miR-Intess: cbr-mir-354

cbr-mir-354

block228 (miRBase cbr-mir-354) [miRNAknown]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-354	0.108	no	no	0.48/0.48	21/21/1.00	nd	nd	0	0	0	0	9	21	3arm	1	nd	0.24	2	0	0	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------------CCUUGUU-------------------------------	0	miR-354
		len	cloning frequencies

cbr-miR-354	--------------------------------------------------------------------------------ACCTTGTTTGTTGCTGCTCCT------------------	21
cbriggsae	CCAGAGCCGACTAAGTGCCTTGGTGCGGCTACAGACGGGTATCCGGCTCGATGTTCATACACCGCGAC-TCTTTCCTTTTACCTTGTTTGTTGCTGCTCCTTTTGGTTTT---------
celegans	-------CGACTAAGCACCTTGGTGCGGCTGCAGACGGGTATCCGGCTCGACGTTCATACATCACGACTTCTTTCCTTTTACCTTGTTTGTTGCTGCTCCTATTGGTTTTGATTTGTTG
cjaponica	--------------------TGGTGCGGCTTCGAACGGGTA-ACAGCTCGTCGTTCATAC---------TTCTTCCTTTTACCTTGTTTGTTGCCTCTCCT------------------
	********** * ******* * *** ****** * ******************** ***
	------------------------------------------------------------------------- ----------------------------------------- -----	NM_061066
	+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++++++++++++++++++ +++++	NM_067049
	>>>>>>>>>>>>>............................................................ ......................................... .....	NM_017866
	>>>>>>>>>>>>>>>>......................................................... ......................................... .....	NM_001023
	>>>>>>>>>>>>>>>>>>>...................................................... ......................................... .....	NM_079697
	>>>>>>>>>>>>>>>>......................................................... ......................................... .....	NM_001005106
	>>>>>>>>>>>>>>>>......................................................... ......................................... .....	NM_001034438
	>>>>>>>>>>>>>>>>......................................................... ......................................... .....	NM_001085938
	>>>>>>>>>>>>>>>>......................................................... ......................................... .....	NM_001092903
	>>>>>>>>>>>>>>>>......................................................... ......................................... .....	NM_001098339
	>>>>>>>>>>>>>>>>......................................................... ......................................... .....	NM_213204
	>>>>>>>>>>>>>>>>>>>...................................................... ......................................... .....	NM_208340
	>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>	NM_170948
	>>>>>>>>>>>>>>>>>>>...................................................... ......................................... .....	NM_001023427
	>>>>>>>>>>>>>>>>......................................................... ......................................... .....	NM_026147
	>>>>>>>>>>>>>............................................................ ......................................... .....	NM_001040613
	>>>>>>>>>>>>>>>>......................................................... ......................................... .....	NM_001129954
	>>>>>>>>>>>>>>>>......................................................... ......................................... .....	NM_001007603
	>>>>>>>>>>>>>>>>......................................................... ......................................... .....	NM_001124364
cbriggsae	..((((((((...........((.(((((.(((((((((((...((.(((.(((....)))...))). .....))...)))).))))))).))))).))..))))))))	1.000 -30.62
celegans	((((..((.(((..((.(((((.(((((((((((...((...((.(((..........))).))...))...))))).)))))).))))).))....))).)).....))))	0.984 -30.80
cjaponica	.((...(((..(((((((((( (.((......((....)) ......)).)))))).)))))..)))...)).	0.999 -17.60

cbriggsae	chromosome:chrI:10568239:10568347:-1	Opposite_strand\|Intronic_non-coding\|NM_061066\|K03D10.3 ## Same_strand\|Intronic_non-coding\|NM_067049\|Y47D3A.21 ## Same_strand\|Exonic_non-coding\|NM_170948\|rps-20 ## {Repeats: no} ## {MIR: cbr-mir-354}
celegans	chromosome:chrI:14468361:14468472:-1	Same_strand\|Exonic_coding\|Y105E8A.16.2 ## Same_strand\|Boundary_non-coding\|Y105E8A.16 ## {MIR: cel-mir-354}
cjaponica	chromosome:chrUn:65822232:65822380:-1	Same_strand\|Boundary_non-coding\|NM_208340

miR-Intess™

cbr-mir-354

block228 (miRBase cbr-mir-354) [miRNAknown]