cbr-mir-246
| absolute | AF16 |
| cbr-mir-246 5arm | 2 |
| cbr-mir-246 3arm | 10 |
| normalized | AF16 |
| cbr-mir-246 5arm | 0.005 |
| cbr-mir-246 3arm | 0.026 |
sblock39 (miRBase cbr-mir-246) [miRNAknown_cloningOK_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-246 | 0.001 | no | no | 0.33/0.43 | 20/22/1.00 | 0.0 0.0 | 0.0 0.5 | 2 10 | 0 0 | 1 1 | 0 0 | 17 15 | 5 7 | 5arm 3arm | 1 1 | nd nd | 0.10 0.10 | 1 1 | 12 | 1 | 1 | 2 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------UACAUGU-------------------------------------------- | 10 | miR-246 |
| seed | ------------------------------------CCUGGCC-------------------------------------------------------------------------------------- | 2 | novel |
| len | cloning frequencies | ||
| AF16 | |||
| -----------------------------------------------------------------------------TTACATGTATTGGGTAGGAGC------------------------------- | 21 | 5 | |
| -----------------------------------------------------------------------------TTACATGTATTGGGTAGGAG-------------------------------- | 20 | 5 | |
| -----------------------------------ACCTGGCCAATATTATGTAAT------------------------------------------------------------------------- | 21 | 2 | |
| cbr-miR-246 | -----------------------------------------------------------------------------TTACATGTATTGGGTAGGAGCT------------------------------ | 22 | - |
| cbriggsae | ------------------CCTAGTGATAAAACAGCACCTGGCCAATATTATGTAATA--TCAGAAGCAAATTGATTATTACATGTATTGGGTAGGAGCTGTTCAAGCTATGGT---------------- | ||
| cremanei | GCAGATATTCTGTTCAGTCCAAACAATAGAACAGCACCTGGCCGATTTCATGTAATA--TCTGAAAAGAAAAGA-TATTACATGTATCGGGTAGGAGCTGTTTGAGTAAAGGATCTTTCGAAGGTTTGT | ||
| celegans | ---------------------------------TCGCCTAACCGTTGTCATGTAATATTTCCCAGAGAAAATGA-TATTACATGTTTCGGGTAGGAGC------------------------------- | ||
| cbrenneri | ----------------TCTCGCAAAGTACGAGAGCACCTGGCCGAAATCATGTAATA--TAACAATGAGTTC---TATTACATGTTCCGGGTAGGAGCTGTCG-------------------------- | ||
| ppacificus | -------------CGATTTTGAACATTAAAAGAACA--TGCATAACAAAAAATGAAAGTTATGA--GAACACGAATAATACATGT-TGATGTGGATGTTCT---------------------------- | ||
| * * * * * * * * ** ******* ** * * | |||
| ----- --------------------------------------- ------------------------------------------------------ ----- | NM_001111130 | ||
| ----- --------------------------------------- ------------------------------------------------------ ----- | NM_001106790 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001128722 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_069625 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_069625 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_069822 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_069822 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_171311 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_171311 | ||
| ----- --------------------------------------- ------------------------------------------------------ ----- | NM_025685 | ||
| ----- --------------------------------------- ------------------------------------------------------ ----- | NM_001011629 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_135592 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_204577 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001046246 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_113174 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_171312 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_171312 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_013720 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_171903 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_171903 | ||
| ----- --------------------------------------- ------------------------------------------------------ ----- | NM_001063194 | ||
| cbriggsae | ((((((.....((((((.((((.((((((.((((((((( ((((.......))))).)))))))))))))).)))).))))))...)))).)). | 1.000 -35.80 | |
| cremanei | ((((((.(((......((((........(((((((.((((.(((((..((((((((( (((.........))) ))))))))).))))).)))).))))))).......)))).....))).)))))) | 0.931 -48.16 | |
| celegans | ...((((.(((....(((((((((((.............)) )))))))))...))).))))... | 1.000 -19.82 | |
| cbrenneri | ............(((.(((.((((.(((.((.((((((((( .(((.....))). ))))))))))).))).)))).))).))) | 0.959 -31.50 | |
| ppacificus | .................(((((( (.((((.(((...(((...(((((.. ........))))).))).) )).)))).))))))) | 0.849 -15.50 |
| cbriggsae | chromosome:chrIV:5799923:5800015:-1 | Opposite_strand|Intronic_coding|NM_001111130|CCNRC01 ## Same_strand|Intronic_non-coding|NM_001128722|LOC565233 ## Same_strand|Intronic_coding|NM_069625|ZK596.1 ## Opposite_strand|Intronic_non-coding|NM_025685|Col27a1 ## {Repeats: no} ## {MIR: cbr-mir-246} |
| cremanei | chromosome:chrUn:78899315:78899440:-1 | intergenic |
| celegans | chromosome:chrIV:10940087:10940219:1 | intergenic ## {MIR: cel-mir-246} |
| cbrenneri | chromosome:chrUn:102791838:102791919:-1 | intergenic |
| ppacificus | chromosome:chrUn:141689467:141689549:-1 | Opposite_strand|Intronic_coding|NM_002019 |
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