miR-Intess: cbr-mir-236

cbr-mir-236

Cloning frequencies
absolute	AF16
cbr-mir-236 3arm	225
normalized	AF16
cbr-mir-236 3arm	0.587

block663 (miRBase cbr-mir-236) [miRNAknown_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-236	0.001	no	no	0.32/0.50	18/23/0.96	0.0	0.0	140	0	1	0	18	6	3arm	1	nd	0.14	1	225	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------AAUACUG----------------------------------------------------	221	miR-236
seed	---------------------------------------------------------------------------------------CUGUCAG------------------------------------------------	2	novel
seed	------------------------------------------------------------------------------------AUACUGU---------------------------------------------------	2	novel
		len	cloning frequencies
			AF16
	----------------------------------------------------------------------------------TAATACTGTCAGGTAATGACGC--------------------------------------	22	140
cbr-miR-236	----------------------------------------------------------------------------------TAATACTGTCAGGTAATGACGCT-------------------------------------	23	39
	----------------------------------------------------------------------------------TAATACTGTCAGGTAATGACG---------------------------------------	21	35
	----------------------------------------------------------------------------------TAATACTGTCAGGTAATG------------------------------------------	18	5
	-----------------------------------------------------------------------------------AATACTGTCAGGTAATGACG---------------------------------------	20	2
	----------------------------------------------------------------------------------TAATACTGTCAGGTAATGA-----------------------------------------	19	1
	----------------------------------------------------------------------------------TAATACTGTCAGGTAATGAC----------------------------------------	20	1
	--------------------------------------------------------------------------------------ACTGTCAGGTAATGACGCT-------------------------------------	19	1
	--------------------------------------------------------------------------------------ACTGTCAGGTAATGACGC--------------------------------------	18	1
cbriggsae	-----------------AAGTGACCAATGTCCA---GCGTCTTACC--TGTTCAATATTTAGACTGACCAAACCCATAGCTCTAATACTGTCAGGTAATGACGCTGGATAGTCTTGTCATTG--------------------
cremanei	----CTGTCCTATTCTTTGGTGACCGATGTCCA---GCGTCTTACC--TGTTCAATATTTAGACTGATTAGCTCATGAGATCTAATACTGTCAGGTAATGACGCTGGATTATCTTGTCATTTATG----ATAAGCAACACAG
celegans	-----------------------------------------TTACC--TGTTCAATATTTAGACTGACTAT-CAAAGAGATCTAATACTGTCAGGTAATGACGC--------------------------------------
cbrenneri	GCTACTGTCCTATTCTGAGGTGACCGATGTCCA---GCGTCTTACC--TGTTCAATATTTAGACTAAC-ACATCAAGAGATCTAATACTGTCAGGTAATGACGCTGGGTAATAGTGTCGCTTATTTGAAATCAACGGTAAGT
cjaponica	-----GTTATTATGTTTCCACGAACGAATTCCACTTATGACGTTCCGATGTTCCGCATTT--TTTTACTGTGGTCTCACAGCGAATACTGCGGAACATCGGAGCATCGCAAGAAAGATTTCCTTC----AGGAACAGTTAAT
	* * ** * * * * ******* * * **
	----- ---------------- ---------- -------------------------------------------------------------------------- -----	NM_004845
	----- ---------------- ---------- -------------------------------------------------------------------------- -----	NM_207682
	----- ---------------- ---------- -------------------------------------------------------------------------- -----	NM_114884
	+++++ ++++++++++++++++ ++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_001047951
	----- ---------------- ---------- -------------------------------------------------------------------------- -----	NM_001093430
	+++++ ++++++++++++++++ ++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_000493
cbriggsae	.((((((...(((((( (((((((((( ((..((.((((.((((((..........))).))))))).)).))))))).))))))))))).....)))))).	1.000 -38.50
cremanei	((((.((..((...((((((.(((((((( (((((((((( ((..((.((.(((((((.((......)).)).))))))).)).))))))).)))))))))).)))..))))))...) )..))....))))	0.939 -43.10
celegans	((((( ((..((.((.(((((((...... .....)).))))))).)).)))))))......	0.998 -11.10
cbrenneri	..((((((....(((..(((((((..((..((( (((((((((( ((..((.((.(((((((... ........)).))))))).)).))))))).))))))))...))...)))))))....)))....))))))...	0.995 -42.90
cjaponica	((((...((((((...(((.(((.((..(((.(((.((((((((((((((((... .((..(((((....)))))..))...)))))))))))))))).))).)))...)).))).))) .))))))..))))	0.886 -50.90

cbriggsae	chromosome:chrII:5133851:5133950:-1	Opposite_strand\|Intronic_non-coding\|NM_004845\|PCYT1B ## Opposite_strand\|Intronic_coding\|NM_114884\|KICP-02 ## Same_strand\|Intronic_coding\|NM_001047951\|LOC499796 ## Same_strand\|Intronic_non-coding\|NM_000493\|COL10A1 ## {Repeats: no} ## {MIR: cbr-mir-236}
cremanei	chromosome:chrUn:132170869:132170997:1	Opposite_strand\|Intronic_coding\|NM_205265
celegans	chromosome:chrII:7030055:7030194:-1	Opposite_strand\|Boundary_non-coding\|C52E12.1.1 ## {MIR: cel-mir-236}
cbrenneri	chromosome:chrUn:68604093:68604228:-1	Same_strand\|Intronic_coding\|NM_023651
cjaponica	chromosome:chrUn:127532689:127532819:-1	Same_strand\|Intronic_coding\|NM_067195

miR-Intess™

cbr-mir-236

block663 (miRBase cbr-mir-236) [miRNAknown_cloningHIGH_randfoldOK]