C.briggsae small RNAs

miR-Intess™

miR classification

miR expression

cbr-mir-358

cbr-mir-358

block3641 (miRBase cbr-mir-358) [miRNAknown_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-358	0.001	no	no	0.45/0.45	22/22/1.00	nd	nd	0	0	0	0	22	0	3arm	1	nd	0.18	2	0	0	na	na

block3641 hairpin

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------AAUUGGU------------------------------------	0	miR-358
		len	cloning frequencies

cbr-miR-358	-------------------------------------------------------------------------------CAATTGGTATCCTTAGTCGTGG----------------------	22
cbriggsae	--------------CTCCCCATTCGGATTGATACCCGACTTCCGG-ATACCAAATGTCATATCCA---ACTCGTTTCGTCAATTGGTATCCTTAGTCGTGGTCTCAATCTGTACACGGCGAGA
cremanei	TCTATCATTCAAAATTCACCG--CGGATGGCGACCTGGC--CAGGCATTCCAACTGTC-CATCCAAGTACTTTATCGGACAATTGGTATCCCT-GTCAAGGTCTCAATCC-------------
celegans	---------------TCGCGA--CGGCTGGCGACCTGGC--CAGGCATTCCAACTGTCAAACTTACAAAGCTTTCTCGACAATTGGTATCCCT-GTCAAGGTCTCAATCCGTTCA----GCGA
	** * *** * * *** * * * ** ** * * * * ************ * * ********
	----- ------------------------------- ------------------- ------------------------------------------------------------	NM_001106714
	+++++ +++++++++++++++++++++++++++++++ +++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028857
	+++++ +++++++++++++++++++++++++++++++ +++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001028858
	+++++ +++++++++++++++++++++++++++++++ +++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_001062304
	+++++ +++++++++++++++++++++++++++++++ +++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_029761
	----- ------------------------------- ------------------- ------------------------------------------------------------	NM_072806
cbriggsae	(((((....((((((((.((((((((...(( (((((((.((......... ...........)).)))))))))..))))).))).)))))))).....)).))).	0.990 -39.95
cremanei	..................... .((((...(((((((. ((((.((.((((.(((( (................))))).)))).)).))) )))).))))...))))	0.936 -29.49
celegans	(((((( (((.(((.(((((((. ((((.((.((((.((((...................)))).)))).)).))) )))).)))))))..))))).. ))))	1.000 -33.01

cbriggsae	chromosome:chrV:1214365:1214469:-1	Opposite_strand\|Intronic_non-coding\|NM_001106714\|Slc7a15 ## Same_strand\|Intronic_non-coding\|NM_001028857\|K04F1.14 ## Same_strand\|Intronic_coding\|NM_001028858\|K04F1.14 ## {Repeats: no} ## {MIR: cbr-mir-358}
cremanei	chromosome:chrUn:25671712:25671815:-1	Opposite_strand\|Intronic_coding\|NM_199607
celegans	chromosome:chrV:8580842:8580940:-1	Opposite_strand\|Intronic_coding\|F25G6.2 ## {MIR: cel-mir-358}

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