miR-Intess: cbr-mir-124

cbr-mir-124

Cloning frequencies
absolute	AF16
cbr-mir-124 3arm	39
normalized	AF16
cbr-mir-124 3arm	0.102

block2104 (miRBase cbr-mir-124) [miRNAknown_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-124	0.001	no	no	0.57/0.60	19/21/0.97	0.0	0.0	38	0	1	0	18	9	3arm	1	nd	0.15	2	39	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------------------------------AAGGCAC---------------------------------------------	39	miR-124
		len	cloning frequencies
			AF16
	-----------------------------------------------------------------------------------------TAAGGCACGCGGTGAATGCC---------------------------------	20	38
	-----------------------------------------------------------------------------------------TAAGGCACGCGGTGAATGC----------------------------------	19	1
cbr-miR-124	-----------------------------------------------------------------------------------------TAAGGCACGCGGTGAATGCCA--------------------------------	21	-
cbriggsae	--------------------------TTCCAGTCGTCATATGGCGTCCACCTGAGTGACTTTAGTG----GACATGTATAGTTTCCAACTAAGGCACGCGGTGAATGCCACGTGGCAATTCTGGGAT---------------
cremanei	CTATTCTTATGTCACTGAT---------CCAGATGTCACTTGGCATACACCTGAGTGACTTTAGTG----GACATCTCAAGTTTCCAACTAAGGCACGCGGTGAATGCCACGTGGCAATTCTGGAGACTTCTCAAAGGTTGG
celegans	-----------------------------------------GGCATGCACCCTAGTGACTTTAGTG----GACATCTAAGTCTTCCAACTAAGGCACGCGGTGAATGCC---------------------------------
cbrenneri	------TTTTGTCATCGATACTAATGCCTCAGTTGTCATCTGGCATACACCTGAGTGACTTTAGTG----GACATCTGAAGTTTCCAACTAAGGCACGCGGTGAATGCCACGTGGCAACT-TGAGGTCTATTGTAAATAAGG
ppacificus	----TGAAGGGTCGTTAAT----------------TCACTTCGCTTTCACC--GGTGACTTTAGTGCTTTGTCACAGAGAG-----AACTAAGGCACGCGGTGAATGCCAAGAGAATAAC---GAATCCATCA---------
cjaponica	-----CTTCGTTAGCCGAT-----TGTCCCTGTTGTCATCTGGCGTCCACCTGAGTGACTTTAGTG----GACAATTTTTGGTTCCAACTAAGGCACGCGGTGAATGCCACGTGGCAACCGGGGACTCGATTCTCGTGG---
	** * ** ********** * *********************
	----- ---------------------------------------- --------------------------------------------------------- -----	NM_168571
	----- ---------------------------------------- --------------------------------------------------------- -----	NM_208412
	----- ---------------------------------------- --------------------------------------------------------- -----	NM_209040
	+++++ ++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_001123230
	----- ---------------------------------------- --------------------------------------------------------- -----	NM_116969
	----- ---------------------------------------- --------------------------------------------------------- -----	NM_001126769
	+++++ ++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_069848
cbriggsae	((((((..((((..((((((.((((...(((.(((((((( ((.((.....)).)))).)))))))))..)))).))))))..))))....)))))).	1.000 -43.00
cremanei	(((..(((.((.......( (((((((((((.((((((.((((...(((.(((((((( ((.((.....)).)))).)))))))))..)))).)))))).))))))..)))))).......)))))..)))	0.975 -49.94
celegans	(((((.((((...(((.(((((((( (((......))))....))))))))))..)))).)))))	1.000 -26.50
cbrenneri	.(((((...(((((.....((((((((((((((.((((((.((((...(((.(((((((( ((.((.....)).)))).)))))))))..)))).)))))).))))))))) .))))).)))))...))))).	0.977 -52.50
ppacificus	.((.((((((((.(( ((.(((.((.(((((( ((((.(((((((.(((((...))))).. .)))))))))).))))))).)).))).))))))) )).))).)).	1.000 -44.10
cjaponica	((.((..((.(((. .((((((((((((((.((((((.((((...(((.(((((((( (((........)).))).)))))))))..)))).)))))).)))))))).))))))))).))..)).))	0.954 -53.70

cbriggsae	chromosome:chrIV:5050234:5050330:-1	Opposite_strand\|Intronic_coding\|NM_168571\|CG32133 ## Same_strand\|Intronic_coding\|NM_001123230\|col4a5 ## Opposite_strand\|Intronic_non-coding\|NM_116969\|GRF1 ## {Repeats: no} ## {MIR: cbr-mir-124}
cremanei	chromosome:chrUn:80236599:80236727:1	Same_strand\|Intronic_coding\|NM_069848
celegans	chromosome:chrIV:11871689:11871825:1	Same_strand\|Intronic_coding\|C29E6.2 ## {MIR: cel-mir-124}
cbrenneri	chromosome:chrUn:162403843:162403973:1	Same_strand\|Intronic_coding\|NM_069848
ppacificus	chromosome:chrUn:138694799:138694901:-1	intergenic ## {SimpF: trf}
cjaponica	chromosome:chrUn:39137220:39137344:1	Same_strand\|Intronic_coding\|NM_069848 ## Opposite_strand\|Intronic_coding\|NM_104618

miR-Intess™

cbr-mir-124

block2104 (miRBase cbr-mir-124) [miRNAknown_cloningHIGH_randfoldOK]