------------------------------------------------------	NM_014333
	------------------------------------------------------------------------------------------	NM_001098517
	------------------------------------------------------------------------------------------	NM_061553
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067080
cbriggsae	.((((.(((..((.((...((((((.((((.((............))...)))).))))))...))..)).))).)))).	0.750 -24.10

cbriggsae

chromosome:chrI:1368003:1368082:-1

block4492 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.090	no	no	0.47/0.47	19/19/0.00	0.0	0.0	1	0	1	0	3	1	3arm	1	nd	0.05	1	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------UGAAGUU--------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------CTGAAGTTTGTCGTGGATG---	19	1
cbriggsae	catattcaaaatattttgaaagacattagaaatttccagctcgaaacgCTGAAGTTTGTCGTGGATGtgg
	**********************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_129875
	--------------------------------------------------------------------------------	NM_007789
cbriggsae	((((((((.............((((.....(((((.((((.......))))))))))))).)))))))).	0.470 -14.64

cbriggsae

chromosome:chrX:9427471:9427540:-1

Same_strand|Intronic_non-coding|NM_129875|ARA4 ## Opposite_strand|Intronic_non-coding|NM_007789|Ncan ## {Repeats: no}

block2475 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.030	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	1	3	3arm	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------CCAGUGC------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------TCCAGTGCGTATGCGATGT-	19	1
cbriggsae	tattttgttcgcattcaaacaaaaatgtTCCAGTGCGTATGCGATGTa
	************************************************
	----------------------------------------------------------	NM_020714
	----------------------------------------------------------	NM_060105
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047451
cbriggsae	(((.((((.((((((..((((....))))..))))))...)))).)))	1.000 -11.20

cbriggsae

chromosome:chrIV:2695031:2695078:1

Opposite_strand|Intronic_non-coding|NM_020714|ZNF490 ## Same_strand|Intronic_coding|NM_001047451|C27H2.2 ## {Repeats: no}

block1819 [novel_cloningOK_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.593	no	no	0.50/0.57	21/23/1.00	0.0	0.3	7	0	1	0	7	9	3arm	20	nd	0.22	3	9	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------CCUUAGG----------------------	7	novel
seed	---------------------------------------------------------UAGGUCG-------------------	1	novel
seed	----------------------------------------------------------AGGUCGC------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------TCCTTAGGTCGCTGGTTCGAATC-------	23	5
	-----------------------------------------------------TCCTTAGGTCGCTGGTTCGAAT--------	22	2
	---------------------------------------------------------TAGGTCGCTGGTTCGAATCCG-----	21	1
	--------------------------------------------------------TTAGGTCGCTGGTTCGAATCCG-----	22	1
cbriggsae	cgtgccgtcgatagctcagttgatagagcggaggactgtagagtcagtgggtaTCCTTAGGTCGCTGGTTCGAATCcggctcg
	***********************************************************************************
	---------------------------------------------------------------------------------------------	NM_001039389
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_135472
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_164874
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205951
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205952
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205953
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001092606
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001004296
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064155
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122952
	---------------------------------------------------------------------------------------------	NM_075505
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007496
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010905
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067755
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067378
	---------------------------------------------------------------------------------------------	NM_001031045
	---------------------------------------------------------------------------------------------	NM_133381
cbriggsae	((.((((((((..((.(((.((((..((.(((..((((......)))).....)))))..)))))))))))))...)))).))	0.480 -24.00

cbriggsae

chromosome:chrIII:11617805:11617887:1

Opposite_strand|Intronic_non-coding|NM_001039389|Wdr37 ## Same_strand|Intronic_non-coding|NM_135472|nAcRalpha-30D ## Same_strand|Intronic_coding|NM_001004296|rdx ## {Repeats: no}

block1988 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.141	no	no	0.50/0.50	22/22/1.00	0.0	0.0	1	0	1	0	35	4	3arm	1	nd	0.27	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------AUCCAGC-------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------GATCCAGCTCTAGTCAATGGTG-----------------------------------	22	1
cbriggsae	tagtgctggcttggatgctccttgaacagatgtacttggggatctggatggtcttctgaatGATCCAGCTCTAGTCAATGGTGatctggattgtctaggtggtccagaagtcgatgct
	**********************************************************************************************************************
cbriggsae	.(((..((((((((((...(((.((.(((((.((((((.(((.((((((..((....))...)))))).)))...))..))))))))).....)).)))..)))))..)))))..)))	0.860 -35.10

cbriggsae

chromosome:chrIV:2165038:2165155:-1

{Repeats: no}

block4944 [novel_shortStem_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.57/0.57	21/21/1.00	0.0	0.0	1	0	1	0	4	10	5arm	2	nd	0.29	3	1	1	na	na

		reads	miRBase family seed
seed	-----UUCCGGU---------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----TTTCCGGTGCTGACTGGATGG--------------------------------------------------------	21	1
cbriggsae	aaagTTTCCGGTGCTGACTGGATGGcttcttgactcttcttggtcattttttgagaagttgttcgattaatctggaaattt
	*********************************************************************************
	-------------------------------------------------------------------------------------------	NM_129875
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007789
cbriggsae	.((((((((((...(((.((((..(((((((((((......))))).......))))))..)))).)))..))))))))))	1.000 -26.51

cbriggsae

chromosome:chrX:9410470:9410550:1

Opposite_strand|Intronic_non-coding|NM_129875|ARA4 ## Same_strand|Intronic_non-coding|NM_007789|Ncan ## {Repeats: no}

block4198 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.811	no	no	0.59/0.59	22/22/1.00	0.0	0.0	1	0	1	0	7	18	5arm	1	nd	0.32	2	1	1	na	na

		reads	miRBase family seed
seed	--------AAUCGGG--------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------GAATCGGGGTGTGGCGGAACAA------------------------------------------------------------------------------	22	1
cbriggsae	cacagaaGAATCGGGGTGTGGCGGAACAAcaaaaaagtgagaatacccggtggtgttgttaatatatttttagtcatttagcataataaatttgttttaaattagtg
	***********************************************************************************************************
	---------------------------------------------------------------------------------------------------------------------	NM_001026206
	---------------------------------------------------------------------------------------------------------------------	NM_071054
	---------------------------------------------------------------------------------------------------------------------	NM_074620
	---------------------------------------------------------------------------------------------------------------------	NM_074618
	---------------------------------------------------------------------------------------------------------------------	NM_074614
	---------------------------------------------------------------------------------------------------------------------	NM_077929
	---------------------------------------------------------------------------------------------------------------------	NM_001028567
	---------------------------------------------------------------------------------------------------------------------	NM_067949
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_063805
	---------------------------------------------------------------------------------------------------------------------	NM_074647
	---------------------------------------------------------------------------------------------------------------------	NM_074619
	---------------------------------------------------------------------------------------------------------------------	NM_070063
cbriggsae	......(((((.((..(((.((.(((..((.(((((.(((.((((((....)))))).))).....))))).))..))).))...)))..)).))))).........	0.580 -15.00

cbriggsae

chromosome:chrV:13790187:13790293:1

Opposite_strand|Intronic_coding|NM_001026206|nhr-50 ## Same_strand|Intronic_coding|NM_063805|srh-135 ## {Repeats: no}

block734 [novel_lenNOK_shortStem_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.005	no	no	0.35/0.35	26/26/0.00	0.0	0.0	1	0	1	0	2	5	3arm	1	nd	0.19	3	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------AUUAAAA--------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------------------GATTAAAATGGTGACAAAGCAGAATC--	26	1
cbriggsae	tgatttctttgcttttctttccaaactaatgagtgtcacggcattGATTAAAATGGTGACAAAGCAGAATCaa
	*************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047975
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047939
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064155
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_101724
	-----------------------------------------------------------------------------------	NM_001011629
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001055069
	-----------------------------------------------------------------------------------	NM_001090075
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_202130
cbriggsae	((((((...((((((((...(((...((((.(((((....))))).))))...))).)).)))))))))))).	1.000 -19.90

cbriggsae

chromosome:chrII:9067061:9067133:-1

Same_strand|Intronic_coding|NM_001047975|LOC683871 ## Same_strand|Intronic_non-coding|NM_064155|Y17G7B.3 ## Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_coding|NM_001090075|MGC69046 ## {Repeats: no}

block2887 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.339	no	no	0.27/0.27	26/26/0.00	0.0	0.0	1	0	1	0	8	1	3arm	1	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------UUAAGAG--------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------ATTAAGAGGTTCTATAATCACAGAAT--------	26	1
cbriggsae	agtttttggggtctggaagaggacagttttttttttgATTAAGAGGTTCTATAATCACAGAATacgagcta
	***********************************************************************
	---------------------------------------------------------------------------------	NM_075117
cbriggsae	(((((.((...((((((..(((((..(((..((...))..)))..)))))....)).)))).)).))))).	0.830 -12.40

cbriggsae

chromosome:chrIV_random:116162:116232:1

Opposite_strand|Intronic_non-coding|NM_075117|Y59A8B.22 ## {Repeats: no}

block1066 [novel_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.900	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	0	3	3arm	49	nd	0.26	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------CGUUCGU------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------GCGTTCGTGGTGTAATGGTC	20	1
cbriggsae	gacacacggttatcatcggccgccatcactctcttccctcgacGCGTTCGTGGTGTAATGGTC
	***************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001030387
cbriggsae	(((.((....(((((.((..(((..((.............)).)))..)))))))...)))))	0.430 -11.02

cbriggsae

chromosome:chrII:12768973:12769035:1

Same_strand|Intronic_non-coding|NM_001030387|ARIH1 ## {Repeats: no}

block87 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.188	no	no	0.55/0.55	22/22/1.00	0.0	0.0	1	0	1	0	21	13	5arm	15	nd	0.18	2	1	1	na	na

		reads	miRBase family seed
seed	----------------------UUUCGAG---------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------GTTTCGAGTGTGTGTGCGCCTT-------------------------------------------------------------------------	22	1
cbriggsae	taaatgtaggccagtgaacccGTTTCGAGTGTGTGTGCGCCTTtaaccccttcgtggcgacacctcaacgatagggcgcgcttgcacgaagagagagaaaattggcgggaatttga
	********************************************************************************************************************
	------------------------------------------------------------------------------------------------------------------------------	NM_020177
	------------------------------------------------------------------------------------------------------------------------------	NM_001032736
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_122649
	------------------------------------------------------------------------------------------------------------------------------	NM_059191
	------------------------------------------------------------------------------------------------------------------------------	NM_115574
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_120834
cbriggsae	(((((....((((((.......((((..(((((.(((((((((..........(((....))).........))))))))).)))))...))))......))))))....))))).	0.990 -37.13

cbriggsae

chromosome:chrI:3460902:3461017:-1

Opposite_strand|Intronic_non-coding|NM_020177|FEM1C ## Opposite_strand|Intronic_coding|NM_001032736|cnp-3 ## Same_strand|Intronic_non-coding|NM_122649|HTA7 ## Same_strand|Intronic_coding|NM_120834|GRP18 ## {Repeats: no}

block3249 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.757	no	no	0.48/0.48	21/21/1.00	0.0	0.0	2	0	1	0	9	13	5arm	7	nd	0.29	4	2	1	na	na

		reads	miRBase family seed
seed	----------CUUACGA------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	---------GCTTACGACCATATCACGTTG-----------------------------------------------------------------	21	2
cbriggsae	gagaaaaatGCTTACGACCATATCACGTTGaatgcacgccatcccgtccgatctggcaagttaagcaacgttgagtccagttagtacttggatcg
	***********************************************************************************************
	.................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<.	NM_170601
cbriggsae	((...((.((((.(((((((....((((((...((..((((((......))..))))..))....)))))))).)))..)).)))).))...)).	0.690 -18.90

cbriggsae

chromosome:chrUn:4857921:4858015:-1

Opposite_strand|Boundary_non-coding|NM_170601|SIAE ## {Repeats: no}

block3496 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.696	no	no	0.26/0.26	27/27/0.00	0.0	0.0	1	0	1	0	19	7	5arm	2	nd	0.44	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------UUUUAUA----------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------GTTTTATAATAATTGGGATAGTTGTAG---------------------------------------------------------------	27	1
cbriggsae	ccagttttttcttagtcttGTTTTATAATAATTGGGATAGTTGTAGtggagctataaatacagctttaactaatcgtctaggtgattatttcatatttgtcttttttgg
	*************************************************************************************************************
cbriggsae	((((........(((...((....(((((.((..(((..((((...(((((((........)))))))..))))..)))..)).)))))..))...)))......))))	0.440 -15.34

cbriggsae

chromosome:chrUn:4253650:4253758:1

{Repeats: no}

block1510 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.044	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	3	11	3arm	1	nd	0.47	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------CAAUGCC--------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------TCAATGCCGCGGTTAAAGG---	19	1
cbriggsae	ggattaccacaatgggcgtcttgatagatacgttctatcagaccTCAATGCCGCGGTTAAAGGtct
	******************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075282
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_133381
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008273
	----------------------------------------------------------------------------	NM_001094712
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199449
	----------------------------------------------------------------------------	NM_065202
cbriggsae	((((((((.((.((((.(((.(((((((.....)))))))))))))).))....)))....)))))	0.690 -18.90

cbriggsae

chromosome:chrIII:10225916:10225981:-1

Same_strand|Intronic_non-coding|NM_075282|wrs-1 ## Same_strand|Intronic_coding|NM_008273|Hoxd11 ## Opposite_strand|Intronic_non-coding|NM_001094712|LOC495006 ## {Repeats: no}

block2032 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.291	no	no	0.40/0.40	25/25/0.00	0.0	0.0	1	0	1	0	5	19	3arm	1	nd	0.28	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------AUUGGAA----------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------------------------GATTGGAACGACAACTGATAATGCT-----	25	1
cbriggsae	ttttcagtttttttagttgcaaattttcaaaatctaccgtaatttttgttggcgtttttgatgaacaaatggtaataagtagaatGATTGGAACGACAACTGATAATGCTagaaa
	*******************************************************************************************************************
	-----------------------------------------------------------------------------------------------------------------------------	NM_001047555
	-----------------------------------------------------------------------------------------------------------------------------	NM_001047554
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068260
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068267
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068270
cbriggsae	.(((((((.((.(((((((.....((((((..(((((........((((((.(((((.........))))).)))))))))))....))))))...))))))).)).))).))))	0.990 -19.70

cbriggsae

chromosome:chrIV:2934861:2934975:-1

Opposite_strand|Intronic_coding|NM_001047555|str-174 ## Same_strand|Intronic_coding|NM_068260|str-175 ## {Repeats: no}

block2137 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.088	no	no	0.35/0.35	20/20/1.00	0.0	0.0	1	0	1	0	17	20	5arm	1	nd	0.35	4	1	1	na	na

		reads	miRBase family seed
seed	------------------AGAUACU---------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------TAGATACTCTAGGCTTATGT---------------------------------------------------------------------------	20	1
cbriggsae	aacgttgattgatttatTAGATACTCTAGGCTTATGTctgaaatacaatatctagtttagaaaactggagatgttaagcttacacatctgtttctaatatcccacgaacgtt
	****************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028224
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001001614
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028225
	--------------------------------------------------------------------------------------------------------------------------	NM_173611
	--------------------------------------------------------------------------------------------------------------------------	NM_001109807
	--------------------------------------------------------------------------------------------------------------------------	NM_200495
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_069815
	--------------------------------------------------------------------------------------------------------------------------	NM_026578
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_175389
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068620
cbriggsae	((((((...((...(((((((.((..((((((((..........(((...(((((((.....)))))))..))))))))))).......)).)))))))...))..))))))	0.460 -22.30

cbriggsae

chromosome:chrIV:6436695:6436806:-1

Same_strand|Intronic_non-coding|NM_001028224|T22D1.3 ## Opposite_strand|Intronic_coding|NM_173611|FAM98B ## Same_strand|Intronic_coding|NM_069815|T22B3.3 ## {Repeats: no}

block4667 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.166	no	no	0.50/0.63	21/27/0.90	0.0	0.3	7	0	1	0	15	-8	3arm	20	nd	0.52	7	10	1	na	na

		reads	miRBase family seed
seed	-------------------------------------CCUUAGG------------------------------	7	novel
seed	---------------------------------------------CGCUGGU----------------------	1	novel
seed	-----------------------------------------AGGUCGC--------------------------	1	novel
seed	----------------------------------------UAGGUCG---------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------TCCTTAGGTCGCTGGTTCGAATC---------------	23	5
	------------------------------------TCCTTAGGTCGCTGGTTCGAAT----------------	22	2
	---------------------------------------TTAGGTCGCTGGTTCGAATCCG-------------	22	1
	----------------------------------------TAGGTCGCTGGTTCGAATCCG-------------	21	1
	--------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA---	27	1
cbriggsae	agttggtagagcggaggactgtagagtcagtgggtaTCCTTAGGTCGCTGGTTCGAATCcggctcgacggattt
	**************************************************************************
	------------------------------------------------------------------------------------	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064155
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001101467
	------------------------------------------------------------------------------------	NM_205032
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001040239
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_063962
cbriggsae	((((.((.((((...(((.....((..((((((...........))))))..))...))).)))).)).)))).	0.990 -21.90

cbriggsae

chromosome:chrX:16975349:16975422:-1

Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_non-coding|NM_064155|Y17G7B.3 ## Same_strand|Intronic_coding|NM_063962|let-858 ## {Repeats: no}

block2935 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.365	no	no	0.19/0.19	21/21/1.00	0.0	0.0	1	0	1	0	35	2	3arm	3	nd	0.29	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------UUUUAAA------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------ATTTTAAAATGTTTACTTGTG-----------------------------------	21	1
cbriggsae	ttagataattttaagagatgatgttttggtactatagaataatttagcttaatagtttATTTTAAAATGTTTACTTGTGgtgtaaaagaaatttagagctttaaaatttattta
	******************************************************************************************************************
cbriggsae	.(((((((.(((.((((.(((..((((..((((((((((((.(((((..(((....)))..))))).)))))...)))))))..))))....)))...)))).))).)))))))	0.970 -16.30

cbriggsae

chromosome:chrM:3454:3567:-1

{Repeats: no}

block4111 [novel_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.021	no	no	0.45/0.45	20/20/1.00	0.0	0.0	1	0	1	0	1	4	3arm	1	nd	0.30	4	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------AUCCAGA-------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------------GATCCAGATTCAAACCAGGT-	20	1
cbriggsae	tgccggtttgattttcatcatctcagctttctcctcttctcttgtcttctcatccagttGATCCAGATTCAAACCAGGTa
	********************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075092
	------------------------------------------------------------------------------------------	NM_001011629
	------------------------------------------------------------------------------------------	NM_072913
	------------------------------------------------------------------------------------------	NM_072367
	------------------------------------------------------------------------------------------	NM_072366
	------------------------------------------------------------------------------------------	NM_001087279
	------------------------------------------------------------------------------------------	NM_141224
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214496
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001035427
	----------------<<<<<<<<<<<<<-------------------------------------------------------------	NM_072435
cbriggsae	(((((((((((...((......((((((...........................))))))....)).))))))).))))	0.970 -14.43

cbriggsae

chromosome:chrV:10330040:10330119:1

Same_strand|Intronic_coding|NM_075092|srx-18 ## Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_coding|NM_072913|nhr-219 ## Same_strand|Intronic_non-coding|NM_001035427|SERINC1 ## {Repeats: no}

block7 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.338	no	no	0.50/0.50	22/22/1.00	0.0	0.0	2	0	1	0	12	0	5arm	3	nd	0.36	4	2	1	na	na

		reads	miRBase family seed
seed	-------------UAUCCCA--------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	------------GTATCCCAAGTGTCTCTTACGG------------------------------------------	22	2
cbriggsae	gcattgggaccaGTATCCCAAGTGTCTCTTACGGttccaccagttttatcggggcgaggctactgagaccaatagc
	****************************************************************************
	--------------------------------------------------------------------------------------	NM_001011629
	--------------------------------------------------------------------------------------	NM_001051257
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_026191
	--------------------------------------------------------------------------------------	NM_067594
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_184109
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_184109
cbriggsae	(((((((...(((((.((....((((((..((((.....)).))......)))))).)).)))))...))))).))	0.740 -20.30

cbriggsae

chromosome:chrI:421218:421293:-1

Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_coding|NM_001051257|Os01g0834700 ## Same_strand|Intronic_non-coding|NM_026191|Dhx40 ## Same_strand|Intronic_coding|NM_184109|Rtl1 ## {Repeats: no}

block871 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.120	no	no	0.52/0.52	23/23/1.00	0.0	0.0	1	0	1	0	0	11	5arm	1	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	-GCAGGCG---------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	CGCAGGCGATCGAACCATTGTTT------------------------------------------------------	23	1
cbriggsae	CGCAGGCGATCGAACCATTGTTTaaacttttcgccgaagcggaaaaacagaagaagtcgacacggttctatcgaggc
	*****************************************************************************
	---------------------------------------------------------------------------------------	NM_001005457
	---------------------------------------------------------------------------------------	NM_058490
	---------------------------------------------------------------------------------------	NM_075282
	---------------------------------------------------------------------------------------	NM_182230
cbriggsae	.((...((((.(((((..((((...(((((((((....))))))..........))).)))).))))).))))..))	0.410 -19.00

cbriggsae

chromosome:chrII:2013903:2013979:1

Opposite_strand|Intronic_coding|NM_001005457|adsl ## Opposite_strand|Intronic_non-coding|NM_058490|Y71G12B.8 ## {Repeats: no}

block2058 [novel_lenNOK_cloningOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.129	no	no	0.32/0.32	19/19/0.00	0.0	0.0	5	0	1	0	4	25	3arm	1	nd	0.21	3	5	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------------------------AAUCAGU---------------	5	novel
		len	cloning frequencies
			AF16
	---------------------------------------------------------------------------------TAATCAGTCCATTTCGTAT----	19	5
cbriggsae	tttgttgaaaagctgaaagtttttacaaaaattaatgtttcgaagagcatgtaaaaatttcaattcgaaaaatttagttggTAATCAGTCCATTTCGTATaaaa
	********************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105717
	------------------------------------------------------------------------------------------------------------------	NM_112886
	------------------------------------------------------------------------------------------------------------------	NM_079809
	------------------------------------------------------------------------------------------------------------------	NM_020066
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_016802
	------------------------------------------------------------------------------------------------------------------	NM_171306
	------------------------------------------------------------------------------------------------------------------	NM_001026092
	------------------------------------------------------------------------------------------------------------------	NM_067970
	------------------------------------------------------------------------------------------------------------------	NM_070851
	------------------------------------------------------------------------------------------------------------------	NM_071203
cbriggsae	((((((((((.(((((......((((...((((((..((((((((((.((......)))))..)))))))...)))))).)))))))))...))))).))))).	0.840 -17.80

cbriggsae

chromosome:chrIV:3424093:3424196:-1

Same_strand|Intronic_non-coding|NM_001105717|Dpysl2 ## Opposite_strand|Intronic_non-coding|NM_112886|ATATM ## Opposite_strand|Intronic_coding|NM_020066|FMN2 ## {Repeats: no}

block3880 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.166	no	no	0.50/0.63	21/27/0.90	0.0	0.3	7	0	1	0	15	-8	3arm	20	nd	0.52	7	10	1	na	na

		reads	miRBase family seed
seed	-------------------------------------CCUUAGG------------------------------	7	novel
seed	---------------------------------------------CGCUGGU----------------------	1	novel
seed	-----------------------------------------AGGUCGC--------------------------	1	novel
seed	----------------------------------------UAGGUCG---------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------TCCTTAGGTCGCTGGTTCGAATC---------------	23	5
	------------------------------------TCCTTAGGTCGCTGGTTCGAAT----------------	22	2
	---------------------------------------TTAGGTCGCTGGTTCGAATCCG-------------	22	1
	----------------------------------------TAGGTCGCTGGTTCGAATCCG-------------	21	1
	--------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA---	27	1
cbriggsae	agttggtagagcggaggactgtagagtcagtgggtaTCCTTAGGTCGCTGGTTCGAATCcggctcgacggattt
	**************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028567
	------------------------------------------------------------------------------------	NM_001077602
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067949
	------------------------------------------------------------------------------------	NM_063805
	------------------------------------------------------------------------------------	NM_001039440
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070063
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047702
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_074706
cbriggsae	((((.((.((((...(((.....((..((((((...........))))))..))...))).)))).)).)))).	0.990 -21.90

cbriggsae

chromosome:chrV:13857792:13857865:-1

Same_strand|Intronic_coding|NM_001028567|srz-44 ## Opposite_strand|Intronic_coding|NM_001077602|cyp4v2 ## {Repeats: no}

block1270 [novel_cloningHIGH_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.141	no	no	0.55/0.59	18/22/0.98	0.0	0.0	101	0	1	0	25	5	5arm	1	nd	0.32	3	119	1	na	na

		reads	miRBase family seed
seed	--------------------------AUGACAC----------------------------------------------------------------------	118	miR-64
seed	---------------------------UGACACA---------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------CATGACACACTGGCTGGTCTGG--------------------------------------------------------	22	101
	-------------------------CATGACACACTGGCTGGTCT----------------------------------------------------------	20	12
	-------------------------CATGACACACTGGCTGGTCTG---------------------------------------------------------	21	4
	--------------------------ATGACACACTGGCTGGTC-----------------------------------------------------------	18	1
	-------------------------CATGACACACTGGCTGGT------------------------------------------------------------	18	1
cbriggsae	gcctattctactcggcctcgccgacCATGACACACTGGCTGGTCTGGaatgatttcggctcctccggtccgcccgagtgccacgaaacggcgagagccttggc
	*******************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001102902
	-----------------------------------------------------------------------------------------------------------------	NM_001077612
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065190
	-----------------------------------------------------------------------------------------------------------------	NM_001129219
cbriggsae	(((..........((((((((((....((.(((...(((.((.(((((..((.......)).))))).)))))...))).)).....))))))).)))..)))	0.400 -36.60

cbriggsae

chromosome:chrIII:219041:219143:-1

Same_strand|Intronic_non-coding|NM_001102902|LOC100124966 ## Opposite_strand|Intronic_coding|NM_001077612|zgc:153009 ## Opposite_strand|Intronic_non-coding|NM_001129219|nhr-121 ## {Repeats: no}

block634 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.488	no	no	0.67/0.67	18/18/0.00	0.0	0.0	1	0	1	0	16	14	5arm	1	nd	0.39	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------GGGAUGA-------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------CGGGATGAACGCCACGTC---------------------------------------------------------------------	18	1
cbriggsae	ggaccgcttcctgcccCGGGATGAACGCCACGTCaaagccgatgctcacctttgggattggcaatgtggatattgtgacatatgcgggagagcaatggctacc
	*******************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_006287
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009829
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039276
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_201578
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001114006
cbriggsae	.....(((((((((..((.((((....((((((....((((((.((((....)))))))))).)))))).)))).))......)))))).)))..........	0.780 -31.00

cbriggsae

chromosome:chrII:4387584:4387686:-1

Same_strand|Intronic_non-coding|NM_006287|TFPI ## Same_strand|Intronic_coding|NM_201578|psmd12 ## {Repeats: no}

block4861 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.223	no	no	0.55/0.55	22/22/1.00	0.0	0.0	1	0	1	0	5	26	3arm	1	nd	0.23	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------UCCGGUA-------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------------GTCCGGTACGTGTAAGGGTTGT-----	22	1
cbriggsae	gcctcgcggtcatttcttgcagtatcaattgtcccacgttgttagtgtattgcggaagagccctgatgatttctgtgggggtGTCCGGTACGTGTAAGGGTTGTtgagg
	*************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105250
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_004796
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_138970
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087279
	-----------------------------------------------------------------------------------------------------------------------	NM_166414
cbriggsae	.(((((....((.(((((((((((((.((..((((((((..((((.((.((.....)).)).))))..))....))))))..))..))))).)))))))).)).)))))	0.480 -31.80

cbriggsae

chromosome:chrX:5118605:5118713:1

Same_strand|Intronic_non-coding|NM_001105250|NRXN3 ## Opposite_strand|Intronic_coding|NM_166414|Act57B ## {Repeats: no}

sblock56 [novel_lenNOK_cloningOK_multiarm_DicerNOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.346	no	no	0.30/0.48	19/26/0.50	0.0 6.8	0.0 9.6	1 5	0 0	1 1	0 0	8 0	-1 -9	5arm_loop 3arm	3 3	nd nd	0.46 0.36	6 5	6	1	0	-8

		reads	miRBase family seed
seed	---------------------------------------------------UCUUAGC-------------------	1	novel
seed	-----------------------------------------UAAAUGG-----------------------------	1	novel
seed	---------------------------------------UUUAAAU-------------------------------	1	novel
seed	---------UAUAUUA-------------------------------------------------------------	1	novel
seed	-------------------------------------------------------AGCGUGA---------------	1	novel
seed	--------------------------------------AUUUAAA--------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------GTCTTAGCGTGAGGACATTAAGGTAG-	26	1
	-------------------------------------TATTTAAATGGCAGTCTTAG--------------------	20	1
	--------------------------------------ATTTAAATGGCAGTCTTAG--------------------	19	1
	------------------------------------------------------TAGCGTGAGGACATTAAGGTAGC	23	1
	--------TTATATTAAAGCTGGCTTCTGCCC---------------------------------------------	24	1
	----------------------------------------TTAAATGGCAGTCTTAGCGTGAGGAC-----------	26	1
cbriggsae	cttaggctTTATATTAAAGCTGGCTTCTGCCCtatgaTATTTAAATGGCAGTCTTAGCGTGAGGACATTAAGGTAGC
	*****************************************************************************
cbriggsae	(((((.((((((......(((((...(((((...............)))))..)))))))))))...))))).....	0.440 -15.96

cbriggsae

chromosome:chrUn:4252099:4252175:1

{Repeats: no}

block4823 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.216	no	no	0.67/0.67	21/21/1.00	0.0	0.0	1	0	1	0	11	20	3arm	2	nd	0.24	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------------GUGGCCG------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------------------CGTGGCCGTGGAAGAGTGGCT-----------	21	1
cbriggsae	ttgtcctcgtagaaggtattcaaaagattctgccaagcgatcttcaggagtagcagcagcttcaactactgtagcttcgtctggtggtCGTGGCCGTGGAAGAGTGGCTacaggagcaac
	************************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------------	NM_070961
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047939
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001013793
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001094367
cbriggsae	(((((((.((((....(((((......((((((...((((((.(((((...(((.((((.........)))).)))...))))).))))))....))))))))))).)))))))).))).	0.750 -36.50

cbriggsae

chromosome:chrX:2137746:2137865:1

Opposite_strand|Intronic_coding|NM_070961|ergo-1 ## Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_coding|NM_001047939|LOC499407 ## {Repeats: no}

block3126 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.302	no	no	0.21/0.21	19/19/0.00	0.0	0.0	1	0	1	0	17	-4	3arm_loop	2	nd	0.37	3	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------UUUUAUA----------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------TTTTTATATCTTAACGAGT-----------------	19	1
cbriggsae	agtgttttgtgttttttattcaaagttatattttttctcgtttaatcTTTTTATATCTTAACGAGTaaaaaaaaaagatgtta
	***********************************************************************************
cbriggsae	((..((((...((((((((((.(((.((((.....................)))).)))...))))))))))..))))..)).	0.840 -10.50

cbriggsae

chromosome:chrUn:4428808:4428890:-1

{Repeats: no}

block4967 [novel_lenNOK_mirtron_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.003	no	no	0.33/0.33	18/18/0.00	0.0	0.0	1	0	1	0	12	6	5arm	2	2	0.28	4	1	1	na	na

		reads	miRBase family seed
seed	-------------AUCACAG----------------------------------------------------------	1	miR-43
		len	cloning frequencies
			AF16
	------------AATCACAGTCAACTGTTT------------------------------------------------	18	1
cbriggsae	ttcttttttctcAATCACAGTCAACTGTTTtgttttgcgaagagaaaaatagattgagaaagagaaagagaaaaaaga
	******************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001018425
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_076422
	----------------------------------------------------------------------------------------	NM_177350
	----------------------------------------------------------------------------------------	NM_001973
	----------------------------------------------------------------------------------------	NM_001027880
	>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_172495
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031147
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029676
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029675
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_177093
	----------------------------------------------------------------------------------------	NM_007471
	----------------------------------------------------------------------------------------	NM_104285
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001101683
	----------------------------------------------------------------------------------------	NM_001097229
	>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	----------------------------------------------------------------------------------------	NM_001008616
cbriggsae	.(((((((((((..((....(((((((((((.((((....)))).))))))).))))....))....)))))))))))	0.600 -20.00

cbriggsae

chromosome:chrX:10243192:10243269:1

Same_strand|Intronic_coding|NM_001018425|byr1 ## Opposite_strand|Intronic_non-coding|NM_177350|Gldn ## Same_strand|Intronic_non-coding|NM_172495|Ncoa7 ## Opposite_strand|Intronic_coding|NM_001008616|erg ## {Repeats: no}

block2843 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.501	no	no	0.38/0.40	24/25/0.50	0.0	0.5	2	0	1	0	8	-3	5arm_loop	1	nd	0.33	3	2	1	na	na

		reads	miRBase family seed
seed	---------AUUAGGG----------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	--------GATTAGGGTCCAAGTTTCAAAATG------------------------------------------	24	1
	--------GATTAGGGTCCAAGTTTCAAAATGC-----------------------------------------	25	1
cbriggsae	acctctttGATTAGGGTCCAAGTTTCAAAATGCtgttcttttcctttttgattttgtatagtaatctaacctgg
	**************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065289
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064155
	------------------------------------------------------------------------------------	NM_061965
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075402
	------------------------------------------------------------------------------------	NM_001024205
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001026513
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001094113
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001091618
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001034557
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075282
	------------------------------------------------------------------------------------	NM_064619
	------------------------------------------------------------------------------------	NM_001028390
	------------------------------------------------------------------------------------	NM_001124458
cbriggsae	.((.....(((((..((.((((..((((((...............)))))).)))).))..)))))......))	0.790 -9.36

cbriggsae

chromosome:chrIV:14454728:14454801:1

Same_strand|Intronic_non-coding|NM_065289|Y53G8AR.9 ## Opposite_strand|Intronic_non-coding|NM_061965|F08D12.1 ## {Repeats: no}

block1680 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.099	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	15	7	3arm	1	nd	0.19	1	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------ACCAUGG----------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------GACCATGGATCAGCTCATCGT---------------	21	1
cbriggsae	gcagctggtgtcgatgtgacgattgagccatgggtgatctttccgaagccgtGACCATGGATCAGCTCATCGTcgaacactggaatgt
	****************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066813
	--------------------------------------------------------------------------------------------------	NM_134696
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_206876
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_002709
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_175389
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_172632
	--------------------------------------------------------------------------------------------------	NM_020180
	--------------------------------------------------------------------------------------------------	NM_001025087
	--------------------------------------------------------------------------------------------------	NM_001025088
	--------------------------------------------------------------------------------------------------	NM_001025089
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<-------------------------------------------	NM_059650
cbriggsae	(((.(((((((((((((((...((((.((((((.....(((....)))......)))))).)))).))).)))))).))))))..)))	0.950 -28.80

cbriggsae

chromosome:chrIII:4951387:4951474:1

Same_strand|Intronic_non-coding|NM_066813|R10E12.2 ## Opposite_strand|Intronic_coding|NM_134696|CG2839 ## Opposite_strand|Intronic_non-coding|NM_020180|BRUNOL4 ## {Repeats: no}

block4922 [novel_Multihit_shortStem_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.021	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	4	-3	3arm_loop	47	nd	0.29	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------UAAUGGU-----------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------GTAATGGTCAGCATGGATGCC----	21	1
cbriggsae	gggaggttaatgtgtgcgttcgtggtGTAATGGTCAGCATGGATGCCttcc
	***************************************************
	-------------------------------------------------------------	NM_133381
	-------------------------------------------------------------	NM_002254
	-------------------------------------------------------------	NM_001059519
	-------------------------------------------------------------	NM_024598
	-------------------------------------------------------------	NM_175804
	-------------------------------------------------------------	NM_001089427
	-------------------------------------------------------------	NM_001110788
	-------------------------------------------------------------	NM_001005477
cbriggsae	(((((((..((.(((((..((((......))))...))))).)))))))))	0.990 -17.40

cbriggsae

chromosome:chrX:7915026:7915076:1

Opposite_strand|Intronic_non-coding|NM_133381|Crebbp ## Opposite_strand|Intronic_coding|NM_002254|KIF3C ## {Repeats: no}

block2854 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.321	no	no	0.45/0.45	22/22/1.00	0.0	0.0	1	0	1	0	0	14	5arm	2	nd	0.27	2	1	1	na	na

		reads	miRBase family seed
seed	-UUCGCGA------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	GTTCGCGATTCATCGTCTTCTT----------------------------------------------------------	22	1
cbriggsae	GTTCGCGATTCATCGTCTTCTTcgtcttcttcgtggtaatttctgttgttgttgttgttggtggatgtggatggcgtaca
	********************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_079659
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_206502
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_169746
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_169747
	------------------------------------------------------------------------------------------	NM_001095500
	------------------------------------------------------------------------------------------	NM_001024205
	------------------------------------------------------------------------------------------	NM_001077467
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080629
	..........................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<--------------------	NM_067727
	------------------------------------------------------------------------------------------	NM_201478
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080630
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067556
	------------------------------------------------------------------------------------------	NM_001078490
	------------------------------------------------------------------------------------------	NM_001093393
	...........................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<------------------------	NM_057410
	...........................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<------------------------	NM_057411
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_060547
	------------------------------------------------------------------------------------------	NM_001080495
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001854
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_059112
	------------------------------------------------------------------------------------------	NM_002069
	------------------------------------------------------------------------------------------	NM_001043433
cbriggsae	((.(((.(((((.((((..((.((.......((.((.....))...)).......))..))..))))))))).))).)).	0.850 -15.94

cbriggsae

chromosome:chrIV:14915918:14915997:1

block2516 [novel_cloningOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.764	no	no	0.60/0.62	20/21/1.00	0.0	0.4	5	0	1	0	1	10	5arm	1	nd	0.25	3	5	1	na	na

		reads	miRBase family seed
seed	--CGGUCAU--------------------------------------------------------------------	5	novel
		len	cloning frequencies
			AF16
	-TCGGTCATGATTCGCCCTGG--------------------------------------------------------	20	3
	-TCGGTCATGATTCGCCCTGGG-------------------------------------------------------	21	2
cbriggsae	tTCGGTCATGATTCGCCCTGGGtttgtaaaatgagacaatttgaattccctccagatctgaatttttttcattgaaa
	*****************************************************************************
	---------------------------------------------------------------------------------------	NM_001105717
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_198022
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020066
cbriggsae	((((((...((((((..(((((......((((......))))........)))))...))))))......)))))).	0.840 -10.14

cbriggsae

chromosome:chrIV:3208224:3208300:1

Opposite_strand|Intronic_non-coding|NM_001105717|Dpysl2 ## Same_strand|Intronic_non-coding|NM_198022|Tnrc6c ## Same_strand|Intronic_coding|NM_020066|FMN2 ## {Repeats: no}

block1109 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.122	no	no	0.45/0.45	22/22/1.00	0.0	0.0	1	0	1	0	8	-3	3arm_loop	2	nd	0.36	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------UUCGCGA----------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------GTTCGCGATTCATCGTCTTCTT--------	22	1
cbriggsae	agaaggcttttgaggctcatcgatttcaatagtgtcGTTCGCGATTCATCGTCTTCTTcgtcttct
	******************************************************************
cbriggsae	(((((((....((((.....((((...(((.(((.....))).))).)))).))))...)))))))	0.580 -13.30

cbriggsae

chromosome:chrII:14511861:14511926:1

{Repeats: no}

block1343 [novel_shortStem_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.046	no	no	0.45/0.45	20/20/1.00	0.0	0.0	1	0	1	0	3	-1	5arm_loop	1	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	----AUUUGAU-----------------------------------	1	novel
		len	cloning frequencies
			AF16
	---GATTTGATCCAATGGTGTCG-----------------------	20	1
cbriggsae	catGATTTGATCCAATGGTGTCGacagacatatgagaggaaatctg
	**********************************************
	--------------------------------------------------------	NM_214211
	--------------------------------------------------------	NM_001011629
	--------------------------------------------------------	NM_001035248
	--------------------------------------------------------	NM_057428
	--------------------------------------------------------	NM_001062274
	--------------------------------------------------------	NM_001005123
	--------------------------------------------------------	NM_001091987
	--------------------------------------------------------	NM_001069872
	--------------------------------------------------------	NM_001069872
	--------------------------------------------------------	NM_205075
	--------------------------------------------------------	NM_001037113
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_133195
	--------------------------------------------------------	NM_001022613
	--------------------------------------------------------	NM_001019821
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007496
	--------------------------------------------------------	NM_003333
	--------------------------------------------------------	NM_003333
	--------------------------------------------------------	NM_001033930
	--------------------------------------------------------	NM_001076363
	--------------------------------------------------------	NM_001124194
	--------------------------------------------------------	NM_001126212
	--------------------------------------------------------	NM_001009286
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_013743
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065840
	--------------------------------------------------------	NM_080331
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_024149
	<<<<<<<<<<<<<<<<<<<<<-----------------------------------	NM_065897
cbriggsae	...(((((..((((...(((((....))))).)).))..)))))..	1.000 -11.30

cbriggsae

chromosome:chrIII:2882593:2882638:-1

Opposite_strand|Intronic_coding|NM_214211|UBA52 ## Opposite_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_non-coding|NM_133195|Brunol4 ## Same_strand|Intronic_coding|NM_065840|SR-famA ## Opposite_strand|Boundary_coding|NM_065897|F25B5.2 ## {Repeats: no}

block105 [novel_lenNOK_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.073	no	no	0.33/0.33	18/18/0.00	0.0	0.0	1	0	1	0	0	25	5arm	1	nd	0.28	4	1	1	na	na

		reads	miRBase family seed
seed	-CAUUAGA------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	TCATTAGAGCAGATATCA--------------------------------------------------------------------------------	18	1
cbriggsae	TCATTAGAGCAGATATCAttcgtcatcgctttgtcaatgcggggcaccaacccgcatgtctagattgcagcgcaaacaagataccgtctgcgccatga
	**************************************************************************************************
	------------------------------------------------------------------------------------------------------------	NM_026450
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	------------------------------------------------------------------------------------------------------------	NM_020367
	------------------------------------------------------------------------------------------------------------	NM_177350
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011821
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079844
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134696
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_203923
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001086021
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_113830
	------------------------------------------------------------------------------------------------------------	NM_057433
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001019816
	------------------------------------------------------------------------------------------------------------	NM_010568
cbriggsae	((((....(((((((((.((.((...((((..(((.(((((((.......))))))).....)))...))))...)))))))...))))))...))))	0.830 -27.70

cbriggsae

chromosome:chrI:4381170:4381267:-1

Opposite_strand|Intronic_non-coding|NM_026450|Zfp169 ## Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_coding|NM_134696|CG2839 ## Opposite_strand|Intronic_coding|NM_057433|usp ## {Repeats: no}

block4315 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.814	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	23	0	3arm	8	nd	0.40	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------UUUGAAU-----------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------GTTTGAATGCAGGCCGTTGG-----------------------	20	1
cbriggsae	tggagtcgcacgagacgcttcaaactggtgacgttggcgggaGTTTGAATGCAGGCCGTTGGggtgtaaaagatctgaagaaacc
	*************************************************************************************
cbriggsae	.((..((....((.((((..(((...(((..(((((((....)))..))))...))).)))..))))......))....))..))	0.720 -16.80

cbriggsae

chromosome:chrV_random:2373372:2373456:1

{Repeats: no}

block1535 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.461	no	no	0.48/0.48	23/23/1.00	0.0	0.0	1	0	1	0	17	-3	3arm_loop	1	nd	0.39	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------GAGUUGC--------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------CGAGTTGCATGTGATATTCACCG-----------------	23	1
cbriggsae	tcagaaatgagttctgctgtgaagtgcgctccaacatattcttCGAGTTGCATGTGATATTCACCGtatccaccatgatttgg
	***********************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028998
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028999
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029004
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029003
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029002
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029001
	---------------------------------------------------------------------------------------------	NM_064155
	---------------------------------------------------------------------------------------------	NM_001122952
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_028763
	---------------------------------------------------------------------------------------------	NM_065922
	---------------------------------------------------------------------------------------------	NM_010905
	---------------------------------------------------------------------------------------------	NM_065923
	---------------------------------------------------------------------------------------------	NM_068002
	---------------------------------------------------------------------------------------------	NM_065190
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067159
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_175692
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001093474
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061965
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061817
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075459
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067160
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067659
cbriggsae	.((((.(((.((..(((.(((((...(((..((((...........))))...)))...))))).)))...)))))..)))).	0.610 -16.70

cbriggsae

chromosome:chrIII:11328918:11329000:-1

block2418 [novel_cloningOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.165	no	no	0.37/0.40	19/20/0.83	0.0	0.0	5	0	1	0	0	19	3arm	1	nd	0.32	3	6	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------CUGAAUG------------	6	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------TCTGAATGTGGTAATTAGGG	20	5
	----------------------------------------------------------------TCTGAATGTGGTAATTAGG-	19	1
cbriggsae	ccaatttgaaacaatttcggtttcgaaatatccacaatttcatctgaaaatctggaacaattgaTCTGAATGTGGTAATTAGGG
	************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067544
	----------------------------------------------------------------------------------------------	NM_064155
	----------------------------------------------------------------------------------------------	NM_067624
cbriggsae	((...(((..(((..(((((..((((....((((...((((....))))...))))....)))).))))))))..)))...)).	0.520 -15.50

cbriggsae

chromosome:chrIV:1679359:1679442:1

Same_strand|Intronic_coding|NM_067544|F09C11.1 ## Opposite_strand|Intronic_non-coding|NM_064155|Y17G7B.3 ## {Repeats: no}

block2718 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.800	no	no	0.61/0.61	18/18/0.00	0.0	0.0	1	0	1	0	28	13	5arm	2	nd	0.44	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------CUUCCUG------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------GCTTCCTGGTTGCGACTG--------------------------------------------------------------------------	18	1
cbriggsae	ctgatgtcctagagatcattgtggtgctGCTTCCTGGTTGCGACTGcgaaggactggtctattggcttctcggtgtcccttggagagtcgatcaattgtggcccgctgctggatgatagt
	************************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001014737
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001014738
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001014739
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080349
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_167375
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_167376
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_121448
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001076831
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090075
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047939
	----------------------------------------------------------------------------------------------------------------------------------	NM_068895
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009930
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000092
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000088
	----------------------------------------------------------------------------------------------------------------------------------	NM_001091797
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001036805
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_179831
	----------------------------------------------------------------------------------------------------------------------------------	NM_214491
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031809
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001034853
cbriggsae	(((.(((((.((........((((.(((((....((((((...((.(((.((((.((((....)))).......)))).))).))...))))))...)))))))))..))))))).))).	0.460 -33.40

cbriggsae

chromosome:chrIV:10917563:10917682:1

Same_strand|Intronic_coding|NM_001014737|up ## Opposite_strand|Intronic_coding|NM_068895|C33H5.17 ## {Repeats: no}

block3311 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.818	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	10	4	5arm	1	nd	0.29	3	1	1	na	na

		reads	miRBase family seed
seed	-----------CUGACUG------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------TCTGACTGTATCTTTTCTTGG-----------------------------------------------------	21	1
cbriggsae	ttttgatcaaTCTGACTGTATCTTTTCTTGGcgtgtctcttgtctctcacctaaaactgaactataaaggcgggtatctcaaaa
	************************************************************************************
	----------------------------------------------------------------------------------------------	NM_067560
cbriggsae	.(((((...(((((.((.(((...(((((((.(((............)))))))....)))..))).)).)))))...))))).	0.900 -10.30

cbriggsae

chromosome:chrUn:6314734:6314817:-1

Opposite_strand|Intronic_coding|NM_067560|nhr-76 ## {Repeats: no}

block4312 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.269	no	no	0.39/0.39	18/18/0.00	0.0	0.0	1	0	1	0	4	21	5arm	7	nd	0.22	2	1	1	na	na

		reads	miRBase family seed
seed	-----AAUUGAC------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----CAATTGACACTGAAGAAC--------------------------------------------------------------------	18	1
cbriggsae	ggtcCAATTGACACTGAAGAACtgagtgactacgtcttcggcgtccactcgcctcttgtagtactgttctgcgtcacatcgttagtgcct
	******************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_072005
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_072002
cbriggsae	(((...((((((..((((((((..(((.((((((.....((((......))))...))))))))))))))...)))....))))))))).	0.700 -23.10

cbriggsae

chromosome:chrV_random:1962074:1962163:1

Same_strand|Intronic_coding|NM_072005|srt-70 ## {Repeats: no}

block2378 [novel_lenNOK_cloningOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.821	no	no	0.50/0.53	18/19/0.00	0.0	0.0	7	0	1	0	1	37	5arm	1	23	0.32	2	8	1	na	na

		reads	miRBase family seed
seed	--CCAGCUU---------------------------------------------------------------------------------------------------------------	8	novel
		len	cloning frequencies
			AF16
	-TCCAGCTTCGTAGTGTCTC----------------------------------------------------------------------------------------------------	19	7
	-TCCAGCTTCGTAGTGTCT-----------------------------------------------------------------------------------------------------	18	1
cbriggsae	gTCCAGCTTCGTAGTGTCTCaagcataattcaaatactttcagactgaaccaacgcatgctctaattgtgattggatacggaccagattattggattttgaagaacacctacagtaagat
	************************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070458
	----------------------------------------------------------------------------------------------------------------------------------	NM_182297
	................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	NM_070434
	++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	NM_070435
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	NM_137377
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	NM_166235
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	NM_166236
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	NM_166237
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	NM_206152
	............................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	NM_135543
cbriggsae	(((..(((..(((((((.((...((.(((((.((((.(((....(((..((((((((.........)))).))))...)))...))).))))))))).))..)))))).))))))..)))	0.630 -19.70

cbriggsae

chromosome:chrIV:1153863:1153982:1

Same_strand|Intronic_non-coding|NM_070458|Y73F8A.24 ## Opposite_strand|Intronic_non-coding|NM_182297|B0546.4 ## Same_strand|Intronic_coding|NM_070435|Y40H7A.10 ## {Repeats: no}

block5098 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.689	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	0	12	5arm	1	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	-UUGUUCU--------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	GTTGTTCTCAGTAGCTGTTAT-------------------------------------------------------	21	1
cbriggsae	GTTGTTCTCAGTAGCTGTTATgatactggtacgaaaaaactggagcggtagaaaagaaacgctggtggccatgact
	****************************************************************************
	--------------------------------------------------------------------------------------	NM_011978
cbriggsae	(((((..(((.((((.(((....(((((...((.......))...))))).......))))))).)))..))))).	0.740 -13.20

cbriggsae

chromosome:chrX:14752744:14752819:1

Opposite_strand|Intronic_non-coding|NM_011978|Slc27a2 ## {Repeats: no}

block243 [novel_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.054	no	no	0.50/0.50	22/22/1.00	0.0	0.0	2	0	1	0	28	-3	3arm_loop	3	nd	0.23	2	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------UAUCCCA------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	----------------------------------------GTATCCCAAGTGTCTCTTACGG----------------------------	22	2
cbriggsae	ttagatcgcttcgacaagccgaaaagccgcattgggaccaGTATCCCAAGTGTCTCTTACGGttccaccagttttatcggggcgaggcta
	******************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001051257
	----------------------------------------------------------------------------------------------------	NM_026191
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067594
	----------------------------------------------------------------------------------------------------	NM_184109
	----------------------------------------------------------------------------------------------------	NM_184109
cbriggsae	.(((.((((..(((..(((((((.((.(((.((((((......))))))))).)).)).)))))............)))..))))..)))	0.720 -28.94

cbriggsae

chromosome:chrI:421870:421959:1

Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_coding|NM_001051257|Os01g0834700 ## Opposite_strand|Intronic_non-coding|NM_026191|Dhx40 ## Opposite_strand|Intronic_coding|NM_184109|Rtl1 ## {Repeats: no}

block3107 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.960	no	no	0.30/0.42	19/23/0.67	0.3	1.7	3	0	1	0	14	11	5arm	3	nd	0.35	2	3	1	na	na

		reads	miRBase family seed
seed	----------------AUCAAAG-----------------------------------------------------------------------------	2	novel
seed	---------------AAUCAAA------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------AATCAAAGGGTTCTAAGGATTAA--------------------------------------------------------------	23	2
	--------------CAATCAAAGGGTTCTAAGG-------------------------------------------------------------------	19	1
cbriggsae	gtatgtttgacttcCAATCAAAGGGTTCTAAGGATTAAtaaataatttttttcaaggttataatttattgtttcaacatagtttatttgctagttacatg
	****************************************************************************************************
cbriggsae	.(((((..((((..(((..(((..(((..((.(((.(((..((((((((....)))))))).))).))).))..)))....)))..)))..)))))))))	0.470 -9.80

cbriggsae

chromosome:chrUn:4218222:4218321:-1

{Repeats: no}

block4131 [novel_lenNOK_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.586	no	no	0.37/0.37	27/27/0.00	0.0	0.0	1	0	1	0	0	19	5arm	1	nd	0.22	3	1	1	na	na

		reads	miRBase family seed
seed	-UAUUCGG------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	GTATTCGGATTGTGAATTCTGAAAGGT-----------------------------------------------------------------------	27	1
cbriggsae	GTATTCGGATTGTGAATTCTGAAAGGTgtggaagtcagaacagaaataagggttttcagttagatgctcacctcatgaagaaatttagaattgcgtgc
	**************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	------------------------------------------------------------------------------------------------------------	NM_070507
	------------------------------------------------------------------------------------------------------------	NM_001022613
	------------------------------------------------------------------------------------------------------------	NM_001047733
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001069016
	------------------------------------------------------------------------------------------------------------	NM_003299
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_212567
cbriggsae	((((.((.(((.((((((((...(((((.....(((..(((.((((.......)))).))).)))...))))).....)))).)))).))))).))))	0.940 -17.70

cbriggsae

chromosome:chrV:11721162:11721259:1

block3367 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.017	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	5	25	3arm	1	nd	0.33	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------UACUCAC------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------------GTACTCACTGTTAATTTGGCC-----	21	1
cbriggsae	acatgatcaaactaaccttgttttacttgatcgtcctcaaccaccatcagataacgcatggtgcacaaatgatgaaaatccaGTACTCACTGTTAATTTGGCCaagta
	************************************************************************************************************
cbriggsae	((.((..((((.((((..((...((((.(((..((.(((..((((((..........))))))......))).))..))).))))..))..)))).))))..)).)).	0.990 -21.70

cbriggsae

chromosome:chrUn:590407:590514:1

{Repeats: no}

block904 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.042	no	no	0.70/0.70	23/23/1.00	0.0	0.0	1	0	1	0	4	10	5arm	1	nd	0.48	4	1	1	na	na

		reads	miRBase family seed
seed	-----GUGAGAG--------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----GGTGAGAGGCAACAGGCACGCGG-----------------------------------------------------	23	1
cbriggsae	aagaGGTGAGAGGCAACAGGCACGCGGaacgcctcccttgcgggaagtgttctcccgcatatgtcacatccccccctcta
	********************************************************************************
	------------------------------------------------------------------------------------------	NM_006287
	------------------------------------------------------------------------------------------	NM_009829
	------------------------------------------------------------------------------------------	NM_001039276
	------------------------------------------------------------------------------------------	NM_201578
	------------------------------------------------------------------------------------------	NM_001114006
cbriggsae	.(((((.((..((((....((....(((((((.((((....)))).)))))))...))...))))...))....))))).	0.710 -26.60

cbriggsae

chromosome:chrII:4386950:4387029:1

Opposite_strand|Intronic_non-coding|NM_006287|TFPI ## Opposite_strand|Intronic_coding|NM_201578|psmd12 ## {Repeats: no}

block1916 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.840	no	no	0.39/0.39	23/23/1.00	0.0	0.0	2	0	1	0	18	6	5arm	1	nd	0.39	3	2	1	na	na

		reads	miRBase family seed
seed	-------------------UCCUUAC-----------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	------------------GTCCTTACAGCTTGTGGTAAATT--------------------------------------------------------	23	2
cbriggsae	agatgaagttttgtccgcGTCCTTACAGCTTGTGGTAAATTgttttgtagcaaagcgttttccccgttcttccaggtccatccacaaacatcgatct
	*************************************************************************************************
	-----------------------------------------------------------------------------------------------------------	NM_070458
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182297
cbriggsae	.((((....(((((......(((...((..((.((.(((.(((((((...))))))).))).))))..))...))).......))))))))).....	0.820 -15.42

cbriggsae

chromosome:chrIV:1140102:1140198:-1

Opposite_strand|Intronic_non-coding|NM_070458|Y73F8A.24 ## Same_strand|Intronic_non-coding|NM_182297|B0546.4 ## {Repeats: no}

block2814 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.254	no	no	0.50/0.57	21/23/1.00	0.0	0.3	7	0	1	0	5	-8	3arm_loop	20	nd	0.52	7	9	1	na	na

		reads	miRBase family seed
seed	---------------------------CCUUAGG--------------------	7	novel
seed	-------------------------------AGGUCGC----------------	1	novel
seed	------------------------------UAGGUCG-----------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------TCCTTAGGTCGCTGGTTCGAATC-----	23	5
	--------------------------TCCTTAGGTCGCTGGTTCGAAT------	22	2
	-----------------------------TTAGGTCGCTGGTTCGAATCCG---	22	1
	------------------------------TAGGTCGCTGGTTCGAATCCG---	21	1
cbriggsae	gcggaggactgtagagtcagtgggtaTCCTTAGGTCGCTGGTTCGAATCcgacg
	******************************************************
	----------------------------------------------------------------	NM_064152
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067049
	----------------------------------------------------------------	NM_001047648
	----------------------------------------------------------------	NM_001011120
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065151
	----------------------------------------------------------------	NM_075282
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001106865
	----------------------------------------------------------------	NM_072208
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075402
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075402
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065139
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_171091
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067241
	----------------------------------------------------------------	NM_067285
	----------------------------------------------------------------	NM_068002
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067755
	----------------------------------------------------------------	NM_067672
	----------------------------------------------------------------	NM_064726
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182297
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067597
	----------------------------------------------------------------	NM_001844
	----------------------------------------------------------------	NM_000090
	----------------------------------------------------------------	NM_001113224
	----------------------------------------------------------------	NM_201478
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067080
	----------------------------------------------------------------	NM_033150
	----------------------------------------------------------------	NM_031163
	----------------------------------------------------------------	NM_001027705
	----------------------------------------------------------------	NM_012929
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_131595
	----------------------------------------------------------------	NM_001081764
	----------------------------------------------------------------	NM_001090075
	----------------------------------------------------------------	NM_205107
	----------------------------------------------------------------	NM_001087258
	----------------------------------------------------------------	NM_001081764
	----------------------------------------------------------------	NM_198022
	----------------------------------------------------------------	NM_001113224
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_059821
	----------------------------------------------------------------	NM_131292
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075282
	----------------------------------------------------------------	NM_068122
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_032085
	----------------------------------------------------------------	NM_027770
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065139
	----------------------------------------------------------------	NM_181277
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067594
	----------------------------------------------------------------	NM_001113515
	----------------------------------------------------------------	NM_001001135
	----------------------------------------------------------------	NM_001001135
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001031625
	----------------------------------------------------------------	NM_001130548
	----------------------------------------------------------------	NM_007742
	----------------------------------------------------------------	NM_001083844
	----------------------------------------------------------------	NM_001100911
	----------------------------------------------------------------	NM_131292
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_005677
	----------------------------------------------------------------	NM_031163
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_032085
	----------------------------------------------------------------	NM_007742
	----------------------------------------------------------------	NM_053304
	----------------------------------------------------------------	NM_053304
	----------------------------------------------------------------	NM_053304
	----------------------------------------------------------------	NM_001011005
	----------------------------------------------------------------	NM_001087352
	----------------------------------------------------------------	NM_001087352
	----------------------------------------------------------------	NM_001105289
	----------------------------------------------------------------	NM_001081764
	----------------------------------------------------------------	NM_203889
	----------------------------------------------------------------	NM_001006951
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_136816
	----------------------------------------------------------------	NM_001034039
	----------------------------------------------------------------	NM_001090075
	----------------------------------------------------------------	NM_001079250
	----------------------------------------------------------------	NM_174520
	----------------------------------------------------------------	NM_001079250
	----------------------------------------------------------------	NM_203889
	----------------------------------------------------------------	NM_001003187
	----------------------------------------------------------------	NM_001087789
	----------------------------------------------------------------	NM_203889
	----------------------------------------------------------------	NM_001034039
	----------------------------------------------------------------	NM_001087352
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011005
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001034039
	----------------------------------------------------------------	NM_032085
	----------------------------------------------------------------	NM_009930
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080538
	----------------------------------------------------------------	NM_182968
	----------------------------------------------------------------	NM_007742
	----------------------------------------------------------------	NM_000090
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080544
	----------------------------------------------------------------	NM_001113224
	----------------------------------------------------------------	NM_000094
	----------------------------------------------------------------	NM_001113515
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000092
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000088
	----------------------------------------------------------------	NM_000088
	----------------------------------------------------------------	NM_012929
	----------------------------------------------------------------	NM_012929
	----------------------------------------------------------------	NM_001124177
	----------------------------------------------------------------	NM_001001135
cbriggsae	.((..(((.....((..((((((...........))))))..))...)))..))	1.000 -14.90

cbriggsae

chromosome:chrIV:13485218:13485271:1

block4454 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.603	no	no	0.64/0.64	22/22/1.00	0.0	0.0	1	0	1	0	6	23	5arm	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	-------CACCGGU----------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------GCACCGGTACATCCCAAGGGTC--------------------------------------------------------------------------------	22	1
cbriggsae	gtgcatGCACCGGTACATCCCAAGGGTCatcgcgaagagatgatggcaatgtttcattgagcctggttttcttcgacaataaagtggattgaggacatcggtttggac
	************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_153821
	----------------------------------------------------------------------------------------------------------------------	NM_125756
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_204793
	----------------------------------------------------------------------------------------------------------------------	NM_001016575
cbriggsae	((.((...((((((...((((((...((((..((((((((....(((((((...))))..)))....))))))))........)))).))).))).)))))).)).))	0.670 -27.10

cbriggsae

chromosome:chrX:6772901:6773008:-1

Same_strand|Intronic_non-coding|NM_153821|Prrx1 ## Opposite_strand|Intronic_coding|NM_125756|HEN3 ## {Repeats: no}

block3000 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.108	no	no	0.50/0.50	24/24/1.00	0.0	0.0	1	0	1	0	15	10	3arm	1	nd	0.25	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------UUGUCCG-------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------GTTGTCCGCCTTGAATTGTTCCTC---------------	24	1
cbriggsae	cgtcgttttttgccatttctcggaggaagtatttgtcgtcgataattccgttattcgtcaatcttctgattaacttGTTGTCCGCCTTGAATTGTTCCTCaaggttgttgatgac
	*******************************************************************************************************************
cbriggsae	.((((((....(((........((((((..(((((..((.((((((...((((...((((......))))))))..)))))).))..)))))..))))))..)))....))))))	0.870 -26.30

cbriggsae

chromosome:chrUn:1294731:1294845:-1

{Repeats: no}

block1395 [novel_Multihit_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.397	no	no	0.55/0.55	20/20/1.00	0.0	0.0	1	0	1	0	11	4	5arm	49	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	------------CGUUCGU------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------GCGTTCGTGGTGTAATGGTC------------------------------------------	20	1
cbriggsae	ggaaaccatccGCGTTCGTGGTGTAATGGTCagcatggatgccttccaagcattcgacgggggttcgattccc
	*************************************************************************
	-----------------------------------------------------------------------------------	NM_138944
	-----------------------------------------------------------------------------------	NM_199029
	-----------------------------------------------------------------------------------	NM_001087791
	-----------------------------------------------------------------------------------	NM_203889
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027397
	-----------------------------------------------------------------------------------	NM_121936
cbriggsae	((((...((((.((.(((.(((((..(((...(((....)))...))).)))))))))).))))....)))).	0.720 -21.40

cbriggsae

chromosome:chrIII:6237695:6237767:-1

Opposite_strand|Intronic_coding|NM_138944|Pou4f2 ## Opposite_strand|Intronic_non-coding|NM_199029|Zfp395 ## Same_strand|Intronic_coding|NM_001027397|rbf-1 ## {Repeats: no}

block3084 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.386	no	no	0.59/0.59	22/22/1.00	0.0	0.0	1	0	1	0	6	11	5arm	2	nd	0.36	4	1	1	na	na

		reads	miRBase family seed
seed	-------UUACGGG----------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------GTTACGGGACGACGTCTTGGTG--------------------------------------------------	22	1
cbriggsae	cgaattGTTACGGGACGACGTCTTGGTGagcgtttgaaggaacttttgaacttcgatctcttcgttttcttgcatttc
	******************************************************************************
	--------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_072718
cbriggsae	.(((.(((...((((.((((....((((((.(((..(((....)))..)))))).)))....)))).))))))).)))	0.990 -16.60

cbriggsae

chromosome:chrUn:3815610:3815687:-1

Opposite_strand|Boundary_non-coding|NM_072718|air-1 ## {Repeats: no}

block2364 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.157	no	no	0.50/0.63	21/27/0.90	0.0	0.3	7	0	1	0	13	-8	3arm	20	nd	0.52	7	10	1	na	na

		reads	miRBase family seed
seed	-------------------------------------CCUUAGG----------------------------	7	novel
seed	---------------------------------------------CGCUGGU--------------------	1	novel
seed	-----------------------------------------AGGUCGC------------------------	1	novel
seed	----------------------------------------UAGGUCG-------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------TCCTTAGGTCGCTGGTTCGAATC-------------	23	5
	------------------------------------TCCTTAGGTCGCTGGTTCGAAT--------------	22	2
	----------------------------------------TAGGTCGCTGGTTCGAATCCG-----------	21	1
	--------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA-	27	1
	---------------------------------------TTAGGTCGCTGGTTCGAATCCG-----------	22	1
cbriggsae	agttggtagagcggaggactgtagagtcagtgggtaTCCTTAGGTCGCTGGTTCGAATCcggctcgacggat
	************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_123965
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_024349
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008091
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_019034
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001016369
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001032772
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001040602
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001093711
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001095157
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199692
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001033835
	----------------------------------------------------------------------------------	NM_001047948
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_175092
	----------------------------------------------------------------------------------	NM_065286
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001123190
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001126828
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001010953
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001127285
cbriggsae	.(((.((.((((...(((.....((..((((((...........))))))..))...))).)))).)).)))	0.990 -21.50

cbriggsae

chromosome:chrIV:711573:711644:1

block1477 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.546	no	no	0.47/0.47	19/19/0.00	0.0	0.0	1	0	1	0	34	-1	5arm_loop	2	nd	0.37	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------AAGAGUA------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------GAAGAGTATGTGATTGGGC-------------------------------------------------------------------	19	1
cbriggsae	gcaatcgaatcgttagtgaacatggctggcataaGAAGAGTATGTGATTGGGCctgcaacttatttcgaaatttccaaccaaattttcttcgcttacagtcgtgtctggttctgtgagcg
	************************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001030661
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027534
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027535
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066897
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066606
cbriggsae	((.((.((((((.....((.((((((((......((((((....((.(((((.....................))))).))....)))))).....)))))))))))))))).))..)).	0.980 -27.90

cbriggsae

chromosome:chrIII:8774415:8774534:-1

Same_strand|Intronic_non-coding|NM_001030661|SETD1B ## Same_strand|Intronic_coding|NM_066606|lin-12 ## {Repeats: no}

block2463 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.692	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	8	17	5arm	1	nd	0.48	4	1	1	na	na

		reads	miRBase family seed
seed	---------UAUACUU------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------TTATACTTCCAGGGATACGAG-----------------------------------------------------------------------	21	1
cbriggsae	cgatacaaTTATACTTCCAGGGATACGAGattgtggtaatcgaagaatttaactcaatcattgctccaaaattctatatttccgaaaacagttgtttatc
	****************************************************************************************************
	--------------------------------------------------------------------------------------------------------------	NM_020714
cbriggsae	.(((((((((....(((..((((....((((((..(((((.((.((.......))..)))))))..)))...)))....)))))))...))))))..)))	0.950 -12.70

cbriggsae

chromosome:chrIV:2537545:2537644:1

Opposite_strand|Intronic_non-coding|NM_020714|ZNF490 ## {Repeats: no}

block5253 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.439	no	no	0.41/0.41	22/22/1.00	0.0	0.0	2	0	1	0	26	7	5arm	2	nd	0.32	4	2	1	na	na

		reads	miRBase family seed
seed	---------------------------AAUGGAU------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	--------------------------GAATGGATGAGGTTCTGGATAT----------------------------------------------------------------	22	2
cbriggsae	agcatcaattttttctaagggtttttGAATGGATGAGGTTCTGGATATtgatggcgtgatgaagtgggtaaattctccgatctattccaacgttcggaaaaagggaggagct
	****************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------	NM_001031326
cbriggsae	(((.((..(((((((..((.(((...((((((((..((....((((.(((...((........))...))))))).)).)))))))).))).))..)))))))....)))))	0.950 -23.70

cbriggsae

chromosome:chrX:19995093:19995204:1

Opposite_strand|Intronic_non-coding|NM_001031326|CLK2 ## {Repeats: no}

block1716 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.292	no	no	0.46/0.46	24/24/1.00	0.0	0.0	2	0	1	0	4	14	3arm	1	nd	0.17	2	2	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------------------AAUUGGU--------------------	2	miR-358
		len	cloning frequencies
			AF16
	------------------------------------------------------------------------------GAATTGGTTGGTCATCGTTCGAAG----	24	2
cbriggsae	aactatttctgaagacaatcaaactcaccgaactctcagttgctgaagctcgtcgaaatccattcgaggtccgtaattGAATTGGTTGGTCATCGTTCGAAGagtt
	**********************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087791
	--------------------------------------------------------------------------------------------------------------------	NM_001047975
	--------------------------------------------------------------------------------------------------------------------	NM_001858
	--------------------------------------------------------------------------------------------------------------------	NM_213264
	--------------------------------------------------------------------------------------------------------------------	NM_131292
	--------------------------------------------------------------------------------------------------------------------	NM_080680
	--------------------------------------------------------------------------------------------------------------------	NM_001845
	--------------------------------------------------------------------------------------------------------------------	NM_021881
	--------------------------------------------------------------------------------------------------------------------	NM_007739
	--------------------------------------------------------------------------------------------------------------------	NM_181277
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083336
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_176995
	--------------------------------------------------------------------------------------------------------------------	NM_001006951
	--------------------------------------------------------------------------------------------------------------------	NM_001081764
	--------------------------------------------------------------------------------------------------------------------	NM_001046199
	--------------------------------------------------------------------------------------------------------------------	NM_001005153
	--------------------------------------------------------------------------------------------------------------------	NM_001002980
	--------------------------------------------------------------------------------------------------------------------	NM_001014971
	--------------------------------------------------------------------------------------------------------------------	NM_204790
	--------------------------------------------------------------------------------------------------------------------	NM_001082666
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_079524
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_206442
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_206443
	--------------------------------------------------------------------------------------------------------------------	NM_212528
	--------------------------------------------------------------------------------------------------------------------	NM_201478
	--------------------------------------------------------------------------------------------------------------------	NM_182968
	--------------------------------------------------------------------------------------------------------------------	NM_033150
	--------------------------------------------------------------------------------------------------------------------	NM_080629
	--------------------------------------------------------------------------------------------------------------------	NM_000089
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_005381
	--------------------------------------------------------------------------------------------------------------------	NM_001107100
	--------------------------------------------------------------------------------------------------------------------	NM_000393
	--------------------------------------------------------------------------------------------------------------------	NM_080681
	--------------------------------------------------------------------------------------------------------------------	NM_005718
	--------------------------------------------------------------------------------------------------------------------	NM_004845
	--------------------------------------------------------------------------------------------------------------------	NM_080680
	--------------------------------------------------------------------------------------------------------------------	NM_001844
	--------------------------------------------------------------------------------------------------------------------	NM_080679
	--------------------------------------------------------------------------------------------------------------------	NM_001854
	--------------------------------------------------------------------------------------------------------------------	NM_212579
	--------------------------------------------------------------------------------------------------------------------	NM_080630
	--------------------------------------------------------------------------------------------------------------------	NM_007736
	--------------------------------------------------------------------------------------------------------------------	NM_001083844
	--------------------------------------------------------------------------------------------------------------------	NM_007738
	--------------------------------------------------------------------------------------------------------------------	NM_031366
	--------------------------------------------------------------------------------------------------------------------	NM_199214
	--------------------------------------------------------------------------------------------------------------------	NM_009926
	--------------------------------------------------------------------------------------------------------------------	NM_031362
	--------------------------------------------------------------------------------------------------------------------	NM_031365
	--------------------------------------------------------------------------------------------------------------------	NM_134452
	--------------------------------------------------------------------------------------------------------------------	NM_000092
	--------------------------------------------------------------------------------------------------------------------	NM_000091
	--------------------------------------------------------------------------------------------------------------------	NM_001024960
	--------------------------------------------------------------------------------------------------------------------	NM_001024959
	--------------------------------------------------------------------------------------------------------------------	NM_078485
	--------------------------------------------------------------------------------------------------------------------	NM_001851
	--------------------------------------------------------------------------------------------------------------------	NM_001079992
	--------------------------------------------------------------------------------------------------------------------	NM_001130548
cbriggsae	((((.((((.(((((..((((.....(((((....((((((((.((..((((............)))).)).)))))))).)))))))))..)).)))))))))))	0.460 -23.10

cbriggsae

chromosome:chrIII:6677067:6677172:1

block4498 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.425	no	no	0.47/0.47	19/19/0.00	0.0	0.0	1	0	1	0	3	17	5arm	1	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	----CCAGCUA----------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---TCCAGCTAGTGTGTGGTAA-----------------------------------------------------	19	1
cbriggsae	aatTCCAGCTAGTGTGTGGTAAaatggttttactcgtgtagatgacacgtgtggtatctcaaacttgggtaatta
	***************************************************************************
	-------------------------------------------------------------------------------------	NM_007789
	-------------------------------------------------------------------------------------	NM_001047210
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_076367
cbriggsae	((((((....(((.((.((((........((((.(((((.....))))).)))))))).)).)))..)).)))).	0.820 -14.50

cbriggsae

chromosome:chrX:9574709:9574783:-1

Opposite_strand|Intronic_non-coding|NM_007789|Ncan ## Same_strand|Intronic_coding|NM_076367|atg-16.1 ## {Repeats: no}

block3455 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.390	no	no	0.40/0.40	20/20/1.00	0.0	0.0	1	0	1	0	4	22	5arm	1	nd	0.40	2	1	1	na	na

		reads	miRBase family seed
seed	-----AUGGUCA----------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----TATGGTCATCAAGGGATATG----------------------------------------------------------------------------	20	1
cbriggsae	cgggTATGGTCATCAAGGGATATGgtcatgaagcgggtaagctttttcttaaattgcgctcccatttcatgttcatcatttcagtgctgcgtagaatccc
	****************************************************************************************************
cbriggsae	.(((..((..((.((..(((.(((..(((((((.(((...((..((.....))..))...))).)))))))..)))...)))..)).))..))....)))	0.930 -24.00

cbriggsae

chromosome:chrUn:3692468:3692567:1

{Repeats: no}

block3001 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.498	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	10	-4	5arm_loop_3arm	1	nd	0.40	4	1	1	na	na

		reads	miRBase family seed
seed	-----------CUCCAAC------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------TCTCCAACGGCAAGGATCTT------------------------------	20	1
cbriggsae	gtgagaaaggTCTCCAACGGCAAGGATCTTttcgtgttcaatgaggaggcaagaaggaac
	************************************************************
cbriggsae	.........((((((...((((.(((....))).))))......))))))..........	0.540 -11.20

cbriggsae

chromosome:chrUn:1308262:1308321:-1

{Repeats: no}

block3029 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.051	no	no	0.52/0.52	21/21/1.00	0.0	0.0	1	0	1	0	14	1	5arm	47	nd	0.00	0	1	1	na	na

		reads	miRBase family seed
seed	---------------UAAUGGU------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------GTAATGGTCAGCATGGATGCC-----------------------------------------------------------	21	1
cbriggsae	tgtgcgttcgtggtGTAATGGTCAGCATGGATGCCttccaagcgcaggtgattcgtgattgaccaattacaggtatagggctataaacgaccaa
	**********************************************************************************************
cbriggsae	((..((((..((((((((((((((((((((((((((.........)))).))))))).))))))).)))).........))))..))))..)).	0.950 -29.10

cbriggsae

chromosome:chrUn:1921511:1921604:-1

{Repeats: no}

block75 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.113	no	no	0.46/0.46	24/24/1.00	0.0	0.0	1	0	1	0	20	0	3arm	2	nd	0.25	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------AUUCGGA------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------GATTCGGATTGGTTTTGGTACACC--------------------	24	1
cbriggsae	cggccattcttttttttttttttggttttcaggaaatgtggatcaaacGATTCGGATTGGTTTTGGTACACCgattaaggagaaatgttgtc
	********************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_177366
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001069244
	------------------------------------------------------------------------------------------------------	NM_058481
	------------------------------------------------------------------------------------------------------	NM_014920
	------------------------------------------------------------------------------------------------------	NM_016513
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_059707
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010301
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_008139
cbriggsae	.(((.((...(((((((((..(((((..(((((((((.((((((....)))))).)))..))))))...)))))..))))))))).)).)))	0.990 -21.50

cbriggsae

chromosome:chrI:2324504:2324595:-1

Same_strand|Intronic_non-coding|NM_177366|Gpr157 ## Opposite_strand|Intronic_non-coding|NM_058481|ubc-3 ## {Repeats: no}

block607 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.213	no	no	0.56/0.56	18/18/0.00	0.0	0.0	1	0	1	0	9	1	5arm	1	nd	0.28	3	1	1	na	na

		reads	miRBase family seed
seed	----------GAUCAGC----------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------GGATCAGCAAGTCAGCGT------------------------------------	18	1
cbriggsae	gtctaaaccGGATCAGCAAGTCAGCGTgaagctcgaactgaacttgaacattcttgatgggct
	***************************************************************
	-------------------------------------------------------------------------	NM_012623
	-------------------------------------------------------------------------	NM_079000
	-------------------------------------------------------------------------	NM_057483
	-------------------------------------------------------------------------	NM_139783
	-------------------------------------------------------------------------	NM_001052679
	-------------------------------------------------------------------------	NM_102295
	-------------------------------------------------------------------------	NM_208702
	-------------------------------------------------------------------------	NM_141636
	-------------------------------------------------------------------------	NM_102566
	-------------------------------------------------------------------------	NM_133401
	-------------------------------------------------------------------------	NM_011076
	-------------------------------------------------------------------------	NM_011075
	-------------------------------------------------------------------------	NM_000927
	-------------------------------------------------------------------------	NM_001085278
cbriggsae	(((((....((((...((((((((..((.....))..)))).))))...))))....))))).	0.990 -15.00

cbriggsae

chromosome:chrII:3178052:3178114:-1

Opposite_strand|Intronic_coding|NM_012623|Abcb1b ## Opposite_strand|Intronic_non-coding|NM_102295|AT1G24510 ## {Repeats: no}

block1699 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.208	no	no	0.17/0.17	18/18/0.00	0.0	0.0	1	0	1	0	8	11	3arm	3	nd	0.39	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------UUGAUUG------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------TTTGATTGTAAGTTTTTT--------	18	1
cbriggsae	agttcgagatttcttcaagaactcaaaaccgtcaagaatggtatttggTTTGATTGTAAGTTTTTTtccttact
	**************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_030820
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001102156
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001022613
cbriggsae	(((..((((...((((((((((.(((((((((.....))))).))))))))..))).)))....))))...)))	0.500 -12.40

cbriggsae

chromosome:chrIII:5535559:5535632:1

Same_strand|Intronic_coding|NM_030820|COL21A1 ## {Repeats: no}

block2960 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.524	no	no	0.20/0.20	20/20/1.00	0.0	0.0	1	0	1	0	0	28	5arm	2	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	-ACUAAGA-----------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	TACTAAGATATTATTACTGA-----------------------------------------------------------------------------	20	1
cbriggsae	TACTAAGATATTATTACTGAtagaatttttagtttaatttagaatgtatcacttacaatgatagggtttaaaattctataattaagttattttttgt
	*************************************************************************************************
cbriggsae	.((.((((((...(((...((((((((((.........(((...((((.....)))).)))........))))))))))...)))..))))))..))	0.420 -11.53

cbriggsae

chromosome:chrM:13954:14050:-1

{Repeats: no}

block799 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.666	no	no	0.62/0.62	21/21/1.00	0.0	0.0	1	0	1	0	19	4	5arm	1	nd	0.24	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------CUGACGA----------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------GCTGACGATGCCTCCGAATCC---------------------------------------------	21	1
cbriggsae	cggcggtgtcttttccttcGCTGACGATGCCTCCGAATCCgcctcagagtgtggagattccatttggagcaccggcggtccgtcg
	*************************************************************************************
cbriggsae	((((((...........((((((....((.((((((((((((((...)).))))).......))))))))).)))))).))))))	0.490 -26.41

cbriggsae

chromosome:chrII:12112924:12113008:-1

{Repeats: no}

block3263 [novel_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.442	no	no	0.52/0.52	21/21/1.00	0.0	0.0	2	0	1	0	11	-4	5arm_loop_3arm	8	nd	0.24	4	2	1	na	na

		reads	miRBase family seed
seed	------------UCCGAUC------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	-----------GTCCGATCTGGCAAGTTAAGC-----------------------------------------	21	2
cbriggsae	cacgccatcccGTCCGATCTGGCAAGTTAAGCaacgttgagtccagttagtacttggatcggagacggcctgg
	*************************************************************************
cbriggsae	((.(((.((((((((((.((((((((((....))).)))...)))).......))))).))).)).))).)).	0.790 -20.40

cbriggsae

chromosome:chrUn:5165581:5165653:-1

{Repeats: no}

block4613 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.025	no	no	0.58/0.62	21/24/1.00	0.0	1.5	2	0	1	0	0	7	3arm	3	nd	0.09	1	2	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------GGGUUCG----------------	2	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------TGGGTTCGAACCCCACTCGTGCTA	24	1
	------------------------------------------------------TGGGTTCGAACCCCACTCGTG---	21	1
cbriggsae	atggccgagtggttaaggcgttggacttaagttccaatggtgggtaacaccgcgTGGGTTCGAACCCCACTCGTGCTA
	******************************************************************************
	----------------------------------------------------------------------------------------	NM_001099298
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_077585
cbriggsae	.(((((((((((....((..(((((((((.((......((((.....)))))).))))))))).))))))))).))))	0.430 -29.80

cbriggsae

chromosome:chrX:15119940:15120017:-1

Opposite_strand|Intronic_non-coding|NM_001099298|Scn2a1 ## Same_strand|Intronic_non-coding|NM_077585|Y62H9A.5 ## {Repeats: no}

block1030 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.088	no	no	0.58/0.58	19/19/0.00	0.0	0.0	2	0	1	0	14	26	3arm	1	nd	0.16	2	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------AACACCG-------------------------	2	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------------TAACACCGGCAGCTGGAGT--------------	19	2
cbriggsae	gcacgagaaggtgtagcagcagcggttggtgtttcaacagcacttggttgtcgagtggcaactggagttcgtggttgtccgaTAACACCGGCAGCTGGAGTtgggagaactggtg
	*******************************************************************************************************************
	-----------------------------------------------------------------------------------------------------------------------------	NM_001038232
	-----------------------------------------------------------------------------------------------------------------------------	NM_062121
	-----------------------------------------------------------------------------------------------------------------------------	NM_061791
	-----------------------------------------------------------------------------------------------------------------------------	NM_001038233
	-----------------------------------------------------------------------------------------------------------------------------	NM_061723
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001123511
	----------------------------------------------------------------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<	NM_064193
	----------------------------------------------------------------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<	NM_001129193
cbriggsae	.(((.((......((((..((((.(((((((((((.((((((((((((((((....)))))))).))).....)))))..)).))))))))).))))..))))......)).)))	0.790 -37.80

cbriggsae

chromosome:chrII:11232401:11232515:1

Opposite_strand|Intronic_coding|NM_001038232|bath-20 ## Same_strand|Intronic_non-coding|NM_001123511|rab7 ## Opposite_strand|Boundary_coding|NM_064193|pqn-87 ## {Repeats: no}

block156 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.444	no	no	0.46/0.46	26/26/0.00	0.0	0.0	2	0	1	0	23	1	5arm	1	nd	0.23	2	2	1	na	na

		reads	miRBase family seed
seed	------------------------AUUUGUC---------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	-----------------------GATTTGTCGAGCTTGCCTTTGGAATG---------------------------------------------------------------	26	2
cbriggsae	tagggaatattaaattttaggatGATTTGTCGAGCTTGCCTTTGGAATGtggaaggacggtcggtggcgaagttcatcaggagacgttgtgattgaattggaatttacttgg
	****************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------	NM_008855
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_176035
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205985
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_205986
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_102365
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001084127
	--------------------------------------------------------------------------------------------------------------------------	NM_068405
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001009899
	...........................................................................................................<<<<<<<<<<<<<<<	NM_059573
cbriggsae	((((((((.((((...(((.((((.((((..(((((((((.((((..(((......))).)))).))).))))))..))))...)))).))).....)))).)))).)))).	0.800 -19.80

cbriggsae

chromosome:chrI:8116870:8116981:-1

Opposite_strand|Intronic_non-coding|NM_008855|Prkcb1 ## Same_strand|Intronic_coding|NM_176035|nAcRalpha-34E ## Opposite_strand|Intronic_coding|NM_068405|ZK616.7 ## Same_strand|Intronic_non-coding|NM_001009899|KIAA2018 ## {Repeats: no}

block2568 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.162	no	no	0.28/0.28	18/18/0.00	0.0	0.0	1	0	1	0	8	10	3arm	1	nd	0.33	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------GACAAUG------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------------TGACAATGAGTTTAATTC--------	18	1
cbriggsae	atgagattttgtcttatctgtttctcataatctctaaagttagctaaatcttgtttcttgagTGACAATGAGTTTAATTCaaaactta
	****************************************************************************************
	--------------------------------------------------------------------------------------------------	NM_071866
	----------------------------------------------------------------------------------------------<<<<	NM_069268
cbriggsae	.((((.(((((..(((.......(((((..((.((.(((..(((........))).))).)).))..)))))..)))..)))))))))	0.480 -13.40

cbriggsae

chromosome:chrIV:4564740:4564827:1

Opposite_strand|Intronic_coding|NM_071866|F39G3.6 ## {Repeats: no}

block598 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.912	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	0	16	5arm	1	nd	0.47	4	1	1	na	na

		reads	miRBase family seed
seed	-CUCAUCG--------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	GCTCATCGTTCCAGTTAGG---------------------------------------------------------------	19	1
cbriggsae	GCTCATCGTTCCAGTTAGGctccgcccctttttgctccaaatacatccgctcaaaaaaggttttgtctcgtttcgaaacgcc
	**********************************************************************************
	--------------------------------------------------------------------------------------------	NM_131262
	--------------------------------------------------------------------------------------------	NM_011341
	--------------------------------------------------------------------------------------------	NM_007697
	--------------------------------------------------------------------------------------------	NM_000767
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_077434
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_171029
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_171855
cbriggsae	((...(((....((..((((......(((((((((.............))...)))))))....))))..)).)))...)).	0.830 -9.22

cbriggsae

chromosome:chrII:2594910:2594991:-1

Opposite_strand|Intronic_non-coding|NM_131262|myod1 ## Same_strand|Intronic_coding|NM_077434|ver-4 ## {Repeats: no}

block2191 [novel_lenNOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.095	no	no	0.32/0.32	19/19/0.00	0.0	0.0	1	0	1	0	28	5	3arm	1	nd	0.26	1	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------ACAAAAC---------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------TACAAAACTCAGTCCATAT----------------------------	19	1
cbriggsae	gcaaatagtaatttttctgtttcatgaggttctgaattttgaccagcttttttctcagagtTACAAAACTCAGTCCATATagaaaccttctcgaaaaattgaaaagtg
	************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066961
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064619
cbriggsae	.((.....(((((((((.((((((((.((..((((.(((((...((((((......)))))).))))).)))).)).))).)))))......))))))))).....))	0.920 -20.80

cbriggsae

chromosome:chrIV:8705069:8705176:-1

Same_strand|Intronic_non-coding|NM_066961|W09D10.4 ## {Repeats: no}

block3068 [novel_Multihit_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.461	no	no	0.55/0.55	22/22/1.00	0.0	0.0	1	0	1	0	2	17	5arm	15	nd	0.23	3	1	1	na	na

		reads	miRBase family seed
seed	---UUUCGAG----------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--GTTTCGAGTGTGTGTGCGCCTT--------------------------------------------------	22	1
cbriggsae	ccGTTTCGAGTGTGTGTGCGCCTTtaaccccttcgtggcgagacctcaacgatagggcgcgcttgcacgaaggg
	**************************************************************************
cbriggsae	((.(((...(((((.(((((((((........((((...((....)).)))).))))))))).)))))))).))	0.470 -24.60

cbriggsae

chromosome:chrUn:3464143:3464216:-1

{Repeats: no}

block1669 [novel_lenNOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.133	no	no	0.39/0.39	18/18/0.00	0.0	0.0	1	0	1	0	0	17	5arm	1	nd	0.44	4	1	1	na	na

		reads	miRBase family seed
seed	-ACACAGA----------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	GACACAGAAGAACTAAAG------------------------------------------------------------	18	1
cbriggsae	GACACAGAAGAACTAAAGactgtattttttcgtagaagaaggagattacgaaatcagaataggtagtatttcttatca
	******************************************************************************
	----------------------------------------------------------------------------------------	NM_001016781
	----------------------------------------------------------------------------------------	NM_001005609
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001043354
	----------------------------------------------------------------------------------------	NM_111431
	----------------------------------------------------------------------------------------	NM_001399
	----------------------------------------------------------------------------------------	NM_212504
	----------------------------------------------------------------------------------------	NM_007473
	----------------------------------------------------------------------------------------	NM_136816
	----------------------------------------------------------------------------------------	NM_131262
	----------------------------------------------------------------------------------------	NM_001014761
cbriggsae	((...(((((.((((....((((....((((((((..........)))))))).....)))).)))).)))))..)).	0.870 -13.40

cbriggsae

chromosome:chrIII:3941538:3941615:1

Opposite_strand|Intronic_non-coding|NM_001016781|LOC549535 ## Opposite_strand|Intronic_coding|NM_001005609|EDA ## Same_strand|Intronic_non-coding|NM_001043354|Rorb ## {Repeats: no}

block3110 [novel_lenNOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.527	no	no	0.24/0.24	25/25/0.00	0.0	0.0	1	0	1	0	25	-1	3arm	3	nd	0.16	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------UGCAAAU------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------TTGCAAATTAAATGGTTATGGTTTT-------------------------	25	1
cbriggsae	tagtactactagtttaaaaaattagaaatcatagtataattttagtatatttaaTTGCAAATTAAATGGTTATGGTTTTtagtaagataggataatatagtcta
	********************************************************************************************************
cbriggsae	(((.((((....((((....(((((((((((((((.((((((..(((........)))))))))....)))))))))))))))....))))......)))))))	0.490 -12.90

cbriggsae

chromosome:chrUn:4218433:4218536:-1

{Repeats: no}

block3753 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.843	no	no	0.35/0.35	20/20/1.00	0.0	0.0	1	0	1	0	21	-1	5arm_loop	1	nd	0.45	3	1	1	na	na

		reads	miRBase family seed
seed	----------------------UUGAAUU----------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------ATTGAATTCAAGGCAACATG----------------------------------	20	1
cbriggsae	tttttgagtttaaaatcgcgtATTGAATTCAAGGCAACATGatgatgagttagggaaaaagtatgtacacgaaag
	***************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070871
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_173095
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010595
	-------------------------------------------------------------------------------------	NM_026039
	-------------------------------------------------------------------------------------	NM_001093159
	-------------------------------------------------------------------------------------	NM_064380
	-------------------------------------------------------------------------------------	NM_173979
	-------------------------------------------------------------------------------------	NM_076658
cbriggsae	.(((((.((........(((((((...(((..(((..(((....))).)))..)))...))))))))).))))).	0.710 -8.00

cbriggsae

chromosome:chrV:8230998:8231072:-1

Same_strand|Intronic_coding|NM_070871|nhr-83 ## Opposite_strand|Intronic_non-coding|NM_026039|Med18 ## Opposite_strand|Intronic_coding|NM_001093159|MGC78950 ## {Repeats: no}

block2430 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.206	no	no	0.25/0.25	20/20/1.00	0.0	0.0	1	0	1	0	38	-1	5arm_loop	1	nd	0.45	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------AUUGAUU------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------TATTGATTGTAATGAAGTTC------------------------------------------------------------	20	1
cbriggsae	aaattttgatttaagatttttatttaatttttaggcgaTATTGATTGTAATGAAGTTCaaaggacatcaaaagagatatatggaaaaaaattgaacggtgaaaagaaattatagattt
	**********************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------------	NM_070351
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090906
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182271
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001102902
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_113688
cbriggsae	((((((((((((....((((((((((((((((.....(((((..((....(((.(((.....))).))).))..)))))......)))))))))...))))))).)))))).))))))	0.500 -15.40

cbriggsae

chromosome:chrIV:2018125:2018242:1

Opposite_strand|Intronic_non-coding|NM_070351|LLC1.2 ## Same_strand|Intronic_non-coding|NM_001090906|EEF1D ## Same_strand|Intronic_coding|NM_182271|K02E7.4 ## {Repeats: no}

block3802 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.188	no	no	0.72/0.72	25/25/0.00	0.0	0.0	1	0	1	0	5	3	3arm	4	nd	0.40	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------GACCGAG----------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------CGACCGAGCGTCCGTGCCAAGCGCT-----	25	1
cbriggsae	gatggagtgaagggaggagtcctgtgggtgttgctggcaacggCGACCGAGCGTCCGTGCCAAGCGCTacgtc
	*************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	-----------------------------------------------------------------------------------	NM_205579
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011821
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_102563
	-----------------------------------------------------------------------------------	NM_001016453
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134696
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001040230
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_072974
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079844
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182305
cbriggsae	((((.((((...((.(((....(((....(((((((....)))))))...))))))...))...)))).))))	0.490 -26.90

cbriggsae

chromosome:chrV:10855161:10855233:-1

Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_coding|NM_205579|myo3a ## Same_strand|Intronic_coding|NM_102563|AT1G27980 ## Opposite_strand|Intronic_non-coding|NM_001016453|spg4 ## {Repeats: no}

sblock32 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.099	no	no	0.36/0.64	18/28/0.40	0.0 0.8 0.3	0.0 0.2 0.0	1 8 24	0 0 0	1 1 1	0 0 0	3 15 2	5 -13 9	5arm 5arm_loop_3arm 3arm	7 7 7	nd nd nd	0.35 0.36 0.45	3 4 6	48	1	4	3

		reads	miRBase family seed
seed	-------------------------------------------UCCUGGA-------------	20	novel
seed	------------------------------------------AUCCUGG--------------	10	novel
seed	-----------------UACUUGG---------------------------------------	4	novel
seed	----------------------------------GCCUGGG----------------------	3	novel
seed	-------------------CUUGGAU-------------------------------------	2	novel
seed	----------------GUACUUG----------------------------------------	2	novel
seed	------------------ACUUGGA--------------------------------------	2	novel
seed	-----------------------------------------AAUCCUG---------------	1	novel
seed	----------------------------------------GAAUCCU----------------	1	novel
seed	-------------------------------------UGGGAAU-------------------	1	novel
seed	----UGAGUCC----------------------------------------------------	1	novel
seed	------------------------------------CUGGGAA--------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------ATCCTGGATGTTGTAAGCT--	19	17
	-----------------------------------------AATCCTGGATGTTGTAAGCT--	20	7
	----------------GTACTTGGATCGGAGACGGCCTGGG----------------------	25	4
	---------------------------------GGCCTGGGAATCCTGGATGTTGTAAGCT--	28	3
	------------------------------------------ATCCTGGATGTTGTAAGCTT-	20	2
	------------------ACTTGGATCGGAGACGGCCTGG-----------------------	22	2
	---------------AGTACTTGGATCGGAGACGGCCTGGG----------------------	26	2
	-----------------------------------CCTGGGAATCCTGGATGTTGTAAGCT--	26	1
	-----------------------------------------AATCCTGGATGTTGTAAG----	18	1
	----------------------------------------GAATCCTGGATGTTGTAAGCT--	21	1
	-----------------------------------------AATCCTGGATGTTGTAAGCTT-	21	1
	---TTGAGTCCAGTTAGTACTTG----------------------------------------	20	1
	---------------------------------------GGAATCCTGGATGTTGTAAGCT--	22	1
	-----------------TACTTGGATCGGAGACGGCCTGG-----------------------	23	1
	-----------------------------------------AATCCTGGATGTTGTAAGCTTT	22	1
	------------------------------------------ATCCTGGATGTTGTAAGCTTT	21	1
	-----------------TACTTGGATCGGAGACGGCCTG------------------------	22	1
	------------------------------------CTGGGAATCCTGGATGTTGTAAGCT--	25	1
cbriggsae	acgttgagtccagttagtacttggatcggagacggcctgggAATCCTGGATGTTGTAAGCTtt
	***************************************************************
	-------------------------------------------------------------------------	NM_001092591
	-------------------------------------------------------------------------	NM_177186
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001030661
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027534
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027535
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066897
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<....................................	NM_170601
cbriggsae	(((....((((((...((.(((((..((....))..))))).)).))))))..))).......	0.990 -17.60

cbriggsae

chromosome:chrIII:8640646:8640708:-1

block3473 [novel_Multihit]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.149	no	no	0.55/0.55	22/22/1.00	0.0	0.0	1	0	1	0	12	17	5arm	15	nd	0.18	2	1	1	na	na

		reads	miRBase family seed
seed	-------------UUUCGAG------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	------------GTTTCGAGTGTGTGTGCGCCTT----------------------------------------------------------------	22	1
cbriggsae	gccagtgaacccGTTTCGAGTGTGTGTGCGCCTTtaaccccttcgtggcgagacctcaacgatagggcgcgcttgcacgaaggaagagggaaaaggcg
	**************************************************************************************************
cbriggsae	(((......(((.((((..(((((.(((((((((........((((...((....)).)))).))))))))).)))))...))))..)))....))).	0.950 -35.30

cbriggsae

chromosome:chrUn:4113492:4113589:1

{Repeats: no}

block2474 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.784	no	no	0.39/0.39	18/18/0.00	0.0	0.0	2	0	1	0	34	-1	5arm_loop	2	nd	0.33	3	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------UCUCCCA------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	----------------------------------TTCTCCCAATGTACTTTG--------------------------------------------------------	18	2
cbriggsae	tgtcatattgtctttaaaaactttcccaaattagTTCTCCCAATGTACTTTGaaaggtaaaagataaaaaggcattttagaagggtttttttggagcgaaatcgggca
	************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------	NM_020714
	----------------------------------------------------------------------------------------------------------------------	NM_060105
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047451
cbriggsae	.(((...(((.(((((((((....(((.......((((...(((((.((((................)))))))))..)))))))..)))))))))))).....))).	0.610 -16.40

cbriggsae

chromosome:chrIV:2693632:2693739:1

Opposite_strand|Intronic_non-coding|NM_020714|ZNF490 ## Same_strand|Intronic_coding|NM_001047451|C27H2.2 ## {Repeats: no}

block3632 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.166	no	no	0.50/0.63	21/27/0.90	0.0	0.3	7	0	1	0	15	-8	3arm	20	nd	0.52	7	10	1	na	na

		reads	miRBase family seed
seed	-------------------------------------CCUUAGG------------------------------	7	novel
seed	---------------------------------------------CGCUGGU----------------------	1	novel
seed	-----------------------------------------AGGUCGC--------------------------	1	novel
seed	----------------------------------------UAGGUCG---------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------TCCTTAGGTCGCTGGTTCGAATC---------------	23	5
	------------------------------------TCCTTAGGTCGCTGGTTCGAAT----------------	22	2
	---------------------------------------TTAGGTCGCTGGTTCGAATCCG-------------	22	1
	----------------------------------------TAGGTCGCTGGTTCGAATCCG-------------	21	1
	--------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA---	27	1
cbriggsae	agttggtagagcggaggactgtagagtcagtgggtaTCCTTAGGTCGCTGGTTCGAATCcggctcgacggattt
	**************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_102641
	------------------------------------------------------------------------------------	NM_031035
	------------------------------------------------------------------------------------	NM_001106714
cbriggsae	((((.((.((((...(((.....((..((((((...........))))))..))...))).)))).)).)))).	0.990 -21.90

cbriggsae

chromosome:chrV:946977:947050:-1

Same_strand|Intronic_coding|NM_102641|AT1G29000 ## Opposite_strand|Intronic_non-coding|NM_031035|Gnai2 ## {Repeats: no}

block1129 [novel_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.122	no	no	0.57/0.57	21/21/1.00	0.0	0.0	1	0	1	0	19	-3	5arm_loop	1	nd	0.29	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------CUGGACG----------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------ACTGGACGCCTTGAGCTCATG---------------------------------------------	21	1
cbriggsae	gcttctttcagaaaaattgACTGGACGCCTTGAGCTCATGccagaagctcaacgatgcaagttcatcaatttgcccatctttgct
	*************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_053514
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_018362
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039354
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001033223
cbriggsae	((...........(((((((.(((((((.((((((((......)).))))))....))..))))))))))))..........)).	0.560 -18.90

cbriggsae

chromosome:chrII_random:244727:244811:-1

Same_strand|Intronic_coding|NM_053514|Lin7a ## Same_strand|Intronic_non-coding|NM_018362|LIN7C ## {Repeats: no}

block2526 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.052	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	32	3	3arm	1	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------UCAAGUU---------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------------------------------------------------TTCAAGTTCTAGGTCAACGAG--------------------------------	21	1
cbriggsae	actgaaattttcagtttcactcatttcatacatgaattgaaattattcaatcaccaaTTCAAGTTCTAGGTCAACGAGttctttgaaactgactcataaaatatttagtg
	**************************************************************************************************************
	------------------------------------------------------------------------------------------------------------------------	NM_001105717
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_198022
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_112886
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_079809
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_020066
cbriggsae	((((((((((((((((((((((((((...((.(((((((...............))))))).))...))))....)))).....))))))))......)))).)))))).	0.450 -18.36

cbriggsae

chromosome:chrIV:3363019:3363128:1

Opposite_strand|Intronic_non-coding|NM_001105717|Dpysl2 ## Same_strand|Intronic_non-coding|NM_198022|Tnrc6c ## Same_strand|Intronic_coding|NM_020066|FMN2 ## {Repeats: no}

block1542 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.413	no	no	0.48/0.48	25/25/0.00	0.0	0.0	1	0	1	0	22	-1	5arm_loop	2	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------UUUGGCU-------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------GTTTGGCTTAGGAGAGTGAACCACT--------------------------------------------------------	25	1
cbriggsae	tgtcttctgaagatgatgaggcGTTTGGCTTAGGAGAGTGAACCACTacttgtcctgttgtcctgtcctgaagatcagcgactcgatacttatcgaagatggc
	*******************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028998
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028999
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029004
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029003
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029002
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001029001
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039389
	-----------------------------------------------------------------------------------------------------------------	NM_135472
	-----------------------------------------------------------------------------------------------------------------	NM_164874
	-----------------------------------------------------------------------------------------------------------------	NM_205951
	-----------------------------------------------------------------------------------------------------------------	NM_205952
	-----------------------------------------------------------------------------------------------------------------	NM_205953
	-----------------------------------------------------------------------------------------------------------------	NM_001092606
	-----------------------------------------------------------------------------------------------------------------	NM_001004296
	-----------------------------------------------------------------------------------------------------------------	NM_064155
	-----------------------------------------------------------------------------------------------------------------	NM_001122952
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075505
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_028763
	-----------------------------------------------------------------------------------------------------------------	NM_065922
	-----------------------------------------------------------------------------------------------------------------	NM_010905
	-----------------------------------------------------------------------------------------------------------------	NM_065923
	-----------------------------------------------------------------------------------------------------------------	NM_068002
	-----------------------------------------------------------------------------------------------------------------	NM_067755
	-----------------------------------------------------------------------------------------------------------------	NM_067378
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001031045
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001102968
cbriggsae	.((((((..(((.((.((((.((.(((((((((((.((.((...((..........))..)))).))))).)).)))))).)))).)))))...))))))...	0.450 -25.80

cbriggsae

chromosome:chrIII:11517161:11517263:-1

Same_strand|Intronic_non-coding|NM_001028998|unc-62 ## Opposite_strand|Intronic_non-coding|NM_135472|nAcRalpha-30D ## Opposite_strand|Intronic_coding|NM_001004296|rdx ## {Repeats: no}

block3456 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.142	no	no	0.48/0.48	23/23/1.00	0.0	0.0	1	0	1	0	9	6	3arm	1	nd	0.30	2	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------AAGUUGG------------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------GAAGTTGGTGGACATCAGTTCGT---------	23	1
cbriggsae	ttgttcctggatcacgatctccttctcctttagctcctcctcgagcatGAAGTTGGTGGACATCAGTTCGTctacgacgg
	********************************************************************************
cbriggsae	.((.((.(((((.(((((.(((.((..(((((((((......)))).)))))..)).))).))).))..))))).)))).	0.920 -20.70

cbriggsae

chromosome:chrUn:3701895:3701974:1

{Repeats: no}

block1079 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.372	no	no	0.68/0.68	25/25/0.00	0.0	0.0	1	0	1	0	14	16	3arm	1	nd	0.36	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------CGGUGUU-------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------------------GCGGTGTTAGCGACGAAGCGAGCGG--------------	25	1
cbriggsae	gctggtacggcgttcctgacttccgaagacgaatctcgctgcgaatttttgacctatcattctgataggtatctccagaGCGGTGTTAGCGACGAAGCGAGCGGacgtcacggcctgt
	**********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001030387
	--------------------------------------------------------------------------------------------------------------------------------	NM_062091
cbriggsae	((((....(((((((((..((((......((.....((((((.........(((((((.....))))))).........))))))....))..))))..)).))))))).))))....	0.490 -37.47

cbriggsae

chromosome:chrII:13134955:13135072:1

Same_strand|Intronic_non-coding|NM_001030387|ARIH1 ## Opposite_strand|Intronic_coding|NM_062091|F02E11.2 ## {Repeats: no}

block4826 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.899	no	no	0.37/0.37	19/19/0.00	0.0	0.0	1	0	1	0	28	6	5arm	2	nd	0.32	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------UUUUUGA----------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------GTTTTTGAGTAGTGATGCT-----------------------------------------------------------------	19	1
cbriggsae	tctgaacctccatgattctaaagtttacGTTTTTGAGTAGTGATGCTttccggtccctgaaaaaaataacgttctcgaaattccgtttaaatgtgcccctcgaggagttgag
	****************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047939
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001013793
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001094367
	--------------------------------------------------------------------------------------------------------------------------	NM_001053012
	--------------------------------------------------------------------------------------------------------------------------	NM_001073374
cbriggsae	.((.((.((((.(((.......(((((((.(((((((..((.((..(((.(((...))).)))..)).))...)))))))...)))..)))).......))).)))))).))	0.950 -17.54

cbriggsae

chromosome:chrX:2238185:2238296:1

Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_coding|NM_001047939|LOC499407 ## Opposite_strand|Intronic_coding|NM_001053012|Os02g0258900 ## {Repeats: no}

block1037 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.454	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	21	14	3arm	1	nd	0.24	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------GCAAAAG----------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------AGCAAAAGCATTCTTCCGAGG---------------------	21	1
cbriggsae	gttgtttctgaatcacctccggcttcttttggtacgaatttttgttctggttattctcatttgtattcttcttgtgAGCAAAAGCATTCTTCCGAGGgggcatggtttctggaaagga
	**********************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------------	NM_001039389
cbriggsae	.((.((((((((..(((....((..((.((((...((((((((((((.((.(((........))).....))...))))))))..))))..))))))..))..)))))).))))).))	0.970 -25.50

cbriggsae

chromosome:chrII:11713235:11713352:1

Opposite_strand|Intronic_non-coding|NM_001039389|Wdr37 ## {Repeats: no}

block2936 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.960	no	no	0.30/0.42	19/23/0.67	0.3	1.7	3	0	1	0	14	11	5arm	3	nd	0.35	2	3	1	na	na

		reads	miRBase family seed
seed	----------------AUCAAAG-----------------------------------------------------------------------------	2	novel
seed	---------------AAUCAAA------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---------------AATCAAAGGGTTCTAAGGATTAA--------------------------------------------------------------	23	2
	--------------CAATCAAAGGGTTCTAAGG-------------------------------------------------------------------	19	1
cbriggsae	gtatgtttgacttcCAATCAAAGGGTTCTAAGGATTAAtaaataatttttttcaaggttataatttattgtttcaacatagtttatttgctagttacatg
	****************************************************************************************************
cbriggsae	.(((((..((((..(((..(((..(((..((.(((.(((..((((((((....)))))))).))).))).))..)))....)))..)))..)))))))))	0.470 -9.80

cbriggsae

chromosome:chrM:4159:4258:-1

{Repeats: no}

block2804 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.152	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	10	25	5arm	1	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	-----------AUUUGAG------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------GATTTGAGTTTGGGCGGTATT-----------------------------------------------------------------------------------------	21	1
cbriggsae	gttgacttttGATTTGAGTTTGGGCGGTATTgatttctccgtggataaagttttgaatggctcggacagatgacatcatttcggtgaagttagcgtcttttcttgaatcgaacgtgtagc
	************************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001106865
	----------------------------------------------------------------------------------------------------------------------------------	NM_064726
	----------------------------------------------------------------------------------------------------------------------------------	NM_069121
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_073485
	----------------------------------------------------------------------------------------------------------------------------------	NM_001026518
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_073512
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_073487
	----------------------------------------------------------------------------------------------------------------------------------	NM_000090
	----------------------------------------------------------------------------------------------------------------------------------	NM_001113224
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067159
	----------------------------------------------------------------------------------------------------------------------------------	NM_031163
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007733
	----------------------------------------------------------------------------------------------------------------------------------	NM_012929
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_131595
	----------------------------------------------------------------------------------------------------------------------------------	NM_001087220
	----------------------------------------------------------------------------------------------------------------------------------	NM_001088088
	----------------------------------------------------------------------------------------------------------------------------------	NM_200495
	----------------------------------------------------------------------------------------------------------------------------------	NM_001081764
	----------------------------------------------------------------------------------------------------------------------------------	NM_001090075
	----------------------------------------------------------------------------------------------------------------------------------	NM_205107
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001005153
	----------------------------------------------------------------------------------------------------------------------------------	NM_067074
	----------------------------------------------------------------------------------------------------------------------------------	NM_131292
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075282
	----------------------------------------------------------------------------------------------------------------------------------	NM_068122
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_032085
	----------------------------------------------------------------------------------------------------------------------------------	NM_027770
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067160
	----------------------------------------------------------------------------------------------------------------------------------	NM_181277
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068002
	----------------------------------------------------------------------------------------------------------------------------------	NM_001087813
	----------------------------------------------------------------------------------------------------------------------------------	NM_001113515
	----------------------------------------------------------------------------------------------------------------------------------	NM_001001135
	----------------------------------------------------------------------------------------------------------------------------------	NM_001130548
cbriggsae	((((((.(((((((..((...(((((...((((((((.(((..(((...(((((((.....)))...))))...)))....))).)))))))))))))...))..))))))).)).))))	0.490 -31.20

cbriggsae

chromosome:chrIV:13245923:13246042:1

Same_strand|Intronic_non-coding|NM_001106865|Ctdspl ## Opposite_strand|Intronic_non-coding|NM_064726|H10E21.1 ## Opposite_strand|Intronic_coding|NM_069121|grsp-2 ## Same_strand|Intronic_coding|NM_073485|collagen ## {Repeats: no}

block2470 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.686	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	10	20	5arm	1	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	-----------UCCGAUG-----------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------TTCCGATGGAATACTAGGTGG----------------------------------------------------------------------	21	1
cbriggsae	ggctcatcgcTTCCGATGGAATACTAGGTGGactcaattgctagagtgtgcgttttgctccgactctgtttcgatagctaccgtactccttcagtgaccgc
	*****************************************************************************************************
	---------------------------------------------------------------------------------------------------------------	NM_020714
	---------------------------------------------------------------------------------------------------------------	NM_060105
cbriggsae	((....(((((...((.(((.(((..(((((.((..((((.((((((..((.....))....))))))...)))))))))))))).))).)))))))))..	0.950 -24.20

cbriggsae

chromosome:chrIV:2645901:2646001:1

Opposite_strand|Intronic_non-coding|NM_020714|ZNF490 ## {Repeats: no}

block3609 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.046	no	no	0.43/0.43	23/23/1.00	0.0	0.0	1	0	1	0	6	13	3arm	1	nd	0.43	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------AAGCAUA---------------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------------------GAAGCATACATCCAAAATGGTCC------	23	1
cbriggsae	ggctgttctaattggcacgacagatgcgacataaagtcaatcgttcaaaaaagttgagattgactcGAAGCATACATCCAAAATGGTCCaagccg
	***********************************************************************************************
cbriggsae	(((((..(((.((((........((((.......((((((((..((((.....))))))))))))....))))....))))..)))..)).))).	0.940 -23.60

cbriggsae

chromosome:chrUn:6919709:6919803:1

{Repeats: no}

block1499 [novel_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.026	no	no	0.29/0.29	21/21/1.00	0.0	0.0	1	0	1	0	19	15	3arm	12	nd	0.43	5	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AUAUGAU--------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------TATATGATTTTTGGAACCTAG-------------------	21	1
cbriggsae	tagctaagatcaaagtgtagtatctgttcttatcgtattaacctacggtatgcactcgaatgagtgtaataaaggtTATATGATTTTTGGAACCTAGgaaagactcggggcttgct
	********************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001022613
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009322
	------------------------------------------------------------------------------------------------------------------------------	NM_065267
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199029
	------------------------------------------------------------------------------------------------------------------------------	NM_020180
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_057345
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_169733
	------------------------------------------------------------------------------------------------------------------------------	NM_204893
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_199449
	------------------------------------------------------------------------------------------------------------------------------	NM_153693
	------------------------------------------------------------------------------------------------------------------------------	NM_133991
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_009517
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001109884
	------------------------------------------------------------------------------------------------------------------------------	NM_001025087
	------------------------------------------------------------------------------------------------------------------------------	NM_001025088
	------------------------------------------------------------------------------------------------------------------------------	NM_001025089
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001128181
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_027712
cbriggsae	.(((.(((.((..(((.........(((((.((((((.((((((...((.(((((((....)))))))))..))))))))))))....))))).........)))..)).))))))	0.900 -29.47

cbriggsae

chromosome:chrIII:9783456:9783571:-1

Same_strand|Intronic_coding|NM_001022613|SPBC215.13 ## Same_strand|Intronic_non-coding|NM_009322|Tbr1 ## Opposite_strand|Intronic_non-coding|NM_065267|R148.2 ## {Repeats: no}

block1813 [novel_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.132	no	no	0.50/0.50	24/24/1.00	0.0	0.0	1	0	1	0	2	0	3arm	1	nd	0.25	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------UUAAUGC------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------GTTAATGCTGACGCAACTTGGAGG--	24	1
cbriggsae	ttttctaaaaatgtcaaaaaacattcgctcacctGTTAATGCTGACGCAACTTGGAGGaa
	************************************************************
	----------------------------------------------------------------------	NM_001028998
	----------------------------------------------------------------------	NM_001028999
	----------------------------------------------------------------------	NM_001029004
	----------------------------------------------------------------------	NM_001029003
	----------------------------------------------------------------------	NM_001029002
	----------------------------------------------------------------------	NM_001029001
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_064155
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122952
	----------------------------------------------------------------------	NM_028763
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065922
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010905
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065923
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_068002
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065190
	----------------------------------------------------------------------	NM_067159
	----------------------------------------------------------------------	NM_175692
	----------------------------------------------------------------------	NM_061965
	----------------------------------------------------------------------	NM_061817
	----------------------------------------------------------------------	NM_075459
	----------------------------------------------------------------------	NM_067160
	----------------------------------------------------------------------	NM_067659
cbriggsae	((((((((...(((((.....((((.((......)).)))).)))))....)))))))).	0.860 -9.90

cbriggsae

chromosome:chrIII:11299660:11299719:1

Opposite_strand|Intronic_non-coding|NM_001028998|unc-62 ## Same_strand|Intronic_non-coding|NM_064155|Y17G7B.3 ## Same_strand|Intronic_coding|NM_065922|C05D10.4 ## Opposite_strand|Intronic_coding|NM_067659|Y104H12BL.1 ## {Repeats: no}

block6 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.338	no	no	0.50/0.50	22/22/1.00	0.0	0.0	2	0	1	0	12	0	5arm	3	nd	0.36	4	2	1	na	na

		reads	miRBase family seed
seed	-------------UAUCCCA--------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	------------GTATCCCAAGTGTCTCTTACGG------------------------------------------	22	2
cbriggsae	gcattgggaccaGTATCCCAAGTGTCTCTTACGGttccaccagttttatcggggcgaggctactgagaccaatagc
	****************************************************************************
	--------------------------------------------------------------------------------------	NM_001011629
	--------------------------------------------------------------------------------------	NM_001051257
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_026191
	--------------------------------------------------------------------------------------	NM_067594
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_184109
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_184109
cbriggsae	(((((((...(((((.((....((((((..((((.....)).))......)))))).)).)))))...))))).))	0.740 -20.30

cbriggsae

chromosome:chrI:417042:417117:-1

block394 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.211	no	no	0.35/0.35	20/20/1.00	0.0	0.0	1	0	1	0	2	3	5arm	1	nd	0.35	4	1	1	na	na

		reads	miRBase family seed
seed	---ACAACAC------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--AACAACACAAGAGAACACTT------------------------------------------	20	1
cbriggsae	caAACAACACAAGAGAACACTTgccaatgtttatgagaggtaaaacattttctgaaatttgttt
	****************************************************************
	--------------------------------------------------------------------------	NM_001030661
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067080
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_175441
cbriggsae	.((((((....((((((...(((((.............)))))....)))))).....))))))	0.940 -9.22

cbriggsae

chromosome:chrI:9428668:9428731:1

Opposite_strand|Intronic_non-coding|NM_001030661|SETD1B ## Same_strand|Intronic_coding|NM_067080|Y66D12A.21 ## Same_strand|Intronic_non-coding|NM_175441|Mylk3 ## {Repeats: no}

block4134 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.545	no	no	0.55/0.55	20/20/1.00	0.0	0.0	2	0	1	0	12	4	3arm	1	nd	0.45	4	2	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------UAGAAGA------------------------	2	novel
		len	cloning frequencies
			AF16
	------------------------------------------------GTAGAAGAACTGGGTCTCGG------------	20	2
cbriggsae	aatctagaactcacattatgatccatcggttgactaggtcccacatcgGTAGAAGAACTGGGTCTCGGagtatctcgata
	********************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001126434
	------------------------------------------------------------------------------------------	NM_001022613
	------------------------------------------------------------------------------------------	NM_001028773
	------------------------------------------------------------------------------------------	NM_001027854
	------------------------------------------------------------------------------------------	NM_074150
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001113262
	------------------------------------------------------------------------------------------	NM_026039
	------------------------------------------------------------------------------------------	NM_175692
	------------------------------------------------------------------------------------------	NM_136816
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001113262
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001113262
cbriggsae	.(((.(((((((.......((((((((.....(((.(((.....))))))....))..))))))...)))).))).))).	0.480 -15.70

cbriggsae

chromosome:chrV:11978712:11978791:1

Same_strand|Intronic_non-coding|NM_001126434|LOC570148 ## Opposite_strand|Intronic_coding|NM_001022613|SPBC215.13 ## Same_strand|Intronic_coding|NM_001113262|Fib-h ## Opposite_strand|Intronic_non-coding|NM_026039|Med18 ## {Repeats: no}

block1112 [novel_lenNOK_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.099	no	no	0.72/0.72	25/25/0.00	0.0	0.0	1	0	1	0	3	22	5arm	4	nd	0.40	3	1	1	na	na

		reads	miRBase family seed
seed	----GACCGAG------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	---CGACCGAGCGTCCGTGCCAAGCGCT-------------------------------------------------------------------------	25	1
cbriggsae	cggCGACCGAGCGTCCGTGCCAAGCGCTgcgtcgctaggggtctccggtcggaaggctggcggtcccgggcgcataaggagtggtgcacggctcagggccg
	*****************************************************************************************************
cbriggsae	((((..((((((...(((((...((.((..((((((.((((((.((((((....)))))).)))))).)))).))..)).))...))))))))).))))))	0.980 -49.90

cbriggsae

chromosome:chrII_random:14532:14632:-1

{Repeats: no}

block3240 [novel_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.442	no	no	0.52/0.52	21/21/1.00	0.0	0.0	2	0	1	0	11	-4	5arm_loop_3arm	8	nd	0.24	4	2	1	na	na

		reads	miRBase family seed
seed	------------UCCGAUC------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	-----------GTCCGATCTGGCAAGTTAAGC-----------------------------------------	21	2
cbriggsae	cacgccatcccGTCCGATCTGGCAAGTTAAGCaacgttgagtccagttagtacttggatcggagacggcctgg
	*************************************************************************
cbriggsae	((.(((.((((((((((.((((((((((....))).)))...)))).......))))).))).)).))).)).	0.790 -20.40

cbriggsae

chromosome:chrUn:4856972:4857044:-1

{Repeats: no}

block2867 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.085	no	no	0.46/0.46	26/26/0.00	0.0	0.0	1	0	1	0	8	3	3arm	1	nd	0.31	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------CAUUGAU--------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------GCATTGATCAGCCAGTTGAGTGAATG--------	26	1
cbriggsae	cgttccgcttttttgccactacatatggtttgatctgggttacggtagttGCATTGATCAGCCAGTTGAGTGAATGaatggaat
	************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075117
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_061879
	----------------------------------------------------------------------------------------------	NM_067650
cbriggsae	.((((((.(((.....((((.((..(((.((((((...((.((....)).))...)))))))))..))))))...)))))))))	0.930 -22.70

cbriggsae

chromosome:chrIV_random:166130:166213:-1

Same_strand|Intronic_non-coding|NM_075117|Y59A8B.22 ## Opposite_strand|Intronic_non-coding|NM_067650|Y104H12D.3 ## {Repeats: no}

block3532 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.124	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	32	1	5arm	1	nd	0.33	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------UGUGUGU-------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------GTGTGTGTGTGTGTGTTAAAA------------------------------------------------------------	21	1
cbriggsae	acaatagatacttctaaaattttcaattcattGTGTGTGTGTGTGTGTTAAAAttatctcatattttttattgctgcgggtatcttgaaatgaataattccggtatttattgt
	*****************************************************************************************************************
cbriggsae	((((((((((((.........((((.((((..(((..((((.(((....(((((........)))))....)))))))..)))..)))).)))).......))))))))))))	0.990 -21.19

cbriggsae

chromosome:chrUn:4866578:4866690:1

{Repeats: no}

block1696 [novel_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.184	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	13	-2	3arm_loop	1	nd	0.33	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------CUGCAGU--------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------GCTGCAGTTGATTTTCTGGTT-------------	21	1
cbriggsae	tctgatgtaattatcaagaacatctcctccactttctttcGCTGCAGTTGATTTTCTGGTTtctgaattcagaa
	**************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066813
	------------------------------------------------------------------------------------	NM_127796
	------------------------------------------------------------------------------------	NM_134696
	------------------------------------------------------------------------------------	NM_134696
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001077541
	------------------------------------------------------------------------------------	NM_018785
	------------------------------------------------------------------------------------	NM_012760
	------------------------------------------------------------------------------------	NM_026275
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001082235
	------------------------------------------------------------------------------------	NM_001111819
	<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_066771
cbriggsae	(((((.......(((.((((.(((..((.((...........)).))..))).)))))))........))))).	0.840 -10.86

cbriggsae

chromosome:chrIII:5116872:5116945:1

block4007 [novel_lenNOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.594	no	no	0.42/0.42	19/19/0.00	0.0	0.0	1	0	1	0	18	2	3arm	1	nd	0.21	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------UCAAGAC-----------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------ATCAAGACTCCTCCAAATC------------------	19	1
cbriggsae	tgcagttccattttttgattttttttgggtttttttcagacagcacacgcATCAAGACTCCTCCAAATCaaaagaataaggggtggt
	***************************************************************************************
	-------------------------------------------------------------------------------------------------	NM_007590
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_021252
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001075499
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031408
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001129754
	-------------<<<<<<<<<<<<<<<<<<<<<---------------------------------------------------------------	NM_070985
	-------------------------------------------------------------------------------------------------	NM_001085355
	-------------------------------------------------------------------------------------------------	NM_001126147
cbriggsae	.((..((((.(((((((((((.....(((((((.....((..((....)).)))))))))....)))))))))))....))))..))	0.580 -14.40

cbriggsae

chromosome:chrV:3630497:3630583:1

Opposite_strand|Intronic_non-coding|NM_007590|Calm3 ## Same_strand|Intronic_coding|NM_021252|RAB18 ## Same_strand|Intronic_non-coding|NM_031408|Gigyf1 ## {Repeats: no}

block2448 [novel_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.497	no	no	0.40/0.40	20/20/1.00	0.0	0.0	2	0	1	0	3	25	3arm	1	nd	0.25	4	2	1	na	na

		reads	miRBase family seed
seed	----------------------------------------------------------------------------------------UCCUCUC---------------	2	novel
		len	cloning frequencies
			AF16
	---------------------------------------------------------------------------------------TTCCTCTCTGATCGTTATGT---	20	2
cbriggsae	atacaggtggtagattaaaaatagggtgaacctgaaaatcacagtttcattgacatcataaaatgaaggttttgaaaggattcttagTTCCTCTCTGATCGTTATGTatc
	**************************************************************************************************************
cbriggsae	(((((.......(((((.....((((.(((.((((.((((....(((((..(((.((((...))))..))).))))).)))).))))))))))).)))))....))))).	0.790 -19.30

cbriggsae

chromosome:chrIV:2360970:2361079:1

{Repeats: no}

block1193 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.107	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	29	1	3arm	1	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------AUUCCAA------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------------GATTCCAAGGCTTACACAGGT-----------------------------	21	1
cbriggsae	gggtcttgtagcccgctggcttctcgttctcctggtctttggtaccttcatctttaGATTCCAAGGCTTACACAGGTgattgcttttcagactggccgatagatcc
	**********************************************************************************************************
cbriggsae	((((((....(((..((((.....((.((.((((((((((((...((........))...))))))...)).)))).)).))....))))...)))....))))))	0.990 -28.90

cbriggsae

chromosome:chrII_random:2250345:2250450:-1

{Repeats: no}

block2064 [novel_lenNOK_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.320	no	no	0.37/0.37	19/19/0.00	0.0	0.0	1	0	1	0	13	-2	3arm_loop	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------ACCGAAA------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------TACCGAAAGGAAGGAATTT-------------	19	1
cbriggsae	tcactatttcgtcttctactgaaattaattcctgggataaTACCGAAAGGAAGGAATTTagattttgtgtga
	************************************************************************
	----------------------------------------------------------------------------------	NM_125682
	----------------------------------------------------------------------------------	NM_001067238
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_016802
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_012749
cbriggsae	((((.((...((((.......(((((..(((((.((......))...)))))..)))))))))...))))))	0.540 -12.21

cbriggsae

chromosome:chrIV:3539711:3539782:-1

Opposite_strand|Intronic_coding|NM_125682|ARAC10/ATRAC10/ATROP11 ## Same_strand|Intronic_non-coding|NM_016802|Rhoa ## Same_strand|Intronic_coding|NM_012749|Ncl ## {Repeats: no}

block1979 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.014	no	no	0.45/0.45	20/20/1.00	0.0	0.0	2	0	1	0	3	31	3arm	1	nd	0.05	1	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------------GUGAAGU---------------	2	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------------------TGTGAAGTGGTTTAGAGGAG---	20	2
cbriggsae	ttctgttccatctataccacccttcattcgaataaaaatttcagtttcacagcgtttgcttcagaatttttgaatttttaaaactcatTGTGAAGTGGTTTAGAGGAGaga
	***************************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070351
	-------------------------------------------------------------------------------------------------------------------------	NM_001090906
	-------------------------------------------------------------------------------------------------------------------------	NM_182271
	-------------------------------------------------------------------------------------------------------------------------	NM_001102902
	-------------------------------------------------------------------------------------------------------------------------	NM_113688
cbriggsae	.(((.((((.((((.(((((..(((((..((.((((((.(((((.(((..(((....)))...)))...)))))))))))....))...)))))))))).)))))))))))	0.950 -26.10

cbriggsae

chromosome:chrIV:2034546:2034656:-1

Same_strand|Intronic_non-coding|NM_070351|LLC1.2 ## Opposite_strand|Intronic_non-coding|NM_001090906|EEF1D ## Opposite_strand|Intronic_coding|NM_182271|K02E7.4 ## {Repeats: no}

block3937 [novel_lenNOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.382	no	no	0.17/0.17	18/18/0.00	0.0	0.0	1	0	1	0	29	3	5arm	3	nd	0.28	4	1	1	na	na

		reads	miRBase family seed
seed	------------------------------UUGAUUG----------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------TTTGATTGTAAGTTTTTT------------------------------------------------------------	18	1
cbriggsae	ggtttctattggttcgcacttatttcttgTTTGATTGTAAGTTTTTTtaaagattcaaagcattaattaaaactttcagataagtattttcgggtctactgtaaact
	***********************************************************************************************************
	---------------------------------------------------------------------------------------------------------------------	NM_001089210
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001103783
	....................................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	NM_001028806
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001015473
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110930
	..............................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	NM_074025
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_026172
cbriggsae	(((((.((..((..((.........(((((((((....(((((((.((((............))))..))))))))))))))))......))..))...)).)))))	0.980 -14.96

cbriggsae

chromosome:chrV:235674:235780:1

Opposite_strand|Intronic_non-coding|NM_001089210|LOC398649 ## Same_strand|Intronic_coding|NM_001103783|CG34220 ## Same_strand|Intronic_non-coding|NM_001015473|scro ## {Repeats: no}

block4876 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.658	no	no	0.44/0.44	18/18/0.00	0.0	0.0	1	0	1	0	23	10	3arm	2	nd	0.39	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------UCAUACA---------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------GTCATACAAACCGTCAAG-----------------------	18	1
cbriggsae	gaggccaagaaaagttgtaaagaaagcgtcgacatgtattataaacgccaatattatcatgtagtcggtgaagagcGTCATACAAACCGTCAAGcgctgaaaataaataattgcttc
	*********************************************************************************************************************
	-------------------------------------------------------------------------------------------------------------------------------	NM_007496
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001080396
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007736
	-------------------------------------------------------------------------------------------------------------------------------	NM_001090075
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001087789
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001079250
	-------------------------------------------------------------------------------------------------------------------------------	NM_008591
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_030706
cbriggsae	(((((.......((((((......(((((.(((.(((((.....((((.....(((((........)))))...)))).)))))....)))..)))))........)))))))))))	0.580 -18.85

cbriggsae

chromosome:chrX:5706302:5706418:1

Opposite_strand|Intronic_non-coding|NM_007496|Zfhx3 ## Same_strand|Intronic_non-coding|NM_001080396|FAM155A ## Same_strand|Intronic_coding|NM_007736|Col4a5 ## Opposite_strand|Intronic_coding|NM_001090075|MGC69046 ## {Repeats: no}

block3865 [novel_shortStem_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.306	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	0	17	3arm	2	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------AAUAGCA------------	1	novel
		len	cloning frequencies
			AF16
	------------------------------------------------------------CAATAGCAGTCTGGGCATCT	20	1
cbriggsae	ggaaccgagatttcattgaatccagagaacggaagccttttgtggtgttccgatagtagtCAATAGCAGTCTGGGCATCT
	********************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_074329
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001046690
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_074820
	------------------------------------------------------------------------------------------	NM_001129524
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001061126
cbriggsae	(((.((.(((((..(((((..........((((((((......))).))))).......)))))...))))).))..)))	0.640 -18.73

cbriggsae

chromosome:chrV:13525888:13525967:-1

Same_strand|Intronic_coding|NM_074329|srj-27 ## Opposite_strand|Intronic_coding|NM_001129524|T03E6.9 ## Same_strand|Intronic_non-coding|NM_001061126|Os05g0138300 ## {Repeats: no}

block4437 [novel_lenNOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.099	no	no	0.32/0.32	19/19/0.00	0.0	0.0	1	0	1	0	25	7	5arm	2	nd	0.37	2	1	1	na	na

		reads	miRBase family seed
seed	--------------------------CUAUGGA---------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------ACTATGGAAATAAAGAGCT----------------------------------------------------------------------------	19	1
cbriggsae	cccgcctgaaattttatgataatggACTATGGAAATAAAGAGCTtatcgagaaaacaaattggactgcgaataaggttaatgtttttgttttttcattatatatttaattttcagatcgg
	************************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------------------	NM_172925
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007496
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110231
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_004119
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110232
	----------------------------------------------------------------------------------------------------------------------------------	NM_007736
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110229
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011058
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_006206
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010160
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110228
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110230
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001090075
	----------------------------------------------------------------------------------------------------------------------------------	NM_001087789
	----------------------------------------------------------------------------------------------------------------------------------	NM_001079250
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001020811
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001083316
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_077435
cbriggsae	.(((.((((((((..(((((((((((..((..(((((..((.(((((((((.............)).))).)))).))..)))))..))...)))))))).)))..))))).)))..)))	0.990 -23.32

cbriggsae

chromosome:chrX:5876209:5876328:-1

block5190 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.693	no	no	0.39/0.39	23/23/1.00	0.0	0.0	1	0	1	0	3	20	3arm	1	nd	0.48	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------GAGAGGU------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------CGAGAGGTGAATCATTGAATAAC---	23	1
cbriggsae	cgggagaacatctttgtgcaccgatctggacacatcaagctggctgaattcgtgctcgtcagacgtatgcCGAGAGGTGAATCATTGAATAACccc
	************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	----------------------------------------------------------------------------------------------------------	NM_001003133
cbriggsae	.(((......((..((..((((..((.((..((.((..((.(((((....)).))).))..)).))...))))..))))...))..))....))).	0.790 -22.60

cbriggsae

chromosome:chrX:17294781:17294876:1

Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_non-coding|NM_001003133|MX2 ## {Repeats: no}

sblock57 [novel_lenNOK_multiarm_DicerNOK_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.685	no	no	0.22/0.33	18/26/0.33	0.0 0.5	0.0 4.5	1 2	0 0	1 1	0 0	33 2	-1 15	5arm_loop 3arm	2 2	nd nd	0.48 0.22	4 4	3	1	0	23

		reads	miRBase family seed
seed	------------------------------------------------------------------------------------UAGUAAG--------------------	1	novel
seed	-----------------------------------------------------------------------------------AUAGUAA---------------------	1	novel
seed	----------------------------------UAAAGAA----------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------------------------------------ATAGTAAGGTAAGTTTTACATCGATG--	26	1
	---------------------------------TTAAAGAATTACTCCGGAGTT---------------------------------------------------------	21	1
	----------------------------------------------------------------------------------TATAGTAAGGTAAGTTTT-----------	18	1
cbriggsae	aatattatataatagtattttactatatttaatTTAAAGAATTACTCCGGAGTTaacagaaaatcatacctaatctagttctTATAGTAAGGTAAGTTTTACATCGATGtt
	***************************************************************************************************************
cbriggsae	((((((((.(((...((((((((((((..........(((((((....((.((..............))))....)))))))))))))))))))....))).)).))))))	0.400 -12.54

cbriggsae

chromosome:chrUn:4252358:4252468:1

{Repeats: AT_rich 1 38 1 class=Low_complexity,no}

block1209 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.162	no	no	0.39/0.39	23/23/1.00	0.0	0.0	1	0	1	0	20	2	5arm	1	nd	0.22	2	1	1	na	na

		reads	miRBase family seed
seed	---------------------AGCCAGU------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	--------------------TAGCCAGTATACTTGTAAATCCC---------------------------------------------------------	23	1
cbriggsae	ttactgtttgcctcgctgggTAGCCAGTATACTTGTAAATCCCcaagcagtggaaggttctcgagtaatcggctttggatggatgtgaggagttcagtgt
	****************************************************************************************************
	--------------------------------------------------------------------------------------------------------------	NM_053514
	--------------------------------------------------------------------------------------------------------------	NM_018362
	--------------------------------------------------------------------------------------------------------------	NM_001039354
	--------------------------------------------------------------------------------------------------------------	NM_001033223
cbriggsae	.(((((....((((((.....((((.((.((((((..((((.(((.....)))..))))..)))))))).))))..........))))))....))))).	0.820 -29.56

cbriggsae

chromosome:chrII_random:244624:244723:1

Opposite_strand|Intronic_coding|NM_053514|Lin7a ## Opposite_strand|Intronic_non-coding|NM_018362|LIN7C ## {Repeats: no}

block4380 [novel]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.195	no	no	0.45/0.45	20/20/1.00	0.0	0.0	2	0	1	0	8	25	5arm	1	nd	0.30	3	2	1	na	na

		reads	miRBase family seed
seed	---------UUUUUCA------------------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	--------GTTTTTCAACTCCTTCGTCC------------------------------------------------------------------------------------	20	2
cbriggsae	gatcctctGTTTTTCAACTCCTTCGTCCagaactcctcgataccacttgatcagcctttctatgtccaagtatacctgatgatttgggtggatggtgaagatgaagagatcc
	****************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_076104
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_029999
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_022410
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_031169
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001027419
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_175605
	--------------------------------------------------------------------------------------------------------------------------	NM_181850
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_022416
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_006531
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001110786
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033509
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122952
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001122953
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_010905
cbriggsae	(((.((((..((((((...(((((..(((((..((.(((.....(((((..((.........))..))))).....))).)))))))..))).))))))))...))))))).	0.940 -26.60

cbriggsae

chromosome:chrX:3802648:3802759:-1

Same_strand|Intronic_non-coding|NM_076104|Y71H10A.2 ## Same_strand|Intronic_coding|NM_175605|IFT88 ## Opposite_strand|Intronic_non-coding|NM_181850|Grm3 ## {Repeats: no}

block1522 [novel_lenNOK_loopOverlap]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.102	no	no	0.69/0.69	26/26/0.00	0.0	0.0	1	0	1	0	36	-1	3arm	1	nd	0.27	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------AUGGAGC------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------GATGGAGCTTGCCGGCCGGGATGGTG------------------------------------	26	1
cbriggsae	tcatgcggtcctgtggtgcattccaatgacgccaggtggctcggcggggacgtgggatGATGGAGCTTGCCGGCCGGGATGGTGagacggtctggaatgtaagagttagagtctgttgag
	************************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000209
	----------------------------------------------------------------------------------------------------------------------------------	NM_170975
	----------------------------------------------------------------------------------------------------------------------------------	NM_001027762
	----------------------------------------------------------------------------------------------------------------------------------	NM_007723
	----------------------------------------------------------------------------------------------------------------------------------	NM_001011571
	----------------------------------------------------------------------------------------------------------------------------------	NM_001056446
	----------------------------------------------------------------------------------------------------------------------------------	NM_001027705
	----------------------------------------------------------------------------------------------------------------------------------	NM_013665
	----------------------------------------------------------------------------------------------------------------------------------	NM_075505
	----------------------------------------------------------------------------------------------------------------------------------	NM_010466
	----------------------------------------------------------------------------------------------------------------------------------	NM_068079
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_075402
	----------------------------------------------------------------------------------------------------------------------------------	NM_065139
	----------------------------------------------------------------------------------------------------------------------------------	NM_001025933
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039276
	----------------------------------------------------------------------------------------------------------------------------------	NM_001027777
	----------------------------------------------------------------------------------------------------------------------------------	NM_065222
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065455
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_067633
cbriggsae	(((.((((..(((...(((((((((.((.(((((..((((.(((((((..(((......)))...)))))))))))...)))))...))...))))))))).....)))...))))))).	0.860 -41.60

cbriggsae

chromosome:chrIII:10575798:10575917:-1

Same_strand|Intronic_non-coding|NM_000209|PDX1 ## Opposite_strand|Intronic_non-coding|NM_170975|C33C12.10 ## Opposite_strand|Intronic_coding|NM_007723|Cnga1 ## {Repeats: no}

block1750 [novel_Multihit_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.033	no	no	0.29/0.29	21/21/1.00	0.0	0.0	1	0	1	0	19	15	3arm	12	nd	0.43	5	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------AUAUGAU--------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------TATATGATTTTTGGAACCTAG-------------------	21	1
cbriggsae	tagctaagatcaaagtgtagtatctgttcttatcgtattaacctacggtatacactcgaatgagtgtaattaaggtTATATGATTTTTGGAACCTAGgaaagactcggggcttgct
	********************************************************************************************************************
	------------------------------------------------------------------------------------------------------------------------------	NM_001012682
	------------------------------------------------------------------------------------------------------------------------------	NM_001086665
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001092591
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011448
	------------------------------------------------------------------------------------------------------------------------------	NM_001114175
cbriggsae	.(((.(((.((..(((.........(((((.((((((.((((((..(((.(((((((....)))))))))).))))))))))))....))))).........)))..)).))))))	0.900 -28.87

cbriggsae

chromosome:chrIII:8439520:8439635:1

Opposite_strand|Intronic_coding|NM_001012682|RPLP0 ## Same_strand|Intronic_non-coding|NM_001092591|MGC81879 ## Opposite_strand|Intronic_non-coding|NM_001114175|GABRA2 ## {Repeats: no}

block2050 [novel_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.090	no	no	0.48/0.48	21/21/1.00	0.0	0.0	2	0	1	0	6	21	3arm	1	nd	0.19	4	2	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------GGCAGUA-------------------	2	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------------TGGCAGTAGTGTTGGGAGTAT------	21	2
cbriggsae	gtaaaaagtttacatttcaaaaaattgctatttcaaaatggttatcaatttgtggttcagtttttgaaagtgtTGGCAGTAGTGTTGGGAGTATttttgc
	****************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105717
	--------------------------------------------------------------------------------------------------------------	NM_198022
	--------------------------------------------------------------------------------------------------------------	NM_020066
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047490
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047489
cbriggsae	(((((((...(((.((((((...(((((((((((((((.....((((.....)))).....))))))))....)))))))....))))))))))))))))	0.980 -20.20

cbriggsae

chromosome:chrIV:3283296:3283395:-1

Same_strand|Intronic_non-coding|NM_001105717|Dpysl2 ## Opposite_strand|Intronic_non-coding|NM_198022|Tnrc6c ## Opposite_strand|Intronic_coding|NM_020066|FMN2 ## Same_strand|Intronic_coding|NM_001047490|nhr-97 ## {Repeats: no}

block2057 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.115	no	no	0.37/0.37	19/19/0.00	0.0	0.0	1	0	1	0	11	17	5arm	1	nd	0.42	5	1	1	na	na

		reads	miRBase family seed
seed	------------UUUGUCA------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------TTTTGTCAGAGTTAGCCAT-------------------------------------------------------------------	19	1
cbriggsae	ttcatctccgaTTTTGTCAGAGTTAGCCATagtcgtaaaatctctaagaactgattagatttatgtaccattttaatctctgaaatcttcagtgaac
	*************************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001105717
	-----------------------------------------------------------------------------------------------------------	NM_112886
	-----------------------------------------------------------------------------------------------------------	NM_079809
	-----------------------------------------------------------------------------------------------------------	NM_020066
cbriggsae	(((((....((((...((((((((((.....((((((((...(((((.......))))))))))).))....)))).))))))))))....))))).	1.000 -17.10

cbriggsae

chromosome:chrIV:3380627:3380723:-1

Same_strand|Intronic_non-coding|NM_001105717|Dpysl2 ## Opposite_strand|Intronic_non-coding|NM_112886|ATATM ## Opposite_strand|Intronic_coding|NM_020066|FMN2 ## {Repeats: no}

block1637 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.291	no	no	0.61/0.61	23/23/1.00	0.0	0.0	1	0	1	0	15	20	3arm	1	nd	0.39	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------AGCUGCG------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------------GAGCTGCGTGAACTTTGGTCGGC---------------	23	1
cbriggsae	attttttgtcgttgttgatttcttcaggttgagcgtagacgtaaggggggtaacatgagtttcgatatctccagaagttgatGAGCTGCGTGAACTTTGGTCGGCaaaccgattgagagc
	************************************************************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_172925
	----------------------------------------------------------------------------------------------------------------------------------	NM_065286
	----------------------------------------------------------------------------------------------------------------------------------	NM_001093260
	----------------------------------------------------------------------------------------------------------------------------------	NM_009573
	----------------------------------------------------------------------------------------------------------------------------------	NM_130279
cbriggsae	.(((((.(((((((((((((..((((.((....(((.(((.....(((((((...((.....)).)))))))....))).)))....)).))))....)))))))))..)))).))))).	0.980 -29.80

cbriggsae

chromosome:chrIII:2263372:2263491:1

Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_non-coding|NM_065286|Y53G8AR.6 ## {Repeats: no}

block3048 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.091	no	no	0.43/0.43	23/23/1.00	0.0	0.0	2	0	1	0	5	20	5arm	1	nd	0.43	3	2	1	na	na

		reads	miRBase family seed
seed	------UUUGAUC------------------------------------------------------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	-----TTTTGATCGGATCCTATTCAGCC---------------------------------------------------------------------------------	23	2
cbriggsae	tggaaTTTTGATCGGATCCTATTCAGCCgacgacatccaagtttcttcttgacgaagatgatcttcttaacgaggatgttcaccatagctgactggttttcttctccat
	*************************************************************************************************************
cbriggsae	((((.....((..(((..(((.(((((....(((((((..((((((((.....)))))..........)))..))))))).......))))).)))..))).)))))).	0.510 -25.80

cbriggsae

chromosome:chrUn:2676729:2676837:-1

{Repeats: no}

block1175 [novel_shortStem]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.142	no	no	0.62/0.62	24/24/1.00	0.0	0.0	1	0	1	0	0	0	3arm	2	nd	0.22	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------CACGCCA----------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------GCACGCCATTGGTAGCTGAGGTGG	24	1
cbriggsae	accatctcatgctctggcagatgctcgccttcttcctgttccacctcttcttGCACGCCATTGGTAGCTGAGGTGG
	****************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001085229
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062047
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_062035
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066275
cbriggsae	.((((((((.((((((((...(((............................))).)))...)).)))))))))))	0.490 -19.39

cbriggsae

chromosome:chrII_random:1795271:1795346:-1

Same_strand|Intronic_non-coding|NM_001085229|ATDCI1 ## Same_strand|Intronic_coding|NM_062035|lin-8 ## {Repeats: no}

block2205 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.280	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	13	10	5arm	2	nd	0.33	4	1	1	na	na

		reads	miRBase family seed
seed	--------------CCAUAUC----------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------TCCATATCCTGCCAGGTTTTG---------------------------------------------------------------------------	21	1
cbriggsae	tactcgttctcagTCCATATCCTGCCAGGTTTTGaaaagatcaagaaaattttattgtcctcattttcaaagtgtggtttttcattgtgttctctcatgcagtatgagt
	*************************************************************************************************************
	-----------------------------------------------------------------------------------------------------------------------	NM_057270
	-----------------------------------------------------------------------------------------------------------------------	NM_164773
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_066961
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001001344
cbriggsae	.((((((.((.((..((((....((((..(((((((((((.(((..........)))...)).)))))))))..)))).......))))..)).......)).))))))	0.520 -19.10

cbriggsae

chromosome:chrIV:9028949:9029057:-1

Opposite_strand|Intronic_coding|NM_057270|LanB1 ## Same_strand|Intronic_non-coding|NM_066961|W09D10.4 ## Same_strand|Intronic_coding|NM_001001344|ATP2B3 ## {Repeats: no}

block2440 [novel_lenNOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.433	no	no	0.58/0.58	19/19/0.00	0.0	0.0	2	0	1	0	15	3	3arm	1	nd	0.26	4	2	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------GGUGCCG--------------------------	2	novel
		len	cloning frequencies
			AF16
	--------------------------------------------------TGGTGCCGTTACTGGATGG---------------	19	2
cbriggsae	tttgctgtttcagacttttcagatcatttagggcatattttgaacttcaaTGGTGCCGTTACTGGATGGagctttacaccaagc
	************************************************************************************
	----------------------------------------------------------------------------------------------	NM_070351
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_182271
cbriggsae	((((.(((...((.(((.......((((((((((((...(((.....)))..)))))....))))))))))))..))).)))).	0.540 -16.11

cbriggsae

chromosome:chrIV:2111299:2111382:1

Opposite_strand|Intronic_non-coding|NM_070351|LLC1.2 ## Same_strand|Intronic_coding|NM_182271|K02E7.4 ## {Repeats: no}

block977 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.646	no	no	0.40/0.40	20/20/1.00	0.0	0.0	2	0	1	0	15	-1	3arm	1	nd	0.35	4	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------CAGAGAU---------------------------	2	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------ACAGAGATTTAGAACCAAGC---------------	20	2
cbriggsae	atcaaaaacggtagaatcacggattctggggagagattctggggaaataagctatgaaACAGAGATTTAGAACCAAGCgtgatatgttggggg
	*********************************************************************************************
	-------------------------------------------------------------------------------------------------------	NM_177732
	-------------------------------------------------------------------------------------------------------	NM_121608
	-------------------------------------------------------------------------------------------------------	NM_214509
	-------------------------------------------------------------------------------------------------------	NM_001030843
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001101718
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001056446
	-------------------------------------------------------------------------------------------------------	NM_001036812
	-------------------------------------------------------------------------------------------------------	NM_001125761
	.................................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_001026860
	.................................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_001026861
	.................................................................<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	NM_001026859
cbriggsae	.((...((((.....((((((.....(((....((((((((..................))))).)))....)))..)))))).))))..)).	0.560 -13.87

cbriggsae

chromosome:chrII:7650727:7650819:1

Opposite_strand|Intronic_non-coding|NM_177732|Slc35d1 ## Opposite_strand|Intronic_coding|NM_121608|AT5G16030 ## Same_strand|Intronic_coding|NM_001101718|LOC100009540 ## Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Boundary_non-coding|NM_001026860|trr-1 ## {Repeats: no}

block2574 [novel_loopOverlap_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.162	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	31	-1	5arm_loop	1	nd	0.29	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------UUUUCGU---------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------TTTTTCGTATATGGGGTTGAC--------------------------------------------------------	21	1
cbriggsae	gctgaaatgaagaattgctttgctttagtacTTTTTCGTATATGGGGTTGACcaaattatcttcaaagctttcccaattcgagaaagacataacacagtttttccagt
	************************************************************************************************************
	----------------------------------------------------------------------------------------------------------------------	NM_071866
	----------------------------------------------------------------------------------------------------------------------	NM_069257
cbriggsae	((((....(((((((((..(((.....((.((((((((....(((((((((...........)))).....)))))...)))))))))).)))..)))))))))))))	0.600 -21.30

cbriggsae

chromosome:chrIV:4619552:4619659:1

Opposite_strand|Intronic_coding|NM_071866|F39G3.6 ## {Repeats: no}

block4119 [novel_cloningOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.525	no	no	0.50/0.63	20/27/0.93	4.8	4.1	10	0	1	0	9	-8	3arm	20	nd	0.40	3	14	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------CCUUAGG-------------------------------------	7	novel
seed	---------------------------------------------------------------CGAAUCC---------------------	3	novel
seed	---------------------------------------------------AGGUCGC---------------------------------	1	novel
seed	-------------------------------------------------------CGCUGGU-----------------------------	1	novel
seed	------------------------------------------------------------GUUCGAA------------------------	1	novel
seed	--------------------------------------------------UAGGUCG----------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------------------------------------TCCTTAGGTCGCTGGTTCGAATC----------------------	23	5
	--------------------------------------------------------------TCGAATCCGGCTCGACGGAA---------	20	3
	----------------------------------------------TCCTTAGGTCGCTGGTTCGAAT-----------------------	22	2
	------------------------------------------------------TCGCTGGTTCGAATCCGGCTCGACGGA----------	27	1
	-------------------------------------------------TTAGGTCGCTGGTTCGAATCCG--------------------	22	1
	--------------------------------------------------TAGGTCGCTGGTTCGAATCCG--------------------	21	1
	-----------------------------------------------------------GGTTCGAATCCGGCTCGACGGAA---------	23	1
cbriggsae	tcgatagctcagttggtagagcggaggactgtagagtcagtgggtaTCCTTAGGTCGCTGGTTCGAATCCGGCTCGACGGAAttgtttttg
	*******************************************************************************************
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	-----------------------------------------------------------------------------------------------------	NM_011821
	-----------------------------------------------------------------------------------------------------	NM_134696
	-----------------------------------------------------------------------------------------------------	NM_001040230
	-----------------------------------------------------------------------------------------------------	NM_134696
	-----------------------------------------------------------------------------------------------------	NM_134696
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001041377
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001042144
	-----------------------------------------------------------------------------------------------------	NM_001079844
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_207352
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070729
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007253
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_133969
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001114375
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_073089
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001114364
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001040233
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001039441
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001114378
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001112752
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_136628
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001034373
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_079859
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_080304
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_143763
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001114388
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001015810
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001097919
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001015770
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001016020
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001097657
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001114374
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001001879
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001130521
cbriggsae	.(((.(((....((.((.((((...(((.....((..((((((...........))))))..))...))).)))).)).))...))).)))	0.440 -23.10

cbriggsae

chromosome:chrV:11213830:11213920:1

Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_non-coding|NM_011821|Gpc6 ## Opposite_strand|Intronic_coding|NM_134696|CG2839 ## Same_strand|Intronic_coding|NM_001041377|ECU05_1680 ## {Repeats: no}

block3617 [novel_shortStem_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.002	no	no	0.35/0.35	23/23/1.00	0.0	0.0	1	0	1	0	0	2	5arm	1	nd	0.22	4	1	1	na	na

		reads	miRBase family seed
seed	-UUAAACA--------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	GTTAAACAGTACAGAATCCATCT-----------------------------------------	23	1
cbriggsae	GTTAAACAGTACAGAATCCATCTtcagcagcttgattcgaagatgaaactgttcttgtttgaca
	****************************************************************
cbriggsae	(((((((((.((((....(((((((.............)))))))...))))..))))))))).	1.000 -19.12

cbriggsae

chromosome:chrUn:7196540:7196603:1

{Repeats: no}

block477 [novel_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.380	no	no	0.48/0.48	21/21/1.00	0.0	0.0	1	0	1	0	13	11	3arm	1	nd	0.38	4	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------UUCAGUC--------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------GTTCAGTCTAGTTTGGGCGTT-------------	21	1
cbriggsae	cctaaaacagcctagttccaacctggagtgttactgatttcatcgatcagatcttGTTCAGTCTAGTTTGGGCGTTccttgtctctggt
	*****************************************************************************************
cbriggsae	((....((((....((.((((.(((((.((...((((((.....))))))........)).))))).)))))).....))))....)).	0.830 -18.60

cbriggsae

chromosome:chrI_random:2682170:2682258:-1

{Repeats: no}

block1642 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.548	no	no	0.45/0.45	22/22/1.00	0.0	0.0	1	0	1	0	16	-2	5arm_loop	5	nd	0.45	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------AAUAUCG--------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------GAATATCGAAACAACTGCCTCG------------------------------------------	22	1
cbriggsae	ccgtcccccgaagtccGAATATCGAAACAACTGCCTCGatgggcctggtcttctcgaagcactcggttcttctctagcga
	********************************************************************************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	------------------------------------------------------------------------------------------	NM_006386
	------------------------------------------------------------------------------------------	NM_001093260
	------------------------------------------------------------------------------------------	NM_001093256
	------------------------------------------------------------------------------------------	NM_001045920
	------------------------------------------------------------------------------------------	NM_009573
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_065104
	------------------------------------------------------------------------------------------	NM_001098504
cbriggsae	.(((.....((((.((((...((((....(((((((....))))..)))....)))).....))))..))))....))).	0.940 -18.00

cbriggsae

chromosome:chrIII:2483382:2483461:1

Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Opposite_strand|Intronic_non-coding|NM_006386|DDX17 ## {Repeats: no}

block1904 [novel_lenNOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.004	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	19	18	5arm	1	nd	0.21	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------CUGGUUG-------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-------------------ACTGGTTGGGAAGGTTCAG--------------------------------------------------------------------------------	19	1
cbriggsae	tggaagagcgtctggatccACTGGTTGGGAAGGTTCAGaagacgtggattcttctggagacggagggttgaatttttctggagcatctgaagtctttggcggtggagacggtgattcc
	**********************************************************************************************************************
	--------------------------------------------------------------------------------------------------------------------------------	NM_123965
	--------------------------------------------------------------------------------------------------------------------------------	NM_024349
	--------------------------------------------------------------------------------------------------------------------------------	NM_008091
	--------------------------------------------------------------------------------------------------------------------------------	NM_019034
	--------------------------------------------------------------------------------------------------------------------------------	NM_001016369
	--------------------------------------------------------------------------------------------------------------------------------	NM_001032772
	--------------------------------------------------------------------------------------------------------------------------------	NM_001040602
	--------------------------------------------------------------------------------------------------------------------------------	NM_001093711
	--------------------------------------------------------------------------------------------------------------------------------	NM_001095157
	--------------------------------------------------------------------------------------------------------------------------------	NM_199692
	--------------------------------------------------------------------------------------------------------------------------------	NM_001033835
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047948
	--------------------------------------------------------------------------------------------------------------------------------	NM_175092
	--------------------------------------------------------------------------------------------------------------------------------	NM_001123190
	--------------------------------------------------------------------------------------------------------------------------------	NM_001126828
	--------------------------------------------------------------------------------------------------------------------------------	NM_001010953
	--------------------------------------------------------------------------------------------------------------------------------	NM_001127285
	<<------------------------------------------------------------------------------------------------------------------------------	NM_070597
cbriggsae	.((((...((.(((..(((((((...((((.(((((((((((.((....(((((((....)))))))....)))))))))))....))....))))...)))))))..))))).))))	0.940 -40.50

cbriggsae

chromosome:chrIV:741335:741452:-1

Opposite_strand|Intronic_coding|NM_123965|ARAC2 ## Opposite_strand|Intronic_non-coding|NM_024349|Ak1 ## Same_strand|Intronic_coding|NM_001047948|LOC499584 ## {Repeats: no}

block4311 [novel_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.250	no	no	0.59/0.59	22/22/1.00	0.0	0.0	1	0	1	0	16	21	5arm	1	nd	0.32	3	1	1	na	na

		reads	miRBase family seed
seed	-----------------UUCGCGG-------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	----------------GTTCGCGGTTCCGCCGTTCTTT-----------------------------------------------------------------------------	22	1
cbriggsae	ttttcgcttcacgagtGTTCGCGGTTCCGCCGTTCTTTcgttttgccattataacctgaaaaatcagtcagaattttacgagtaacgacatggagaaatcgatattcaagcgaaa
	*******************************************************************************************************************
cbriggsae	.((((((((...(((((.(((...(((((.((((..(((((......(((.....((((....))))....)))...))))).))))...)))))....))))))))))))))))	0.540 -25.30

cbriggsae

chromosome:chrV_random:1935757:1935871:1

{Repeats: no}

miR-Intess™

Additional hairpins

block3588 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

block1295 [novel_lenNOK_loopOverlap_nonpairedHIGH]

block2757 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

block1898 [novel_loopOverlap_nonpairedHIGH]

block4539 [novel_shortStem]

block2771 [novel_lenNOK_nonpairedHIGH]

block4892 [novel_lenNOK_nonpairedHIGH]

block5189 [novel_Multihit]

block3022 [novel_lenNOK_loopOverlap_nonpairedHIGH_bulgeHIGH]

block1993 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

block3113 [novel_cloningOK_5varHIGH]

block2294 [novel]

block980 [novel]

block3138 [novel]

block2674 [novel_lenNOK_shortStem]

block4568 [novel_Multihit_shortStem]

block3558 [novel_lenNOK_nonpairedHIGH]

block1540 [novel_lenNOK_loopOverlap_nonpairedHIGH]

block1412 [novel_lenNOK_randfoldOK_nonpairedHIGH_bulgeHIGH]

block3491 [novel_lenNOK_multiarm_nonpairedHIGH]

block3470 [novel_Multihit_nonpairedHIGH]

block2004 [novel]

block2863 [novel_lenNOK_loopOverlap_nonpairedHIGH]

block3129 [novel_lenNOK_5varHIGH_loopOverlap]

block3420 [novel_lenNOK]

block2967 [novel_randfoldOK_nonpairedHIGH]

block1478 [novel_lenNOK_nonpairedHIGH]

block841 [novel_loopOverlap]

block2944 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

sblock72 [novel_lenNOK_multiarm_DicerNOK]

block1192 [novel_lenNOK]

block2505 [novel_shortStem_bulgeHIGH]

block2373 [novel_shortStem]

block4287 [novel_nonpairedHIGH]

block1078 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

block2900 [novel_lenNOK]

block816 [novel]

block1460 [novel_bulgeHIGH]

block2359 [novel_lenNOK_nonpairedHIGH]

block2033 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

block2522 [novel_shortStem_nonpairedHIGH]

block3485 [novel_nonpairedHIGH]

block5156 [novel_lenNOK_shortStem]

block2890 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

block4699 [novel_Multihit]

block5225 [novel_Multihit_shortStem]

block1551 [novel]

block3083 [novel_lenNOK]

block2682 [novel]

block2656 [novel_loopOverlap]

block4116 [novel_loopOverlap_nonpairedHIGH_bulgeHIGH]

block781 [novel_nonpairedHIGH]

block3362 [novel]

block1745 [novel_Multihit_nonpairedHIGH_bulgeHIGH]

block567 [novel_nonpairedHIGH_bulgeHIGH]

block1320 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

block3402 [novel_loopOverlap_nonpairedHIGH]

block1520 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

block3603 [novel_bulgeHIGH]

block4208 [novel_nonpairedHIGH_bulgeHIGH]

block1187 [novel_lenNOK_nonpairedHIGH]

sblock16 [novel_multiarm_DicerNOK_bulgeHIGH]

block863 [novel_lenNOK_shortStem]

block839 [novel_nonpairedHIGH]

block1261 [novel]

block1839 [novel_lenNOK_shortStem]

block4780 [novel_cloningHIGH_5varHIGH_nonpairedHIGH_bulgeHIGH]

block2955 [novel_lenNOK_cloningOK_5varHIGH]

block2060 [novel_lenNOK_shortStem]

block1874 [novel]

sblock86 [novel_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK]

block704 [novel]

block324 [novel_RNA_lenNOK]

block4406 [novel_lenNOK_nonpairedHIGH_bulgeHIGH]

block2876 [novel_loopOverlap_nonpairedHIGH]

block4727 [novel_shortStem_nonpairedHIGH_bulgeHIGH]

block1165 [novel_lenNOK_randfoldOK_nonpairedHIGH]

block1885 [novel_cloningOK_Multihit_loopOverlap_nonpairedHIGH_bulgeHIGH]