miR-Intess: cbr-mir-359

cbr-mir-359

Cloning frequencies
absolute	AF16
cbr-mir-359 3arm	1
normalized	AF16
cbr-mir-359 3arm	0.003

block4919 (miRBase cbr-mir-359) [miRNAknown_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-359	0.001	no	no	0.45/0.50	20/22/1.00	0.0	0.0	1	0	1	0	11	3	3arm	1	nd	0.25	1	1	1	na	na

		reads	miRBase family seed
seed	--------------------------------------------------------------------------------------CACUGGU--------------------------------------------	1	miR-359
		len	cloning frequencies
			AF16
	-------------------------------------------------------------------------------------TCACTGGTTATCCTCTGTCG--------------------------------	20	1
cbr-miR-359	-------------------------------------------------------------------------------------TCACTGGTTATCCTCTGTCGAA------------------------------	22	-
cbriggsae	--------------GACAAAT-----------------CTTCATCCGTCAGAGCATATCTCAGTTACACAACTTCCTAAATAGTGTCACTGGTTATCCTCTGTCGAAATGAAGATGTC-------------------
cremanei	--------GCAAAAGACTAATGGCC-----TCGATAAACTTCATTGGTCAGAGCAACACGCAGTCACATAAGTTTCTGAAATGTGTCACTGGTTTTCCTCTGACTAATTGAAGATATCGAGTAAATTTTTTTGT---
celegans	-----------CAGTACTGATATTAATGCTCCTTGAAATTTCAATCGTTAGAGTAACACACAGTTACACGACCTCATCAATCGTGTCACTGGTCTTTCTCTGACGAATTGAAGTTCTGGAGACAATTTTGGTTGTTG
cbrenneri	GTATTCTGAAAAAAAACTCAAATCG--------------TTCGATTGTCAGAGCAATCCTCAGTAACACGTACTCATTATTTGTGTCACTGGTTTTCTTCTGACGAATCGAAATGCTCGAGTTCTGGTTTGTTTTGC
	** * * **** * * ** * * * * *********** * **** * * *
	+++++ +++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ +++++	NM_178660
	----- ------- -------------------------------------------------------------------------------- -----	NM_133381
	----- ------- -------------------------------------------------------------------------------- -----	NM_002254
	----- ------- -------------------------------------------------------------------------------- -----	NM_001059519
	----- ------- -------------------------------------------------------------------------------- -----	NM_024598
	----- ------- -------------------------------------------------------------------------------- -----	NM_175804
	----- ------- -------------------------------------------------------------------------------- -----	NM_001089427
	----- ------- -------------------------------------------------------------------------------- -----	NM_001110788
cbriggsae	((((..( ((((((.((.(((((.(((.(.((((.((((.............)))).))))).))).))))).))..)))))))))))	1.000 -28.32
cremanei	((((((((...((...( ((((((..(((((((((((((((.((.((.((((.(((((...........))))).)))))).)).))))))))))).)))).)))))))...))))))))))	0.997 -39.50
celegans	....(((((.(((....((((..((.((((((((((((((((.((.((.((((.((((((.........)))))).)))))).)).))))))))).))))))))).))))..))).))))).....	0.947 -40.10
cbrenneri	(((...((((....(((((...... ((((((((((((((.((...(((((.(((((...........))))).)))))..)).))))))).)))))))......)))))....))))...)))	0.972 -30.40

cbriggsae	chromosome:chrX:7890607:7890693:1	Same_strand\|Intronic_non-coding\|NM_178660\|Rbms3 ## Opposite_strand\|Intronic_non-coding\|NM_133381\|Crebbp ## Opposite_strand\|Intronic_coding\|NM_002254\|KIF3C ## {Repeats: no} ## {MIR: cbr-mir-359}
cremanei	chromosome:chrUn:4288224:4288344:-1	intergenic
celegans	chromosome:chrX:3004270:3004395:1	intergenic ## {MIR: cel-mir-359}
cbrenneri	chromosome:chrUn:1354705:1354827:1	intergenic

miR-Intess™

cbr-mir-359

block4919 (miRBase cbr-mir-359) [miRNAknown_randfoldOK]