cbr-mir-253
| absolute | AF16 |
| cbr-mir-253 5arm | 3 |
| cbr-mir-253 3arm | 4 |
| normalized | AF16 |
| cbr-mir-253 5arm | 0.008 |
| cbr-mir-253 3arm | 0.010 |
sblock60 (miRBase cbr-mir-253) [miRNAknown_cloningOK_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-253 | 0.001 | no | no | 0.43/0.55 | 18/22/0.62 | 0.0 nd 0.0 | 1.0 nd 1.0 | 3 0 4 | 0 0 0 | 1 0 1 | 0 0 0 | 21 28 24 | 4 -3 6 | 5arm 5arm_loop 3arm | 1 1 1 | nd nd nd | 0.10 0.29 0.09 | 1 4 1 | 7 | 1 | 1 | 2 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------------------------------------------------------UAGUAGG------------------------------------------------------ | 4 | novel |
| seed | -------------------------------------------UUCUCAC------------------------------------------------------------------------------------------------------------ | 3 | novel |
| seed | --------------------------------------------------ACAC-CUC---------------------------------------------------------------------------------------------------- | 0 | miR-253 |
| len | cloning frequencies | ||
| AF16 | |||
| ------------------------------------------CTTCTCACACAC-CTCACT------------------------------------------------------------------------------------------------- | 18 | 2 | |
| ------------------------------------------------------------------------------------------------TTAGTAGGCGTTGTGGGAAGGG---------------------------------------- | 22 | 2 | |
| ------------------------------------------------------------------------------------------------TTAGTAGGCGTTGTGGGAAGG----------------------------------------- | 21 | 1 | |
| ------------------------------------------------------------------------------------------------TTAGTAGGCGTTGTGGGAA------------------------------------------- | 19 | 1 | |
| ------------------------------------------CTTCTCACACAC-CTCACTAAC---------------------------------------------------------------------------------------------- | 21 | 1 | |
| cbr-miR-253 | -------------------------------------------------CACAC-CTCACTAACAC----------TAACT----------------------------------------------------------------------------- | 21 | - |
| cbriggsae | ---------------------AACATTTTTCGAGTTTCAGTCCTTCTCACACAC-CTCACTAACAC----------TAACTACAGATTTCTAGATGTTAGTAGGCGTTGTGGGAAGGGCGGAGATGACGAATACTTTGTGCA---------------- | ||
| celegans | -------------ATTTATTTAGAATTGTTCCGATCGCCGCTCTTTTCACACAC-CTCACTAACAC----------TGACCACCGATGCATAGATGTTAGTAGGCGTTGTGGGAAGGGCGGCGACAGTGAACGTCGTTTCTC-------ATTATAAAT | ||
| cbrenneri | --TTTCCTATTTGCATCCTGAATACTCATTCGATGTTCCACCCTTTTCACACAC-CTGACTAACACAA---------AACCGCAGATGTATTGATGTTAGTAGGCGTTGTGGGAAGGGTGGCGATGATGAGCATATTTTCATGAAAAATCCTAGAAA- | ||
| cjaponica | GGTAATCGGATTGTTTTTTGTTGAATATTTCGAGTTGCAGCCATTCTCACACAC-CTCACTATCAC-----------AGACGCGATCGTCTAGATGTTAGTAGGCGTTGTGGGAAGGGCGGCGATGGCGAAAAGTTTG----GAAACATGTGATAACT | ||
| ppacificus | ---------------------TCCCTCTTTCG---------TCTTCTCACACACTCTAATTTCCATAATTGTTTATTAATTCCAGA---ATGGAAGATGCGGGATGTAGTGGGAAG------------------------------------------ | ||
| * *** ** ******** ** * * ** * * ** * * * ** ******** | |||
| +++++ +++++++++++++++++++++++++++++++++ +++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001011629 | ||
| +++++ +++++++++++++++++++++++++++++++++ +++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_214466 | ||
| +++++ +++++++++++++++++++++++++++++++++ +++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_071851 | ||
| +++++ +++++++++++++++++++++++++++++++++ +++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001003090 | ||
| ----- --------------------------------- ----------- ------------------------------------------------------------------ ----- | NM_062593 | ||
| +++++ +++++++++++++++++++++++++++++++++ +++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_152229 | ||
| +++++ +++++++++++++++++++++++++++++++++ +++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_070565 | ||
| +++++ +++++++++++++++++++++++++++++++++ +++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_214509 | ||
| ----- --------------------------------- ----------- ------------------------------------------------------------------ ----- | NM_005334 | ||
| +++++ +++++++++++++++++++++++++++++++++ +++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_070407 | ||
| +++++ +++++++++++++++++++++++++++++++++ +++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001031045 | ||
| +++++ +++++++++++++++++++++++++++++++++ +++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001122918 | ||
| +++++ +++++++++++++++++++++++++++++++++ +++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_072114 | ||
| +++++ +++++++++++++++++++++++++++++++++ +++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_182377 | ||
| cbriggsae | .(((...((((.(((((.(((((((((((((.( ((.(((((((( ((............))).)))))))))).).)))))))))))).)))))..)))).....)))... | 1.000 -41.50 | |
| celegans | ((((((..((((.(((((...(((((((((((..(((((.( ((.(((((((( ((..((....))..))).)))))))))).)).)))..)))))))))))....)))))....)))). ...)))))) | 0.998 -48.60 | |
| cbrenneri | .............((.((((..((((((....(((((((((((..(((((.( ((.(((((((((( .((.......)).))).)))))))))).)).)))..)))))))).)))))))))......)))).))............. | 0.921 -44.20 | |
| cjaponica | (((.((((.((.((((((....((((.(((((.(((((.(((.(((((((((.( ((.((((.((. (((((....)))))...)).))))))).)).))))))).))).)))))..))))).))))) ))))))).)))).))) | 0.997 -49.60 | |
| ppacificus | ........... .((((((((((((((((.((((((((((((.....)))))..... ))))))).)).))).))).)))))))) | 0.970 -20.40 |
| cbriggsae | chromosome:chrV:9138936:9139045:-1 | Same_strand|Intronic_non-coding|NM_001011629|Mblk-1 ## Same_strand|Intronic_coding|NM_214466|COLP3alpha ## Opposite_strand|Intronic_coding|NM_062593|ZK622.1 ## Opposite_strand|Intronic_non-coding|NM_005334|HCFC1 ## {Repeats: no} ## {MIR: cbr-mir-253} |
| celegans | chromosome:chrV:5780482:5780608:-1 | Same_strand|Intronic_coding|F44E7.5b ## {MIR: cel-mir-253} |
| cbrenneri | chromosome:chrUn:46020854:46020998:-1 | Same_strand|Intronic_coding|NM_072114 |
| cjaponica | chromosome:chrUn:55160314:55160455:1 | intergenic |
| ppacificus | chromosome:chrUn:132611440:132611522:1 | Same_strand|Intronic_coding|NM_001356 ## Opposite_strand|Intronic_coding|NM_001047975 |
©2008 InteRNA Genomics B.V.