miR-Intess: block2703

block2703_cand

Cloning frequencies
absolute	AF16
block2703_cand 5arm	0.111
normalized	AF16
block2703_cand 5arm	0.000

block2703 [novel_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.002	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	23	12	5arm	9	nd	0.14	2	1	1	na	na

		reads	miRBase family seed
seed	------------------------CAGAAGA-----------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			AF16
	-----------------------TCAGAAGA-GATTGTGTGATGG---------------------------------------------------------------------------------------	21	1
cbriggsae	GCTCATCTCTGCTTCCTAGGGACTCAGAAGA-GATTGTGTGATGGAAACCCCCGAGG---------------------TAACCTTGGGTATCTATCGCGGGAATTTTCTGAGCTCGGAACGGCCTGTGTTGC
cremanei	-----------------------TCAGAAGATAACTATGATGCGTTAAATATCGAGTAGAACGTACATCTTCTCCATCTTTCTGCGTATGCTCA--------ATTTTC---------------------TGA
cbrenneri	GC-----------------GGAGTCAGAAGA-GGCATTCGGTT-----CTTCAGAGGATACA---------------CTTGCTTCTGATGTTGAGAGTGGAGATTCTG-----------------ATGTTGC
ppacificus	-----------------------GCAGAAGA-GATTGTTGTATGCGAACCACATGG---------------------------TCGGATCGCCGCTAGGATCATTTTC---------------------CGC
	******* * * * *** * *
	++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001069271
	++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214466
	------------------------------------ ------------------------- -----------------------------------------------------------	NM_182461
	++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033380
	++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_021760
	++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214466
	++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007740
	++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134452
	++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001858
	++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	------------------------------------ ------------------------- -----------------------------------------------------------	NM_001105289
	++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001033832
	++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_214509
	++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001033832
	++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011005
	------------------------------------ ------------------------- -----------------------------------------------------------	NM_000393
	++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007737
	++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_152888
	++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_033381
	++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_000495
	------------------------------------ ------------------------- -----------------------------------------------------------	NM_000090
	------------------------------------ ------------------------- -----------------------------------------------------------	NM_001004090
	++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_070204
cbriggsae	((.(((..(((.((((..(((.((((((((( ..((.(((((((((....((((((( ...)))))))..))))))))).)).)))))))))))))))))))...)))..))	1.000 -44.30
cremanei	(((((((((.......((((((.(((.((.(((.(((.......))).))).)).)))..))))))..... )))))) )))	0.781 -16.40
cbrenneri	(( ((.(((((((.. ..(((((.... ..(((((((..... ....)))))))......)))))....))))) )).))))	1.000 -24.50
ppacificus	((.((((( ((((...((..((((.((...... ..)).)))).))...)))).))))) .))	0.989 -15.10

cbriggsae	chromosome:chrIV:9777517:9777626:1	Same_strand\|Intronic_coding\|NM_001069271\|Os09g0271100 ## Opposite_strand\|Intronic_coding\|NM_182461\|set-33 ## Same_strand\|Intronic_non-coding\|NM_001011629\|Mblk-1 ## Opposite_strand\|Intronic_non-coding\|NM_001004090\|Tspan5 ## {Repeats: no}
cremanei	chromosome:chrUn:132234171:132234320:-1	Same_strand\|Intronic_coding\|NM_205265 ## Opposite_strand\|Intronic_coding\|NM_001026783
cbrenneri	chromosome:chrUn:186126895:186126971:1	Opposite_strand\|UTR_coding\|NM_001129475
ppacificus	chromosome:chrUn:91694222:91694371:-1	Opposite_strand\|Intronic_coding\|NM_025287

miR-Intess™

block2703_cand

block2703 [novel_randfoldOK]