miR-Intess: cbr-mir-228

cbr-mir-228

Cloning frequencies
absolute	AF16
cbr-mir-228 5arm	77
normalized	AF16
cbr-mir-228 5arm	0.201

block2189 (miRBase cbr-mir-228) [miRNAknown_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-228	0.001	no	no	0.39/0.48	18/23/0.95	0.0	0.0	55	0	1	0	16	3	5arm	1	nd	0.17	1	77	1	na	na

		reads	miRBase family seed
seed	---------------------------------------AUGGCAC----------------------------------------------------------------------------------------------------	77	miR-228
		len	cloning frequencies
			AF16
cbr-miR-228	--------------------------------------AATGGCACTGCATGAATTCACGG-------------------------------------------------------------------------------------	23	55
	--------------------------------------AATGGCACTGCATGAATTCACG--------------------------------------------------------------------------------------	22	11
	--------------------------------------AATGGCACTGCATGAATTCA----------------------------------------------------------------------------------------	20	7
	--------------------------------------AATGGCACTGCATGAATT------------------------------------------------------------------------------------------	18	4
cbriggsae	----------------------ATCCCACCCTGTTCGCAATGGCACTGCATGAATTCACGG--ATGCAAAGCGACAGA------------CCGCGGATCATGCGGTACCATAGCTGACGGTGGTGAGAT-----------------
cremanei	--CTGGCGAGACTCTGGAAAGAATCCTATCTTGTTCGCAATGGCACTGCATGAATTCACGG--ATGCATTGCGACAGA------------CCGCGGATCATGCGGTACCATAGCGGACAGTGGTGAGATATTGAGAATATTGGTAG
celegans	CTTTGGCGAGACATTTTCC---TCCTTATCCCGTTCGCAATGGCACTGCATGAATTCACGGCTATGCATAACGACAGA------------CCGCGGATCATACGGTACCATAGCGGACGGTGATGAGGTTAATGAAGTAGTGAGAG
cbrenneri	--------------------------------------AATGGCACTGCATGAATTCACGG--ATGCATTGCGACAGA------------CCGCGGATCATGCGGTACCATA----------------------------------
cjaponica	-----------------------GCGCCTCCGTTCCGCAATGGCACTGCATGAATTCACGGC-TTGCATCCGGCCACACGGACATTTACGCCGCGGATTGTGCGGTACCATAGCGGACGGACGGGCGGCGC---------------
ppacificus	--------------------------------------GATGGCACCGCGCG---TCATGT--TTGCAT---GTTAGA-----------------GATCACACAGCGAAA-AGCATGAAGTGGTGCCACC----------------
	***** * *** * **** * * * *** * * * *
	+++++ +++++++++++++++++++++++++++++++++++++++ +++++++++++++++ +++++++++++++++++++++++++++++++++++++++ +++++	NM_066961
cbriggsae	(((.(((((((((.((.((((.(((((((((.(((.((( .((........)).. ))).)))))))))))).)))).)).))))).)))).)))	1.000 -42.20
cremanei	(((.(((...(((.((....(((.((((((((((((.((((.((((((((.((((.((( .((........)).. ))).)))))))))))).)))).)))))))).)))).))).)).)))...))).)))	0.848 -47.20
celegans	((((.((...((.((.... .(((((((((((((((.((((.((((.(((.((((.(((...((........)).. ))).))))))).)))).)))).)))))))).))))))).....)).)).)).))))	0.997 -49.90
cbrenneri	.((((.((((((((.((((.((( .((........)).. ))).)))))))))))).)))).	0.997 -24.70
cjaponica	(((((((((((((((.((((.(((((((.(((((.(((( .....((((......)))).......)))).)))))))))))).)))).)))))...))))).)))))	1.000 -56.60
ppacificus	..(((((((((... (((((( ((((.( ((.... ......))))))).. .)))))).)))))))))..	1.000 -27.70

cbriggsae	chromosome:chrIV:8555778:8555870:-1	Same_strand\|Intronic_non-coding\|NM_066961\|W09D10.4 ## {Repeats: no} ## {MIR: cbr-mir-228}
cremanei	chromosome:chrUn:60549579:60549708:-1	intergenic
celegans	chromosome:chrIV:5561992:5562122:1	intergenic ## {MIR: cel-mir-228}
cbrenneri	chromosome:chrUn:70281151:70281283:-1	intergenic
cjaponica	chromosome:chrUn:34732342:34732448:1	intergenic
ppacificus	chromosome:chrUn:153526011:153526143:1	Opposite_strand\|Intronic_coding\|NM_133373 ## Same_strand\|Intronic_coding\|NM_013355

miR-Intess™

cbr-mir-228

block2189 (miRBase cbr-mir-228) [miRNAknown_cloningHIGH_randfoldOK]