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cbr-mir-259

cbr-mir-259

Cloning frequencies
absoluteAF16
cbr-mir-259 5arm1
normalizedAF16
cbr-mir-259 5arm0.003
cbr-mir-259 relative cloning frequencies

block4075 (miRBase cbr-mir-259) [miRNAknown_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
miRBase cbr-mir-2590.002nono0.33/0.3921/23/1.000.0
2.0
1
0
1
0
16
1
5arm
1
nd
0.22
2
11nana
block4075 hairpin
  readsmiRBase family seed
seed     -----------------------------------AAUCUCA-------------------------------------------------------------------------------------------------     1miR-259
  lencloning frequencies
   AF16
      ----------------------------------AAATCTCATCCTAATCTGGTTG---C-------------------------------------------------------------------------------     231
cbr-miR-259     ----------------------------------AAATCTCATCCTAATCTGGTT------------------------------------------------------------------------------------     21-
cbriggsae     ------------------AGTCATCGAAACGAGTAAATCTCATCCTAATCTGGTTG---CATTTTCAATACTT--TTTGCTACCGATTTGGT-TTGGGATTGGCT--TGTCTAGTATTGAC------------------      
cremanei     ----------------------------------AAATCTCATCCTAATCTGGTTGACACAACACAAGGA-----AGTGCTACCGATTTGGC-TTGGGATTG-------------------------------------      
celegans     -----GTAAGTTCGGTTCAGTCATTGAAACGAGTAAATCTCATCCTAATCTGGTAG---CATCTTTCGAAC----CTTGCCACCGATTTGGC-ATGGGATTGACT--TGTTAAATAGTGACTTTTTTCTTGC-------      
cbrenneri     TCAAAAAAGGTAAGTGATTGTCAGTGAAACGAGTTAATCTCATCCTAATCTGGTCG---CATCACAAAACTTA--CCTGCTACCGATTTGGC-TTGGGATTGACT--CGTTGAATTTTGACTATTGTCCTAGTTTTCGA      
cjaponica     ----GGTAAGCTCTGTTTTGTCAGCAATACGAGTAAATCTCATCCTAATCTGGTCGCAAAATTATCAAAATGGACAATGCTACCGGTTCGGCTTTGGGATTGACTCGTGTTTAGAACTGACACTTTCTTCC--------      
                                         ******************* *    *                *** **** ** **   ********                                           
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_080814
 +++++                  ++++++++++++++++++++++++++++++++++++++   ++++++++++++++  +++++++++++++++++ ++++++++++++  ++++++++++++++                  +++++NM_070877
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_007732
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_080804
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_080630
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_001003090
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_008331
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_001100911
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_032518
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_080801
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_009930
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_026030
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_080798
 +++++                  ++++++++++++++++++++++++++++++++++++++   ++++++++++++++  +++++++++++++++++ ++++++++++++  ++++++++++++++                  +++++NM_072417
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_201478
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_007732
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_067556
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_080803
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_080629
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_080630
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_080810
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_080680
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_212528
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_080679
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_053304
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_007742
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_001076831
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_001076831
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_030582
 +++++                  ++++++++++++++++++++++++++++++++++++++   ++++++++++++++  +++++++++++++++++ ++++++++++++  ++++++++++++++                  +++++NM_001100591
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_199214
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_131292
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_053304
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_080809
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_080807
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_199214
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_152888
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_080808
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_001003090
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_005203
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_080802
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_080811
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_000090
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_080806
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_000090
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_007729
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_001087789
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_203889
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_001087352
 +++++                  ++++++++++++++++++++++++++++++++++++++   ++++++++++++++  +++++++++++++++++ ++++++++++++  ++++++++++++++                  +++++NM_204577
 +++++                  ++++++++++++++++++++++++++++++++++++++   ++++++++++++++  +++++++++++++++++ ++++++++++++  ++++++++++++++                  +++++NM_001038742
 +++++                  ++++++++++++++++++++++++++++++++++++++   ++++++++++++++  +++++++++++++++++ ++++++++++++  ++++++++++++++                  +++++NM_080338
 +++++                  ++++++++++++++++++++++++++++++++++++++   ++++++++++++++  +++++++++++++++++ ++++++++++++  ++++++++++++++                  +++++NM_167026
 +++++                  ++++++++++++++++++++++++++++++++++++++   ++++++++++++++  +++++++++++++++++ ++++++++++++  ++++++++++++++                  +++++NM_167027
 +++++                  ++++++++++++++++++++++++++++++++++++++   ++++++++++++++  +++++++++++++++++ ++++++++++++  ++++++++++++++                  +++++NM_064380
 +++++                  ++++++++++++++++++++++++++++++++++++++   ++++++++++++++  +++++++++++++++++ ++++++++++++  ++++++++++++++                  +++++NM_141224
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_032085
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_205305
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_001087258
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_001090075
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_001105289
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_001034039
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_001105289
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_001090075
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_001046199
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_001087352
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_001011005
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_214509
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_001033832
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_001034039
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_131292
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_174634
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_009932
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_080595
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_130445
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_080800
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_007737
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_198721
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_000393
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_000393
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_001854
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_001854
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_080629
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_001080091
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_001122918
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_001122918
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_000493
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_001029897
 -----                  --------------------------------------   --------------  ----------------- ------------  --------------                  -----NM_001130103
cbriggsae                       .((((.(...((((((.(((((((..((((..((((.(   ((............  ..))).))))..)))). .))))))).)))  )))...)...))))                       1.000 -29.44
cremanei                                       .(((((((..((((..((((...(((..........     .)))..))))..)))). .))))))).                                          0.987 -16.10
celegans          (((((........((((((((.(((((((.((((((((((.((((.(((.(   ((..........    ..))).))))))).)). )))))))).)))  ))))...)))))))).....)))))            1.000 -37.62
cbrenneri     .......(((....((((.(((((...(((((((((((((((..((((..((((.(   ((............  ..))).))))..)))). .)))))))))))  )))).....))))).)))).))).........     0.995 -39.04
cjaponica         ..............((((((.(((((((((.(((((((.((.((.(((((.(((...((.((......)).))))).))))))).))...))))))).))))))))).....)))))).........             0.879 -35.00

cbriggsaechromosome:chrV:7917242:7917336:1Opposite_strand|Intronic_coding|NM_080814|COL13A1 ## Same_strand|Intronic_coding|NM_070877|ugt-42 ## Opposite_strand|Intronic_non-coding|NM_008331|Ifit1 ## Same_strand|Intronic_non-coding|NM_001100591|Rc3h2 ## {Repeats: no} ## {MIR: cbr-mir-259}
cremaneichromosome:chrUn:57576530:57576664:-1Opposite_strand|Intronic_coding|NM_001114256 ## Same_strand|Intronic_coding|NM_067581
celeganschromosome:chrV:10538991:10539107:-1intergenic ## {MIR: cel-mir-259}
cbrennerichromosome:chrUn:67725526:67725656:1intergenic
cjaponicachromosome:chrUn:47919156:47919282:-1Same_strand|Intronic_coding|NM_021343


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