miR-Intess: block390

block390_novel

Cloning frequencies
absolute	AF16
block390_novel 5arm	7
normalized	AF16
block390_novel 5arm	0.018

block390 [novel_cloningOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.57/0.57	21/23/1.00	0.0	0.0	6	0	1	0	13	13	5arm	1	nd	0.22	2	7	1	na	na

		reads	miRBase family seed
seed	--------------AGCCAAU---------------------------------------------------------------------------------------	7	novel
		len	cloning frequencies
			AF16
	-------------CAGCCAATGCCACGACTGTCATG------------------------------------------------------------------------	23	6
	-------------CAGCCAATGCCACGACTGTCA--------------------------------------------------------------------------	21	1
cbriggsae	TTCATATTTTGAGCAGCCAATGCCACGACTGTCATGGTCTAAAAATCCGATAGCTGGATAATCCGATAGTTCATGACAGTGGTACATTGTCTACTCGAAATTTTTGAA
cremanei	-------------TAGCCAATGTCACTACTGTCATG----------------------TAAATGAAAAGCTCATGACAGTGGTACATTGTCTA---------------
	****** * ******* * * *********************
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_100944
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001059280
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001050497
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001059517
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001082159
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_057483
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_204894
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001106587
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001126434
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_116413
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_116412
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_011530
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_022238
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001114583
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_032056
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_120473
	----------------------------------------------------------------------------------------------------------------------	NM_004098
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_100133
cbriggsae	.(((.((((((((.((.(((((..((.(((((((((..(((...(((((.....))))).......)))..))))))))).)).))))).)).))))))))...))).	1.000 -37.30
cremanei	(((.((((((.(((((((((((( .............)))))))))))))))))).)))	1.000 -24.72

cbriggsae	chromosome:chrI:9169028:9169135:1	Same_strand\|Intronic_coding\|NM_100944\|PGP10 ## Same_strand\|Intronic_non-coding\|NM_001106587\|Tnpo3 ## Opposite_strand\|Intronic_non-coding\|NM_004098\|EMX2 ## {Repeats: no}
cremanei	chromosome:chrUn:121878067:121878214:1	Opposite_strand\|Intronic_coding\|NM_010228

miR-Intess™

block390_novel

block390 [novel_cloningOK_randfoldOK]