miR-Intess: cbr-mir-252

cbr-mir-252

Cloning frequencies
absolute	AF16
cbr-mir-252 5arm	73
normalized	AF16
cbr-mir-252 5arm	0.190

block706 (miRBase cbr-mir-252) [miRNAknown_cloningHIGH_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-252	0.002	no	no	0.44/0.48	18/23/0.93	0.0	0.0	68	0	1	0	14	8	5arm	1	nd	0.24	3	73	1	na	na

		reads	miRBase family seed
seed	----------------------------------UAAGUAG----------------------------------------------------------------------------------------------	73	miR-251
seed	-----------------------------------AAGUAGU---------------------------------------------------------------------------------------------	0	miR-252
		len	cloning frequencies
			AF16
	---------------------------------ATAAGTAGTAGTGCCGCAGGT---------------------------------------------------------------------------------	21	68
	---------------------------------ATAAGTAGTAGTGCCGCA------------------------------------------------------------------------------------	18	5
cbr-miR-252	----------------------------------TAAGTAGTAGTGCCGCAGGTAAC------------------------------------------------------------------------------	23	-
cbriggsae	-------------------GGTCTCTCCCAGTTATAAGTAGTAGTGCCGCAGGTAACCGCTTCCAGAAAATTGGTTTACCTACTGCCTTCTGCTTAGAA--TTGGGATTTTGATGACCG----------------
cremanei	----------TATTCTTGAGGTCTCTTTCAGTTATAAGTAGTAGTGCCGCAGGTAACCACTCAAATATA--TGGTTTACCTACTGCCTTCTGCTTAGAA--TTGAAATATCGATGACC-----------------
celegans	---------------CAGGGGTCTCTTTCAGTTATAAGTAGTAGTGCCGCAGGTAACCGCCAGTCTAAA--AGGCTTACCTACTGCCTTCTGCTTAAAA--TTGAAATATTGATGACCATTG-------------
cbrenneri	CTTTCTATATTCCTTTTTTGGTCTCTTTCAGTTATAAGTAGTAGTGCCGCAGGTAACCG---ATTTCAA--TGGTTTACCTACTGCCTCCTGCTTAGAA--TTGAAATTTCGATGACCGTCTTTTGTAATGAAAG
cjaponica	--------------------GTCTCTTCCGATTATAAGTAGTAGTGCCGCAGGTAACTG------GAGA--TTGATTACCTACTGCCTCCTGCTTAAAA--TTGGAA----------------------------
ppacificus	--------GATCACCTATCACTCTGTCCGGGTTCTAAGTAGTAGTGCCGCAGGTAACCAACAATTGAGA---GGTTTACCTATAGCCTTCTGCTTAACACCTTGAAGAGTTGATC--------------------
	*** * ********************* * * ***** ***** * ***
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++ +++++	NM_001031311
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++ +++++	NM_177732
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++ +++++	NM_020272
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++ +++++	NM_214509
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++ +++++	NM_207243
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++ +++++	NM_207243
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++ +++++	NM_207243
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++ +++++	NM_207243
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++ +++++	NM_207243
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++ +++++	NM_207243
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++ +++++	NM_207243
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++ +++++	NM_207243
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++ +++++	NM_207243
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++ +++++	NM_207243
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++ +++++	NM_207243
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++ +++++	NM_207243
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++ +++++	NM_207243
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++ +++++	NM_207243
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++ +++++	NM_207243
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++ +++++	NM_207243
	----- -------------------------------------------------------------------------------- ------------------ -----	NM_001129175
cbriggsae	((((((((((((((.(((((((.((.((...(((((((((.((......)).))))).))))...)))).))))))).)) ))))))....)).)))).	1.000 -36.50
cremanei	.........((((((((((((((.(((((((.((.((...(((((((((.......... ))))).))))...)))).))))))).)) ))))))....)).))))	0.995 -30.50
celegans	....((((((((((((((.(((((((.((.((...((((((..(((........ .)))))))))...)))).))))))).)) ))))))....)).))))....	0.999 -33.10
cbrenneri	(((((..(((........(((((((((((((((.(((((((.((.((...((((((((( ....... ))))).))))...)))).))))))).)) ))))))....)).)))))......)))..)))))	0.971 -34.24
cjaponica	.....((((((((.(((((((.((.((...((((((... .... ....))))))...)))).))))))).)) ))))))	0.999 -23.60
ppacificus	(((((......(((((.((.((((..(((((((.((.((...((((((((........... )))).))))...)))).)))))))..)))).))))))))))))	0.999 -32.30

cbriggsae	chromosome:chrII:7467789:7467886:-1	Same_strand\|Intronic_non-coding\|NM_001031311\|PIK3CB ## Same_strand\|Intronic_coding\|NM_020272\|Pik3cg ## Opposite_strand\|Intronic_coding\|NM_001129175\|W02B12.13 ## {Repeats: no} ## {MIR: cbr-mir-252}
cremanei	chromosome:chrUn:8843495:8843598:1	Opposite_strand\|Intronic_coding\|NM_001011005 ## Same_strand\|Intronic_coding\|NM_077846
celegans	chromosome:chrII:11446772:11446874:-1	Opposite_strand\|Intronic_coding\|W02B12.13 ## {MIR: cel-mir-252}
cbrenneri	chromosome:chrUn:41707048:41707175:1	Opposite_strand\|Intronic_coding\|NM_001056672 ## Opposite_strand\|Boundary_coding\|NM_001129175
cjaponica	chromosome:chrUn:63338611:63338687:-1	Opposite_strand\|Intronic_coding\|NM_001129175
ppacificus	chromosome:chrUn:24531069:24531172:1	Same_strand\|Intronic_coding\|NM_001114660 ## Opposite_strand\|Intronic_coding\|NM_174405

miR-Intess™

cbr-mir-252

block706 (miRBase cbr-mir-252) [miRNAknown_cloningHIGH_randfoldOK]