miR-Intess: cbr-mir-234

cbr-mir-234

Cloning frequencies
absolute	AF16
cbr-mir-234 3arm	1
normalized	AF16
cbr-mir-234 3arm	0.003

block855 (miRBase cbr-mir-234) [miRNAknown_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-234	0.002	no	no	0.38/0.38	21/21/1.00	0.0	0.0	1	0	1	0	16	7	3arm	1	nd	0.10	1	1	1	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------------------------------UAUUGCU------------------------------------------------	1	miR-234
		len	cloning frequencies
			AF16
cbr-miR-234	-----------------------------------------------------------------------------------TTATTGCTCGAGAATACCCTT-----------------------------------	21	1
cbriggsae	--------------ACTCTAGCAAA-----GATCAAACGGTATTCCTGAGTGAATAATAAAAATG-------AGTCCATTCTATTATTGCTCGAGAATACCCTTTGACAAGC---TGAAAAGT----------------
cremanei	-GATGAATGGTAAGTGGTGAACCAA-----GCTCAAACGGTATTCGACGGTGAATAATAAAAATGACATTGCGACTCATTCTATTATTGCTCGAGAATACCCTTTGACACGG---TTCACCTTTTTTTTGGTATTTGTC
celegans	CTATGTAAGTTGAAACACAAAAAAT-----GATCAAACGGTATTCCAGAGTTGATAATAAAAATG-CGTCAGTCCGCAATCTATTATTGCTCGAGAATACCCTTTGACTACTATGTGTACGTTTTTATTAG--------
cbrenneri	------------GAATTCATGCAACAATCAGCTCAAACGGTATTCTTTGGTTAATAATAAGGATGGCATCACGACTCATTATATTATTGCTCAAGAATACCCTTTGACAAA----TGTCGCGTGACATC----------
cjaponica	------------AAAAACACACCAC-----GTTCGATAGGTGTTCCAGAGTTGATAATAATCGTGCCAT--GTGCACATT-TATTATTGCTTGAGAATACCCCTCGGCAGAT---TGTGTTCTGTTTTT----------
ppacificus	--------GATGGATTTCGAGGTCT-----GTTTAGAGGATAT---------------------------------CGATCAACTATTGCTCGAGAGATTCCATT----------------------------------
	* * * * * * * * ***** * ** *
	+++++ +++++++++++ +++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++ ++++++++ +++++	NM_001111076
	+++++ +++++++++++ +++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++ ++++++++ +++++	NM_135942
	+++++ +++++++++++ +++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++ ++++++++ +++++	NM_001105037
	+++++ +++++++++++ +++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++ ++++++++ +++++	NM_001078409
	+++++ +++++++++++ +++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++ ++++++++ +++++	NM_028335
	+++++ +++++++++++ +++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++ ++++++++ +++++	NM_021952
	+++++ +++++++++++ +++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++ ++++++++ +++++	NM_182531
	----- ----------- ----------------------------------- ---------------------------------------- -------- -----	NM_012560
	----- ----------- ----------------------------------- ---------------------------------------- -------- -----	NM_070558
	----- ----------- ----------------------------------- ---------------------------------------- -------- -----	NM_016734
	+++++ +++++++++++ +++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++ ++++++++ +++++	NM_006962
	+++++ +++++++++++ +++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++ ++++++++ +++++	NM_003428
	+++++ +++++++++++ +++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++ ++++++++ +++++	NM_001013387
	+++++ +++++++++++ +++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++ ++++++++ +++++	NM_001007088
	+++++ +++++++++++ +++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++ ++++++++ +++++	NM_001002954
	+++++ +++++++++++ +++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++ ++++++++ +++++	NM_001127372
cbriggsae	....((((... ..(((((.(((((((.(((((.(((((((..(((( ....)))).)))))))))))).))))))).)))))...)) ))......	0.880 -26.60
cremanei	((..((((.((((.((((((((.. ..(((((.(((((((..((((.(((((((..(((((.........))))).))))))))).)).))))))).)))))...)) )))))).....)))).))))..))	1.000 -40.40
celegans	(((.(((((.....(((((...... ..(((((.(((((((..(((.((((((((....(( ((......))))...)))))))))))..))))))).)))))......))))).....))))))))	0.875 -30.04
cbrenneri	....((((((.(((......(((((.(((((((((.((.((((((((..(((((.........))))).)))))))))).))))))))).))))).... ))).))))))....	0.999 -32.00
cjaponica	(((((((...((( (.((((..(((((((..(((.(((((((((..((((... ..))))..) )))))))))))..)))))))..))))..... ))))...)))))))	0.980 -32.00
ppacificus	(((((((((((((.... ...(((..(((.. ..)))..)))...)))))))...))))))	0.667 -14.10

cbriggsae	chromosome:chrII:319385:319478:1	Same_strand\|Intronic_coding\|NM_001111076\|Zfp182 ## Same_strand\|Intronic_non-coding\|NM_001078409\|zf(c2h2)-7 ## Opposite_strand\|Intronic_non-coding\|NM_012560\|Foxg1 ## {Repeats: no} ## {MIR: cbr-mir-234}
cremanei	chromosome:chrUn:46416256:46416385:1	intergenic
celegans	chromosome:chrII:14466154:14466278:-1	intergenic ## {MIR: cel-mir-234}
cbrenneri	chromosome:chrUn:164688025:164688137:-1	intergenic
cjaponica	chromosome:chrUn:86889440:86889545:-1	intergenic
ppacificus	chromosome:chrUn:142403762:142403895:1	Same_strand\|Boundary_coding\|NM_173471 ## Same_strand\|Intronic_coding\|NM_001020069 ## Opposite_strand\|Intronic_coding\|NM_134696 ## Same_strand\|Boundary_non-coding\|NM_143158

miR-Intess™

cbr-mir-234

block855 (miRBase cbr-mir-234) [miRNAknown_randfoldOK]