cbr-mir-360
| absolute | AF16 |
| cbr-mir-360 5arm | 1 |
| normalized | AF16 |
| cbr-mir-360 5arm | 0.003 |
sblock80 (miRBase cbr-mir-360) [miRNAknown_multiarm_DicerNOK_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| miRBase cbr-mir-360 | 0.001 | no | no | 0.48/0.50 | 20/21/1.00 | 0.0 nd | 0.0 nd | 1 0 | 0 0 | 1 0 | 0 0 | 21 24 | 6 8 | 5arm 3arm | 1 1 | nd nd | 0.15 0.19 | 2 2 | 1 | 1 | -1 | 0 |
| reads | miRBase family seed | ||
| seed | ----------------------UGUGACC--------------------------------------------------------------------------------- | 1 | novel |
| seed | -------------------------------------------------------------GACCGUA------------------------------------------ | 0 | miR-360 |
| len | cloning frequencies | ||
| AF16 | |||
| ---------------------TTGTGACCGTTGTTACGGTC--------------------------------------------------------------------- | 20 | 1 | |
| cbr-miR-360 | ------------------------------------------------------------TGACCGTAATCCCGTTCACA-----A------------------------ | 21 | - |
| cbriggsae | CATAAAAAAGCGCCTAGGGTTTTGTGACCGTTGTTACGGTCAATTCATG-TCTGACACAATGACCGTAATCCCGTTCACA-----ACACCTTGTGTGGCTTGAATAATGA | ||
| cremanei | ---------------------TTGTGACCGTTGTTACGGTCAATTTCAT-TCAGAAGCTATGACCGTAATCCCGTTCACA-----A------------------------ | ||
| celegans | ---------------------TTGTGACCGTTGTTACGGTCAATTTGCAAATTGAAAAAATGACCGTAATCCCGTTCACA-----A------------------------ | ||
| cbrenneri | ----------GCATCAAGGTTTTGTGACCGTTGTTACGGTCATTTCAACATGTAAC----TGACCGTAATCCCGTTCACA-----ACACATTGTTTGT------------ | ||
| cjaponica | -------------GAAAGCTTTTGTGACCGTTGTTACGGTCAAAACATT-CCTG--GAAATGACCGTAGTTTCGTTCACA-----AAAGCTTTT---------------- | ||
| ppacificus | -----GAACTCGCCTGTGGAGTTGTGACCGTTGTTACGGGCACTGCATC-GATGCCGGGTTGCCCGTCCCCTCGGTTACACCTCGACTGAGTTT---------------- | ||
| ****************** ** ** **** ** * *** * | |||
| ------------------------------------------------------ ------------------------------ ------------------------------ | NM_014930 | ||
| ------------------------------------------------------ ------------------------------ ------------------------------ | NM_027552 | ||
| ------------------------------------------------------ ------------------------------ ------------------------------ | NM_022702 | ||
| ------------------------------------------------------ ------------------------------ ------------------------------ | NM_001019667 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++ | NM_011438 | ||
| cbriggsae | (((....((((((.((((((.((((((.((..((((((((((..(((.. ..))).....))))))))))..)).))))) ).)))))).))).))).....))). | 1.000 -36.70 | |
| cremanei | .(((((.((..((((((((((.((((.. ...))))...))))))))))..)).))))) . | 1.000 -23.90 | |
| celegans | .(((((.((..((((((((((.(((..........))).))))))))))..)).))))) . | 1.000 -23.20 | |
| cbrenneri | (((.(((.((.((((((.((..((((((((((.((((...)).)). ))))))))))..)).))))) ).)).)))..))) | 0.999 -26.80 | |
| cjaponica | ((((((((((((((.((..((((((((((...((.. ..)) ....))))))))))..)).))))) ))))))))) | 1.000 -32.40 | |
| ppacificus | (((((((...((.(((.((((((((.....((((((((((((.. ..)))..))).)))))).....)))))))).))).))))))))) | 1.000 -38.80 |
| cbriggsae | chromosome:chrX:11095209:11095312:1 | Opposite_strand|Intronic_coding|NM_014930|ZNF510 ## Opposite_strand|Intronic_non-coding|NM_027552|Kynu ## Same_strand|Intronic_non-coding|NM_011438|Sox12 ## {Repeats: no} ## {MIR: cbr-mir-360} |
| cremanei | chromosome:chrUn:1914768:1914911:-1 | Same_strand|Intronic_coding|NM_170227 |
| celegans | chromosome:chrX:5919093:5919236:1 | intergenic ## {MIR: cel-mir-360} |
| cbrenneri | chromosome:chrUn:38391520:38391598:-1 | intergenic |
| cjaponica | chromosome:chrUn:44027987:44028059:-1 | intergenic |
| ppacificus | chromosome:chrUn:153152215:153152302:-1 | Opposite_strand|Intronic_coding|NM_001060841 ## Same_strand|Intronic_coding|NM_031220 |
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