cbr-mir-244
| absolute | AF16 |
| cbr-mir-244 5arm | 11 |
| cbr-mir-244 3arm | 4 |
| normalized | AF16 |
| cbr-mir-244 5arm | 0.029 |
| cbr-mir-244 3arm | 0.010 |
sblock10 (miRBase cbr-mir-244) [miRNAknown_cloningOK_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-244 | 0.001 | no | no | 0.35/0.45 | 20/24/1.00 | 0.0 0.0 | 0.0 0.0 | 10 4 | 0 0 | 1 1 | 0 0 | 16 17 | 2 5 | 5arm 3arm | 1 1 | nd nd | 0.08 0.00 | 2 0 | 15 | 1 | 2 | 0 |
| reads | miRBase family seed | ||
| seed | ------------------------------------CUUUGGU----------------------------------------------------------------------------------------- | 11 | miR-244 |
| seed | -----------------------------------------------------------------------------------ACCGCUU------------------------------------------ | 4 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| cbr-miR-244 | -----------------------------------TCTTTGGTTGTACAAAGTGGTATG------------------------------------------------------------------------- | 24 | 10 |
| ----------------------------------------------------------------------------------TACCGCTTTACAGCTA---AAGG--------------------------- | 20 | 4 | |
| -----------------------------------TCTTTGGTTGTACAAAGTGGTAT-------------------------------------------------------------------------- | 23 | 1 | |
| cbriggsae | --------------CCCAAATTTCTCGATT-----TCTTTGGTTGTACAAAGTGGTATG-GCTCTCT---------TGCTCATACCGCTTTACAGCTA---AAGGAATCGATTGATTTTGGA---------- | ||
| cremanei | ---TATTATTCCTTCTCCAGTTTCTCGATC-----TCTTTGGTTGTACAAAGTGGTATG-GCACTTCTCAATAGTCTGCTCATACCGCTTTTCGGCTA---AAGGAATCGA--GTCTTTGGTGTCATTAATA | ||
| celegans | --------------CCTCCATATCTCAATC-----TCTTTGGTTGTACAAAGTGGTATG-GCTCATC----GAATAAGCACATACTGCTTTTCAGCTA---AAGGAATTGA--GATTTTGTAGG-------- | ||
| cbrenneri | ATTCTGATTTTTCCGCCCCATTTCTCGATC-----TCTTTGGTTGTACAAAGTGGTATG-GCAATTTCATTAAAAATGCTCATACCGCTTTTCAGCTG---AAGGAATCGT--GTTTGTGGGTAATTAGAAT | ||
| cjaponica | ----------------GCCGATTCTCGATC-----TCTTTGGTTGTACAAAGTGGTATGAGTACTATAAGAGGCAATG--CATACCGCTTTTCAACTG---AAGGAATCGA--GTGTTTGGC---------- | ||
| ppacificus | -----------------TCTTTGGTTGACCTTTGATCTTTGGT---------TGATCTTTGATCTTTGAAGGATCAAG-------------GCAGCTAACGAAGAAAACAA--GAGTAAGAAGGAGA----- | ||
| * * ******** ** * * * * * ** *** ** * * * | |||
| ----- ---------------- ------------------------ ------- ---------------------- --------------------- ----- | NM_080376 | ||
| ----- ---------------- ------------------------ ------- ---------------------- --------------------- ----- | NM_166030 | ||
| +++++ ++++++++++++++++ ++++++++++++++++++++++++ +++++++ ++++++++++++++++++++++ +++++++++++++++++++++ +++++ | NM_131292 | ||
| +++++ ++++++++++++++++ ++++++++++++++++++++++++ +++++++ ++++++++++++++++++++++ +++++++++++++++++++++ +++++ | NM_058465 | ||
| ----- ---------------- ------------------------ ------- ---------------------- --------------------- ----- | NM_025451 | ||
| +++++ ++++++++++++++++ ++++++++++++++++++++++++ +++++++ ++++++++++++++++++++++ +++++++++++++++++++++ +++++ | NM_005379 | ||
| +++++ ++++++++++++++++ ++++++++++++++++++++++++ +++++++ ++++++++++++++++++++++ +++++++++++++++++++++ +++++ | NM_005235 | ||
| +++++ ++++++++++++++++ ++++++++++++++++++++++++ +++++++ ++++++++++++++++++++++ +++++++++++++++++++++ +++++ | NM_001042599 | ||
| +++++ ++++++++++++++++ ++++++++++++++++++++++++ +++++++ ++++++++++++++++++++++ +++++++++++++++++++++ +++++ | NM_170794 | ||
| +++++ ++++++++++++++++ ++++++++++++++++++++++++ +++++++ ++++++++++++++++++++++ +++++++++++++++++++++ +++++ | NM_001123230 | ||
| +++++ ++++++++++++++++ ++++++++++++++++++++++++ +++++++ ++++++++++++++++++++++ +++++++++++++++++++++ +++++ | NM_001004111 | ||
| ----- ---------------- ------------------------ ------- ---------------------- --------------------- ----- | NM_003025 | ||
| cbriggsae | ((.(((((..(((((( ((((((((((((..(((((((((( ((..... .)).)))))))))))))))))) ))))))))))..))))).)). | 1.000 -46.20 | |
| cremanei | (((((........((((...((((((. .(((((((((...((((((((((( (((...((....))..))).))))))))))).)))))) )))..))))) )...))))......))))) | 0.998 -42.84 | |
| celegans | (((.((.((((((((. .(((((((((...((((..((((( (((.... .....))).)))))..)))).)))))) )))..))))) )))..)).))) | 1.000 -40.20 | |
| cbrenneri | (((((((((.....((((((.....((((. .(((..((((...((((((((((( (((.(((.....))).))).))))))))))).)))).. )))..)))). ...)).))))))))))))) | 1.000 -47.30 | |
| cjaponica | (((((..((((((. .(((..((((...(((((((((((....((.....))...... ))))))))))).)))).. )))..))))) )...))))) | 1.000 -41.90 | |
| ppacificus | ((.(((((((.((.(((((((((... .((((...))))....)))))))))) )))))))).))......... .............. | 0.908 -22.40 |
| cbriggsae | chromosome:chrI:2688433:2688522:1 | Opposite_strand|Intronic_coding|NM_080376|mam ## Same_strand|Intronic_coding|NM_131292|col2a1a ## Same_strand|Intronic_non-coding|NM_058465|src-1 ## Opposite_strand|Intronic_non-coding|NM_025451|Camk2n1 ## {Repeats: no} ## {MIR: cbr-mir-244} |
| cremanei | chromosome:chrUn:17603862:17603979:-1 | Same_strand|Intronic_coding|NM_000280 |
| celegans | chromosome:chrI:4684322:4684416:-1 | intergenic ## {MIR: cel-mir-244} |
| cbrenneri | chromosome:chrUn:31651738:31651858:1 | Same_strand|Intronic_coding|NM_203889 |
| cjaponica | chromosome:chrUn:44620221:44620314:-1 | Same_strand|Intronic_coding|NM_143141 |
| ppacificus | chromosome:chrUn:104830954:104831039:1 | Same_strand|Intronic_coding|NM_016621 ## {Repeats: GA-rich 1 49 1 class=Low_complexity} ## {SimpF: trf} |
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