seed | -------------------------UAAGUAG-------------------------------------------------------------------------------- | 4 | miR-251 |
| | | AF16 |
| ------------------------TTAAGTAGTGGTGCCGCTCTT------------------------------------------------------------------- | 21 | 2 |
| ------------------------TTAAGTAGTGGTGCCGCTCTTAT----------------------------------------------------------------- | 23 | 2 |
cbr-miR-251 | ------------------------TTAAGTAGTGGTGCCGCTCTTATT---------------------------------------------------------------- | 24 | - |
cbriggsae | -------CCCAAA-TGACATCTCGTTAAGTAGTGGTGCCGCTCTTATTAGAA--TTATCAAGTAATAAGAGTTGTTCGCTACTTAACGAGAGGAAATTTGGA---------- | |
cremanei | TTCTCGTTCCAAA-TAACCCCTTGTTAAGTAGTGGTGCCGCTCTTATTAG-A--ATCCAGAATAATAAGAGTCGCTCACTGCTTATCAAGGTGAAATTTGGGTTTTTGTGAG | |
celegans | ATTCAACTTTCAA-TGACCCCTTGTTAAGTAGTGGTGCCGCTCTTATTAG-G--TTGAAAAGTAATAAGAGTAGTTCACTACTTATCAAGGTGAAA---------------- | |
cbrenneri | ------------------------TTAAGTAGTGGTGCCGCTCTTATTAG-A--TGAGATAGTAATAAGAGTTGCTCACTACTTAT-------------------------- | |
cjaponica | TTCAAATTTCAAATTTGTACCTTGTTAAGTAGTGGTGCCGTTCTTATTAA-ATCTCAAAAAGTAATAAGAGCTGTTCATTACTTATCAAGGTAAAGTTTGACCTTTGAG--- | |
ppacificus | ------------------------ATAAGTAGTGAT-----CTTTTTTAG----CTGAATATCATTA-------TTTTCTAGCTAA------GAAGTTTTGGTATTTCT--- | |
| ********* * ** *** * * ** * * ** | |
| ----- ------ -------------------------------------- ------------------------------------------------ ----- | NM_172925 |
| +++++ ++++++ ++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_007496 |
| +++++ ++++++ ++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001110231 |
| +++++ ++++++ ++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_004119 |
| +++++ ++++++ ++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001110232 |
| ----- ------ -------------------------------------- ------------------------------------------------ ----- | NM_007736 |
| +++++ ++++++ ++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001110229 |
| +++++ ++++++ ++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_011058 |
| +++++ ++++++ ++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_006206 |
| +++++ ++++++ ++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_010160 |
| +++++ ++++++ ++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001110228 |
| +++++ ++++++ ++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001110230 |
| +++++ ++++++ ++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001090075 |
| ----- ------ -------------------------------------- ------------------------------------------------ ----- | NM_001087789 |
| ----- ------ -------------------------------------- ------------------------------------------------ ----- | NM_001079250 |
| +++++ ++++++ ++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001020811 |
| +++++ ++++++ ++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001083316 |
| +++++ ++++++ ++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_077435 |
cbriggsae | .((((( (....((((((((((((((((.((.((((((((((... ........)))))))))).))))))))))))))))))....)))))). | 1.000 -42.20 |
cremanei | .((.((.(((((( (....(((((.((((((((((.((.((((((((((. . ........)))))))))).)))))))))))).)))))....)))))))....)).)). | 0.998 -41.00 |
celegans | .......(((((. .....(((((.((((((((((.((..(((((((((. . ((....)))))))))))..)))))))))))).)))))))))) | 0.869 -31.40 |
cbrenneri | .((((((((((.((.((((((((((. . ........)))))))))).)))))))))))). | 1.000 -24.90 |
cjaponica | .(((((..((((((((.(((((((.((((((((((.((.((((((((((. ...........)))))))))).)))))))))))).)))))))))))))))..))))). | 1.000 -40.70 |
ppacificus | ..(((((.(((. .(((((((( (((((........ ..))).)))))) ))))..))).))))).. | 0.997 -13.40 |
cbriggsae | chromosome:chrX:5851573:5851664:-1 | Opposite_strand|Intronic_non-coding|NM_172925|Klhl31 ## Same_strand|Intronic_non-coding|NM_007496|Zfhx3 ## Same_strand|Intronic_coding|NM_004119|FLT3 ## Opposite_strand|Intronic_coding|NM_007736|Col4a5 ## {Repeats: no} ## {MIR: cbr-mir-251} |
cremanei | chromosome:chrUn:33059029:33059136:1 | Same_strand|Intronic_coding|NM_074370 |
celegans | chromosome:chrX:11004649:11004740:1 | intergenic ## {MIR: cel-mir-251} |
cbrenneri | chromosome:chrUn:20061416:20061547:-1 | Same_strand|Intronic_coding|NM_001104373 |
cjaponica | chromosome:chrUn:181820:181927:1 | Same_strand|Intronic_coding|NM_001044093 |
ppacificus | chromosome:chrUn:47451400:47451531:-1 | Opposite_strand|Intronic_coding|NM_001003336 |