cbr-mir-254
| absolute | AF16 |
| cbr-mir-254 5arm | 1 |
| normalized | AF16 |
| cbr-mir-254 5arm | 0.003 |
sblock78 (miRBase cbr-mir-254) [miRNAknown_multiarm_DicerOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-254 | 0.001 | no | no | 0.30/0.38 | 21/23/1.00 | 0.0 nd | 0.0 nd | 1 0 | 0 0 | 1 0 | 0 0 | 24 23 | 5 7 | 5arm 3arm | 1 1 | nd nd | 0.24 0.26 | 2 3 | 1 | 1 | 1 | 2 |
| reads | miRBase family seed | ||
| seed | ----------------------------------ACAGAAG--------------------------------------------------------------------------------------- | 1 | novel |
| seed | ----------------------------------------------------------------------------GCAAAUC--------------------------------------------- | 0 | miR-254 |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------------------------TACAGAAGCATCGATTTTCAC-------------------------------------------------------------------------- | 21 | 1 | |
| cbr-miR-254 | ---------------------------------------------------------------------------TGCAAATCTTTTGCAACTGTATA------------------------------ | 23 | - |
| cbriggsae | ---------CTCCACTCTATGCGGGTTGCCGTATACAGAAGCATCGATTTTCACACGCCA----TGATGCGCCTGTGCAAATCTTTTGCAACTGTATACGGCGATTTAGCAGACCATATTG------- | ||
| cremanei | -GCATGATGAGCACTAGAATGCATATCGCCGCTTACAGAAGCGTGGATTTTCACATACCAA-TCGGAAGTGTCTGTGCAAATCTATCGCAACTGTACACGGCGATACTGCAGTTATTGAACACCTTGC | ||
| celegans | --------------------------------CTACAGAAGCATAGATTTCCACAAACCA--TTCGAGGTGTTTGTGCAAATCTTTCGCGACTGTAG------------------------------- | ||
| cbrenneri | CGCATGATTCACTTAAAAATGCATATTGCCGCCTACAGAAGCATAGATTTTCACATACCGA-TCTGAAGAGTTTGTGCAAATCTGTCGCATCTGTAGGCGGCGATTATGCA----------------- | ||
| cjaponica | -------------------------TCTCCGCCTACAGAAGCATAGATTTCCACAAGTTAATTTTTAAGAGCCTGTGCAAATCTGTCGCATCTGTAAGCGGCGG------------------------ | ||
| ********* * ***** **** * * * *********** * ** ***** | |||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001105250 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_004796 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_138970 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001087279 | ||
| ----- --------------------------------------------------- --------------------------------------------------------- ----- | NM_072374 | ||
| ----- --------------------------------------------------- --------------------------------------------------------- ----- | NM_007496 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001080396 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001092981 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_077496 | ||
| +++++ +++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++ | NM_001109695 | ||
| cbriggsae | ..........(((((((((((((((((((..(((..(((((.((((.(((. ....).)).)))).)))))...)))..)))))))))))))))).))).......... | 1.000 -41.50 | |
| cremanei | (((...((..((.((...((((((((((((..(((((..((((((((((.((((.((... ........)).)))).))))))).)))..)))))..)))))))).))))..)).))..))...))) | 0.971 -43.30 | |
| celegans | ((((((..((..((((((.((((((((. .....)))..))))).))))))...))..)))))) | 1.000 -22.50 | |
| cbrenneri | ...................((((((((((((((((((((.((((((((((.((((.((... ((....)))).)))).)))))))).)).))))))))))))))).))))) | 0.955 -49.00 | |
| cjaponica | ((.((((.((((((.((((((((((.((((.(((..........))).)))).)))))))).)).)))))).)))).)) | 1.000 -30.90 |
| cbriggsae | chromosome:chrX:5320054:5320161:1 | Same_strand|Intronic_non-coding|NM_001105250|NRXN3 ## Opposite_strand|Intronic_coding|NM_072374|C33G8.2 ## Opposite_strand|Intronic_non-coding|NM_007496|Zfhx3 ## Same_strand|Intronic_coding|NM_001080396|FAM155A ## {Repeats: no} ## {MIR: cbr-mir-254} |
| cremanei | chromosome:chrUn:33393203:33393328:-1 | Same_strand|Intronic_coding|NM_001109695 |
| celegans | chromosome:chrX:11333435:11333582:-1 | Same_strand|Intronic_coding|ZK455.2 ## {MIR: cel-mir-254} |
| cbrenneri | chromosome:chrUn:96364:96473:-1 | Same_strand|Intronic_coding|NM_001109695 |
| cjaponica | chromosome:chrUn:593201:593279:-1 | Same_strand|Intronic_coding|NM_001109695 |
©2008 InteRNA Genomics B.V.