miR-Intess: cbr-mir-355

cbr-mir-355

Cloning frequencies
absolute	AF16
cbr-mir-355 5arm	11
normalized	AF16
cbr-mir-355 5arm	0.029

block693 (miRBase cbr-mir-355) [miRNAknown_cloningOK_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-355	0.001	no	no	0.38/0.38	21/21/1.00	0.0	0.0	11	0	1	0	32	3	5arm	1	nd	0.14	2	11	1	na	na

		reads	miRBase family seed
seed	------------------------------------------UUGUUUU-----------------------------------------------------------------------------------------------	11	miR-355
		len	cloning frequencies
			AF16
cbr-miR-355	-----------------------------------------TTTGTTTTAGCCTGAGCTATG----------------------------------------------------------------------------------	21	11
cbriggsae	--CTACTGATTATGATTA-----GTCAGCAATCGGATGG--TTTGTTTTAGCCTGAGCTATGTGTTATT-GCATATTCATAGCTACTTG---CTAAAACA-------TACCAATCGAG-TTGACTGACAT--------------
cremanei	------------------------------------TGG--TTTGTTTTAGCCTGAGCTATGTGTTATT-GCACATACATAGCTTCTTG---TTAAAACA-------TACCA--------------------------------
celegans	-----CTGTTTGAGATTAATAATGTCAAGAATTGAATGG--TTTGTTTTAGCCTGAGCTATGAGTCATCGGAATATGCATAGCTTCTTG---CTAAAACA-------TGCCAATCAATCTTAATTGACGAAGTTTTTGAAACAG
cbrenneri	-----CTTATTCTTCTTCGAAGTCATCAGAAGGGAATGG--TTTGTTTTAGCCTGAGCTATGTGTTATT-GCACATACATAGCTACTTG---TTAAAACA-------TACCAATCCAA-TGAACTGACTGCTATTTGGTAAG--
cjaponica	---------------------AGCCCATCCATTGAATGG--TTTGTTTTAGCCTGAGCTATGGAAAATT-ATAGCCGCATAGCTTCTTG---CTAAAACA-------AACCAGTCGAT--------------------------
ppacificus	GGACAAGAATCGCACTAACGAAGAGAAACAACCACCTGGAATTTGTTTTTGCCGGCATCATTTTTGAAA-TAGCGTAGATGTCGACTTGAGCTTGAGACAGCACCAGAGCCATTTCTTTTTCGTTCAAACGGATGTTC------
	* **** * * ** * ** * **** * * * *
	----- ---------------- ---------------- ---------------------------- ------------------- -------- ----------- ----------- -----	NM_020252
	+++++ ++++++++++++++++ ++++++++++++++++ ++++++++++++++++++++++++++++ +++++++++++++++++++ ++++++++ +++++++++++ +++++++++++ +++++	NM_063458
	+++++ ++++++++++++++++ ++++++++++++++++ ++++++++++++++++++++++++++++ +++++++++++++++++++ ++++++++ +++++++++++ +++++++++++ +++++	NM_059843
	----- ---------------- ---------------- ---------------------------- ------------------- -------- ----------- ----------- -----	NM_183355
	+++++ ++++++++++++++++ ++++++++++++++++ ++++++++++++++++++++++++++++ +++++++++++++++++++ ++++++++ +++++++++++ +++++++++++ +++++	NM_073745
cbriggsae	.........(((.((( ((((((..((((.((( (.(((((((((..(((((((((((.... )))....))))))).)..) )))))))) .)))).))))) )))))))))))	1.000 -42.60
cremanei	.(( (.(((((((((..(((((((((((.... ....)))))))))))...) )))))))) .))).	1.000 -26.60
celegans	((((((.(((..(((..((((((..(((((.((( (.(((((((((..((((((((..((....)).....))))))))...) )))))))) .)))).))))).....))))))..)))))).))))))	0.999 -42.40
cbrenneri	((((((.........((((((((....(((.((( (.(((((((((...((((((((((.... ....))))))))))....) )))))))) .)))).))).. )))..))))).......))))))	0.953 -40.29
cjaponica	.........(((((.((( (((((((((((..((((((((....... .......))))))))...) )))))))) ))))).)))))	0.999 -32.44
ppacificus	(((((....(((....((((((((((((.......((((...(((((((.(((((((((.......... .......)))))))......))..)))))))..)))).....)))))))).))))....))).)))))	0.912 -28.13

cbriggsae	chromosome:chrII:6505548:6505656:-1	Opposite_strand\|Intronic_non-coding\|NM_020252\|Nrxn1 ## Same_strand\|Intronic_coding\|NM_063458\|T01B7.8 ## {Repeats: no} ## {MIR: cbr-mir-355}
cremanei	chromosome:chrUn:9664785:9664847:1	Opposite_strand\|Intronic_coding\|NM_066413 ## Same_strand\|Intronic_coding\|NM_062542
celegans	chromosome:chrII:11833447:11833573:-1	intergenic ## {MIR: cel-mir-355}
cbrenneri	chromosome:chrUn:154072129:154072251:-1	intergenic
cjaponica	chromosome:chrUn:90387998:90388081:-1	intergenic
ppacificus	chromosome:chrUn:46891746:46891882:1	intergenic

miR-Intess™

cbr-mir-355

block693 (miRBase cbr-mir-355) [miRNAknown_cloningOK_randfoldOK]