miR-Intess: cbr-mir-239b

cbr-mir-239b

Cloning frequencies
absolute	AF16
cbr-mir-239b 5arm	2
normalized	AF16
cbr-mir-239b 5arm	0.005

block4614 (miRBase cbr-mir-239b) [miRNAknown_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-239b	0.001	no	no	0.36/0.38	21/22/1.00	0.0	0.0	2	0	1	0	18	1	5arm	1	nd	0.14	2	2	1	na	na

		reads	miRBase family seed
seed	-------------------UUGUACU--------------------------------------------------------------------------------------------------	2	miR-239a
seed	--------------------UGUACUG-------------------------------------------------------------------------------------------------	0	miR-239b
		len	cloning frequencies
			AF16
	------------------TTTGTACTGCACAAA---AGTACTG---------------------------------------------------------------------------------	22	2
cbr-miR-239b	-------------------TTGTACTGCACAAA---AGTACTG---------------------------------------------------------------------------------	21	-
cbriggsae	TAGGACAGACATGCAATTTTTGTACTGCACAAA---AGTACTGACTATTT---------CTCAGCGCTTTTGTCCAGTGCAAGAATGGCAAGAGCTGGTCCATTTTTTTAGGGATTAAACAATT
cremanei	------------------TTTGTACTGCACAAA---AGCTCTGACTGCTC-TGATATGGCTCAGCACTTTTGTC-TGTGCAAA-----------------------------------------
celegans	------------------TTTGTACTACACAAA---AGTACTGGTCATTTAAGTTGAGGCTCAGCACTTTTGTGGTGTGCAAA-----------------------------------------
cbrenneri	------------------TTTGTACTTCACAAG---AGTACTGGCGGTTC-AGGTCCGGCTCAGAACTTTTGTGGGGTGCAAG-----------------------------------------
cjaponica	-------GCTTGACAATTTTTGTACTACACAAA---AGTTCTGTTCAGCT---TCTATGTACAGCTCGTTTGTCCAGTGCAAAAATGGTTGAGC------------------------------
ppacificus	------------------CTTGTACTTGACGCAGTCAACCGTGCCGATCT--------ACGGAAGGAAATTGTC-AGTACAGA-----------------------------------------
	***** * ** * ** **
	-------------------------------------- -------------- ----------------------------------------------------------------------	NM_001099298
	++++++++++++++++++++++++++++++++++++++ ++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_077585
cbriggsae	..((((((...(((.((((((((((((.((((( ((..((((...... .))))..))))))).)))))))))))).)))....)).)))).......................	1.000 -39.90
cremanei	.((((((...((((( ((..((((..(((. ......)))))))..))))))). .)))))).	1.000 -17.90
celegans	.((((((..(((((( (((.((((((.((......))))).))).)))))))))..)))))).	1.000 -23.70
cbrenneri	.((((((..(((((( (((.(((((((... ....)).)).))).)))))))))..)))))).	1.000 -30.30
cjaponica	(((..((.(((((((((((..((((( ....((((.((... ....)).))))....)))))..))))))))))).))..)))	1.000 -28.10
ppacificus	.((((((.(((((...((..(((((......) ))))...))...)))) ))))))).	0.999 -17.80

cbriggsae	chromosome:chrX:15174122:15174233:-1	Opposite_strand\|Intronic_non-coding\|NM_001099298\|Scn2a1 ## Same_strand\|Intronic_non-coding\|NM_077585\|Y62H9A.5 ## {Repeats: no} ## {MIR: cbr-mir-239b}
cremanei	chromosome:chrUn:26918260:26918411:1	intergenic
celegans	chromosome:chrX:11791195:11791346:-1	intergenic ## {MIR: cel-mir-239b}
cbrenneri	chromosome:chrUn:34417661:34417812:1	intergenic
cjaponica	chromosome:chrUn:61792351:61792431:1	intergenic
ppacificus	chromosome:chrUn:173903385:173903536:1	Opposite_strand\|Intronic_coding\|NM_001047239

miR-Intess™

cbr-mir-239b

block4614 (miRBase cbr-mir-239b) [miRNAknown_randfoldOK]