miR-Intess: cbr-mir-248

cbr-mir-248

Cloning frequencies
absolute	AF16
cbr-mir-248 3arm	1
normalized	AF16
cbr-mir-248 3arm	0.003

block4850 (miRBase cbr-mir-248) [miRNAknown_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-248	0.007	no	no	0.52/0.57	23/23/1.00	0.0	0.0	1	0	1	0	21	5	3arm	1	nd	0.26	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------UACACGU----------------------------------------------------------	1	novel
seed	---------------------------------------------------------------------------------ACACGUG---------------------------------------------------------	0	miR-248
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------------------GTACACGTGCTCGGATAACGCTC-------------------------------------------	23	1
cbr-miR-248	--------------------------------------------------------------------------------TACACGTGCTCGGATAACGCTCA------------------------------------------	23	-
cbriggsae	-----TGCAAACTGATAT---------------TCACGATAAGCGCTATCCTTCCGTTGTATTCAAGCTTGGTTGTCGAGTACACGTGCTCGGATAACGCTCATCGAGTCTGATCGGTTATGTT---------------------
cremanei	------ATTTGCTAGTAT--TTTTTGGCAGAGATTACGATTAGCGATATCCAGCCGTTGTATTCAATAGCGCA-TTTGAGTACACGTGCACGGATA-CGCTCATCGTTTTTGTATTGCCACTTCGA---TTGAGTAAGT------
celegans	----------------------------------------AAGCGGTATCCAGCCGATGTTTTCAATACTGCA-TTTGAATACACGTGCACGGATAACGCTC-------------------------------------------
cbrenneri	TATTATAACTTCTGGTATTTTTCTTGGCAGTTATCACGATCAGCGCTATCCAGCCGTTGTAATCAAGAACGGAGGTTGACTACACGTGCACGGATAACGCTCATTGTCATAG-GTTGCCATTTTTAAAGTTAAGAAGATATGATA
cjaponica	--------------------------GCTTCCATTACGATTAGCGCTATCCAGCCGAAGTATTCTAGAAAAGA-TTCGAGTACACGTGCACGGATAGTGCTCATTGTTTTTG-----------------GAGAGCACGAAATTCA
	** * * * * ***** ** **
	+++++ +++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_001087279
	----- ------------- ------------------------------------------------------------------------------------------- -----	NM_001046332
cbriggsae	.((((((((((.. .(.((((.((((.(((((..((((.((((((..((......)).))))))))).)...))))).)))).)))).)....))))))).))).	1.000 -32.70
cremanei	(((((((..... ....((((((.((..(((((.((((.(((((.((((.(((((((((....... .))))))))))).))..))))) )))).)))))..))...))))))...... ...)))))))	0.999 -44.37
celegans	.((((.(((((.((((.(((.(((((....... .))))).))))).))..))))).)))).	0.997 -20.90
cbrenneri	(((((((.(((((...(((((...(((((..(((.(((((.((((.(((((.((((.((((.((((.........)))).)))))).))..))))).)))).))))).))). ..))))).....)))))..))))).)))))))	0.996 -43.30
cjaponica	(((((((..(((((.((((((((((.((((..((((((..(((.... ))))))))).)).))..)))))))))).)))))...)) )).)))..........	0.944 -37.60

cbriggsae	chromosome:chrX:4610294:4610397:1	Same_strand\|Intronic_non-coding\|NM_001087279\|fbxl5 ## Opposite_strand\|Intronic_non-coding\|NM_001046332\|CDC42 ## {Repeats: no} ## {MIR: cbr-mir-248}
cremanei	chromosome:chrUn:103926403:103926528:1	intergenic
celegans	chromosome:chrX:2262341:2262484:-1	intergenic ## {MIR: cel-mir-248}
cbrenneri	chromosome:chrUn:1122527:1122670:1	Opposite_strand\|Intronic_coding\|NM_001107657
cjaponica	chromosome:chrUn:6737767:6737867:-1	intergenic

miR-Intess™

cbr-mir-248

block4850 (miRBase cbr-mir-248) [miRNAknown_randfoldOK]