cbr-mir-1
| absolute | AF16 |
| cbr-mir-1 5arm | 12 |
| cbr-mir-1 3arm | 57 |
| normalized | AF16 |
| cbr-mir-1 5arm | 0.031 |
| cbr-mir-1 3arm | 0.149 |
sblock6 (miRBase cbr-mir-1) [miRNAknown_cloningHIGH_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-1 | 0.001 | no | no | 0.28/0.43 | 18/21/0.99 | 0.0 0.0 | 0.0 0.0 | 12 56 | 0 0 | 1 1 | 0 0 | 15 19 | 5 7 | 5arm 3arm | 1 1 | nd nd | 0.14 0.10 | 2 1 | 69 | 1 | 1 | 1 |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------------------------GGAAUGU--------------------------------------------------- | 57 | miR-1 |
| seed | ----------------------------------------AUACUUC------------------------------------------------------------------------------------------------------- | 12 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -------------------------------------------------------------------------------------------TGGAATGTAAAGAAGTATGT--------------------------------------- | 20 | 56 | |
| ---------------------------------------CATACTTCCT-TACATGCCCAT----------------------------------------------------------------------------------------- | 21 | 12 | |
| -------------------------------------------------------------------------------------------TGGAATGTAAAGAAGTAT----------------------------------------- | 18 | 1 | |
| cbr-miR-1 | -------------------------------------------------------------------------------------------TGGAATGTAAAGAAGTATGTA-------------------------------------- | 21 | - |
| cbriggsae | ------------------------TGCTGTGCCGAGCTGCATACTTCCT-TACATGCCCATACTGTA--------CTG---TGAATGGATATGGAATGTAAAGAAGTATGTAGAACGGA--------ATCTAACGGCG------------ | ||
| cremanei | -------------------------GCTGTGCCGAGCTGCATACTTCCT-TACATGCCCATACTATA--------TCA---GTAATGGATATGGAATGTAAAGAAGTATGTAGAACGGT--------TTTGAAAAACGGCTAAATTTTGC | ||
| celegans | ---------CGCTATATTCAAAGTGACCGTACCGAGCTGCATACTTCCT-TACATGCCCATACTATA--------TCA---TAAATGGATATGGAATGTAAAGAAGTATGTAGAACGGG----------GTGGTAGTGTTTTAATGGTG- | ||
| cbrenneri | ------------------TTGAAATGCCGTGCCGAGCTGCATGCTTCTTCTACATGCCCATACTATA--------TCG---TAAATGGATATGGAATGTAAAGAAGTATGTAGAACGGAAAAACACGAAACAAAAACGGCATGAATTCAA | ||
| cjaponica | -----------------------TCGCCGTGCCGAGCTGCATACTTCCT-TGCATACCCATACTTGATCCCCTGGTCG---GACAGAGATATGGAATGTAAAGAAGTATGTAGAGCGGT------------------------------- | ||
| ppacificus | AGAATCTCTCTCTCACTCCTCATTCACCGTTCCG-------TACTTCTT-TGCAGCCCCATACTTGC--------CCGCATGAAGTGGTTATGGAATGTAAAGAAGTATGT--AATGGT------CGAGGCGAGAGCACCACTAGAATCT | ||
| * ** *** * **** * * ** ******** * ********************** * ** | |||
| ----- ------------------------- ----------------- --- -------------------------------------- ----------- ----- | NM_001087279 | ||
| +++++ +++++++++++++++++++++++++ +++++++++++++++++ +++ ++++++++++++++++++++++++++++++++++++++ +++++++++++ +++++ | NM_001075644 | ||
| ----- ------------------------- ----------------- --- -------------------------------------- ----------- ----- | NM_001109726 | ||
| ----- ------------------------- ----------------- --- -------------------------------------- ----------- ----- | NM_177732 | ||
| +++++ +++++++++++++++++++++++++ +++++++++++++++++ +++ ++++++++++++++++++++++++++++++++++++++ +++++++++++ +++++ | NM_007732 | ||
| +++++ +++++++++++++++++++++++++ +++++++++++++++++ +++ ++++++++++++++++++++++++++++++++++++++ +++++++++++ +++++ | NM_214466 | ||
| +++++ +++++++++++++++++++++++++ +++++++++++++++++ +++ ++++++++++++++++++++++++++++++++++++++ +++++++++++ +++++ | NM_199473 | ||
| +++++ +++++++++++++++++++++++++ +++++++++++++++++ +++ ++++++++++++++++++++++++++++++++++++++ +++++++++++ +++++ | NM_073882 | ||
| ----- ------------------------- ----------------- --- -------------------------------------- ----------- ----- | NM_002069 | ||
| +++++ +++++++++++++++++++++++++ +++++++++++++++++ +++ ++++++++++++++++++++++++++++++++++++++ +++++++++++ +++++ | NM_013361 | ||
| ----- ------------------------- ----------------- --- -------------------------------------- ----------- ----- | NM_012727 | ||
| ----- ------------------------- ----------------- --- -------------------------------------- ----------- ----- | NM_059914 | ||
| +++++ +++++++++++++++++++++++++ +++++++++++++++++ +++ ++++++++++++++++++++++++++++++++++++++ +++++++++++ +++++ | NM_007740 | ||
| +++++ +++++++++++++++++++++++++ +++++++++++++++++ +++ ++++++++++++++++++++++++++++++++++++++ +++++++++++ +++++ | NM_152890 | ||
| +++++ +++++++++++++++++++++++++ +++++++++++++++++ +++ ++++++++++++++++++++++++++++++++++++++ +++++++++++ +++++ | NM_013256 | ||
| ----- ------------------------- ----------------- --- -------------------------------------- ----------- ----- | NM_001101755 | ||
| +++++ +++++++++++++++++++++++++ +++++++++++++++++ +++ ++++++++++++++++++++++++++++++++++++++ +++++++++++ +++++ | NM_001057654 | ||
| ----- ------------------------- ----------------- --- -------------------------------------- ----------- ----- | NM_011077 | ||
| ----- ------------------------- ----------------- --- -------------------------------------- ----------- ----- | NM_001018587 | ||
| +++++ +++++++++++++++++++++++++ +++++++++++++++++ +++ ++++++++++++++++++++++++++++++++++++++ +++++++++++ +++++ | NM_134050 | ||
| +++++ +++++++++++++++++++++++++ +++++++++++++++++ +++ ++++++++++++++++++++++++++++++++++++++ +++++++++++ +++++ | NM_198749 | ||
| cbriggsae | .(((((.(((..(((((((((((.( (((((..(((((((((. ... ...)))).))))).)))))).)))))))))))..))). .....))))). | 1.000 -40.00 | |
| cremanei | (((((((((..(((((((((((.( (((((..(((((((((. ... ...)))).))))).)))))).)))))))))))..)))) ........))))).......... | 0.989 -40.50 | |
| celegans | ((((((..........((((..(((..(((((((((((.( (((((..(((((((((. ... ...)))).))))).)))))).)))))))))))..))). .)))).........)))))) | 0.990 -44.91 | |
| cbrenneri | .(((((((((((.(((..(((((((((((((.(((((..(((((((((. ... ...)))).))))).))))))))))))))))))..))).................)))))))...)))). | 0.931 -45.27 | |
| cjaponica | .......((((..(((((((((((.( (((((..((((((((..(((.......) ))..))).))))).)))))).)))))))))))..)))) | 1.000 -39.20 | |
| ppacificus | (((.(((..(((((...((((....((((((.(( (((((((( ((((...(((((..... ((((.....)))).)))))..)))))))))))))). )))))) .)))).))))).......))).))) | 0.988 -44.90 |
| cbriggsae | chromosome:chrI:7435815:7435908:-1 | Opposite_strand|Intronic_non-coding|NM_001087279|fbxl5 ## Same_strand|Intronic_coding|NM_001075644|ZNF180 ## Opposite_strand|Intronic_coding|NM_001109726|zgc:171740 ## Same_strand|Intronic_non-coding|NM_001057654|Os03g0723800 ## {Repeats: no} ## {MIR: cbr-mir-1} |
| cremanei | chromosome:chrUn:145319807:145319911:1 | intergenic |
| celegans | chromosome:chrI:6172652:6172769:-1 | intergenic ## {MIR: cel-mir-1} |
| cbrenneri | chromosome:chrUn:167631841:167631961:-1 | intergenic |
| cjaponica | chromosome:chrUn:124179219:124179310:1 | intergenic |
| ppacificus | chromosome:chrUn:9699697:9699822:-1 | intergenic |
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