miR-Intess: cbr-mir-353

cbr-mir-353

block78 (miRBase cbr-mir-353) [miRNAknown_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-353	0.003	no	no	0.38/0.38	21/21/1.00	nd	nd	0	0	0	0	9	11	5arm	1	nd	0.10	1	0	0	na	na

		reads	miRBase family seed
seed	----------AAGUAUC--------------------------------------------------------------------------	0	miR-353
		len	cloning frequencies

cbr-miR-353	---------CAAGTATCATGTGTTGGTATC-------------------------------------------------------------	21
cbriggsae	GCATGGGCACAAGTATCATGTGTTGGTATCATTGTTTCAAGTTATTTGTTGCTATGGTATCGATAAGCATGCTACGTGTGAAGTGCG----
celegans	---------AAAGTATC---TATGGGT----TTTTTAAAGGTT-----TAATTATATTACCTGTAA--AAGCCACTAGTATAGCATACAAC
	******* * * * ** * *** * * * *** *
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_080376
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_166030
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_058454
	-------------------------------------------------------------------------------------------- -----	NM_058465
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_025451
	-------------------------------------------------------------------------------------------- -----	NM_065146
	-------------------------------------------------------------------------------------------- -----	NM_005235
	-------------------------------------------------------------------------------------------- -----	NM_001042599
	-------------------------------------------------------------------------------------------- -----	NM_170794
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_135805
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_058998
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_173235
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_022515
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_001126226
cbriggsae	((((...((((.(((.((((((((((((((((.((..((((...))))..)).)))))))))))..))))).))).))))..)))).	1.000 -32.40
celegans	...((((( ((((((( ((((...((((. ..........))))..)) ))))).....))))).))))...	0.997 -15.10

cbriggsae	chromosome:chrI:2601063:2601149:-1	Same_strand\|Intronic_coding\|NM_080376\|mam ## Opposite_strand\|Intronic_non-coding\|NM_058465\|src-1 ## Same_strand\|Intronic_non-coding\|NM_025451\|Camk2n1 ## Opposite_strand\|Intronic_coding\|NM_065146\|H14E04.4 ## {Repeats: no} ## {MIR: cbr-mir-353}
celegans	chromosome:chrX:5073209:5073335:-1	Opposite_strand\|Boundary_coding\|C24H10.1

miR-Intess™

cbr-mir-353

block78 (miRBase cbr-mir-353) [miRNAknown_randfoldOK]