C.briggsae small RNAs

miR-Intess™

miR classification

miR expression

cbr-mir-392

cbr-mir-392

block5223 (miRBase cbr-mir-392) [miRNAknown_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
miRBase cbr-mir-392	0.001	no	no	0.41/0.41	22/22/1.00	nd	nd	0	0	0	0	15	5	3arm	1	nd	0.14	1	0	0	na	na

block5223 hairpin

		reads	miRBase family seed
seed	----------------------------------------------------------AUCAUCG-----------------------------	0	miR-392
		len	cloning frequencies

cbr-miR-392	---------------------------------------------------------TATCATCGATCATGTGAGCTGT---------------	22
cbriggsae	AAATCCTGCATTTATCTGACATCTCACATTATTGAGGATATAAACTAAATAAAGAAATATCATCGATCATGTGAGCTGTTAGATTATCAGATTT
cremanei	--ATCC-GTGATTATCTGGCGGTTTACATGGTAGAAGATATCAGTATAAAAAATAGATATCATCGATCATGTATGCTGTCAGATTAATGGAT--
celegans	------------------TCAGCATTCGTGGTTGAGGATATCGAACACAAAAAAAGATATCATCGATCACGTGTGATGA---------------
ppacificus	-------------AGCTGATGGAA-GTATGCTATAGAACATCAATATGATAA--TGCTATCATCGTACGTCCATCTGGA---------------
	* * * * ** * ****** * *
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_007734
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_134696
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	NM_203905
	--------------------------------------------------------------------------------------------------------	NM_001065436
cbriggsae	.....(((.((..((((((((.(((((((.(((((.(((((...((......))..))))).))))).))))))).)))))))).)))))....	1.000 -29.20
cremanei	(((( ((....((((((((((.((((((((.((.((((((.((.......)).)))))).)).)))))))).))))))))))..))))))	1.000 -37.60
celegans	(((.(((.(((((((((.((((((.............)))))).))))))))).))).)))	1.000 -22.62
ppacificus	....((((((. (((((..((((...(((.....))).. ..))))...))))).))))))....	0.974 -16.60

cbriggsae	chromosome:chrX:19202542:19202635:1	Same_strand\|Intronic_non-coding\|NM_007734\|Col4a3 ## Same_strand\|Intronic_coding\|NM_134696\|CG2839 ## Opposite_strand\|Intronic_non-coding\|NM_001065436\|Os07g0150700 ## {Repeats: no} ## {MIR: cbr-mir-392}
cremanei	chromosome:chrUn:96274952:96275040:1	intergenic
celegans	chromosome:chrX:13597142:13597275:1	intergenic ## {MIR: cel-mir-392}
ppacificus	chromosome:chrUn:26983987:26984120:-1	Same_strand\|Intronic_coding\|NM_136618 ## Same_strand\|Boundary_non-coding\|NM_070048

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