miR-Intess: cbr-mir-249

cbr-mir-249

Cloning frequencies
absolute	AF16
cbr-mir-249 3arm	2
normalized	AF16
cbr-mir-249 3arm	0.005

block4471 (miRBase cbr-mir-249) [miRNAknown_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-249	0.001	no	no	0.41/0.41	22/22/1.00	0.0	0.0	2	0	1	0	13	4	3arm	1	nd	0.00	0	2	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------------------------------CACAGGA------------------------------------------------	2	miR-249
		len	cloning frequencies
			AF16
cbr-miR-249	----------------------------------------------------------------------------------TCACAGGATTTTTGAGTGT--TGC--------------------------------	22	2
cbriggsae	ATTTGTTATTTTGTGCGCCCTCAATGCTACTAGCAACGCTCAAAAAT-CACTGTACGACAAATGAC-TATAT------TTTGTCACAGGATTTTTGAGTGT--TGCTAGTCGGAGAAGG-------------------
cremanei	--------------------------------GCAACGCACAAAAGT-TTCTGTGCGACAAATAT--GAAAT------TTTGTCACAGGACTTTTGAGCGT--TGC--------------------------------
celegans	----TTGTGTATCTATACTCTTGA-ACGACTAGCAACGCACAAACGTCTTCTGTGCGACAACATCT-GAATG------TTTGTCACAGGACTTTTGAGCGT--TGCCAGTCGAAAGAGGAATTTTTTTATACAA----
cbrenneri	ACTTTTATTTTTTTGT-CTCTCTGAGCTACTAGCAACGC-TAGAAGTCTACTGTTAGACAGAGTACAGAAAT------TTTGTCACAGGACTTTTGAGCGT--TGCTGGTTAATGAGAGCCTATTTTAGTAATTAGT-
cjaponica	--TTTTAAATTGTTTTCCTCTCCCTGT--CTAGCGGCGC-CAAAAGATTACTGTGAGGCAAA-----GAAATGGTGAGCTTGTCACAGGACTTTTGAGCGT--TGCTAGTTATAGAGGATGGAATTGTAAGTTTTTGA
ppacificus	---------AGCACATACCCTGACTGTGATTAGCAATGC-CACATTT-------------------------------GCTATCACAGGAC---GGAGTGGAATGCC-------------------------------
	* * * ****** * * ***
	---------------------------------------------------- ------------------ ----- ----------------------- ---------------- -----	NM_178660
	++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++ +++++ +++++++++++++++++++++++ ++++++++++++++++ +++++	NM_133381
	++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++ +++++ +++++++++++++++++++++++ ++++++++++++++++ +++++	NM_002254
	++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++ +++++ +++++++++++++++++++++++ ++++++++++++++++ +++++	NM_001059519
	++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++ +++++ +++++++++++++++++++++++ ++++++++++++++++ +++++	NM_024598
	++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++ +++++ +++++++++++++++++++++++ ++++++++++++++++ +++++	NM_175804
	++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++ +++++ +++++++++++++++++++++++ ++++++++++++++++ +++++	NM_001089427
	++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++ +++++ +++++++++++++++++++++++ ++++++++++++++++ +++++	NM_001110788
cbriggsae	..................(((...(.(.((((((((((((((((((( (.((((..((((((.... ..... ))))))))))))))))))))))) ))))))).).)..)))	1.000 -42.70
cremanei	(((((((.((((((. ((((((..((((((... ..... )))))))))))))))))).)))) )))	1.000 -29.20
celegans	.((((((......(((((.. .(((((.(((((((.((((.(((..((((((((..((((.. ..))) )))).)))))))).)))).)))) ))).))))).))))).........)))))).	0.994 -43.96
cbrenneri	(((.(((((....... (((((......((((((((((( ((((((((..((((..((((((((......)) ))))))))))))))))).))))) )))))))....)))))........)))))..)))	0.977 -44.96
cjaponica	....(((((...((((..((((((( (((((((((( ((((((....(((((((((... ..........)))..))))))..)))))).)))) ))))))..)))).))).)))).....)))))....	0.993 -42.12
ppacificus	.(((..(((.(((.((((((.((((((... .....)) ))))))))))..) )).)))...))).	1.000 -22.80

cbriggsae	chromosome:chrX:7892502:7892610:-1	Opposite_strand\|Intronic_non-coding\|NM_178660\|Rbms3 ## Same_strand\|Intronic_non-coding\|NM_133381\|Crebbp ## Same_strand\|Intronic_coding\|NM_002254\|KIF3C ## {Repeats: no} ## {MIR: cbr-mir-249}
cremanei	chromosome:chrUn:4287040:4287188:1	intergenic
celegans	chromosome:chrX:3006419:3006538:-1	intergenic ## {Repeats: AT_rich 1 28 -1 class=Low_complexity} ## {MIR: cel-mir-249}
cbrenneri	chromosome:chrUn:1355933:1356059:-1	intergenic
cjaponica	chromosome:chrUn:20281422:20281547:1	intergenic
ppacificus	chromosome:chrUn:26943373:26943521:1	Opposite_strand\|Intronic_coding\|NM_136618

miR-Intess™

cbr-mir-249

block4471 (miRBase cbr-mir-249) [miRNAknown_randfoldOK]