miR-Intess: cbr-mir-268

cbr-mir-268

block3745 (miRBase cbr-mir-268) [miRNAknown_lenNOK_randfoldOK_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-268	0.001	no	no	0.40/0.40	25/25/0.00	nd	nd	0	0	0	0	6	5	5arm	1	nd	0.28	4	0	0	na	na

		reads	miRBase family seed
seed	---------------------GCAAGAA--------------------------------------------------------------------------------	0	miR-268
		len	cloning frequencies

cbr-miR-268	--------------------GGCAAGAATTAGAAGCAGTTTTGGT---------------------------------------------------------------	25
cbriggsae	--------------TGAAGCGGCAAGAATTAGAAGCAGTTTTGGTGTCAGACACACTCACTGACTCACTG---CTTCTTGTTTTTCTTC------------TTCTTCT
cremanei	--------------------AGCAAGAA-AAGAAGCGGTTGAGGTCTC----------TCAGACTCATTGGGACTTTGCGCAATTCAAG------------TTTGACT
celegans	AGAGGAAGTGGCTTTGAAGCGGCAAGAATTAGAAGCAGTTT-GGTGTCAGACACACT-ACTCACTCACTG---CTTCTTGTTTTTTCTGCTTTCTTTGCTTTTCCTCT
cbrenneri	--------------------GGCAAGAATTAGAAGCAGTTTTGGTGTCAG--------ACACACTCACTC---CTTCTTGT--------------------TTTTTCT
	***** ** * * * ***** * *** *
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++ ++++++++++++	NM_125760
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++ ++++++++++++	NM_073462
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++ ++++++++++++	NM_070729
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++ ++++++++++++	NM_007823
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++ ++++++++++++	NM_133969
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++ ++++++++++++	NM_001114375
	----- -------------------------------------------------------- ---------------- ------------	NM_134696
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++ ++++++++++++	NM_001112929
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++ ++++++++++++	NM_001112929
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++ ++++++++++++	NM_079237
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++ ++++++++++++	NM_079859
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++ ++++++++++++	NM_001039441
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++ ++++++++++++	NM_057559
	+++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++ ++++++++++++	NM_001017348
	----- -------------------------------------------------------- ---------------- ------------	NM_134696
	----- -------------------------------------------------------- ---------------- ------------	NM_030763
	----- -------------------------------------------------------- ---------------- ------------	NM_078262
cbriggsae	.((((.((.((((((.(((((((((....(.(((((.........))))).))))) ))))).)))))))).) )))....	1.000 -26.60
cremanei	..((((.. ..((((((...(((((((( ...........)))))))).)))..)))... ))))...	0.941 -12.60
celegans	((((((((.(((...(((((((.((((((.(((((((((.. ((((..((.....)) ...)))).)))) ))))).)))))).)))))))....)))))))))))	1.000 -41.60
cbrenneri	((.((((((.(((((.(((...(((((... ..))))).))). ))))).)) )))).))	1.000 -13.60

cbriggsae	chromosome:chrV:7334149:7334227:-1	Same_strand\|Intronic_coding\|NM_125760\|SNRK2-5/SNRK2.5/SRK2H ## Opposite_strand\|Intronic_coding\|NM_134696\|CG2839 ## Same_strand\|Intronic_non-coding\|NM_001112929\|LOC100127559 ## Opposite_strand\|Intronic_non-coding\|NM_078262\|let-2 ## {Repeats: no} ## {MIR: cbr-mir-268}
cremanei	chromosome:chrUn:124690097:124690215:-1	intergenic
celegans	chromosome:chrV:11137084:11137186:1	intergenic ## {MIR: cel-mir-268}
cbrenneri	chromosome:chrUn:176677397:176677515:-1	intergenic

miR-Intess™

cbr-mir-268

block3745 (miRBase cbr-mir-268) [miRNAknown_lenNOK_randfoldOK_bulgeHIGH]