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cbr-mir-356

cbr-mir-356

block1513 (miRBase cbr-mir-356) [miRNAknown_randfoldOK]

Hairpin parameters
miRNArandfoldRNArepGC min/maxlen min/max/mir_range5'var3'varreadsreads editedlibslibs editedbase distanceloop distancepositionlocationsexon distanceunpairedmax bulgetotal readstotal libsdicerdrosha
miRBase cbr-mir-3560.001nono0.48/0.4821/21/1.00nd
nd
0
0
0
0
19
3
5arm
1
nd
0.29
3
00nana
block1513 hairpin
  readsmiRBase family seed
seed     -----------------------------UGAGCAA-------------------------------------------------------------------------------------------     0miR-233/356/87
  lencloning frequencies
   
cbr-miR-356     ----------------------------ATGAGCAACGCGAACAAATC--------C----------------------------------------------------------------------     21
cbriggsae     ---------CCTCATCCAACCAATGTGGATGAGCAACGCGAACAAATC--------CTCTTATAAGAGATTTGCCACGCCGCCGCTCACCACACT-------------GGCTTTCAGAA-GG-----      
cremanei     --------CGCTTTTGCCATCGATGTGGTTGAGCAACGCGAACAAATC---ATCGAAAATGACTG-AGATTTGCGCCAACGTGGCTCACCACATC-------------G--AATTGGAG-CG-----      
celegans     -GTTAAAGTTTCCTTGAGAACAATGTGGTTGAGCAACGCGAACAAATCATCAATGTAAATTTCAGCGGATTCGTTACGACGTGTCTCACCACATC------GTTAGTAGGATTTCAGAA-C------      
cbrenneri     ----------------------------ATGAGCAATGT--------------------------CTGATTCAACGTTACGAAGACGAACAGTTA----------------ACTCAGAACCGCTTCC      
cjaponica     ACATCGGCTCAAGCTGGCGATGATGTGGATGAGCAATGCGAACAAATCA--ATCGATAATTCAGATGGATTTGTTGCCACGTGGCTCACCTCATCAGATCGAGGAGCAAGCAGTTAGAA-TGT----      
ppacificus     ----------------------------ATGAGCAATTCCTACATCTT---------CTTCATAGCGGATGCACA--------------------------------------TGGGGA-CGCCAAT      
                                   *******                               ***                                           *  *                
 +++++         +++++++++++++++++++++++++++++++++++++++        +++++++++++++++++++++++++++++++++++++++             +++++++++++ ++     +++++NM_000209
 -----         ---------------------------------------        ---------------------------------------             ----------- --     -----NM_170975
 -----         ---------------------------------------        ---------------------------------------             ----------- --     -----NM_007723
 -----         ---------------------------------------        ---------------------------------------             ----------- --     -----NM_001011571
 +++++         +++++++++++++++++++++++++++++++++++++++        +++++++++++++++++++++++++++++++++++++++             +++++++++++ ++     +++++NM_075282
 -----         ---------------------------------------        ---------------------------------------             ----------- --     -----NM_010466
 +++++         +++++++++++++++++++++++++++++++++++++++        +++++++++++++++++++++++++++++++++++++++             +++++++++++ ++     +++++NM_133381
 +++++         +++++++++++++++++++++++++++++++++++++++        +++++++++++++++++++++++++++++++++++++++             +++++++++++ ++     +++++NM_075413
 -----         ---------------------------------------        ---------------------------------------             ----------- --     -----NM_001050895
 -----         ---------------------------------------        ---------------------------------------             ----------- --     -----NM_001013315
 -----         ---------------------------------------        ---------------------------------------             ----------- --     -----NM_001105043
 -----         ---------------------------------------        ---------------------------------------             ----------- --     -----NM_001067238
 -----         ---------------------------------------        ---------------------------------------             ----------- --     -----NM_001067238
 -----         ---------------------------------------        ---------------------------------------             ----------- --     -----NM_001067238
 -----         ---------------------------------------        ---------------------------------------             ----------- --     -----NM_001011405
 -----         ---------------------------------------        ---------------------------------------             ----------- --     -----NM_203548
 +++++         +++++++++++++++++++++++++++++++++++++++        +++++++++++++++++++++++++++++++++++++++             +++++++++++ ++     +++++NM_199449
 -----         ---------------------------------------        ---------------------------------------             ----------- --     -----NM_065202
cbriggsae              ((((......(((.(((((.(((((...(((..(((((.        ((((....)))))))))...)))....)))))))))).)             ))......)). ))          0.960 -28.80
cremanei             ((((((.....(((((((((.(((((.(((((..((((((   .(((........)) ))))))))))....)).))))))))))))             )  )...)))) ))          0.997 -37.00
celegans      (((......((((....(((.((((((.((((..((((((((.((((.....((.......))...)))).))).)).)))..)))))))))).      )))...))))......)) )           0.992 -29.70
cbrenneri                                 ..((((....(                          ((((...((((((.((....))))).))).                ..)))))...))))..     0.988 -11.20
cjaponica     ......(((...(((..((((((((.((.(((((...((.((((((((.  (((((....)).))).))))))))))......))))))).)))))..)))...))).)))........ ...         0.870 -36.40
ppacificus                                 .((.((..(((((((((((.         ((....)).)))))....                                      )))))) .))))..     0.999 -11.50

cbriggsaechromosome:chrIII:10353560:10353650:-1Same_strand|Intronic_non-coding|NM_000209|PDX1 ## Opposite_strand|Intronic_non-coding|NM_170975|C33C12.10 ## Opposite_strand|Intronic_coding|NM_007723|Cnga1 ## {Repeats: no} ## {MIR: cbr-mir-356}
cremaneichromosome:chrUn:133239914:133240007:-1Opposite_strand|Intronic_coding|NM_001002694
celeganschromosome:chrIII:7860071:7860183:1intergenic ## {MIR: cel-mir-356}
cbrennerichromosome:chrUn:182988097:182988227:-1Opposite_strand|Boundary_coding|NM_001083269
cjaponicachromosome:chrUn:31081413:31081532:1intergenic
ppacificuschromosome:chrUn:165162084:165162214:1intergenic


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