miR-Intess: cbr-mir-255

cbr-mir-255

Cloning frequencies
absolute	AF16
cbr-mir-255 3arm	1
normalized	AF16
cbr-mir-255 3arm	0.003

block4081 (miRBase cbr-mir-255) [miRNAknown_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-255	0.001	no	no	0.27/0.27	22/22/1.00	0.0	0.0	1	0	1	0	16	5	3arm	1	nd	0.09	1	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------------AACUGAA---------------------------------------------	1	miR-255
		len	cloning frequencies
			AF16
cbr-miR-255	------------------------------------------------------------------AAACTGAAGAGATTTTTTACAG-------------------------------	22	1
cbriggsae	--------GATGTCTCTTCATTATCAGGTAAGAAATCTTTGTAGTTTTCCGCGAGTCAAC--GTGAAAACTGAAGAGATTTTTTACAGATTCCGGAGGAGCATC---------------
cremanei	-------------------------AGGTAAGAAATCTTTGTGGTTTTCCGTGTTTAAAC--GCGAAAACTGAAGAGATTTTTTACAG-------------------------------
celegans	CTTCAGTGGTTCGACTAAATTTTGGAGGTAAGAAATCTTTGTAGTTCTCCGTATTGTGAC--GTGAAAACTGAAGAGATTTTTTACAGACTTCACAAATTTGAAATATATTCCTGCAAG
cbrenneri	-------------------------AGGTAAGAAATCTTTGTGGTTTTCCGTTATGAGAC--GAGAAAACTGAAGAGATTTTTTACAG-------------------------------
cjaponica	----------------------CTCACGCA--AATCCTGGACAGTTTACGGAGATTGAACCGGCGAAAACTGAATGTTTGTATTGAA--------------------------------
	* * * *** * * ** * ********** * * ** *
	----- ---------------------------------------------------- ------------------------------------------ -----	NM_001011629
	----- ---------------------------------------------------- ------------------------------------------ -----	NM_214466
	----- ---------------------------------------------------- ------------------------------------------ -----	NM_071851
	----- ---------------------------------------------------- ------------------------------------------ -----	NM_001003090
	----- ---------------------------------------------------- ------------------------------------------ -----	NM_152229
	----- ---------------------------------------------------- ------------------------------------------ -----	NM_131402
	----- ---------------------------------------------------- ------------------------------------------ -----	NM_070565
	----- ---------------------------------------------------- ------------------------------------------ -----	NM_214509
	----- ---------------------------------------------------- ------------------------------------------ -----	NM_070407
	----- ---------------------------------------------------- ------------------------------------------ -----	NM_001031045
	----- ---------------------------------------------------- ------------------------------------------ -----	NM_001122918
cbriggsae	((((.((((((...(((..(((((((((((((.((((((((.(((......) )))))))))).))))))))))))).)))....))))))))))	1.000 -37.60
cremanei	..(((((((((((((.(((((((((((......)) ).)))))))).)))))))))))))..	1.000 -24.80
celegans	((((((..((.....(((((((((((((((((((((((((.(((((.(((((......)) ).)).))))).)))))))))))))...))))).)))))))......))..))).)))	0.994 -31.00
cbrenneri	..(((((((((((((.((((((((((((....))) ).)))))))).)))))))))))))..	1.000 -25.00
cjaponica	.(((.((( (((......((((((.(((........)))....))))))...))))))..))).	0.875 -10.90

cbriggsae	chromosome:chrV:8908222:8908315:1	Opposite_strand\|Intronic_non-coding\|NM_001011629\|Mblk-1 ## Opposite_strand\|Intronic_coding\|NM_214466\|COLP3alpha ## {Repeats: no} ## {MIR: cbr-mir-255}
cremanei	chromosome:chrUn:141254727:141254860:1	Opposite_strand\|Intronic_coding\|NM_072673
celegans	chromosome:chrV:5440620:5440736:1	intergenic ## {MIR: cel-mir-255}
cbrenneri	chromosome:chrUn:186086573:186086706:1	intergenic
cjaponica	chromosome:chrUn:104537766:104537899:-1	Same_strand\|Intronic_coding\|NM_066158

miR-Intess™

cbr-mir-255

block4081 (miRBase cbr-mir-255) [miRNAknown_randfoldOK]