C.briggsae small RNAs

miR-Intess™

miR classification

miR expression

block4816_cand

block4816_cand

Cloning frequencies
absolute	AF16
block4816_cand 3arm	42
normalized	AF16
block4816_cand 3arm	0.109

block4816_cand relative cloning frequencies

block4816 [novel_cloningHIGH_mirtron]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.072	no	no	0.33/0.35	21/23/1.00	0.0	0.0	31	0	1	0	24	3	3arm	1	0	0.26	3	42	1	na	na

block4816 hairpin

		reads	miRBase family seed
seed	------------------------------------------------------------------------GACAUGC---------------------------------------	42	novel
		len	cloning frequencies
			AF16
	-----------------------------------------------------------------------TGACATGCCATAATTTCTTACAG------------------------	23	31
	-----------------------------------------------------------------------TGACATGCCATAATTTCTTAC--------------------------	21	11
cbriggsae	---GTAAAAGAAGTTCAGCAAGTCGACGAACCAGGTAAGGATTATTGCTTGTCTCACATAAAAATCTCATGTGACATGCCATAATTTCTTACAGCAACCGCGACATGTCATATCGTAC
ppacificus	TGGGTAAA-----TTCTG-----CGTTGAGCTGTACTGGGATCAC-------------------GCTCCCCGGACATGCCAGAATTTCGCTGA-------------------------
	*** * * * **** * * ***** **** *
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001011629
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001047939
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_204234
	----- ------------------------------------------------------------------------------------------------------------------------	NM_178014
	+++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	NM_077168
cbriggsae	(((...((.((...(((.((((.((......(((((((((((.((.((((..((((.........)))))))).)).)))))).)))))......)))))).))).)).)).)))	0.980 -25.00
ppacificus	..(((((( ((((( ......(((((.(((((..... ....)))))))).)))))))))).)))..	0.995 -18.20

cbriggsae	chromosome:chrX:1897708:1897822:1	Same_strand\|Intronic_non-coding\|NM_001011629\|Mblk-1 ## Same_strand\|Intronic_coding\|NM_001047939\|LOC499407 ## Opposite_strand\|Intronic_non-coding\|NM_178014\|TUBB ## Same_strand\|UTR_coding\|NM_077168\|B0416.1 ## {Repeats: no}
ppacificus	chromosome:chrUn:109975239:109975393:-1	Opposite_strand\|Intronic_coding\|NM_001042506 ## Same_strand\|Boundary_non-coding\|NM_068717 ## Same_strand\|Intronic_coding\|NM_177732

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