miR-Intess: cbr-mir-245

cbr-mir-245

Cloning frequencies
absolute	AF16
cbr-mir-245 3arm	3
normalized	AF16
cbr-mir-245 3arm	0.008

block134 (miRBase cbr-mir-245) [miRNAknown_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-245	0.001	no	no	0.55/0.55	22/22/1.00	0.0	0.0	3	0	1	0	11	5	3arm	1	nd	0.18	3	3	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------UUGGUCC--------------------------------------	3	miR-245
		len	cloning frequencies
			AF16
cbr-miR-245	------------------------------------------------------------------ATTGGTCCCCTCCAAGTAGCTC------------------------	22	3
cbriggsae	------------TCAATGTCGAAGAGCTGCTTGCAAGGTACCTAATTGTTTGA--CTCTATTCTCAATTGGTCCCCTCCAAGTAGCTCTATTGCATTGT-------------
celegans	-------------CAATGTTGGAGAGCTATTTGCAAGGTACCTAATTGTTTGATTATTGATTCTCAATTGGTCCCCTCCAAGTAGCTCTATTGCATTG--------------
cbrenneri	CGAAAAAAAAATTCAATGCCGTGGAGCTGCTTGCAAGGTACCTAATTGTTTGA-AATTCATTCTCAATTGGTCCCCTCCAAGTAGCTCTATTGCATTGTGTTTGTTTGTTTG
cjaponica	-----------------------GAGCTGTTTGCAAGGTACCTAATTGTTTGA--AATGATTCTCAATTGGTCCCCTCCAAGCAGCTC------------------------
	*** ******************* ******************* ***
	+++++ +++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_001087019
	+++++ +++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_011380
	----- ----------------------------------------- -------------------------------------------- -----	NM_020433
	+++++ +++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_059033
	----- ----------------------------------------- -------------------------------------------- -----	NM_080788
	----- ----------------------------------------- -------------------------------------------- -----	NM_001024857
	----- ----------------------------------------- -------------------------------------------- -----	NM_001024856
cbriggsae	.(((((.((((((((((((((...((.(((.(((((...(( ......)).)))))))).))...))))))))))).)))))))).	1.000 -31.90
celegans	((((((...(((((((((((...((.(((.(((((...((........)).)))))))).))...)))))))))))...))))))	0.999 -31.10
cbrenneri	((((....((((.((((((.(((((((((((((...((.(((.(((((...(( (.....))).)))))))).))...))))))))))))).)))))).)))).))))....	1.000 -41.10
cjaponica	((((((((((...((.(((.(((((...(( (....))).)))))))).))...))))))))))	1.000 -23.90

cbriggsae	chromosome:chrI:6757247:6757331:-1	Same_strand\|Intronic_non-coding\|NM_001087019\|nr2f2 ## Opposite_strand\|Intronic_coding\|NM_020433\|JPH2 ## Same_strand\|Intronic_coding\|NM_059033\|C10H11.7 ## {Repeats: no} ## {MIR: cbr-mir-245}
celegans	chromosome:chrI:7887372:7887456:1	intergenic ## {MIR: cel-mir-245}
cbrenneri	chromosome:chrUn:154227073:154227183:1	intergenic
cjaponica	chromosome:chrUn:65682803:65682927:-1	intergenic

miR-Intess™

cbr-mir-245

block134 (miRBase cbr-mir-245) [miRNAknown_randfoldOK]