logoC.briggsae small RNAs


miR expression

cbr-mir-251

cbr-mir-251

Cloning frequencies
absoluteAF16
cbr-mir-251 5arm4
normalizedAF16
cbr-mir-251 5arm0.010
cbr-mir-251 relative cloning frequencies

block4433 (miRBase cbr-mir-251) [miRNAknown_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
miRBase cbr-mir-2510.001nono0.42/0.4821/24/1.000.0
1.0
4
0
1
0
16
1
5arm
1
nd
0.08
1
41nana
block4433 hairpin
  readsmiRBase family seed
seed     -------------------------UAAGUAG--------------------------------------------------------------------------------     4miR-251
  lencloning frequencies
   AF16
      ------------------------TTAAGTAGTGGTGCCGCTCTT-------------------------------------------------------------------     212
      ------------------------TTAAGTAGTGGTGCCGCTCTTAT-----------------------------------------------------------------     232
cbr-miR-251     ------------------------TTAAGTAGTGGTGCCGCTCTTATT----------------------------------------------------------------     24-
cbriggsae     -------CCCAAA-TGACATCTCGTTAAGTAGTGGTGCCGCTCTTATTAGAA--TTATCAAGTAATAAGAGTTGTTCGCTACTTAACGAGAGGAAATTTGGA----------      
cremanei     TTCTCGTTCCAAA-TAACCCCTTGTTAAGTAGTGGTGCCGCTCTTATTAG-A--ATCCAGAATAATAAGAGTCGCTCACTGCTTATCAAGGTGAAATTTGGGTTTTTGTGAG      
celegans     ATTCAACTTTCAA-TGACCCCTTGTTAAGTAGTGGTGCCGCTCTTATTAG-G--TTGAAAAGTAATAAGAGTAGTTCACTACTTATCAAGGTGAAA----------------      
cbrenneri     ------------------------TTAAGTAGTGGTGCCGCTCTTATTAG-A--TGAGATAGTAATAAGAGTTGCTCACTACTTAT--------------------------      
cjaponica     TTCAAATTTCAAATTTGTACCTTGTTAAGTAGTGGTGCCGTTCTTATTAA-ATCTCAAAAAGTAATAAGAGCTGTTCATTACTTATCAAGGTAAAGTTTGACCTTTGAG---      
ppacificus     ------------------------ATAAGTAGTGAT-----CTTTTTTAG----CTGAATATCATTA-------TTTTCTAGCTAA------GAAGTTTTGGTATTTCT---      
                               ********* *       ** ***           *  * **        *   *   **                                 
 -----       ------ --------------------------------------  ------------------------------------------------          -----NM_172925
 +++++       ++++++ ++++++++++++++++++++++++++++++++++++++  ++++++++++++++++++++++++++++++++++++++++++++++++          +++++NM_007496
 +++++       ++++++ ++++++++++++++++++++++++++++++++++++++  ++++++++++++++++++++++++++++++++++++++++++++++++          +++++NM_001110231
 +++++       ++++++ ++++++++++++++++++++++++++++++++++++++  ++++++++++++++++++++++++++++++++++++++++++++++++          +++++NM_004119
 +++++       ++++++ ++++++++++++++++++++++++++++++++++++++  ++++++++++++++++++++++++++++++++++++++++++++++++          +++++NM_001110232
 -----       ------ --------------------------------------  ------------------------------------------------          -----NM_007736
 +++++       ++++++ ++++++++++++++++++++++++++++++++++++++  ++++++++++++++++++++++++++++++++++++++++++++++++          +++++NM_001110229
 +++++       ++++++ ++++++++++++++++++++++++++++++++++++++  ++++++++++++++++++++++++++++++++++++++++++++++++          +++++NM_011058
 +++++       ++++++ ++++++++++++++++++++++++++++++++++++++  ++++++++++++++++++++++++++++++++++++++++++++++++          +++++NM_006206
 +++++       ++++++ ++++++++++++++++++++++++++++++++++++++  ++++++++++++++++++++++++++++++++++++++++++++++++          +++++NM_010160
 +++++       ++++++ ++++++++++++++++++++++++++++++++++++++  ++++++++++++++++++++++++++++++++++++++++++++++++          +++++NM_001110228
 +++++       ++++++ ++++++++++++++++++++++++++++++++++++++  ++++++++++++++++++++++++++++++++++++++++++++++++          +++++NM_001110230
 +++++       ++++++ ++++++++++++++++++++++++++++++++++++++  ++++++++++++++++++++++++++++++++++++++++++++++++          +++++NM_001090075
 -----       ------ --------------------------------------  ------------------------------------------------          -----NM_001087789
 -----       ------ --------------------------------------  ------------------------------------------------          -----NM_001079250
 +++++       ++++++ ++++++++++++++++++++++++++++++++++++++  ++++++++++++++++++++++++++++++++++++++++++++++++          +++++NM_001020811
 +++++       ++++++ ++++++++++++++++++++++++++++++++++++++  ++++++++++++++++++++++++++++++++++++++++++++++++          +++++NM_001083316
 +++++       ++++++ ++++++++++++++++++++++++++++++++++++++  ++++++++++++++++++++++++++++++++++++++++++++++++          +++++NM_077435
cbriggsae            .((((( (....((((((((((((((((.((.((((((((((...  ........)))))))))).))))))))))))))))))....)))))).               1.000 -42.20
cremanei     .((.((.(((((( (....(((((.((((((((((.((.((((((((((. .  ........)))))))))).)))))))))))).)))))....)))))))....)).)).     0.998 -41.00
celegans     .......(((((. .....(((((.((((((((((.((..(((((((((. .  ((....)))))))))))..)))))))))))).))))))))))                     0.869 -31.40
cbrenneri                             .((((((((((.((.((((((((((. .  ........)))))))))).)))))))))))).                               1.000 -24.90
cjaponica     .(((((..((((((((.(((((((.((((((((((.((.((((((((((. ...........)))))))))).)))))))))))).)))))))))))))))..))))).        1.000 -40.70
ppacificus                             ..(((((.(((.     .((((((((    (((((........       ..))).))))))      ))))..))).)))))..        0.997 -13.40

cbriggsaechromosome:chrX:5851573:5851664:-1Opposite_strand|Intronic_non-coding|NM_172925|Klhl31 ## Same_strand|Intronic_non-coding|NM_007496|Zfhx3 ## Same_strand|Intronic_coding|NM_004119|FLT3 ## Opposite_strand|Intronic_coding|NM_007736|Col4a5 ## {Repeats: no} ## {MIR: cbr-mir-251}
cremaneichromosome:chrUn:33059029:33059136:1Same_strand|Intronic_coding|NM_074370
celeganschromosome:chrX:11004649:11004740:1intergenic ## {MIR: cel-mir-251}
cbrennerichromosome:chrUn:20061416:20061547:-1Same_strand|Intronic_coding|NM_001104373
cjaponicachromosome:chrUn:181820:181927:1Same_strand|Intronic_coding|NM_001044093
ppacificuschromosome:chrUn:47451400:47451531:-1Opposite_strand|Intronic_coding|NM_001003336


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