C.briggsae small RNAs

miR-Intess™

miR classification

miR expression

block4618_novel

block4618_novel

Cloning frequencies
absolute	AF16
block4618_novel 3arm	6
normalized	AF16
block4618_novel 3arm	0.016

block4618_novel relative cloning frequencies

block4618 [novel_cloningOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.004	no	no	0.33/0.33	21/21/1.00	0.0	0.0	6	0	1	0	38	2	3arm	1	nd	0.14	2	6	1	na	na

block4618 hairpin

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------UGAGGUA----------------------------------------------------------------	6	novel
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------------------------TTGAGGTAATCTTT--GGTTTTG-------------------------------------------------	21	6
cbriggsae	----------TTTTTTTTTGAGGTTCGAGGCTATC--------------AAGCCCAAATGAATACCTTTCAACTAGAATCCAAAGTTGAGGTAATCTTT--GGTTTTGACAGACGATTCGAGCTGATCATGACCTTCAAAAAGAGA-----------
celegans	AATGCGGAAAACAGGTTGTTCGATCCAAAAATAACGATAATTTTTGTTGAAACGCTTGAAAAGACCTAAAA----TAGTGCCGATTTGAGGTATTTTTCAAGCTTTTCAACAAAAATTAACGTTATTTTTTAGATAGAACAACTTTTTTTCTACGTT
cbrenneri	--------------------------GAAGACTTC--------------AAGCCC--------ACCATT------GAATCC---TTTGAGGTAATCTT-------------GAAGATTTC-------------------------------------
ppacificus	-----------------------------AGCGTC-----------------CCGTCAGAAATATCATCAAG---GTGAGTAATATTGAGGTAGTCTT--------------ACGGTAGCA------------------------------------
	* * * * ******** * ** * *
	----- ------------------------- -------------------------------------------------- --------------------------------------------- -----	NM_001026149
cbriggsae	(((((((((((((((((((.((.(( ((..(((((.((.((((..((((((.........)))))))))).))))) ))..)))).))....))))))))...........)))))))))))	0.710 -35.40
celegans	((((..(((((.(((((((((.(((.((((((((((.(((((((((((((((.((((((((((((((.((( (.......)))).)))).)))))))))).))))))))))))))).))))))))))..))).))))))))).)))))..))))	0.999 -63.60
cbrenneri	((((.(((( (((... (((.(( ((.... .)))))))...))) )))).))))	0.997 -11.40
ppacificus	.((... ((((.(((..((((.((((. ((.....)).)))))))).))). ))))..)).	0.997 -15.00

cbriggsae	chromosome:chrX:15631738:15631857:-1	Opposite_strand\|Intronic_coding\|NM_001026149\|mes-6 ## {Repeats: no}
celegans	chromosome:chrV:4145125:4145277:-1	Opposite_strand\|Intronic_coding\|Y45G5AL.1a
cbrenneri	chromosome:chrUn:95608622:95608781:-1	Same_strand\|Intronic_coding\|NM_010206 ## Opposite_strand\|Intronic_coding\|NM_063731
ppacificus	chromosome:chrUn:97886086:97886245:1	intergenic

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