miR-Intess: block1423

block1423_cand

Cloning frequencies
absolute	AF16
block1423_cand 3arm	1
normalized	AF16
block1423_cand 3arm	0.003

block1423 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.008	no	no	0.45/0.45	22/22/1.00	0.0	0.0	1	0	1	0	17	5	3arm	1	nd	0.23	2	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------------------UCAAUAU-------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------------------------------TTCAATATACAGGATAGCCCCG-----------------	22	1
cbriggsae	TGTATTCAGTCTCTAGTATTC----CCAGTGCTCACTAGGCTTTCCCGTTT-TGTTGAACTAATAGCAAATT-TAAGTTCAATATACAGGATAGCCCCGTGAGTGGAAAGAAAGCA
cremanei	-----------------------------------CCAGACTTTCCGTGTGAAATTGAACC--TACACAGTT-TAGGTTCAATATACCGGATAGTCTGG-----------------
celegans	----TTTTGCCACAACTATTCTATTCTTTATTTCACCAGACTATCTAGGAAATATTGAACTAATA-CAAATT-TTAGTTCAATATACCGGATGGTCTGGTGAAA------------
cbrenneri	---------------GTATCC-------------------CTTTTCAGTTGATGATTGATTGAAGCGTAACT-TCTGATCAATATGATGACAGGGCTCG-----------------
cjaponica	------------------------------GCCGGCAAGAATATTGAATTGATAATAACAAGCTGTTCTATTATCAATTCAATATTC----TTGCCTGGT----------------
	* * * * * ******* * * *
	++++++++++++++++++++++++++ ++++++++++++++++++++++++++ ++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++	NM_111381
	-------------------------- -------------------------- -------------------- ------------------------------------------------	NM_139424
	++++++++++++++++++++++++++ ++++++++++++++++++++++++++ ++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++	NM_180185
	++++++++++++++++++++++++++ ++++++++++++++++++++++++++ ++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++	NM_023879
	-------------------------- -------------------------- -------------------- ------------------------------------------------	NM_001115091
	-------------------------- -------------------------- -------------------- ------------------------------------------------	NM_001085641
	-------------------------- -------------------------- -------------------- ------------------------------------------------	NM_080500
	-------------------------- -------------------------- -------------------- ------------------------------------------------	NM_080504
	-------------------------- -------------------------- -------------------- ------------------------------------------------	NM_169728
	-------------------------- -------------------------- -------------------- ------------------------------------------------	NM_169729
	-------------------------- -------------------------- -------------------- ------------------------------------------------	NM_169730
	-------------------------- -------------------------- -------------------- ------------------------------------------------	NM_206497
	-------------------------- -------------------------- -------------------- ------------------------------------------------	NM_131119
cbriggsae	.((.(((..(((......... .....((((((..((((.(((.((.. (((((((((((........) )).)))))))).)).))).))))..)))))))))..))).)).	0.900 -32.33
cremanei	(((((((.((((.(((..(((((((( ((....... )))))))))).))))))).)))))))	1.000 -30.20
celegans	..........................((((((((((((((((.((..((((((((((((.. ...... )))))))))))).))))))))))))))))))	0.963 -38.60
cbrenneri	....(( ((..(((.......(((((((((((.....)) )).)))))))....))).))))....	0.988 -14.10
cjaponica	(((((((((((((((((((((((((((((.....))..))))))))))))))))))) ))))).)))	1.000 -35.60

cbriggsae	chromosome:chrIII:7136741:7136850:-1	Same_strand\|Intronic_non-coding\|NM_111381\|AT3G05090 ## Opposite_strand\|Intronic_coding\|NM_139424\|CG11814 ## Same_strand\|Intronic_coding\|NM_023879\|Rpgrip1 ## {Repeats: no}
cremanei	chromosome:chrUn:82777181:82777330:-1	intergenic
celegans	chromosome:chrIII:4571582:4571679:1	Same_strand\|Exonic_coding\|F35G12.2.1
cbrenneri	chromosome:chrUn:146941660:146941809:1	intergenic
cjaponica	chromosome:chrUn:25898653:25898718:-1	Same_strand\|Intronic_coding\|NM_001004193

miR-Intess™

block1423_cand

block1423 [novel_randfoldOK]